------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file SUI1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SUI1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SUI1_ANOGA 110 SUI1_ARATH 113 SUI1_HUMAN 113 SUI1_ORYSA 115 SUI1_YEAST 108 YCIH_ECOLI 108 YCIH_HAEIN 106 YCIH_SALTY 108 YRP1_METVA 102 Pratt run started at Thu Feb 6 21:16:18 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 11( 9) I-x(2)-Q-x(3,4)-R-K 2: 15.6802 9( 9) K-x(4)-C-x(0,1)-G-x(1,2)-V 3: 15.6802 10( 9) K-x(4)-C-x(1,2)-G-x(1,2)-V 4: 15.6802 9( 9) K-K-x(3,4)-C-x(1,2)-G 5: 15.1802 14( 9) K-x(0,2)-K-x(3,4)-C-x-G 6: 12.5102 9( 9) Q-G-x(2)-R 7: 12.5102 12( 9) Q-x(3)-R-K 8: 12.0102 9( 9) C-x-G-x(1,2)-V 9: 12.0102 10( 9) K-x(1,2)-L-x-K 10: 12.0102 9( 9) R-x(3)-K-x(0,1)-L 11: 11.5102 11( 9) G-x(1,2)-K-x(3,4)-V 12: 11.5102 11( 9) G-D-x(1,3)-R 13: 11.5102 12( 9) G-x(0,2)-R-K 14: 11.5102 9( 9) C-x(0,1)-G-x(1,2)-V 15: 11.5102 15( 9) C-x(1,2)-G-x(1,2)-V 16: 11.5102 17( 9) K-x(2,3)-C-x(1,2)-G 17: 11.5102 14( 9) K-x(0,1)-K-x(2,3)-C 18: 11.5102 11( 9) L-x(3,5)-L-K 19: 11.5102 11( 9) R-x(2,3)-K-x(0,1)-L 20: 11.5102 11( 9) K-x(3,4)-K-x(2,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 36.1668 12( 9) K-x(2,3)-C-x(1,2)-G-[AGNT]-x-[IV]-x(2)-[DGPS]-x(2)-[EG]-x(2)-[GIL]-[DEQ]-x-[QR]-x(3)-[EKR]-x(2)-[ILV] B 2: 26.5419 9( 9) Q-G-[DE]-x-R-x(2)-[AILV]-x-[ENQST]-x-[LM]-x(3)-[GL] C 3: 24.3322 14( 9) K-x(0,2)-K-x(3,4)-C-[GN]-G-[ANT]-[IV] D 4: 22.0969 9( 9) K-[DK]-x(2)-[ACG]-C-x-G-x(1,2)-V E 5: 21.5969 9( 9) K-[DK]-x(2)-[ACG]-C-x(0,1)-G-x(1,2)-V F 6: 18.7742 11( 9) I-[EQR]-x-Q-x(3,4)-R-K G 7: 18.7658 12( 9) K-x(0,1)-K-x(2,3)-C-[ACGN]-[CGN]-[AGNT] H 8: 17.9161 9( 9) K-K-x(3,4)-C-x(1,2)-G-[AGNT] I 9: 17.7737 9( 9) R-[DNR]-x(2)-K-x(0,1)-L-x-[ET] J 10: 15.2832 9( 9) C-[GN]-G-x(1,2)-V K 11: 15.1351 12( 9) Q-x-[DNS]-x-R-K L 12: 14.6852 10( 9) R-x(2,3)-K-x(0,1)-L-x-[ET] M 13: 13.3949 11( 9) G-D-x(1,3)-R-x(4)-[ENQST] N 14: 12.0102 10( 9) K-x(1,2)-L-x-K O 15: 11.5102 11( 9) G-x(1,2)-K-x(3,4)-V P 16: 11.5102 12( 9) G-x(0,2)-R-K Q 17: 11.5102 9( 9) C-x(0,1)-G-x(1,2)-V R 18: 11.5102 15( 9) C-x(1,2)-G-x(1,2)-V S 19: 11.5102 11( 9) L-x(3,5)-L-K T 20: 11.5102 11( 9) R-x(2,3)-K-x(0,1)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 36.1668 12( 9) K-x(2,3)-C-x(1,2)-G-[AGNT]-x-[IV]-x(2)-[DGPS]-x(2)-[EG]-x(2)-[GIL]-[DEQ]-x-[QR]-x(3)-[EKR]-x(2)-[ILV] Occurences: 12(9) SUI1_ANOGA : 62- 90: vrack KefaCn-GTvIehPeyGevLQlQgdqRenI cqwlt SUI1_ARATH : 64- 93: ilkxl KkefCcnGTvVqdSelGqvIQlQgdqRknV stflv SUI1_ARATH : 65- 93: lkxlk KefcCn-GTvVqdSelGqvIQlQgdqRknV stflv SUI1_ARATH : 65- 93: lkxlk Kef-CcnGTvVqdSelGqvIQlQgdqRknV stflv SUI1_HUMAN : 65- 93: vkafk KkfaCn-GTvIehPeyGevIQlQgdqRknI cqflv SUI1_HUMAN : 66- 93: kafkk Kfa-Cn-GTvIehPeyGevIQlQgdqRknI cqflv SUI1_ORYSA : 66- 95: ilkdl KkefCcnGTvVqdPelGqvIQlQgdqRknV snflv SUI1_ORYSA : 67- 95: lkdlk KefcCn-GTvVqdPelGqvIQlQgdqRknV snflv SUI1_ORYSA : 67- 95: lkdlk Kef-CcnGTvVqdPelGqvIQlQgdqRknV snflv SUI1_YEAST : 60- 88: lkvlk KdfaCn-GNiVkdPemGeiIQlQgdqRakV cefmi YCIH_ECOLI : 68- 96: laael Kkk-CgcGGaVkdGviEiqGDkRdllKslL eakgm YCIH_HAEIN : 66- 94: laael Kkr-CgcGGaVknGiiEiqGEkRdllKqlL eqkgf YCIH_SALTY : 68- 96: laael Kkk-CgcGGaVkeGiiEiqGDkRdliKslL eakgm YRP1_METVA : 61- 89: lakkl Kdi-CacGGtVkkDsiElqGDhRkkaEeiL ikmgf B 2: 26.5419 9( 9) Q-G-[DE]-x-R-x(2)-[AILV]-x-[ENQST]-x-[LM]-x(3)-[GL] Occurences: 9(9) SUI1_ANOGA : 83- 98: evlql QGDqRenIcQwLtksG lakpe SUI1_ARATH : 86- 101: qviql QGDqRknVsTfLvqaG lvkkd SUI1_HUMAN : 86- 101: eviql QGDqRknIcQfLveiG lakdd SUI1_ORYSA : 88- 103: qviql QGDqRknVsNfLvqaG ivkke SUI1_YEAST : 81- 96: eiiql QGDqRakVcEfMisqL glqkk YCIH_ECOLI : 85- 100: gviei QGDkRdlLkSlLeakG mkvkl YCIH_HAEIN : 83- 98: giiei QGEkRdlLkQlLeqkG fkvkl YCIH_SALTY : 85- 100: giiei QGDkRdlIkSlLeakG mkvkl YRP1_METVA : 78- 93: dsiel QGDhRkkAeEiLikmG fskdm C 3: 24.3322 14( 9) K-x(0,2)-K-x(3,4)-C-[GN]-G-[ANT]-[IV] Occurences: 14(9) SUI1_ANOGA : 61- 70: ivrac K--Kefa-CNGTV iehpe SUI1_ARATH : 61- 73: ytkil KxlKkefcCNGTV vqdse SUI1_ARATH : 64- 73: ilkxl K--Kefc-CNGTV vqdse SUI1_HUMAN : 61- 73: kkklv KafKkkfaCNGTV iehpe SUI1_HUMAN : 64- 73: lvkaf K--Kkfa-CNGTV iehpe SUI1_ORYSA : 63- 75: ynkil KdlKkefcCNGTV vqdpe SUI1_ORYSA : 66- 75: ilkdl K--Kefc-CNGTV vqdpe SUI1_YEAST : 56- 68: lkril KvlKkdfaCNGNI vkdpe SUI1_YEAST : 59- 68: ilkvl K--Kdfa-CNGNI vkdpe YCIH_ECOLI : 68- 77: laael K--Kkcg-CGGAV kdgvi YCIH_HAEIN : 66- 75: laael K--Krcg-CGGAV kngii YCIH_SALTY : 68- 77: laael K--Kkcg-CGGAV kegii YRP1_METVA : 58- 70: vkdla KklKdicaCGGTV kkdsi YRP1_METVA : 59- 70: kdlak Kl-KdicaCGGTV kkdsi D 4: 22.0969 9( 9) K-[DK]-x(2)-[ACG]-C-x-G-x(1,2)-V Occurences: 9(9) SUI1_ANOGA : 61- 70: ivrac KKefACnGt-V iehpe SUI1_ARATH : 64- 73: ilkxl KKefCCnGt-V vqdse SUI1_ARATH : 64- 74: ilkxl KKefCCnGtvV qdsel SUI1_HUMAN : 64- 73: lvkaf KKkfACnGt-V iehpe SUI1_ORYSA : 66- 75: ilkdl KKefCCnGt-V vqdpe SUI1_ORYSA : 66- 76: ilkdl KKefCCnGtvV qdpel SUI1_YEAST : 59- 69: ilkvl KKdfACnGniV kdpem YCIH_ECOLI : 68- 77: laael KKkcGCgGa-V kdgvi YCIH_HAEIN : 66- 75: laael KKrcGCgGa-V kngii YCIH_SALTY : 68- 77: laael KKkcGCgGa-V kegii YRP1_METVA : 61- 70: lakkl KDicACgGt-V kkdsi E 5: 21.5969 9( 9) K-[DK]-x(2)-[ACG]-C-x(0,1)-G-x(1,2)-V Occurences: 9(9) SUI1_ANOGA : 61- 70: ivrac KKefACnGt-V iehpe SUI1_ARATH : 64- 73: ilkxl KKefCCnGt-V vqdse SUI1_ARATH : 64- 74: ilkxl KKefCCnGtvV qdsel SUI1_HUMAN : 64- 73: lvkaf KKkfACnGt-V iehpe SUI1_ORYSA : 66- 75: ilkdl KKefCCnGt-V vqdpe SUI1_ORYSA : 66- 76: ilkdl KKefCCnGtvV qdpel SUI1_YEAST : 59- 69: ilkvl KKdfACnGniV kdpem YCIH_ECOLI : 68- 77: laael KKkcGCgGa-V kdgvi YCIH_ECOLI : 68- 77: laael KKkcGC-GgaV kdgvi YCIH_HAEIN : 66- 75: laael KKrcGCgGa-V kngii YCIH_HAEIN : 66- 75: laael KKrcGC-GgaV kngii YCIH_SALTY : 68- 77: laael KKkcGCgGa-V kegii YCIH_SALTY : 68- 77: laael KKkcGC-GgaV kegii YRP1_METVA : 61- 70: lakkl KDicACgGt-V kkdsi YRP1_METVA : 61- 70: lakkl KDicAC-GgtV kkdsi F 6: 18.7742 11( 9) I-[EQR]-x-Q-x(3,4)-R-K Occurences: 11(9) SUI1_ANOGA : 30- 39: dglvh IRiQqrngRK tlttv SUI1_ARATH : 33- 42: keyvh IRxQqrngRK slttv SUI1_ARATH : 83- 91: elgqv IQlQgdq-RK nvstf SUI1_HUMAN : 33- 42: edyih IRiQqrngRK tlttv SUI1_HUMAN : 83- 91: eygev IQlQgdq-RK nicqf SUI1_ORYSA : 85- 93: elgqv IQlQgdq-RK nvsnf SUI1_YEAST : 28- 37: snyih IRiQqrngRK tlttv YCIH_ECOLI : 35- 43: dgvvr IQrQtsg-RK gkgvc YCIH_HAEIN : 33- 41: dgvvr IQkQtsg-RK gagvs YCIH_SALTY : 35- 43: dgivr IQrQtsg-RK gkgvc YRP1_METVA : 75- 83: vkkds IElQgdh-RK kaeei G 7: 18.7658 12( 9) K-x(0,1)-K-x(2,3)-C-[ACGN]-[CGN]-[AGNT] Occurences: 12(9) SUI1_ANOGA : 61- 69: ivrac K-KefaCNGT viehp SUI1_ARATH : 64- 71: ilkxl K-Kef-CCNG tvvqd SUI1_ARATH : 64- 72: ilkxl K-KefcCNGT vvqds SUI1_HUMAN : 64- 72: lvkaf KkKfa-CNGT viehp SUI1_HUMAN : 64- 72: lvkaf K-KkfaCNGT viehp SUI1_HUMAN : 65- 72: vkafk K-Kfa-CNGT viehp SUI1_ORYSA : 66- 73: ilkdl K-Kef-CCNG tvvqd SUI1_ORYSA : 66- 74: ilkdl K-KefcCNGT vvqdp SUI1_YEAST : 59- 67: ilkvl K-KdfaCNGN ivkdp YCIH_ECOLI : 68- 76: laael KkKcg-CGGA vkdgv YCIH_ECOLI : 68- 76: laael K-KkcgCGGA vkdgv YCIH_ECOLI : 69- 76: aaelk K-Kcg-CGGA vkdgv YCIH_HAEIN : 66- 74: laael K-KrcgCGGA vkngi YCIH_SALTY : 68- 76: laael KkKcg-CGGA vkegi YCIH_SALTY : 68- 76: laael K-KkcgCGGA vkegi YCIH_SALTY : 69- 76: aaelk K-Kcg-CGGA vkegi YRP1_METVA : 59- 67: kdlak KlKdi-CACG gtvkk H 8: 17.9161 9( 9) K-K-x(3,4)-C-x(1,2)-G-[AGNT] Occurences: 9(9) SUI1_ANOGA : 61- 69: ivrac KKefa-Cn-GT viehp SUI1_ARATH : 64- 72: ilkxl KKefc-Cn-GT vvqds SUI1_HUMAN : 64- 72: lvkaf KKkfa-Cn-GT viehp SUI1_ORYSA : 66- 74: ilkdl KKefc-Cn-GT vvqdp SUI1_YEAST : 59- 67: ilkvl KKdfa-Cn-GN ivkdp YCIH_ECOLI : 68- 76: laael KKkcg-Cg-GA vkdgv YCIH_HAEIN : 66- 74: laael KKrcg-Cg-GA vkngi YCIH_SALTY : 68- 76: laael KKkcg-Cg-GA vkegi YRP1_METVA : 58- 68: vkdla KKlkdiCacGG tvkkd I 9: 17.7737 9( 9) R-[DNR]-x(2)-K-x(0,1)-L-x-[ET] Occurences: 9(9) SUI1_ANOGA : 35- 43: iriqq RNgrKtLtT vqgls SUI1_ARATH : 38- 46: irxqq RNgrKsLtT vqxlk SUI1_HUMAN : 38- 46: iriqq RNgrKtLtT vqgia SUI1_ORYSA : 40- 48: vriqq RNgrKsLtT vqglk SUI1_YEAST : 33- 41: iriqq RNgrKtLtT vqgvp YCIH_ECOLI : 89- 97: iqgdk RDllKsLlE akgmk YCIH_HAEIN : 87- 95: iqgek RDllKqLlE qkgfk YCIH_SALTY : 89- 97: iqgdk RDliKsLlE akgmk YRP1_METVA : 34- 41: vyvtk RRfgK-LmT vvdgf J 10: 15.2832 9( 9) C-[GN]-G-x(1,2)-V Occurences: 9(9) SUI1_ANOGA : 66- 70: kkefa CNGt-V iehpe SUI1_ARATH : 69- 73: kkefc CNGt-V vqdse SUI1_ARATH : 69- 74: kkefc CNGtvV qdsel SUI1_HUMAN : 69- 73: kkkfa CNGt-V iehpe SUI1_ORYSA : 71- 75: kkefc CNGt-V vqdpe SUI1_ORYSA : 71- 76: kkefc CNGtvV qdpel SUI1_YEAST : 64- 69: kkdfa CNGniV kdpem YCIH_ECOLI : 73- 77: kkkcg CGGa-V kdgvi YCIH_HAEIN : 71- 75: kkrcg CGGa-V kngii YCIH_SALTY : 73- 77: kkkcg CGGa-V kegii YRP1_METVA : 66- 70: kdica CGGt-V kkdsi K 11: 15.1351 12( 9) Q-x-[DNS]-x-R-K Occurences: 12(9) SUI1_ANOGA : 34- 39: hiriq QrNgRK tlttv SUI1_ARATH : 37- 42: hirxq QrNgRK slttv SUI1_ARATH : 86- 91: qviql QgDqRK nvstf SUI1_HUMAN : 37- 42: hiriq QrNgRK tlttv SUI1_HUMAN : 86- 91: eviql QgDqRK nicqf SUI1_ORYSA : 39- 44: hvriq QrNgRK slttv SUI1_ORYSA : 88- 93: qviql QgDqRK nvsnf SUI1_YEAST : 32- 37: hiriq QrNgRK tlttv YCIH_ECOLI : 38- 43: vriqr QtSgRK gkgvc YCIH_HAEIN : 36- 41: vriqk QtSgRK gagvs YCIH_SALTY : 38- 43: vriqr QtSgRK gkgvc YRP1_METVA : 78- 83: dsiel QgDhRK kaeei L 12: 14.6852 10( 9) R-x(2,3)-K-x(0,1)-L-x-[ET] Occurences: 10(9) SUI1_ANOGA : 35- 43: iriqq RngrKtLtT vqgls SUI1_ARATH : 38- 46: irxqq RngrKsLtT vqxlk SUI1_HUMAN : 38- 46: iriqq RngrKtLtT vqgia SUI1_ORYSA : 40- 48: vriqq RngrKsLtT vqglk SUI1_YEAST : 33- 41: iriqq RngrKtLtT vqgvp YCIH_ECOLI : 89- 97: iqgdk RdllKsLlE akgmk YCIH_HAEIN : 87- 95: iqgek RdllKqLlE qkgfk YCIH_SALTY : 89- 97: iqgdk RdliKsLlE akgmk YRP1_METVA : 34- 41: vyvtk RrfgK-LmT vvdgf YRP1_METVA : 35- 41: yvtkr Rfg-K-LmT vvdgf M 13: 13.3949 11( 9) G-D-x(1,3)-R-x(4)-[ENQST] Occurences: 11(9) SUI1_ANOGA : 84- 92: vlqlq GDq--RenicQ wltks SUI1_ARATH : 87- 95: viqlq GDq--RknvsT flvqa SUI1_HUMAN : 87- 95: viqlq GDq--RknicQ flvei SUI1_ORYSA : 89- 97: viqlq GDq--RknvsN flvqa SUI1_YEAST : 82- 90: iiqlq GDq--RakvcE fmisq YCIH_ECOLI : 29- 39: pvrpk GDgvvRiqrqT sgrkg YCIH_ECOLI : 86- 94: vieiq GDk--RdllkS lleak YCIH_HAEIN : 27- 37: vvrpk GDgvvRiqkqT sgrkg YCIH_SALTY : 29- 39: pvrpk GDgivRiqrqT sgrkg YCIH_SALTY : 86- 94: iieiq GDk--RdlikS lleak YRP1_METVA : 79- 87: sielq GDh--RkkaeE ilikm N 14: 12.0102 10( 9) K-x(1,2)-L-x-K Occurences: 10(9) SUI1_ANOGA : 96- 101: cqwlt KsgLaK peqlk SUI1_ARATH : 61- 65: ytkil Kx-LkK efccn SUI1_HUMAN : 56- 61: addyd KkkLvK afkkk SUI1_HUMAN : 57- 61: ddydk Kk-LvK afkkk SUI1_ORYSA : 63- 67: ynkil Kd-LkK efccn SUI1_YEAST : 56- 60: lkril Kv-LkK dfacn YCIH_ECOLI : 88- 93: eiqgd KrdLlK sllea YCIH_HAEIN : 86- 91: eiqge KrdLlK qlleq YCIH_SALTY : 88- 93: eiqgd KrdLiK sllea YRP1_METVA : 54- 58: dlidv Kd-LaK klkdi O 15: 11.5102 11( 9) G-x(1,2)-K-x(3,4)-V Occurences: 11(9) SUI1_ANOGA : 37- 44: iqqrn Gr-KtlttV qglsa SUI1_ARATH : 40- 47: xqqrn Gr-KslttV qxlkk SUI1_HUMAN : 40- 47: iqqrn Gr-KtlttV qgiad SUI1_ORYSA : 28- 35: sgaaa Gs-KdyvhV riqqr SUI1_ORYSA : 42- 49: iqqrn Gr-KslttV qglkk SUI1_YEAST : 35- 42: iqqrn Gr-KtlttV qgvpe YCIH_ECOLI : 41- 47: qrqts Gr-Kgkg-V clitg YCIH_HAEIN : 39- 45: qkqts Gr-Kgag-V svitg YCIH_SALTY : 41- 47: qrqts Gr-Kgkg-V clitg YRP1_METVA : 9- 16: icpic GlpKdlc-V ceeia YRP1_METVA : 93- 101: ilikm GfsKdmidV r P 16: 11.5102 12( 9) G-x(0,2)-R-K Occurences: 12(9) SUI1_ANOGA : 37- 39: iqqrn G--RK tlttv SUI1_ARATH : 40- 42: xqqrn G--RK slttv SUI1_ARATH : 87- 91: viqlq GdqRK nvstf SUI1_HUMAN : 40- 42: iqqrn G--RK tlttv SUI1_HUMAN : 87- 91: viqlq GdqRK nicqf SUI1_ORYSA : 42- 44: iqqrn G--RK slttv SUI1_ORYSA : 89- 93: viqlq GdqRK nvsnf SUI1_YEAST : 35- 37: iqqrn G--RK tlttv YCIH_ECOLI : 41- 43: qrqts G--RK gkgvc YCIH_HAEIN : 39- 41: qkqts G--RK gagvs YCIH_SALTY : 41- 43: qrqts G--RK gkgvc YRP1_METVA : 79- 83: sielq GdhRK kaeei Q 17: 11.5102 9( 9) C-x(0,1)-G-x(1,2)-V Occurences: 9(9) SUI1_ANOGA : 66- 70: kkefa CnGt-V iehpe SUI1_ARATH : 69- 73: kkefc CnGt-V vqdse SUI1_ARATH : 69- 74: kkefc CnGtvV qdsel SUI1_HUMAN : 69- 73: kkkfa CnGt-V iehpe SUI1_ORYSA : 71- 75: kkefc CnGt-V vqdpe SUI1_ORYSA : 71- 76: kkefc CnGtvV qdpel SUI1_YEAST : 64- 69: kkdfa CnGniV kdpem YCIH_ECOLI : 73- 77: kkkcg CgGa-V kdgvi YCIH_ECOLI : 73- 77: kkkcg C-GgaV kdgvi YCIH_HAEIN : 71- 75: kkrcg CgGa-V kngii YCIH_HAEIN : 71- 75: kkrcg C-GgaV kngii YCIH_SALTY : 73- 77: kkkcg CgGa-V kegii YCIH_SALTY : 73- 77: kkkcg C-GgaV kegii YRP1_METVA : 66- 70: kdica CgGt-V kkdsi YRP1_METVA : 66- 70: kdica C-GgtV kkdsi R 18: 11.5102 15( 9) C-x(1,2)-G-x(1,2)-V Occurences: 15(9) SUI1_ANOGA : 66- 70: kkefa Cn-Gt-V iehpe SUI1_ARATH : 68- 73: lkkef CcnGt-V vqdse SUI1_ARATH : 68- 74: lkkef CcnGtvV qdsel SUI1_ARATH : 69- 73: kkefc Cn-Gt-V vqdse SUI1_ARATH : 69- 74: kkefc Cn-GtvV qdsel SUI1_HUMAN : 69- 73: kkkfa Cn-Gt-V iehpe SUI1_ORYSA : 70- 75: lkkef CcnGt-V vqdpe SUI1_ORYSA : 70- 76: lkkef CcnGtvV qdpel SUI1_ORYSA : 71- 75: kkefc Cn-Gt-V vqdpe SUI1_ORYSA : 71- 76: kkefc Cn-GtvV qdpel SUI1_YEAST : 64- 69: kkdfa Cn-GniV kdpem YCIH_ECOLI : 71- 77: elkkk CgcGgaV kdgvi YCIH_ECOLI : 73- 77: kkkcg Cg-Ga-V kdgvi YCIH_HAEIN : 69- 75: elkkr CgcGgaV kngii YCIH_HAEIN : 71- 75: kkrcg Cg-Ga-V kngii YCIH_SALTY : 71- 77: elkkk CgcGgaV kegii YCIH_SALTY : 73- 77: kkkcg Cg-Ga-V kegii YRP1_METVA : 64- 70: klkdi CacGgtV kkdsi YRP1_METVA : 66- 70: kdica Cg-Gt-V kkdsi S 19: 11.5102 11( 9) L-x(3,5)-L-K Occurences: 11(9) SUI1_ANOGA : 47- 54: ttvqg LsaeydLK kivra SUI1_ANOGA : 99- 106: ltksg LakpeqLK vhgf SUI1_ARATH : 44- 51: ngrks LttvqxLK keysy SUI1_HUMAN : 102- 109: lveig LakddqLK vhgf SUI1_ORYSA : 46- 53: ngrks LttvqgLK kefsy SUI1_YEAST : 51- 56: peeyd Lkri--LK vlkkd YCIH_ECOLI : 63- 68: aeltk Laae--LK kkcgc YCIH_HAEIN : 53- 59: itgld Lsdee-LK klaae YCIH_HAEIN : 61- 66: eelkk Laae--LK krcgc YCIH_SALTY : 63- 68: aeltk Laae--LK kkcgc YRP1_METVA : 56- 61: idvkd Lakk--LK dicac T 20: 11.5102 11( 9) R-x(2,3)-K-x(0,1)-L Occurences: 11(9) SUI1_ANOGA : 35- 41: iriqq RngrKtL ttvqg SUI1_ARATH : 38- 44: irxqq RngrKsL ttvqx SUI1_HUMAN : 38- 44: iriqq RngrKtL ttvqg SUI1_ORYSA : 40- 46: vriqq RngrKsL ttvqg SUI1_YEAST : 33- 39: iriqq RngrKtL ttvqg SUI1_YEAST : 53- 58: eydlk Ril-KvL kkdfa YCIH_ECOLI : 89- 95: iqgdk RdllKsL leakg YCIH_HAEIN : 87- 93: iqgek RdllKqL leqkg YCIH_SALTY : 89- 95: iqgdk RdliKsL leakg YRP1_METVA : 34- 39: vyvtk RrfgK-L mtvvd YRP1_METVA : 35- 39: yvtkr Rfg-K-L mtvvd Number of patterns evaluated by Pratt:394 Total running time: 1 seconds