------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file SSI PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SSI.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SSI1_STRCI 110 SSI2_STRLO 144 SSI2_STRRO 113 SSI3_STRCO 107 SSI4_STRLA 116 SSI8_STRVG 111 SSI_STRAN 109 SSI_STRAO 144 SSI_STRGI 107 SSI_STRLI 144 Pratt run started at Thu Feb 6 21:15:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 53.7107 10( 10) A-x-T-x(2)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 2: 53.7107 10( 10) R-x(2)-T-x(2)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 3: 53.2107 10( 10) R-x(1,2)-T-x(2)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 4: 49.0406 11( 10) T-x(2,3)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 5: 49.0406 10( 10) T-x(1,2)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 6: 48.5406 16( 10) T-x(0,2)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 7: 48.5406 10( 10) V-x(1,3)-C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 8: 45.3706 10( 10) C-x-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 9: 44.8706 10( 10) C-x(0,1)-P-x(2,3)-G-x-H-P-x(4)-A-C-A-x-L-x(4)-G-x(4)-L 10: 32.3604 10( 10) R-x(2)-T-x(2)-C-x-P-x(2,3)-G-x-H-P-x(3,4)-A 11: 32.3604 10( 10) Y-A-P-S-A-x-V-x(3,5)-G-x(4)-A 12: 31.8604 10( 10) P-x(4)-A-C-A-x-L-x(4)-G-x(0,2)-D-x(2,3)-L 13: 31.8604 10( 10) H-x(5)-A-C-A-x-L-x(4)-G-x(0,2)-D-x(2,3)-L 14: 28.1904 10( 10) T-x(2)-C-x-P-x(2,3)-G-x-H-P-x(3,4)-A 15: 28.1904 10( 10) A-P-S-A-x-V-x(3,5)-G-x(4)-A 16: 27.6904 10( 10) A-C-A-x-L-x(4)-G-x(0,2)-D-x(2,3)-L 17: 27.1904 22( 10) V-x(0,2)-T-x(2,4)-G-V-W-x-G-x-R 18: 27.1904 16( 10) A-x(1,3)-P-x(1,3)-R-A-x-T-x(2)-C-x-P 19: 24.5203 10( 10) V-x(5)-G-V-W-x-G-x(0,1)-R 20: 24.0203 16( 10) V-x(4,5)-G-V-W-x-G-x(0,1)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 82.4627 10( 10) R-A-[TV]-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-x(3,4)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] B 2: 82.0781 10( 10) A-x-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] C 3: 82.0781 10( 10) R-x(2)-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] D 4: 81.5781 10( 10) R-x(1,2)-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] E 5: 80.4111 10( 10) V-x-[LV]-[ST]-[AV]-x-G-V-W-[DEQ]-G-x(0,1)-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F F 6: 76.8694 16( 10) A-x(1,3)-P-x(1,3)-R-A-[TV]-T-[LV]-x-C-[AL]-P-x-[AGPS]-x-[DG]-x(2)-[AP]-[ADP]-x(3)-[AC]-[AC]-A-x(4)-[AGTV]-x-[DG]-[ADP]-x-[ADNS]-x-[LP]-x(4)-[ADGNS]-[PTV] G 7: 74.2243 11( 10) T-x(2,3)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] H 8: 74.2243 10( 10) T-x(1,2)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] I 9: 73.7243 16( 10) T-x(0,2)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] J 10: 73.7243 10( 10) V-x(1,3)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] K 11: 73.5362 22( 10) V-x(0,2)-T-x(2,4)-G-V-W-[DEQ]-G-x-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F L 12: 70.9508 10( 10) T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-x(3,4)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] M 13: 70.3662 16( 10) V-x(4,5)-G-V-W-[DEQ]-G-x(0,1)-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F N 14: 67.3842 10( 10) C-x-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] O 15: 66.8842 10( 10) C-x(0,1)-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] P 16: 47.7413 10( 10) H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L Q 17: 46.2807 10( 10) Y-A-P-S-A-[LMV]-V-x(3,5)-G-x-[DGS]-x-[ADS]-A-[APT]-[AT] R 18: 43.5713 10( 10) P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L S 19: 42.1107 10( 10) A-P-S-A-[LMV]-V-x(3,5)-G-x-[DGS]-x-[ADS]-A-[APT]-[AT] T 20: 32.9439 10( 10) A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 82.4627 10( 10) R-A-[TV]-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-x(3,4)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 24- 62: dapaq RAVTLrCLPvg-GDHPapekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 60- 99: aaspl RAVTLnCAPtasGTHPapalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 29- 68: atspl RAVTLtCAPkatGTHPaadaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 23- 62: taapl RAVTLtCAPtasGTHPaadaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 32- 71: tatpe RAVTLtCAPtssGTHPaasaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 25- 64: aptvv RATTVsCAPgarGTHPdpkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 25- 64: tvnpe RAVTLnCAPtasGTHPaalqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 60- 99: taape RAVTLtCAPgpsGTHPaagsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 23- 62: tvtpe RAVTLtCAPgpsGTHPaadsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 60- 99: taapl RAVTLtCAPtasGTHPaaaaACAELraAhGDpSaLaaedS vmctr B 2: 82.0781 10( 10) A-x-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 25- 62: apaqr AvTLrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 61- 99: asplr AvTLnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 30- 68: tsplr AvTLtCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 24- 62: aaplr AvTLtCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 33- 71: atper AvTLtCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 26- 64: ptvvr AtTVsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 26- 64: vnper AvTLnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 61- 99: aaper AvTLtCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 24- 62: vtper AvTLtCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 61- 99: aaplr AvTLtCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr C 3: 82.0781 10( 10) R-x(2)-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 24- 62: dapaq RavTLrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 60- 99: aaspl RavTLnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 29- 68: atspl RavTLtCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 23- 62: taapl RavTLtCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 32- 71: tatpe RavTLtCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 25- 64: aptvv RatTVsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 25- 64: tvnpe RavTLnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 60- 99: taape RavTLtCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 23- 62: tvtpe RavTLtCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 60- 99: taapl RavTLtCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr D 4: 81.5781 10( 10) R-x(1,2)-T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 24- 62: dapaq RavTLrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 60- 99: aaspl RavTLnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 29- 68: atspl RavTLtCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 23- 62: taapl RavTLtCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 32- 71: tatpe RavTLtCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 25- 64: aptvv RatTVsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 25- 64: tvnpe RavTLnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 60- 99: taape RavTLtCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 23- 62: tvtpe RavTLtCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 60- 99: taapl RavTLtCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr E 5: 80.4111 10( 10) V-x-[LV]-[ST]-[AV]-x-G-V-W-[DEQ]-G-x(0,1)-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F Occurences: 10(10) SSI1_STRCI : 75- 110: reyrp VtVSVqGVWDGrRIDHAqTFSNSCelEkqtaSvyAF SSI2_STRLO : 109- 144: klydp VvVTVdGVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRRO : 78- 113: reyap VvVTVdGVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 72- 107: reyap VvVTVdGVWQGrRLSYErTFANECvkNagsaSvfTF SSI4_STRLA : 81- 116: klydp VvVTAqGVWQGqRVSYErTFGNSCerDavggSlfAF SSI8_STRVG : 76- 111: mhyap VtVSAvGVWEGrRVAWDhTFANSCtmAatldGnaVF SSI_STRAN : 74- 109: kqfdp VvVTVdGVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAO : 109- 144: mvydp VlLTVdGVWQGkRVSYErVFSNECemNahgsSvfAF SSI_STRGI : 72- 107: miydp VlLTVdGVWQGeRVSYErVFSNECemNahgsSvlAF SSI_STRLI : 109- 144: reyap VvVTVdGVWQGrRLSYErTFANECvkNagsaSvfTF F 6: 76.8694 16( 10) A-x(1,3)-P-x(1,3)-R-A-[TV]-T-[LV]-x-C-[AL]-P-x-[AGPS]-x-[DG]-x(2)-[AP]-[ADP]-x(3)-[AC]-[AC]-A-x(4)-[AGTV]-x-[DG]-[ADP]-x-[ADNS]-x-[LP]-x(4)-[ADGNS]-[PTV] Occurences: 16(10) SSI1_STRCI : 18- 64: tqgas Ada-Paq-RAVTLrCLPvGgDhpAPekaCAAlreaGgDPaAlPryveDT grvct SSI2_STRLO : 54- 100: hgtsa AaasPl--RAVTLnCAPtAsGthPApalACAdlrgVgGDiDaLkardGV icnkl SSI2_STRLO : 55- 100: gtsaa Aas-Pl--RAVTLnCAPtAsGthPApalACAdlrgVgGDiDaLkardGV icnkl SSI2_STRLO : 56- 100: tsaaa As--Pl--RAVTLnCAPtAsGthPApalACAdlrgVgGDiDaLkardGV icnkl SSI2_STRRO : 23- 69: qgesa AatsPl--RAVTLtCAPkAtGthPAadaACAelrrAgGDfDaLsaadGV mctre SSI2_STRRO : 24- 69: gesaa Ats-Pl--RAVTLtCAPkAtGthPAadaACAelrrAgGDfDaLsaadGV mctre SSI3_STRCO : 17- 63: hgesa AtaaPl--RAVTLtCAPtAsGthPAadaACAelraAhGDpSaLaaddAV mctre SSI3_STRCO : 19- 63: esaat Aa--Pl--RAVTLtCAPtAsGthPAadaACAelraAhGDpSaLaaddAV mctre SSI4_STRLA : 26- 72: hggaa AtatPe--RAVTLtCAPtSsGthPAasaACAelrgVgGDfAaLkardDV wcnkl SSI4_STRLA : 28- 72: gaaat At--Pe--RAVTLtCAPtSsGthPAasaACAelrgVgGDfAaLkardDV wcnkl SSI8_STRVG : 19- 65: qgddv Aa--PtvvRATTVsCAPgArGthPDpkaACAalksTgGAfDrLlsepNP dracp SSI_STRAN : 19- 65: hgnsa AtvnPe--RAVTLnCAPtAsGthPAalqACAelrgAgGDfDaLtvrgDV actkq SSI_STRAO : 56- 100: vsatt Aa--Pe--RAVTLtCAPgPsGthPAagsACAdlaaVgGDlNaLtrgeDV mcpmv SSI_STRGI : 17- 63: kgvsa AtvtPe--RAVTLtCAPgPsGthPAadsACAdlaaVgGDlDaLtrseGV mcpmi SSI_STRLI : 54- 100: hgesa AtaaPl--RAVTLtCAPtAsGthPAaaaACAelraAhGDpSaLaaedSV mctre SSI_STRLI : 56- 100: esaat Aa--Pl--RAVTLtCAPtAsGthPAaaaACAelraAhGDpSaLaaedSV mctre G 7: 74.2243 11( 10) T-x(2,3)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 11(10) SSI1_STRCI : 27- 62: aqrav Tlr-CLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 63- 99: plrav Tln-CAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 32- 68: plrav Tlt-CAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 26- 62: plrav Tlt-CAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 35- 71: perav Tlt-CAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 27- 64: tvvra TtvsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI8_STRVG : 28- 64: vvrat Tvs-CAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 28- 64: perav Tln-CAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 63- 99: perav Tlt-CAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 26- 62: perav Tlt-CAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 63- 99: plrav Tlt-CAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr H 8: 74.2243 10( 10) T-x(1,2)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 27- 62: aqrav TlrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 63- 99: plrav TlnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 32- 68: plrav TltCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 26- 62: plrav TltCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 35- 71: perav TltCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 28- 64: vvrat TvsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 28- 64: perav TlnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 63- 99: perav TltCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 26- 62: perav TltCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 63- 99: plrav TltCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr I 9: 73.7243 16( 10) T-x(0,2)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 16(10) SSI1_STRCI : 27- 62: aqrav TlrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 63- 99: plrav TlnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 32- 68: plrav TltCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI2_STRRO : 34- 68: ravtl T--CAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 26- 62: plrav TltCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI3_STRCO : 28- 62: ravtl T--CAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 35- 71: perav TltCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI4_STRLA : 37- 71: ravtl T--CAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 28- 64: vvrat TvsCAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 28- 64: perav TlnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 63- 99: perav TltCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRAO : 65- 99: ravtl T--CAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 26- 62: perav TltCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRGI : 28- 62: ravtl T--CAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 63- 99: plrav TltCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr SSI_STRLI : 65- 99: ravtl T--CAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr J 10: 73.7243 10( 10) V-x(1,3)-C-[AL]-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 26- 62: paqra VtlrCLPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 62- 99: splra VtlnCAPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 31- 68: splra VtltCAPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 25- 62: aplra VtltCAPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 34- 71: tpera VtltCAPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 29- 64: vratt Vs--CAPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 27- 64: npera VtlnCAPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 62- 99: apera VtltCAPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 25- 62: tpera VtltCAPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 62- 99: aplra VtltCAPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr K 11: 73.5362 22( 10) V-x(0,2)-T-x(2,4)-G-V-W-[DEQ]-G-x-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F Occurences: 22(10) SSI1_STRCI : 75- 110: reyrp V--TvsvqGVWDGrRIDHAqTFSNSCelEkqtaSvyAF SSI2_STRLO : 109- 144: klydp VvvTvd--GVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRLO : 110- 144: lydpv Vv-Tvd--GVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRLO : 111- 144: ydpvv V--Tvd--GVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRRO : 78- 113: reyap VvvTvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI2_STRRO : 79- 113: eyapv Vv-Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI2_STRRO : 80- 113: yapvv V--Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 72- 107: reyap VvvTvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 73- 107: eyapv Vv-Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 74- 107: yapvv V--Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI4_STRLA : 81- 116: klydp VvvTaq--GVWQGqRVSYErTFGNSCerDavggSlfAF SSI4_STRLA : 82- 116: lydpv Vv-Taq--GVWQGqRVSYErTFGNSCerDavggSlfAF SSI4_STRLA : 83- 116: ydpvv V--Taq--GVWQGqRVSYErTFGNSCerDavggSlfAF SSI8_STRVG : 76- 111: mhyap V--TvsavGVWEGrRVAWDhTFANSCtmAatldGnaVF SSI_STRAN : 74- 109: kqfdp VvvTvd--GVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAN : 75- 109: qfdpv Vv-Tvd--GVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAN : 76- 109: fdpvv V--Tvd--GVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAO : 109- 144: mvydp VllTvd--GVWQGkRVSYErVFSNECemNahgsSvfAF SSI_STRGI : 72- 107: miydp VllTvd--GVWQGeRVSYErVFSNECemNahgsSvlAF SSI_STRLI : 109- 144: reyap VvvTvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI_STRLI : 110- 144: eyapv Vv-Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF SSI_STRLI : 111- 144: yapvv V--Tvd--GVWQGrRLSYErTFANECvkNagsaSvfTF L 12: 70.9508 10( 10) T-[LV]-x-C-[AL]-P-x(2,3)-G-[DT]-H-P-x(3,4)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 27- 62: aqrav TLrCLPvg-GDHPapekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 63- 99: plrav TLnCAPtasGTHPapalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 32- 68: plrav TLtCAPkatGTHPaadaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 26- 62: plrav TLtCAPtasGTHPaadaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 35- 71: perav TLtCAPtssGTHPaasaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 28- 64: vvrat TVsCAPgarGTHPdpkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 28- 64: perav TLnCAPtasGTHPaalqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 63- 99: perav TLtCAPgpsGTHPaagsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 26- 62: perav TLtCAPgpsGTHPaadsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 63- 99: plrav TLtCAPtasGTHPaaaaACAELraAhGDpSaLaaedS vmctr M 13: 70.3662 16( 10) V-x(4,5)-G-V-W-[DEQ]-G-x(0,1)-R-[ILV]-[ADS]-[HWY]-[ADE]-x-[TV]-F-[AGS]-N-[ES]-C-x(2)-[ADEN]-x(4)-[GST]-x(2)-[ATV]-F Occurences: 16(10) SSI1_STRCI : 75- 110: reyrp VtvsvqGVWDGrRIDHAqTFSNSCelEkqtaSvyAF SSI2_STRLO : 109- 144: klydp VvvtvdGVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRLO : 110- 144: lydpv Vvtvd-GVWQGkRVSYErTFGNECvkNsygtSlfAF SSI2_STRRO : 78- 113: reyap VvvtvdGVWQGrRLSYErTFANECvkNagsaSvfTF SSI2_STRRO : 79- 113: eyapv Vvtvd-GVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 72- 107: reyap VvvtvdGVWQGrRLSYErTFANECvkNagsaSvfTF SSI3_STRCO : 73- 107: eyapv Vvtvd-GVWQGrRLSYErTFANECvkNagsaSvfTF SSI4_STRLA : 81- 116: klydp VvvtaqGVWQGqRVSYErTFGNSCerDavggSlfAF SSI4_STRLA : 82- 116: lydpv Vvtaq-GVWQGqRVSYErTFGNSCerDavggSlfAF SSI8_STRVG : 76- 111: mhyap VtvsavGVWEGrRVAWDhTFANSCtmAatldGnaVF SSI_STRAN : 74- 109: kqfdp VvvtvdGVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAN : 75- 109: qfdpv Vvtvd-GVWQGkRVSYErTFANECvkNsygmTvfTF SSI_STRAO : 109- 144: mvydp VlltvdGVWQGkRVSYErVFSNECemNahgsSvfAF SSI_STRGI : 72- 107: miydp VlltvdGVWQGeRVSYErVFSNECemNahgsSvlAF SSI_STRLI : 109- 144: reyap VvvtvdGVWQGrRLSYErTFANECvkNagsaSvfTF SSI_STRLI : 110- 144: eyapv Vvtvd-GVWQGrRLSYErTFANECvkNagsaSvfTF N 14: 67.3842 10( 10) C-x-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 30- 62: avtlr ClPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 66- 99: avtln CaPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 35- 68: avtlt CaPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 29- 62: avtlt CaPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 38- 71: avtlt CaPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 31- 64: attvs CaPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 31- 64: avtln CaPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 66- 99: avtlt CaPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 29- 62: avtlt CaPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 66- 99: avtlt CaPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr O 15: 66.8842 10( 10) C-x(0,1)-P-x(2,3)-G-[DT]-H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-[AD]-x-[ADNS]-x-L-x(4)-[ADEGNS] Occurences: 10(10) SSI1_STRCI : 30- 62: avtlr ClPvg-GDHPAPekACAALreAgGDpAaLpryvE dtgrv SSI2_STRLO : 66- 99: avtln CaPtasGTHPAPalACADLrgVgGDiDaLkardG vicnk SSI2_STRRO : 35- 68: avtlt CaPkatGTHPAAdaACAELrrAgGDfDaLsaadG vmctr SSI3_STRCO : 29- 62: avtlt CaPtasGTHPAAdaACAELraAhGDpSaLaaddA vmctr SSI4_STRLA : 38- 71: avtlt CaPtssGTHPAAsaACAELrgVgGDfAaLkardD vwcnk SSI8_STRVG : 31- 64: attvs CaPgarGTHPDPkaACAALksTgGAfDrLlsepN pdrac SSI_STRAN : 31- 64: avtln CaPtasGTHPAAlqACAELrgAgGDfDaLtvrgD vactk SSI_STRAO : 66- 99: avtlt CaPgpsGTHPAAgsACADLaaVgGDlNaLtrgeD vmcpm SSI_STRGI : 29- 62: avtlt CaPgpsGTHPAAdsACADLaaVgGDlDaLtrseG vmcpm SSI_STRLI : 66- 99: avtlt CaPtasGTHPAAaaACAELraAhGDpSaLaaedS vmctr P 16: 47.7413 10( 10) H-P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L Occurences: 10(10) SSI1_STRCI : 37- 57: pvggd HPAPekACAALreAgG--DpaaL pryve SSI2_STRLO : 74- 94: tasgt HPAPalACADLrgVgG--DidaL kardg SSI2_STRRO : 43- 63: katgt HPAAdaACAELrrAgG--DfdaL saadg SSI3_STRCO : 37- 57: tasgt HPAAdaACAELraAhG--DpsaL aadda SSI4_STRLA : 46- 66: tssgt HPAAsaACAELrgVgG--DfaaL kardd SSI8_STRVG : 39- 60: gargt HPDPkaACAALksTgGafDrl-L sepnp SSI_STRAN : 39- 59: tasgt HPAAlqACAELrgAgG--DfdaL tvrgd SSI_STRAO : 74- 94: gpsgt HPAAgsACADLaaVgG--DlnaL trged SSI_STRGI : 37- 57: gpsgt HPAAdsACADLaaVgG--DldaL trseg SSI_STRLI : 74- 94: tasgt HPAAaaACAELraAhG--DpsaL aaeds Q 17: 46.2807 10( 10) Y-A-P-S-A-[LMV]-V-x(3,5)-G-x-[DGS]-x-[ADS]-A-[APT]-[AT] Occurences: 10(10) SSI1_STRCI : 3- 22: sl YAPSAVVisktqGaSaDAPA qravt SSI2_STRLO : 38- 55: apasl YAPSALVltv--GhGtSAAA asplr SSI2_STRRO : 7- 24: apasl YAPSALVlti--GqGeSAAA tsplr SSI3_STRCO : 1- 18: YAPSALVltv--GhGeSAAT aaplr SSI4_STRLA : 10- 27: apasl YAPSALVlti--GhGgAAAT atper SSI8_STRVG : 3- 22: sl YAPSAMVfsvaqGdDvAAPT vvrat SSI_STRAN : 3- 20: gl YAPSALVltm--GhGnSAAT vnper SSI_STRAO : 38- 55: apsal YAPSALVltv--GkGvSATT aaper SSI_STRGI : 1- 18: YAPSALVltv--GkGvSAAT vtper SSI_STRLI : 38- 55: apasl YAPSALVltv--GhGeSAAT aaplr R 18: 43.5713 10( 10) P-[AD]-[AP]-x(2)-A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L Occurences: 10(10) SSI1_STRCI : 38- 57: vggdh PAPekACAALreAgG--DpaaL pryve SSI2_STRLO : 75- 94: asgth PAPalACADLrgVgG--DidaL kardg SSI2_STRRO : 44- 63: atgth PAAdaACAELrrAgG--DfdaL saadg SSI3_STRCO : 38- 57: asgth PAAdaACAELraAhG--DpsaL aadda SSI4_STRLA : 47- 66: ssgth PAAsaACAELrgVgG--DfaaL kardd SSI8_STRVG : 40- 60: argth PDPkaACAALksTgGafDrl-L sepnp SSI_STRAN : 40- 59: asgth PAAlqACAELrgAgG--DfdaL tvrgd SSI_STRAO : 75- 94: psgth PAAgsACADLaaVgG--DlnaL trged SSI_STRGI : 38- 57: psgth PAAdsACADLaaVgG--DldaL trseg SSI_STRLI : 75- 94: asgth PAAaaACAELraAhG--DpsaL aaeds S 19: 42.1107 10( 10) A-P-S-A-[LMV]-V-x(3,5)-G-x-[DGS]-x-[ADS]-A-[APT]-[AT] Occurences: 10(10) SSI1_STRCI : 4- 22: sly APSAVVisktqGaSaDAPA qravt SSI2_STRLO : 39- 55: pasly APSALVltv--GhGtSAAA asplr SSI2_STRRO : 8- 24: pasly APSALVlti--GqGeSAAA tsplr SSI3_STRCO : 2- 18: y APSALVltv--GhGeSAAT aaplr SSI4_STRLA : 11- 27: pasly APSALVlti--GhGgAAAT atper SSI8_STRVG : 4- 22: sly APSAMVfsvaqGdDvAAPT vvrat SSI_STRAN : 4- 20: gly APSALVltm--GhGnSAAT vnper SSI_STRAO : 39- 55: psaly APSALVltv--GkGvSATT aaper SSI_STRGI : 2- 18: y APSALVltv--GkGvSAAT vtper SSI_STRLI : 39- 55: pasly APSALVltv--GhGeSAAT aaplr T 20: 32.9439 10( 10) A-C-A-[ADE]-L-x(2)-[ATV]-x-G-x(0,2)-D-x(2,3)-L Occurences: 10(10) SSI1_STRCI : 43- 57: papek ACAALreAgG--DpaaL pryve SSI2_STRLO : 80- 94: papal ACADLrgVgG--DidaL kardg SSI2_STRRO : 49- 63: paada ACAELrrAgG--DfdaL saadg SSI3_STRCO : 43- 57: paada ACAELraAhG--DpsaL aadda SSI4_STRLA : 52- 66: paasa ACAELrgVgG--DfaaL kardd SSI8_STRVG : 45- 60: pdpka ACAALksTgGafDrl-L sepnp SSI_STRAN : 45- 59: paalq ACAELrgAgG--DfdaL tvrgd SSI_STRAO : 80- 94: paags ACADLaaVgG--DlnaL trged SSI_STRGI : 43- 57: paads ACADLaaVgG--DldaL trseg SSI_STRLI : 80- 94: paaaa ACAELraAhG--DpsaL aaeds Number of patterns evaluated by Pratt:1749 Total running time: 1 seconds