------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 2 sequences from file SVP_I PATTERN CONSERVATION: CM: min Nr of Seqs to Match 2 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SVP_I.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ELAF_HUMAN 117 SVP1_CAVPO 390 Pratt run started at Thu Feb 6 21:16:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 78.2310 2( 2) L-x(5)-V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-x(3)-R-x(4)-G-Q-D-x-V-K-x(5)-K-G-Q-D 2: 74.0609 2( 2) V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-x(3)-R-x(4)-G-Q-D-x-V-K-x(5)-K-G-Q-D 3: 73.0609 2( 2) D-x(4)-R-x(0,2)-V-x(1,3)-G-Q-D-x-V-K-G-x(4)-K-G-Q-x(2)-V-x(5)-V-K-G-x(2)-S-x-K 4: 64.7208 2( 2) K-G-Q-D-T-x(3)-R-x(0,2)-F-x(1,3)-G-Q-D-x-V-K-x(5)-K-G-Q-D 5: 60.5508 2( 2) G-Q-D-T-x(3)-R-x(0,2)-F-x(1,3)-G-Q-D-x-V-K-x(5)-K-G-Q-D 6: 56.3807 2( 2) Q-D-T-x(3)-R-x(0,2)-F-x(1,3)-G-Q-D-x-V-K-x(5)-K-G-Q-D 7: 52.2107 2( 2) D-T-x(3)-R-x(0,2)-V-x(1,3)-G-Q-D-x-V-K-G-x(4)-K-G-x-D 8: 49.0406 2( 2) A-x(4)-V-x(1,3)-G-Q-D-x-V-K-G-R-x(4)-G-Q-D 9: 48.0406 2( 2) V-x-G-Q-x(0,2)-V-x(0,2)-K-G-x(4)-K-x-Q-E-x-V-x(4)-S-x-K 10: 48.0406 2( 2) R-x(0,2)-V-x(1,3)-G-Q-D-x-V-K-G-x(4)-K-G-Q-D 11: 48.0406 2( 2) R-x(0,2)-F-x(1,3)-G-Q-D-x-V-K-G-x(4)-K-G-Q-D 12: 48.0406 2( 2) T-x(3)-R-x(0,2)-V-x(1,3)-G-Q-D-x-V-K-G-x(4)-K-G-x-D 13: 45.8706 2( 2) V-x-G-Q-D-x-V-K-G-R-x(4)-G-Q-D 14: 44.8706 3( 2) V-x(1,3)-G-Q-D-x-V-K-G-R-x(4)-G-Q-D 15: 44.8706 2( 2) V-x(3)-A-x(5)-E-x(1,2)-V-x(1,2)-G-x(2)-V-K-G-Q-x(3)-K-G 16: 44.8706 3( 2) V-x(2,3)-L-x(0,1)-A-x(5)-E-x(4)-G-x(2)-V-K-G-Q-x(3)-K-G 17: 43.8706 2( 2) S-V-K-G-Q-D-x(0,2)-K-x(3)-Q-x(1,3)-K-G-x(2)-S 18: 41.7005 2( 2) V-K-G-Q-D-x-V-K-G-x(5)-G-Q 19: 40.7005 3( 2) V-x(0,2)-K-G-Q-D-x-V-K-G-x(5)-G-Q 20: 40.2005 2( 2) G-x(3)-L-E-x(2,4)-V-x-G-x(2,3)-V-K-G-x(4)-K-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 144.6792 2( 2) A-[AE]-x(2)-[GS]-V-x(1,3)-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S B 2: 141.5340 2( 2) V-x-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S-x(2)-[EP]-x(2)-[CS] C 3: 140.5340 3( 2) V-x(1,3)-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S-x(2)-[EP]-x(2)-[CS] D 4: 140.2658 2( 2) V-K-G-Q-D-x-V-K-G-[HR]-[LV]-[PQ]-[FM]-x-G-Q-[DS]-[PS]-[LV]-x-[EG]-[QR]-[FV]-S-V-x-G-Q-D-x-V-K-[AG]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-[ST]-x(2)-[EP]-x(2)-[CS] E 5: 139.2658 3( 2) V-x(0,2)-K-G-Q-D-x-V-K-G-[HR]-[LV]-[PQ]-[FM]-x-G-Q-[DS]-[PS]-[LV]-x-[EG]-[QR]-[FV]-S-V-x-G-Q-D-x-V-K-[AG]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-[ST]-x(2)-[EP]-x(2)-[CS] F 6: 133.1372 2( 2) D-T-[LV]-x-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-x-D-x-[LV]-[EK]-[AE]-[QR]-x-[PS]-V-x-G-[PQ]-[DV]-S-[TV]-K-[GP]-[GL]-[AS]-x-[IP]-x-[GI] G 7: 132.0906 2( 2) K-G-Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] H 8: 129.0734 2( 2) V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-[LV]-x-[EG]-R-[FV]-[PS]-[FM]-[NT]-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV] I 9: 128.9671 2( 2) T-[LV]-x-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-x-D-x-[LV]-[EK]-[AE]-[QR]-x-[PS]-V-x-G-[PQ]-[DV]-S-[TV]-K-[GP]-[GL]-[AS]-x-[IP]-x-[GI] J 10: 127.9205 2( 2) G-Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] K 11: 126.6987 2( 2) L-[AI]-[AE]-x(3)-V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-[LV]-x-[EG]-R-[FV]-[PS]-[FM]-[NT]-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV] L 12: 123.7505 2( 2) Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] M 13: 121.0932 2( 2) D-x-[LV]-[EK]-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-x-[AV]-[RS]-[IV]-K-G-Q-[DE]-x-V-x-[AS]-[GQ]-x-[PS]-V-K-G-[PQ]-[GV]-S-x-K-[GP]-[GL] N 14: 110.9787 2( 2) G-x(2)-[LV]-L-E-x(2,4)-V-[ST]-G-x(2,3)-V-K-G-x-[AD]-x-[IV]-K-G-[QR]-x-[PS]-[FV]-[NQ]-[GS]-[GQ]-x-[PS]-V-K-G-Q-[GV]-S-[LV]-K-G O 15: 105.7813 2( 2) R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[PS] P 16: 105.7813 2( 2) R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[PS] Q 17: 104.7020 2( 2) V-x-G-Q-x(0,2)-V-x(0,2)-K-G-x-[AD]-[KR]-[IV]-K-[AG]-Q-E-[PS]-V-x-[GS]-[GP]-[FV]-S-[TV]-K-[GP]-[GQ]-[GS]-[CS]-[LP]-x-[GI]-L-I R 18: 82.4344 2( 2) S-V-K-G-Q-D-x(0,2)-K-[GV]-[HK]-[AL]-Q-x(1,3)-K-G-[PQ]-[SV]-S-x(2)-[EP]-x(2)-[CS]-[PV]-x-[GI]-x(2)-[RS]-[CV]-x(4)-[PQ] S 19: 76.8217 3( 2) V-x(2,3)-L-x(0,1)-A-x(3)-[GV]-x-E-[AS]-[AV]-x-[ST]-G-[FV]-[PS]-V-K-G-Q-[DG]-[ST]-[LV]-K-G-x-[IV] T 20: 73.7383 2( 2) V-x-[GL]-[IL]-A-x(3)-[GV]-x-E-x(1,2)-V-x(1,2)-G-[FV]-[PS]-V-K-G-Q-[DG]-[ST]-[LV]-K-G-x-[IV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 144.6792 2( 2) A-[AE]-x(2)-[GS]-V-x(1,3)-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S Occurences: 2(2) ELAF_HUMAN : 22- 70: tlvle AAvtGVpvkGQDTVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVS tkpgs SVP1_CAVPO : 231- 277: gqssl AErfSVt--GQDSVKGRLQMkGQDTLaERFSMtGQDsVKSRlQMKGQDS lserf B 2: 141.5340 2( 2) V-x-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S-x(2)-[EP]-x(2)-[CS] Occurences: 2(2) ELAF_HUMAN : 29- 76: vtgvp VkGQDTVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili SVP1_CAVPO : 236- 283: aerfs VtGQDSVKGRLQMkGQDTLaERFSMtGQDsVKSRlQMKGQDSlsErfS mtgqd C 3: 140.5340 3( 2) V-x(1,3)-G-Q-D-[ST]-V-K-G-R-[LV]-[PQ]-[FM]-x-G-Q-D-[PT]-[LV]-x-[EG]-[QR]-[FV]-S-[MV]-x-G-Q-D-x-V-K-[AS]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-S-x(2)-[EP]-x(2)-[CS] Occurences: 3(2) ELAF_HUMAN : 27- 76: aavtg VpvkGQDTVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili ELAF_HUMAN : 29- 76: vtgvp Vk--GQDTVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili SVP1_CAVPO : 236- 283: aerfs Vt--GQDSVKGRLQMkGQDTLaERFSMtGQDsVKSRlQMKGQDSlsErfS mtgqd D 4: 140.2658 2( 2) V-K-G-Q-D-x-V-K-G-[HR]-[LV]-[PQ]-[FM]-x-G-Q-[DS]-[PS]-[LV]-x-[EG]-[QR]-[FV]-S-V-x-G-Q-D-x-V-K-[AG]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-[ST]-x(2)-[EP]-x(2)-[CS] Occurences: 2(2) ELAF_HUMAN : 29- 76: vtgvp VKGQDtVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili SVP1_CAVPO : 212- 259: eerfs VKGQDlVKGHLQMkGQSSLaERFSVtGQDsVKGRlQMKGQDTlaErfS mtgqd E 5: 139.2658 3( 2) V-x(0,2)-K-G-Q-D-x-V-K-G-[HR]-[LV]-[PQ]-[FM]-x-G-Q-[DS]-[PS]-[LV]-x-[EG]-[QR]-[FV]-S-V-x-G-Q-D-x-V-K-[AG]-[QR]-x-[PQ]-[MV]-K-G-[PQ]-[DV]-[ST]-x(2)-[EP]-x(2)-[CS] Occurences: 3(2) ELAF_HUMAN : 27- 76: aavtg VpvKGQDtVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili ELAF_HUMAN : 29- 76: vtgvp V--KGQDtVKGRVPFnGQDPVkGQVSVkGQDkVKAQePVKGPVStkPgsC piili SVP1_CAVPO : 212- 259: eerfs V--KGQDlVKGHLQMkGQSSLaERFSVtGQDsVKGRlQMKGQDTlaErfS mtgqd F 6: 133.1372 2( 2) D-T-[LV]-x-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-x-D-x-[LV]-[EK]-[AE]-[QR]-x-[PS]-V-x-G-[PQ]-[DV]-S-[TV]-K-[GP]-[GL]-[AS]-x-[IP]-x-[GI] Occurences: 2(2) ELAF_HUMAN : 33- 79: pvkgq DTVkGR--VpfnGQDPVKGQVSVKGqDkVKAQePVkGPVSTKPGScPiI lirca SVP1_CAVPO : 324- 370: qmkgk DTLaERfsVt--GQDSVKGRLQMKGhDlLEERfSVsGQDSVKGLArIkG qesvq G 7: 132.0906 2( 2) K-G-Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] Occurences: 2(2) ELAF_HUMAN : 30- 73: tgvpv KGQDTVkGRvpFn--GQDPVKGQVSVKGQDkVkAQePVkGPVSTKP gscpi SVP1_CAVPO : 249- 292: grlqm KGQDTLaER--FsmtGQDSVKSRLQMKGQDsLsERfSMtGQDSVKG rlqmk H 8: 129.0734 2( 2) V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-[LV]-x-[EG]-R-[FV]-[PS]-[FM]-[NT]-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV] Occurences: 2(2) ELAF_HUMAN : 19- 65: iagtl Vleaa-VtGvpv-KGQDTVkGRVPFNGQDPVKGQVSVKGQDkVkAQePV kgpvs SVP1_CAVPO : 236- 284: aerfs VtgqdsVkGrlqmKGQDTLaERFSMTGQDSVKSRLQMKGQDsLsERfSM tgqds I 9: 128.9671 2( 2) T-[LV]-x-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-x-D-x-[LV]-[EK]-[AE]-[QR]-x-[PS]-V-x-G-[PQ]-[DV]-S-[TV]-K-[GP]-[GL]-[AS]-x-[IP]-x-[GI] Occurences: 2(2) ELAF_HUMAN : 34- 79: vkgqd TVkGR--VpfnGQDPVKGQVSVKGqDkVKAQePVkGPVSTKPGScPiI lirca SVP1_CAVPO : 325- 370: mkgkd TLaERfsVt--GQDSVKGRLQMKGhDlLEERfSVsGQDSVKGLArIkG qesvq J 10: 127.9205 2( 2) G-Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] Occurences: 2(2) ELAF_HUMAN : 31- 73: gvpvk GQDTVkGRvpFn--GQDPVKGQVSVKGQDkVkAQePVkGPVSTKP gscpi SVP1_CAVPO : 250- 292: rlqmk GQDTLaER--FsmtGQDSVKSRLQMKGQDsLsERfSMtGQDSVKG rlqmk K 11: 126.6987 2( 2) L-[AI]-[AE]-x(3)-V-x(4,5)-V-x-G-x(3,4)-K-G-Q-D-T-[LV]-x-[EG]-R-[FV]-[PS]-[FM]-[NT]-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV] Occurences: 2(2) ELAF_HUMAN : 13- 59: ivvvf LIAgtlVleaa-VtGvpv-KGQDTVkGRVPFNGQDPVKGQVSVKGQDkV kaqep SVP1_CAVPO : 230- 278: kgqss LAErfsVtgqdsVkGrlqmKGQDTLaERFSMTGQDSVKSRLQMKGQDsL serfs L 12: 123.7505 2( 2) Q-D-T-[LV]-x-[EG]-R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-[GS]-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[GP] Occurences: 2(2) ELAF_HUMAN : 32- 73: vpvkg QDTVkGRvpFn--GQDPVKGQVSVKGQDkVkAQePVkGPVSTKP gscpi SVP1_CAVPO : 251- 292: lqmkg QDTLaER--FsmtGQDSVKSRLQMKGQDsLsERfSMtGQDSVKG rlqmk M 13: 121.0932 2( 2) D-x-[LV]-[EK]-[EG]-R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-x-[AV]-[RS]-[IV]-K-G-Q-[DE]-x-V-x-[AS]-[GQ]-x-[PS]-V-K-G-[PQ]-[GV]-S-x-K-[GP]-[GL] Occurences: 2(2) ELAF_HUMAN : 33- 74: pvkgq DtVKGR--VpfnGQDPVKGqVSVKGQDkVkAQePVKGPVStKPG scpii SVP1_CAVPO : 348- 389: qmkgh DlLEERfsVs--GQDSVKGlARIKGQEsVqSGfSVKGQGSlKGL i N 14: 110.9787 2( 2) G-x(2)-[LV]-L-E-x(2,4)-V-[ST]-G-x(2,3)-V-K-G-x-[AD]-x-[IV]-K-G-[QR]-x-[PS]-[FV]-[NQ]-[GS]-[GQ]-x-[PS]-V-K-G-Q-[GV]-S-[LV]-K-G Occurences: 2(2) ELAF_HUMAN : 16- 55: vflia GtlVLEaa--VTGvp-VKGqDtVKGRvPFNGQdPVKGQVSVKG qdkvk SVP1_CAVPO : 346- 388: rlqmk GhdLLEerfsVSGqdsVKGlArIKGQeSVQSGfSVKGQGSLKG li O 15: 105.7813 2( 2) R-x(0,2)-V-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[PS] Occurences: 2(2) ELAF_HUMAN : 38- 73: dtvkg R--VpfnGQDPVKGQVSVKGQDkVkAQePVkGPVSTKP gscpi SVP1_CAVPO : 233- 268: sslae RfsVt--GQDSVKGRLQMKGQDtLaERfSMtGQDSVKS rlqmk P 16: 105.7813 2( 2) R-x(0,2)-F-x(1,3)-G-Q-D-[PS]-V-K-G-[QR]-[LV]-[QS]-[MV]-K-G-Q-D-x-[LV]-x-[AE]-[QR]-x-[PS]-[MV]-x-G-[PQ]-[DV]-S-[TV]-K-[PS] Occurences: 2(2) ELAF_HUMAN : 38- 73: dtvkg RvpFn--GQDPVKGQVSVKGQDkVkAQePVkGPVSTKP gscpi SVP1_CAVPO : 233- 268: sslae R--FsvtGQDSVKGRLQMKGQDtLaERfSMtGQDSVKS rlqmk Q 17: 104.7020 2( 2) V-x-G-Q-x(0,2)-V-x(0,2)-K-G-x-[AD]-[KR]-[IV]-K-[AG]-Q-E-[PS]-V-x-[GS]-[GP]-[FV]-S-[TV]-K-[GP]-[GQ]-[GS]-[CS]-[LP]-x-[GI]-L-I Occurences: 2(2) ELAF_HUMAN : 47- 81: ngqdp VkGQvsV--KGqDKVKAQEPVkGPVSTKPGSCPiILI rcaml ELAF_HUMAN : 47- 81: ngqdp VkGQ--VsvKGqDKVKAQEPVkGPVSTKPGSCPiILI rcaml SVP1_CAVPO : 356- 390: eerfs VsGQdsV--KGlARIKGQESVqSGFSVKGQGSLkGLI R 18: 82.4344 2( 2) S-V-K-G-Q-D-x(0,2)-K-[GV]-[HK]-[AL]-Q-x(1,3)-K-G-[PQ]-[SV]-S-x(2)-[EP]-x(2)-[CS]-[PV]-x-[GI]-x(2)-[RS]-[CV]-x(4)-[PQ] Occurences: 2(2) ELAF_HUMAN : 52- 88: vkgqv SVKGQD--KVKAQepvKGPVStkPgsCPiIliRCamlnP pnrcl SVP1_CAVPO : 211- 247: seerf SVKGQDlvKGHLQm--KGQSSlaErfSVtGqdSVkgrlQ mkgqd S 19: 76.8217 3( 2) V-x(2,3)-L-x(0,1)-A-x(3)-[GV]-x-E-[AS]-[AV]-x-[ST]-G-[FV]-[PS]-V-K-G-Q-[DG]-[ST]-[LV]-K-G-x-[IV] Occurences: 3(2) ELAF_HUMAN : 9- 39: ssfli VvvfLiAgtlVlEAAvTGVPVKGQDTVKGrV pfngq ELAF_HUMAN : 10- 39: sfliv Vvf-LiAgtlVlEAAvTGVPVKGQDTVKGrV pfngq SVP1_CAVPO : 362- 390: sgqds Vkg-L-ArikGqESVqSGFSVKGQGSLKGlI T 20: 73.7383 2( 2) V-x-[GL]-[IL]-A-x(3)-[GV]-x-E-x(1,2)-V-x(1,2)-G-[FV]-[PS]-V-K-G-Q-[DG]-[ST]-[LV]-K-G-x-[IV] Occurences: 2(2) ELAF_HUMAN : 11- 39: flivv VfLIAgtlVlEaaVt-GVPVKGQDTVKGrV pfngq SVP1_CAVPO : 362- 390: sgqds VkGLArikGqEs-VqsGFSVKGQGSLKGlI Number of patterns evaluated by Pratt:4778 Total running time: 1 seconds