------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file SURFACT_PALMYTOYL PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SURFACT_PALMYTOYL.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PSPC_BOVIN 34 PSPC_CANFA 34 PSPC_HUMAN 197 PSPC_MOUSE 193 PSPC_PIG 35 PSPC_RABIT 186 PSPC_RAT 194 Pratt run started at Thu Feb 6 21:16:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 99.0812 7( 7) P-x(0,1)-C-x(0,1)-P-x(3)-K-R-L-L-x(2)-V-V-V-x-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 2: 99.0812 7( 7) I-x(1,2)-C-x(0,1)-P-x(3)-K-R-L-L-x(2)-V-V-V-x-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 3: 74.5609 13( 7) L-x(3)-V-V-V-x(0,1)-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 4: 74.0609 13( 7) L-x(3,4)-V-V-V-x(0,1)-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 5: 65.7208 19( 7) V-V-V-x(0,2)-L-x-V-V-V-I-V-G-A-L-L-M-G-L 6: 62.5508 7( 7) V-x(2)-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 7: 62.5508 7( 7) V-x(3)-V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 8: 62.0508 7( 7) I-P-C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x-V-x(3)-V-V-x(5)-L 9: 61.5508 19( 7) V-V-x(0,2)-L-x-V-V-V-I-V-G-A-L-L-M-G-L 10: 61.5508 7( 7) I-P-C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-x-V-x(2)-V-x-V 11: 58.3807 7( 7) V-L-x-V-V-V-I-V-G-A-L-L-M-G-L 12: 57.8807 7( 7) P-C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x-V-x(3)-V-V-x(5)-L 13: 57.3807 7( 7) P-C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-x-V-x(2)-V-x-V 14: 54.2107 7( 7) L-x-V-V-V-I-V-G-A-L-L-M-G-L 15: 53.7107 8( 7) L-x(0,1)-V-V-V-I-V-G-A-L-L-M-G-L 16: 53.7107 7( 7) C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x-V-x(3)-V-V-x(5)-L 17: 53.2107 13( 7) C-x(0,1)-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x-V-x(3)-V-V-x(5)-L 18: 53.2107 7( 7) C-x-P-x(3)-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-x-V-x(2)-V-x-V 19: 50.0406 7( 7) V-V-V-I-V-G-A-L-L-M-G-L 20: 49.5406 7( 7) P-x(3)-K-R-L-L-x(1,2)-V-V-V-x-V-x(3)-V-V-x(5)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 117.8753 7( 7) P-x(0,1)-C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-[IV]-[IV]-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L B 2: 117.8753 7( 7) I-x(1,2)-C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-[IV]-[IV]-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L C 3: 116.0956 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L D 4: 111.9256 7( 7) P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L E 5: 107.7555 7( 7) C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L F 6: 107.2555 13( 7) C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L G 7: 103.3892 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] H 8: 99.2192 7( 7) P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] I 9: 97.1278 7( 7) P-x(3)-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L J 10: 95.0491 7( 7) C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] K 11: 87.8425 7( 7) L-L-[IV]-[IV]-V-V-V-x(0,1)-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L L 12: 76.7776 7( 7) V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L M 13: 76.7228 13( 7) L-x(3,4)-V-V-V-x(0,1)-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L N 14: 72.6075 7( 7) V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L O 15: 68.3827 19( 7) V-V-V-x(0,2)-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L P 16: 64.2126 19( 7) V-V-x(0,2)-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Q 17: 61.0426 7( 7) V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L R 18: 56.8725 7( 7) L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L S 19: 55.4982 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V T 20: 53.7107 8( 7) L-x(0,1)-V-V-V-I-V-G-A-L-L-M-G-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 117.8753 7( 7) P-x(0,1)-C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-[IV]-[IV]-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 3- 34: li PcC-PVnIKRLLIVVVVVVLLVVVIVGALLMGL PSPC_BOVIN : 3- 34: li P-CcPVnIKRLLIVVVVVVLLVVVIVGALLMGL PSPC_CANFA : 3- 34: gi P-CfPSsLKRLLIIVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 27- 58: grfgi PcC-PVhLKRLLIVVVVVVLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 27- 58: grfgi P-CcPVhLKRLLIVVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 27- 58: sqfri PcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 27- 58: sqfri P-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 4- 35: lri PcC-PVnLKRLLVVVVVVVLVVVVIVGALLMGL PSPC_PIG : 4- 35: lri P-CcPVnLKRLLVVVVVVVLVVVVIVGALLMGL PSPC_RABIT : 25- 56: grfgi PcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RABIT : 25- 56: grfgi P-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 27- 58: sqfri PcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 27- 58: sqfri P-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk B 2: 117.8753 7( 7) I-x(1,2)-C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-[IV]-[IV]-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 2- 34: l IpcC-PVnIKRLLIVVVVVVLLVVVIVGALLMGL PSPC_BOVIN : 2- 34: l Ip-CcPVnIKRLLIVVVVVVLLVVVIVGALLMGL PSPC_CANFA : 2- 34: g Ip-CfPSsLKRLLIIVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 26- 58: rgrfg IpcC-PVhLKRLLIVVVVVVLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 26- 58: rgrfg Ip-CcPVhLKRLLIVVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 26- 58: rsqfr IpcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 26- 58: rsqfr Ip-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 3- 35: lr IpcC-PVnLKRLLVVVVVVVLVVVVIVGALLMGL PSPC_PIG : 3- 35: lr Ip-CcPVnLKRLLVVVVVVVLVVVVIVGALLMGL PSPC_RABIT : 24- 56: rgrfg IpcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RABIT : 24- 56: rgrfg Ip-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 26- 58: rsqfr IpcC-PVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 26- 58: rsqfr Ip-CcPVhLKRLLIVVVVVVLVVVVIVGALLMGL hmsqk C 3: 116.0956 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 2- 34: l IPCcPVnIKRLLivVVVVVLLVVVIVGALLMGL PSPC_CANFA : 2- 34: g IPCfPSsLKRLLiiVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 26- 58: rgrfg IPCcPVhLKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 26- 58: rsqfr IPCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 3- 35: lr IPCcPVnLKRLLvvVVVVVLVVVVIVGALLMGL PSPC_RABIT : 24- 56: rgrfg IPCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 26- 58: rsqfr IPCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk D 4: 111.9256 7( 7) P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 3- 34: li PCcPVnIKRLLivVVVVVLLVVVIVGALLMGL PSPC_CANFA : 3- 34: gi PCfPSsLKRLLiiVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 27- 58: grfgi PCcPVhLKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 27- 58: sqfri PCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 4- 35: lri PCcPVnLKRLLvvVVVVVLVVVVIVGALLMGL PSPC_RABIT : 25- 56: grfgi PCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 27- 58: sqfri PCcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk E 5: 107.7555 7( 7) C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 4- 34: lip CcPVnIKRLLivVVVVVLLVVVIVGALLMGL PSPC_CANFA : 4- 34: gip CfPSsLKRLLiiVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 28- 58: rfgip CcPVhLKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 28- 58: qfrip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 5- 35: lrip CcPVnLKRLLvvVVVVVLVVVVIVGALLMGL PSPC_RABIT : 26- 56: rfgip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 28- 58: qfrip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk F 6: 107.2555 13( 7) C-x(0,1)-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 13(7) PSPC_BOVIN : 4- 34: lip CcPVnIKRLLivVVVVVLLVVVIVGALLMGL PSPC_BOVIN : 5- 34: lipc C-PVnIKRLLivVVVVVLLVVVIVGALLMGL PSPC_CANFA : 4- 34: gip CfPSsLKRLLiiVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 28- 58: rfgip CcPVhLKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 29- 58: fgipc C-PVhLKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 28- 58: qfrip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 29- 58: fripc C-PVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 5- 35: lrip CcPVnLKRLLvvVVVVVLVVVVIVGALLMGL PSPC_PIG : 6- 35: lripc C-PVnLKRLLvvVVVVVLVVVVIVGALLMGL PSPC_RABIT : 26- 56: rfgip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RABIT : 27- 56: fgipc C-PVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 28- 58: qfrip CcPVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 29- 58: fripc C-PVhLKRLLivVVVVVLVVVVIVGALLMGL hmsqk G 7: 103.3892 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] Occurences: 7(7) PSPC_BOVIN : 2- 32: l IPCcPVnIKRLLi-VVV-VVVLLVVVIVGALLM gl PSPC_CANFA : 2- 34: g IPCfPSsLKRLLiiVVViVLVVVVIVGALLMGL PSPC_HUMAN : 26- 56: rgrfg IPCcPVhLKRLLi-VVV-VVVLIVVVIVGALLM glhms PSPC_MOUSE : 26- 56: rsqfr IPCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_MOUSE : 26- 58: rsqfr IPCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_PIG : 3- 33: lr IPCcPVnLKRLLv-VVV-VVVLVVVVIVGALLM gl PSPC_PIG : 3- 35: lr IPCcPVnLKRLLvvVVVvVLVVVVIVGALLMGL PSPC_RABIT : 24- 54: rgrfg IPCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RABIT : 24- 56: rgrfg IPCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_RAT : 26- 56: rsqfr IPCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RAT : 26- 58: rsqfr IPCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk H 8: 99.2192 7( 7) P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] Occurences: 7(7) PSPC_BOVIN : 3- 32: li PCcPVnIKRLLi-VVV-VVVLLVVVIVGALLM gl PSPC_CANFA : 3- 34: gi PCfPSsLKRLLiiVVViVLVVVVIVGALLMGL PSPC_HUMAN : 27- 56: grfgi PCcPVhLKRLLi-VVV-VVVLIVVVIVGALLM glhms PSPC_MOUSE : 27- 56: sqfri PCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_MOUSE : 27- 58: sqfri PCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_PIG : 4- 33: lri PCcPVnLKRLLv-VVV-VVVLVVVVIVGALLM gl PSPC_PIG : 4- 35: lri PCcPVnLKRLLvvVVVvVLVVVVIVGALLMGL PSPC_RABIT : 25- 54: grfgi PCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RABIT : 25- 56: grfgi PCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_RAT : 27- 56: sqfri PCcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RAT : 27- 58: sqfri PCcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk I 9: 97.1278 7( 7) P-x(3)-K-R-L-L-x(1,2)-V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 6- 34: lipcc PvniKRLLivVVVVVLLVVVIVGALLMGL PSPC_CANFA : 6- 34: gipcf PsslKRLLiiVVVIVLVVVVIVGALLMGL PSPC_HUMAN : 30- 58: gipcc PvhlKRLLivVVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 30- 58: ripcc PvhlKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 7- 35: ripcc PvnlKRLLvvVVVVVLVVVVIVGALLMGL PSPC_RABIT : 28- 56: gipcc PvhlKRLLivVVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 30- 58: ripcc PvhlKRLLivVVVVVLVVVVIVGALLMGL hmsqk J 10: 95.0491 7( 7) C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V-[LV]-V-[LV]-[ILV]-V-[IV]-V-[GI]-[AV]-[GL]-[AL]-[LM]-[GL]-[LM] Occurences: 7(7) PSPC_BOVIN : 4- 32: lip CcPVnIKRLLi-VVV-VVVLLVVVIVGALLM gl PSPC_CANFA : 4- 34: gip CfPSsLKRLLiiVVViVLVVVVIVGALLMGL PSPC_HUMAN : 28- 56: rfgip CcPVhLKRLLi-VVV-VVVLIVVVIVGALLM glhms PSPC_MOUSE : 28- 56: qfrip CcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_MOUSE : 28- 58: qfrip CcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_PIG : 5- 33: lrip CcPVnLKRLLv-VVV-VVVLVVVVIVGALLM gl PSPC_PIG : 5- 35: lrip CcPVnLKRLLvvVVVvVLVVVVIVGALLMGL PSPC_RABIT : 26- 54: rfgip CcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RABIT : 26- 56: rfgip CcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk PSPC_RAT : 28- 56: qfrip CcPVhLKRLLi-VVV-VVVLVVVVIVGALLM glhms PSPC_RAT : 28- 58: qfrip CcPVhLKRLLivVVVvVLVVVVIVGALLMGL hmsqk K 11: 87.8425 7( 7) L-L-[IV]-[IV]-V-V-V-x(0,1)-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 12- 34: vnikr LLIVVVVvVLLVVVIVGALLMGL PSPC_CANFA : 12- 34: sslkr LLIIVVViVLVVVVIVGALLMGL PSPC_HUMAN : 36- 58: vhlkr LLIVVVVvVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 36- 58: vhlkr LLIVVVVvVLVVVVIVGALLMGL hmsqk PSPC_PIG : 13- 35: vnlkr LLVVVVVvVLVVVVIVGALLMGL PSPC_RABIT : 34- 56: vhlkr LLIVVVVvVLVVVVIVGALLMGL hmsqk PSPC_RAT : 36- 58: vhlkr LLIVVVVvVLVVVVIVGALLMGL hmsqk L 12: 76.7776 7( 7) V-V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 16- 34: rlliv VVVVVLLVVVIVGALLMGL PSPC_CANFA : 16- 34: rllii VVVIVLVVVVIVGALLMGL PSPC_HUMAN : 40- 58: rlliv VVVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 40- 58: rlliv VVVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 17- 35: rllvv VVVVVLVVVVIVGALLMGL PSPC_RABIT : 38- 56: rlliv VVVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 40- 58: rlliv VVVVVLVVVVIVGALLMGL hmsqk M 13: 76.7228 13( 7) L-x(3,4)-V-V-V-x(0,1)-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 13(7) PSPC_BOVIN : 12- 34: vnikr LlivvVVV-VLLVVVIVGALLMGL PSPC_BOVIN : 12- 34: vnikr Lliv-VVVvVLLVVVIVGALLMGL PSPC_BOVIN : 13- 34: nikrl Livv-VVV-VLLVVVIVGALLMGL PSPC_CANFA : 12- 34: sslkr Llii-VVViVLVVVVIVGALLMGL PSPC_HUMAN : 36- 58: vhlkr LlivvVVV-VLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 36- 58: vhlkr Lliv-VVVvVLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 37- 58: hlkrl Livv-VVV-VLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 36- 58: vhlkr LlivvVVV-VLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 36- 58: vhlkr Lliv-VVVvVLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 37- 58: hlkrl Livv-VVV-VLVVVVIVGALLMGL hmsqk PSPC_PIG : 13- 35: vnlkr LlvvvVVV-VLVVVVIVGALLMGL PSPC_PIG : 13- 35: vnlkr Llvv-VVVvVLVVVVIVGALLMGL PSPC_PIG : 14- 35: nlkrl Lvvv-VVV-VLVVVVIVGALLMGL PSPC_RABIT : 34- 56: vhlkr LlivvVVV-VLVVVVIVGALLMGL hmsqk PSPC_RABIT : 34- 56: vhlkr Lliv-VVVvVLVVVVIVGALLMGL hmsqk PSPC_RABIT : 35- 56: hlkrl Livv-VVV-VLVVVVIVGALLMGL hmsqk PSPC_RAT : 36- 58: vhlkr LlivvVVV-VLVVVVIVGALLMGL hmsqk PSPC_RAT : 36- 58: vhlkr Lliv-VVVvVLVVVVIVGALLMGL hmsqk PSPC_RAT : 37- 58: hlkrl Livv-VVV-VLVVVVIVGALLMGL hmsqk N 14: 72.6075 7( 7) V-V-[IV]-V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 17- 34: llivv VVVVLLVVVIVGALLMGL PSPC_CANFA : 17- 34: lliiv VVIVLVVVVIVGALLMGL PSPC_HUMAN : 41- 58: llivv VVVVLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 41- 58: llivv VVVVLVVVVIVGALLMGL hmsqk PSPC_PIG : 18- 35: llvvv VVVVLVVVVIVGALLMGL PSPC_RABIT : 39- 56: llivv VVVVLVVVVIVGALLMGL hmsqk PSPC_RAT : 41- 58: llivv VVVVLVVVVIVGALLMGL hmsqk O 15: 68.3827 19( 7) V-V-V-x(0,2)-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 19(7) PSPC_BOVIN : 16- 34: rlliv VVVvvLLVVVIVGALLMGL PSPC_BOVIN : 17- 34: llivv VVVv-LLVVVIVGALLMGL PSPC_BOVIN : 18- 34: livvv VVV--LLVVVIVGALLMGL PSPC_CANFA : 16- 34: rllii VVVivLVVVVIVGALLMGL PSPC_HUMAN : 40- 58: rlliv VVVvvLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 41- 58: llivv VVVv-LIVVVIVGALLMGL hmsqk PSPC_HUMAN : 42- 58: livvv VVV--LIVVVIVGALLMGL hmsqk PSPC_MOUSE : 40- 58: rlliv VVVvvLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 41- 58: llivv VVVv-LVVVVIVGALLMGL hmsqk PSPC_MOUSE : 42- 58: livvv VVV--LVVVVIVGALLMGL hmsqk PSPC_PIG : 17- 35: rllvv VVVvvLVVVVIVGALLMGL PSPC_PIG : 18- 35: llvvv VVVv-LVVVVIVGALLMGL PSPC_PIG : 19- 35: lvvvv VVV--LVVVVIVGALLMGL PSPC_RABIT : 38- 56: rlliv VVVvvLVVVVIVGALLMGL hmsqk PSPC_RABIT : 39- 56: llivv VVVv-LVVVVIVGALLMGL hmsqk PSPC_RABIT : 40- 56: livvv VVV--LVVVVIVGALLMGL hmsqk PSPC_RAT : 40- 58: rlliv VVVvvLVVVVIVGALLMGL hmsqk PSPC_RAT : 41- 58: llivv VVVv-LVVVVIVGALLMGL hmsqk PSPC_RAT : 42- 58: livvv VVV--LVVVVIVGALLMGL hmsqk P 16: 64.2126 19( 7) V-V-x(0,2)-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 19(7) PSPC_BOVIN : 17- 34: llivv VVvvLLVVVIVGALLMGL PSPC_BOVIN : 18- 34: livvv VVv-LLVVVIVGALLMGL PSPC_BOVIN : 19- 34: ivvvv VV--LLVVVIVGALLMGL PSPC_CANFA : 17- 34: lliiv VVivLVVVVIVGALLMGL PSPC_HUMAN : 41- 58: llivv VVvvLIVVVIVGALLMGL hmsqk PSPC_HUMAN : 42- 58: livvv VVv-LIVVVIVGALLMGL hmsqk PSPC_HUMAN : 43- 58: ivvvv VV--LIVVVIVGALLMGL hmsqk PSPC_MOUSE : 41- 58: llivv VVvvLVVVVIVGALLMGL hmsqk PSPC_MOUSE : 42- 58: livvv VVv-LVVVVIVGALLMGL hmsqk PSPC_MOUSE : 43- 58: ivvvv VV--LVVVVIVGALLMGL hmsqk PSPC_PIG : 18- 35: llvvv VVvvLVVVVIVGALLMGL PSPC_PIG : 19- 35: lvvvv VVv-LVVVVIVGALLMGL PSPC_PIG : 20- 35: vvvvv VV--LVVVVIVGALLMGL PSPC_RABIT : 39- 56: llivv VVvvLVVVVIVGALLMGL hmsqk PSPC_RABIT : 40- 56: livvv VVv-LVVVVIVGALLMGL hmsqk PSPC_RABIT : 41- 56: ivvvv VV--LVVVVIVGALLMGL hmsqk PSPC_RAT : 41- 58: llivv VVvvLVVVVIVGALLMGL hmsqk PSPC_RAT : 42- 58: livvv VVv-LVVVVIVGALLMGL hmsqk PSPC_RAT : 43- 58: ivvvv VV--LVVVVIVGALLMGL hmsqk Q 17: 61.0426 7( 7) V-L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 20- 34: vvvvv VLLVVVIVGALLMGL PSPC_CANFA : 20- 34: ivvvi VLVVVVIVGALLMGL PSPC_HUMAN : 44- 58: vvvvv VLIVVVIVGALLMGL hmsqk PSPC_MOUSE : 44- 58: vvvvv VLVVVVIVGALLMGL hmsqk PSPC_PIG : 21- 35: vvvvv VLVVVVIVGALLMGL PSPC_RABIT : 42- 56: vvvvv VLVVVVIVGALLMGL hmsqk PSPC_RAT : 44- 58: vvvvv VLVVVVIVGALLMGL hmsqk R 18: 56.8725 7( 7) L-[ILV]-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 7(7) PSPC_BOVIN : 21- 34: vvvvv LLVVVIVGALLMGL PSPC_CANFA : 21- 34: vvviv LVVVVIVGALLMGL PSPC_HUMAN : 45- 58: vvvvv LIVVVIVGALLMGL hmsqk PSPC_MOUSE : 45- 58: vvvvv LVVVVIVGALLMGL hmsqk PSPC_PIG : 22- 35: vvvvv LVVVVIVGALLMGL PSPC_RABIT : 43- 56: vvvvv LVVVVIVGALLMGL hmsqk PSPC_RAT : 45- 58: vvvvv LVVVVIVGALLMGL hmsqk S 19: 55.4982 7( 7) I-P-C-x-P-[SV]-x-[IL]-K-R-L-L-x(1,2)-V-V-V-x(0,1)-V Occurences: 7(7) PSPC_BOVIN : 2- 18: l IPCcPVnIKRLLi-VVV-V vvllv PSPC_CANFA : 2- 20: g IPCfPSsLKRLLiiVVViV lvvvv PSPC_HUMAN : 26- 42: rgrfg IPCcPVhLKRLLi-VVV-V vvliv PSPC_MOUSE : 26- 42: rsqfr IPCcPVhLKRLLi-VVV-V vvlvv PSPC_MOUSE : 26- 44: rsqfr IPCcPVhLKRLLivVVVvV lvvvv PSPC_PIG : 3- 19: lr IPCcPVnLKRLLv-VVV-V vvlvv PSPC_PIG : 3- 21: lr IPCcPVnLKRLLvvVVVvV lvvvv PSPC_RABIT : 24- 40: rgrfg IPCcPVhLKRLLi-VVV-V vvlvv PSPC_RABIT : 24- 42: rgrfg IPCcPVhLKRLLivVVVvV lvvvv PSPC_RAT : 26- 42: rsqfr IPCcPVhLKRLLi-VVV-V vvlvv PSPC_RAT : 26- 44: rsqfr IPCcPVhLKRLLivVVVvV lvvvv T 20: 53.7107 8( 7) L-x(0,1)-V-V-V-I-V-G-A-L-L-M-G-L Occurences: 8(7) PSPC_BOVIN : 21- 34: vvvvv LlVVVIVGALLMGL PSPC_BOVIN : 22- 34: vvvvl L-VVVIVGALLMGL PSPC_CANFA : 21- 34: vvviv LvVVVIVGALLMGL PSPC_HUMAN : 45- 58: vvvvv LiVVVIVGALLMGL hmsqk PSPC_MOUSE : 45- 58: vvvvv LvVVVIVGALLMGL hmsqk PSPC_PIG : 22- 35: vvvvv LvVVVIVGALLMGL PSPC_RABIT : 43- 56: vvvvv LvVVVIVGALLMGL hmsqk PSPC_RAT : 45- 58: vvvvv LvVVVIVGALLMGL hmsqk Number of patterns evaluated by Pratt:1213 Total running time: 0 seconds