------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file SYNAPSIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SYNAPSIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SYN1_BOVIN 706 SYN1_HUMAN 705 SYN1_RAT 704 Pratt run started at Thu Feb 6 21:16:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 208.5024 3( 3) P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S-D 2: 208.5024 3( 3) P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S 3: 208.5024 3( 3) G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F 4: 208.5024 3( 3) G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L 5: 208.5024 3( 3) A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S 6: 208.5024 3( 3) A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A 7: 208.5024 3( 3) A-A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F 8: 208.5024 3( 3) G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K-M 9: 208.5024 3( 3) F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K 10: 208.5024 3( 3) I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N 11: 208.5024 3( 3) E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V 12: 208.5024 3( 3) S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V 13: 208.5024 3( 3) C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L 14: 208.5024 3( 3) T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E 15: 208.5024 3( 3) D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V 16: 208.5024 3( 3) V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I 17: 208.5024 3( 3) W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L 18: 208.5024 3( 3) L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q 19: 208.5024 3( 3) K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K 20: 208.5024 3( 3) Y-K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D Warning: upper limit on pattern length (components) reached -- to check if longer patterns may be conserved. -- rerun Pratt with increased C and L values Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 208.5024 3( 3) P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S-D B 2: 208.5024 3( 3) P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S C 3: 208.5024 3( 3) G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F D 4: 208.5024 3( 3) G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L E 5: 208.5024 3( 3) A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S F 6: 208.5024 3( 3) A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A G 7: 208.5024 3( 3) A-A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F H 8: 208.5024 3( 3) G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K-M I 9: 208.5024 3( 3) F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K J 10: 208.5024 3( 3) I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N K 11: 208.5024 3( 3) E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V L 12: 208.5024 3( 3) S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V M 13: 208.5024 3( 3) C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L N 14: 208.5024 3( 3) T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E O 15: 208.5024 3( 3) D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V P 16: 208.5024 3( 3) V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I Q 17: 208.5024 3( 3) W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L R 18: 208.5024 3( 3) L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q S 19: 208.5024 3( 3) K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K T 20: 208.5024 3( 3) Y-K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 208.5024 3( 3) P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S-D Occurences: 3(3) SYN1_BOVIN : 657- 706: aaggp PHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD SYN1_HUMAN : 656- 705: aaggp PHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD SYN1_RAT : 655- 704: aaggp PHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFSD B 2: 208.5024 3( 3) P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F-S Occurences: 3(3) SYN1_BOVIN : 656- 705: aaagg PPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFS d SYN1_HUMAN : 655- 704: aaagg PPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFS d SYN1_RAT : 654- 703: aaagg PPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLFS d C 3: 208.5024 3( 3) G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L-F Occurences: 3(3) SYN1_BOVIN : 655- 704: taaag GPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLF sd SYN1_HUMAN : 654- 703: taaag GPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLF sd SYN1_RAT : 653- 702: iaaag GPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASLF sd D 4: 208.5024 3( 3) G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S-L Occurences: 3(3) SYN1_BOVIN : 654- 703: ataaa GGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASL fsd SYN1_HUMAN : 653- 702: ataaa GGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASL fsd SYN1_RAT : 652- 701: iiaaa GGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFASL fsd E 5: 208.5024 3( 3) A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A-S Occurences: 3(3) SYN1_BOVIN : 653- 702: pataa AGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFAS lfsd SYN1_HUMAN : 652- 701: pataa AGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFAS lfsd SYN1_RAT : 651- 700: piiaa AGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFAS lfsd F 6: 208.5024 3( 3) A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F-A Occurences: 3(3) SYN1_BOVIN : 652- 701: ppata AAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFA slfsd SYN1_HUMAN : 651- 700: ppata AAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFA slfsd SYN1_RAT : 650- 699: ppiia AAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSFA slfsd G 7: 208.5024 3( 3) A-A-A-G-G-P-P-H-P-Q-L-N-K-S-Q-S-L-T-N-A-F-N-L-P-E-P-A-P-P-R-P-S-L-S-Q-D-E-V-K-A-E-T-I-R-S-L-R-K-S-F Occurences: 3(3) SYN1_BOVIN : 651- 700: pppat AAAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSF aslfs SYN1_HUMAN : 650- 699: pppat AAAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSF aslfs SYN1_RAT : 649- 698: pppii AAAGGPPHPQLNKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSF aslfs H 8: 208.5024 3( 3) G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K-M Occurences: 3(3) SYN1_BOVIN : 365- 414: cseif GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM aqalp SYN1_HUMAN : 365- 414: cseif GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM aqalp SYN1_RAT : 365- 414: cseif GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKM tqalp I 9: 208.5024 3( 3) F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N-K Occurences: 3(3) SYN1_BOVIN : 364- 413: tcsei FGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNK maqal SYN1_HUMAN : 364- 413: tcsei FGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNK maqal SYN1_RAT : 364- 413: tcsei FGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNK mtqal J 10: 208.5024 3( 3) I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V-N Occurences: 3(3) SYN1_BOVIN : 363- 412: dtcse IFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVN kmaqa SYN1_HUMAN : 363- 412: dtcse IFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVN kmaqa SYN1_RAT : 363- 412: dtcse IFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVN kmtqa K 11: 208.5024 3( 3) E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V-V Occurences: 3(3) SYN1_BOVIN : 362- 411: vdtcs EIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV nkmaq SYN1_HUMAN : 362- 411: vdtcs EIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV nkmaq SYN1_RAT : 362- 411: vdtcs EIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV nkmtq L 12: 208.5024 3( 3) S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L-V Occurences: 3(3) SYN1_BOVIN : 361- 410: wvdtc SEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELV vnkma SYN1_HUMAN : 361- 410: wvdtc SEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELV vnkma SYN1_RAT : 361- 410: wvdtc SEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELV vnkmt M 13: 208.5024 3( 3) C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E-L Occurences: 3(3) SYN1_BOVIN : 360- 409: lwvdt CSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVEL vvnkm SYN1_HUMAN : 360- 409: lwvdt CSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVEL vvnkm SYN1_RAT : 360- 409: lwvdt CSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVEL vvnkm N 14: 208.5024 3( 3) T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V-E Occurences: 3(3) SYN1_BOVIN : 359- 408: klwvd TCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVE lvvnk SYN1_HUMAN : 359- 408: klwvd TCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVE lvvnk SYN1_RAT : 359- 408: klwvd TCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVE lvvnk O 15: 208.5024 3( 3) D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I-V Occurences: 3(3) SYN1_BOVIN : 358- 407: yklwv DTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIV elvvn SYN1_HUMAN : 358- 407: yklwv DTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIV elvvn SYN1_RAT : 358- 407: yklwv DTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIV elvvn P 16: 208.5024 3( 3) V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L-I Occurences: 3(3) SYN1_BOVIN : 357- 406: ryklw VDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLI velvv SYN1_HUMAN : 357- 406: ryklw VDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLI velvv SYN1_RAT : 357- 406: ryklw VDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLI velvv Q 17: 208.5024 3( 3) W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q-L Occurences: 3(3) SYN1_BOVIN : 356- 405: drykl WVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQL ivelv SYN1_HUMAN : 356- 405: drykl WVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQL ivelv SYN1_RAT : 356- 405: drykl WVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQL ivelv R 18: 208.5024 3( 3) L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K-Q Occurences: 3(3) SYN1_BOVIN : 355- 404: sdryk LWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQ livel SYN1_HUMAN : 355- 404: sdryk LWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQ livel SYN1_RAT : 355- 404: sdryk LWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQ livel S 19: 208.5024 3( 3) K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D-K Occurences: 3(3) SYN1_BOVIN : 354- 403: msdry KLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDK qlive SYN1_HUMAN : 354- 403: msdry KLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDK qlive SYN1_RAT : 354- 403: msdry KLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDK qlive T 20: 208.5024 3( 3) Y-K-L-W-V-D-T-C-S-E-I-F-G-G-L-D-I-C-A-V-E-A-L-H-G-K-D-G-R-D-H-I-I-E-V-V-G-S-S-M-P-L-I-G-D-H-Q-D-E-D Occurences: 3(3) SYN1_BOVIN : 353- 402: amsdr YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDED kqliv SYN1_HUMAN : 353- 402: amsdr YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDED kqliv SYN1_RAT : 353- 402: amsdr YKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDED kqliv Number of patterns evaluated by Pratt:1037749 Total running time: 126 seconds