------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 19 sequences from file SSB_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 19 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SSB_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RIM1_YEAST 135 SSB2_ECOLI 178 SSB7_ECOLI 174 SSBF_ECOLI 178 SSBP_ECOLI 174 SSBR_ECOLI 174 SSBR_XENLA 82 SSBS_XENLA 146 SSB_BACSU 172 SSB_BRUAB 168 SSB_ECOLI 177 SSB_HAEIN 168 SSB_HUMAN 148 SSB_MYCLE 140 SSB_PROMI 173 SSB_PSEAE 165 SSB_RAT 151 SSB_SALTY 90 SSB_SERMA 175 Pratt run started at Thu Feb 6 21:15:10 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 19( 19) G-x(2,3)-V-x(5)-A 2: 11.0102 23( 19) G-x(2,3)-V-x(3,5)-A 3: 11.0102 34( 19) A-x(0,2)-N-x(4,5)-S 4: 11.0102 49( 19) V-x(4,5)-L-x(3,5)-E 5: 10.5102 19( 19) P-x(0,2)-R-x(2,4)-G 6: 8.3401 32( 19) L-R 7: 8.3401 71( 19) V-x(3)-G 8: 8.3401 30( 19) E-x(4)-G 9: 8.3401 27( 19) A-T 10: 8.3401 30( 19) E-G 11: 8.3401 25( 19) R-x(2)-Q 12: 8.3401 45( 19) G-x(2)-G 13: 7.8401 44( 19) G-x(0,1)-L 14: 7.8401 27( 19) P-x(1,2)-R 15: 7.8401 48( 19) R-x(1,2)-G 16: 7.8401 25( 19) V-x(0,1)-F 17: 7.8401 35( 19) S-x(2,3)-R 18: 7.8401 38( 19) S-x(4,5)-G 19: 7.8401 35( 19) T-x(2,3)-R 20: 7.8401 43( 19) T-x(3,4)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.5263 19( 19) G-x(2,3)-V-x(5)-A-[ASTV]-[NST]-x(4)-[DNRS]-x-[ADENQS]-[GNST]-[EGS] B 2: 24.7392 19( 19) P-x(1,2)-R-x(3)-[AGNST]-x(3)-[NV]-x(2)-[FILV]-x(2)-[AE]-x-[NQST]-x(4)-[DNST]-x(2)-[GNSTV] C 3: 13.2346 21( 19) G-x(2,3)-V-x(3,5)-A-x-[GNST] D 4: 12.8253 24( 19) G-x-[GILV]-G-x-[DEGN] E 5: 12.4344 32( 19) A-x(0,2)-N-x(4,5)-S-x-[ADEGQST] F 6: 11.0102 49( 19) V-x(4,5)-L-x(3,5)-E G 7: 10.7213 32( 19) R-x(1,2)-G-[ADEGNQS]-[ADEGNQS] H 8: 10.5966 44( 19) V-x(2)-[FILV]-G I 9: 10.5102 19( 19) P-x(0,2)-R-x(2,4)-G J 10: 10.2227 25( 19) E-x(2)-[DEQRS]-x-G K 11: 10.2076 26( 19) E-G-x(3)-[AGSTV] L 12: 8.3401 32( 19) L-R M 13: 8.3401 27( 19) A-T N 14: 8.3401 25( 19) R-x(2)-Q O 15: 7.8401 19( 19) G-x(2,3)-V P 16: 7.8401 44( 19) G-x(0,1)-L Q 17: 7.8401 25( 19) V-x(0,1)-F R 18: 7.8401 35( 19) S-x(2,3)-R S 19: 7.8401 38( 19) S-x(4,5)-G T 20: 7.8401 35( 19) T-x(2,3)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 25.5263 19( 19) G-x(2,3)-V-x(5)-A-[ASTV]-[NST]-x(4)-[DNRS]-x-[ADENQS]-[GNST]-[EGS] Occurences: 19(19) RIM1_YEAST : 81- 101: eyvrk Gal-VyveadAANyvfeRdDGS kgttl SSB2_ECOLI : 26- 46: ryipn Gga-VanlqvATSetwrDkQTG kmreq SSB7_ECOLI : 26- 46: ryipn Gga-VanlqvATSeswrDkQTG eireq SSBF_ECOLI : 26- 46: ryipn Gga-VanlqvATSeswrDkQTG emreq SSBP_ECOLI : 26- 46: ryipn Gga-VanlqvATSeswrDkQTG emreq SSBR_ECOLI : 26- 46: ryipn Gga-VanlqvATSeswrDkQTG emreq SSBR_XENLA : 33- 54: mrqae GknpVtifslATNelwrSgENE vfqpa SSBS_XENLA : 48- 69: mrqae GknpVtifslATNelwrSgESE tfhta SSB_BACSU : 23- 43: rytpn Gaa-VatftlAVNrtftNqSGE readf SSB_BRUAB : 26- 46: rrlns Gdm-VanlriATSeswrDrQTG erkdr SSB_ECOLI : 26- 46: rympn Gga-VanitlATSeswrDkATG emkeq SSB_HAEIN : 25- 45: rtmpn Gda-VanisvATSeswnDrNTG errev SSB_HUMAN : 50- 71: lrqve GknpVtifslATNemwrSgDSE vyqlg SSB_MYCLE : 25- 45: rftss Gaa-VvnftvASTpriyDrQSG ewkdg SSB_PROMI : 26- 46: rymps Gga-VanltlATSeswrDkQTG emkek SSB_PSEAE : 26- 46: rympn Gna-VtnitlATSeswkDkQTG qqqer SSB_RAT : 50- 71: mrqve GknpVtifslATNemwrSgDNE ayqmg SSB_SALTY : 26- 46: rymps Gga-VanltlATSeswrDkQTG emkeq SSB_SERMA : 26- 46: rympn Gga-VanitlATSeswrDkATG eqkek B 2: 24.7392 19( 19) P-x(1,2)-R-x(3)-[AGNST]-x(3)-[NV]-x(2)-[FILV]-x(2)-[AE]-x-[NQST]-x(4)-[DNST]-x(2)-[GNSTV] Occurences: 19(19) RIM1_YEAST : 52- 78: siasq Pr-RdgqTnwyNitVfnEpQinflTeyV rkgal SSB2_ECOLI : 18- 45: rlgkd PevRyipNggaVanLqvAtSetwrDkqT gkmre SSB7_ECOLI : 18- 45: rlgkd PevRyipNggaVanLqvAtSeswrDkqT geire SSBF_ECOLI : 18- 45: rlgkd PevRyipNggaVanLqvAtSeswrDkqT gemre SSBP_ECOLI : 18- 45: rlgnd PevRyipNggaVanLqvAtSeswrDkqT gemre SSBR_ECOLI : 18- 45: rlgnd PevRyipNggaVanLqvAtSeswrDkqT gemre SSBR_XENLA : 26- 53: rvgqd PvmRqaeGknpVtiFslAtNelwrSgeN evfqp SSBS_XENLA : 41- 68: rvgqd PvmRqaeGknpVtiFslAtNelwrSgeS etfht SSB_BACSU : 15- 42: rltkd PelRytpNgaaVatFtlAvNrtftNqsG eread SSB_BRUAB : 18- 45: nlgad PeiRrlnSgdmVanLriAtSeswrDrqT gerkd SSB_ECOLI : 18- 45: nlgqd PevRympNggaVanItlAtSeswrDkaT gemke SSB_HAEIN : 17- 44: hlgnd PeiRtmpNgdaVanIsvAtSeswnDrnT gerre SSB_HUMAN : 43- 70: rvgqd PvlRqveGknpVtiFslAtNemwrSgdS evyql SSB_MYCLE : 17- 44: nltad PelRftsSgaaVvnFtvAsTpriyDrqS gewkd SSB_PROMI : 18- 45: nlgqd PeiRympSggaVanLtlAtSeswrDkqT gemke SSB_PSEAE : 18- 45: nvggd PetRympNgnaVtnItlAtSeswkDkqT gqqqe SSB_RAT : 43- 70: rvgqd PvmRqveGknpVtiFslAtNemwrSgdN eayqm SSB_SALTY : 18- 45: nlgqd PevRympSggaVanLtlAtSeswrDkqT gemke SSB_SERMA : 18- 45: nlgqd PevRympNggaVanItlAtSeswrDkaT geqke C 3: 13.2346 21( 19) G-x(2,3)-V-x(3,5)-A-x-[GNST] Occurences: 21(19) RIM1_YEAST : 81- 92: eyvrk Gal-VyveadAaN yvfer SSB2_ECOLI : 26- 37: ryipn Gga-VanlqvAtS etwrd SSB7_ECOLI : 26- 37: ryipn Gga-VanlqvAtS eswrd SSBF_ECOLI : 26- 37: ryipn Gga-VanlqvAtS eswrd SSBP_ECOLI : 26- 37: ryipn Gga-VanlqvAtS eswrd SSBR_ECOLI : 26- 37: ryipn Gga-VanlqvAtS eswrd SSBR_XENLA : 23- 33: llgrv GqdpVmrq--AeG knpvt SSBR_XENLA : 33- 45: mrqae GknpVtifslAtN elwrs SSBS_XENLA : 38- 48: llgrv GqdpVmrq--AeG knpvt SSBS_XENLA : 48- 60: mrqae GknpVtifslAtN elwrs SSB_BACSU : 23- 34: rytpn Gaa-VatftlAvN rtftn SSB_BRUAB : 26- 37: rrlns Gdm-VanlriAtS eswrd SSB_ECOLI : 26- 37: rympn Gga-VanitlAtS eswrd SSB_HAEIN : 25- 36: rtmpn Gda-VanisvAtS eswnd SSB_HUMAN : 50- 62: lrqve GknpVtifslAtN emwrs SSB_MYCLE : 25- 36: rftss GaavVnftv-AsT priyd SSB_MYCLE : 25- 36: rftss Gaa-VvnftvAsT priyd SSB_PROMI : 26- 37: rymps Gga-VanltlAtS eswrd SSB_PSEAE : 26- 37: rympn Gna-VtnitlAtS eswkd SSB_RAT : 50- 62: mrqve GknpVtifslAtN emwrs SSB_SALTY : 26- 37: rymps Gga-VanltlAtS eswrd SSB_SERMA : 26- 37: rympn Gga-VanitlAtS eswrd D 4: 12.8253 24( 19) G-x-[GILV]-G-x-[DEGN] Occurences: 24(19) RIM1_YEAST : 26- 31: kmsiv GrIGsE fteht SSB2_ECOLI : 12- 17: kvilv GrLGkD pevry SSB7_ECOLI : 12- 17: kvilv GrLGkD pevry SSBF_ECOLI : 12- 17: kvilv GrLGkD pevry SSBP_ECOLI : 12- 17: kvilv GrLGnD pevry SSBR_ECOLI : 12- 17: kvilv GrLGnD pevry SSBR_XENLA : 20- 25: kvqll GrVGqD pvmrq SSBS_XENLA : 35- 40: kvqll GrVGqD pvmrq SSB_BACSU : 112- 117: ngggs GsGGyN egnsg SSB_BRUAB : 12- 17: kvilv GnLGaD peirr SSB_ECOLI : 12- 17: kvilv GnLGqD pevry SSB_ECOLI : 124- 129: gapag GnIGgG qpqgg SSB_HAEIN : 11- 16: kviiv GhLGnD peirt SSB_HUMAN : 37- 42: rvhll GrVGqD pvlrq SSB_MYCLE : 124- 129: kasrs GgGGgG fgsgs SSB_MYCLE : 126- 131: srsgg GgGGfG sgsrq SSB_PROMI : 12- 17: kvili GnLGqD peiry SSB_PROMI : 114- 119: mqmlg GrGGqD napsq SSB_PROMI : 125- 130: napsq GqGGwG qpqqp SSB_PSEAE : 12- 17: kvilv GnVGgD petry SSB_RAT : 37- 42: rvqll GrVGqD pvmrq SSB_SALTY : 12- 17: kvilv GnLGqD pevry SSB_SERMA : 12- 17: kvilv GnLGqD pevry SSB_SERMA : 128- 133: gqsag GqGGwG qpqqp E 5: 12.4344 32( 19) A-x(0,2)-N-x(4,5)-S-x-[ADEGQST] Occurences: 32(19) RIM1_YEAST : 38- 49: tehts AnnNrylkySiA sqprr SSB2_ECOLI : 28- 39: ipngg AvaNlqvatSeT wrdkq SSB2_ECOLI : 30- 39: nggav A--NlqvatSeT wrdkq SSB7_ECOLI : 28- 39: ipngg AvaNlqvatSeS wrdkq SSB7_ECOLI : 30- 39: nggav A--NlqvatSeS wrdkq SSBF_ECOLI : 28- 39: ipngg AvaNlqvatSeS wrdkq SSBF_ECOLI : 30- 39: nggav A--NlqvatSeS wrdkq SSBP_ECOLI : 28- 39: ipngg AvaNlqvatSeS wrdkq SSBP_ECOLI : 30- 39: nggav A--NlqvatSeS wrdkq SSBR_ECOLI : 28- 39: ipngg AvaNlqvatSeS wrdkq SSBR_ECOLI : 30- 39: nggav A--NlqvatSeS wrdkq SSBR_XENLA : 43- 52: tifsl At-Nelwr-SgE nevfq SSBS_XENLA : 58- 67: tifsl At-Nelwr-SgE setfh SSB_BACSU : 62- 71: qaenv A--NflkkgSlA gvdgr SSB_BRUAB : 30- 39: sgdmv A--NlriatSeS wrdrq SSB_ECOLI : 28- 39: mpngg AvaNitlatSeS wrdka SSB_ECOLI : 30- 39: nggav A--NitlatSeS wrdka SSB_HAEIN : 27- 38: mpngd AvaNisvatSeS wndrn SSB_HAEIN : 29- 38: ngdav A--NisvatSeS wndrn SSB_HUMAN : 60- 69: tifsl At-Nemwr-SgD sevyq SSB_HUMAN : 134- 143: attii Ad-Niifl-SdQ tkeke SSB_MYCLE : 115- 125: lryat AkvNkasr-SgG ggggf SSB_PROMI : 28- 39: mpsgg AvaNltlatSeS wrdkq SSB_PROMI : 30- 39: sggav A--NltlatSeS wrdkq SSB_PSEAE : 28- 39: mpngn AvtNitlatSeS wkdkq SSB_RAT : 60- 69: tifsl At-Nemwr-SgD neayq SSB_RAT : 134- 143: attii Ad-Niifl-SdQ arekp SSB_SALTY : 28- 39: mpsgg AvaNltlatSeS wrdkq SSB_SALTY : 30- 39: sggav A--NltlatSeS wrdkq SSB_SERMA : 28- 39: mpngg AvaNitlatSeS wrdka SSB_SERMA : 30- 39: nggav A--NitlatSeS wrdka SSB_SERMA : 154- 164: qqsrp Aq-NsapatSnE ppmdf F 6: 11.0102 49( 19) V-x(4,5)-L-x(3,5)-E Occurences: 49(19) RIM1_YEAST : 78- 87: fltey Vrkga-Lvyv--E adaan SSB2_ECOLI : 8- 19: rgink VilvgrLgkdp-E vryip SSB2_ECOLI : 57- 69: tewhr VvlfgkLaevagE ylrkg SSB2_ECOLI : 58- 69: ewhrv Vlfgk-LaevagE ylrkg SSB2_ECOLI : 77- 89: rkgaq VyiegqLrtrswE dngit SSB7_ECOLI : 8- 19: rgink VilvgrLgkdp-E vryip SSB7_ECOLI : 57- 69: tewhr VvlfgkLaevagE ylrkg SSB7_ECOLI : 58- 69: ewhrv Vlfgk-LaevagE ylrkg SSB7_ECOLI : 77- 89: rkgaq VyiegqLrtrswE dngit SSBF_ECOLI : 8- 19: rgink VilvgrLgkdp-E vryip SSBF_ECOLI : 57- 69: tewhr VvlfgkLaevagE clrkg SSBF_ECOLI : 58- 69: ewhrv Vlfgk-LaevagE clrkg SSBF_ECOLI : 77- 89: rkgaq VyiegqLrtrswE dngit SSBP_ECOLI : 8- 19: rgink VilvgrLgndp-E vryip SSBP_ECOLI : 57- 69: tewhr VvlfgkLaevagE ylrkg SSBP_ECOLI : 58- 69: ewhrv Vlfgk-LaevagE ylrkg SSBR_ECOLI : 8- 19: rgink VilvgrLgndp-E vryip SSBR_ECOLI : 57- 69: tewhr VvlfgkLaevagE ylrkg SSBR_ECOLI : 58- 69: ewhrv Vlfgk-LaevagE ylrkg SSBR_XENLA : 37- 46: egknp Vtifs-Latn--E lwrsg SSBS_XENLA : 52- 61: egknp Vtifs-Latn--E lwrsg SSB_BACSU : 5- 16: mlnr VvlvgrLtkdp-E lrytp SSB_BACSU : 6- 16: mlnrv Vlvgr-Ltkdp-E lrytp SSB_BRUAB : 8- 19: gsvnk VilvgnLgadp-E irrln SSB_BRUAB : 58- 69: ewhsv VifnenLakva-E qylkk SSB_ECOLI : 8- 19: rgvnk VilvgnLgqdp-E vrymp SSB_ECOLI : 29- 38: pngga Vanit-Lats--E swrdk SSB_ECOLI : 57- 69: tewhr VvlfgkLaevasE ylrkg SSB_ECOLI : 58- 69: ewhrv Vlfgk-LaevasE ylrkg SSB_HAEIN : 7- 18: agink ViivghLgndp-E irtmp SSB_HUMAN : 39- 49: hllgr VgqdpvLrqv--E gknpv SSB_HUMAN : 54- 63: egknp Vtifs-Latn--E mwrsg SSB_MYCLE : 77- 89: trgar VivtgrLkqrsfE trege SSB_PROMI : 8- 19: rgvnk VilignLgqdp-E irymp SSB_PROMI : 29- 38: psgga Vanlt-Lats--E swrdk SSB_PROMI : 57- 69: tewhr VvifgkLaeiagE ylrkg SSB_PROMI : 58- 69: ewhrv Vifgk-LaeiagE ylrkg SSB_PSEAE : 29- 38: pngna Vtnit-Lats--E swkdk SSB_PSEAE : 57- 69: tewhr VvffgrLaeiagE ylrkg SSB_PSEAE : 58- 69: ewhrv Vffgr-LaeiagE ylrkg SSB_RAT : 54- 63: egknp Vtifs-Latn--E mwrsg SSB_SALTY : 8- 19: rgvnk VilvgnLgqdp-E vrymp SSB_SALTY : 29- 38: psgga Vanlt-Lats--E swrdk SSB_SALTY : 57- 69: tewhr VvmfgkLaevagE ylrkg SSB_SALTY : 58- 69: ewhrv Vmfgk-LaevagE ylrkg SSB_SERMA : 8- 19: rgvnk VilvgnLgqdp-E vrymp SSB_SERMA : 29- 38: pngga Vanit-Lats--E swrdk SSB_SERMA : 57- 69: tewhr VvlfgkLaevagE ylrkg SSB_SERMA : 58- 69: ewhrv Vlfgk-LaevagE ylrkg G 7: 10.7213 32( 19) R-x(1,2)-G-[ADEGNQS]-[ADEGNQS] Occurences: 32(19) RIM1_YEAST : 27- 31: msivg Ri-GSE fteht SSB2_ECOLI : 72- 76: ageyl Rk-GAQ vyieg SSB2_ECOLI : 113- 118: mqmlg RaaGAQ tqpee SSB7_ECOLI : 72- 76: ageyl Rk-GAQ vyieg SSBF_ECOLI : 72- 76: agecl Rk-GAQ vyieg SSBF_ECOLI : 113- 118: mqmlv RaaGAQ tqpee SSBP_ECOLI : 13- 17: vilvg Rl-GND pevry SSBP_ECOLI : 72- 76: ageyl Rk-GAQ vyieg SSBR_ECOLI : 13- 17: vilvg Rl-GND pevry SSBR_ECOLI : 72- 76: ageyl Rk-GAQ vyieg SSBR_XENLA : 21- 25: vqllg Rv-GQD pvmrq SSBR_XENLA : 49- 53: tnelw Rs-GEN evfqp SSBS_XENLA : 36- 40: vqllg Rv-GQD pvmrq SSBS_XENLA : 64- 68: tnelw Rs-GES etfht SSB_BACSU : 145- 150: qnnqr RnqGNS fnddp SSB_BRUAB : 117- 122: qmlds RseGGE grsfg SSB_BRUAB : 124- 129: eggeg RsfGGG gnrnq SSB_ECOLI : 72- 76: aseyl Rk-GSQ vyieg SSB_ECOLI : 115- 119: qmlgg Rq-GGG apagg SSB_ECOLI : 115- 120: qmlgg RqgGGA paggn SSB_HAEIN : 71- 75: cgeyl Rk-GSQ vyveg SSB_HUMAN : 38- 42: vhllg Rv-GQD pvlrq SSB_HUMAN : 66- 70: tnemw Rs-GDS evyql SSB_MYCLE : 122- 126: vnkas Rs-GGG gggfg SSB_MYCLE : 122- 127: vnkas RsgGGG ggfgs SSB_PROMI : 72- 76: ageyl Rk-GSQ vyieg SSB_PROMI : 115- 119: qmlgg Rg-GQD napsq SSB_PSEAE : 72- 76: ageyl Rk-GSQ vyveg SSB_PSEAE : 115- 120: qllgg RpsGDD sqrap SSB_RAT : 38- 42: vqllg Rv-GQD pvmrq SSB_RAT : 66- 70: tnemw Rs-GDN eayqm SSB_SALTY : 72- 76: ageyl Rk-GSQ vyieg SSB_SERMA : 72- 76: ageyl Rk-GSQ vyieg SSB_SERMA : 115- 119: qmlgg Rq-GGG apagq SSB_SERMA : 115- 120: qmlgg RqgGGA pagqs H 8: 10.5966 44( 19) V-x(2)-[FILV]-G Occurences: 44(19) RIM1_YEAST : 25- 29: skmsi VgrIG sefte SSB2_ECOLI : 8- 12: rgink VilVG rlgkd SSB2_ECOLI : 11- 15: nkvil VgrLG kdpev SSB2_ECOLI : 57- 61: tewhr VvlFG klaev SSB7_ECOLI : 8- 12: rgink VilVG rlgkd SSB7_ECOLI : 11- 15: nkvil VgrLG kdpev SSB7_ECOLI : 57- 61: tewhr VvlFG klaev SSBF_ECOLI : 8- 12: rgink VilVG rlgkd SSBF_ECOLI : 11- 15: nkvil VgrLG kdpev SSBF_ECOLI : 57- 61: tewhr VvlFG klaev SSBP_ECOLI : 8- 12: rgink VilVG rlgnd SSBP_ECOLI : 11- 15: nkvil VgrLG ndpev SSBP_ECOLI : 57- 61: tewhr VvlFG klaev SSBR_ECOLI : 8- 12: rgink VilVG rlgnd SSBR_ECOLI : 11- 15: nkvil VgrLG ndpev SSBR_ECOLI : 57- 61: tewhr VvlFG klaev SSBR_XENLA : 16- 20: rsmnk VqlLG rvgqd SSBS_XENLA : 31- 35: rsink VqlLG rvgqd SSB_BACSU : 5- 9: mlnr VvlVG rltkd SSB_BRUAB : 8- 12: gsvnk VilVG nlgad SSB_BRUAB : 11- 15: nkvil VgnLG adpei SSB_ECOLI : 8- 12: rgvnk VilVG nlgqd SSB_ECOLI : 11- 15: nkvil VgnLG qdpev SSB_ECOLI : 57- 61: tewhr VvlFG klaev SSB_ECOLI : 102- 106: yttev VvnVG gtmqm SSB_HAEIN : 7- 11: agink ViiVG hlgnd SSB_HAEIN : 10- 14: nkvii VghLG ndpei SSB_HUMAN : 33- 37: rslnr VhlLG rvgqd SSB_HUMAN : 72- 76: sgdse VyqLG dvsqk SSB_MYCLE : 103- 107: vveve VdeIG pslry SSB_PROMI : 8- 12: rgvnk VilIG nlgqd SSB_PROMI : 57- 61: tewhr VviFG klaei SSB_PROMI : 102- 106: ystev VvnIG gtmqm SSB_PSEAE : 8- 12: rgvnk VilVG nvggd SSB_PSEAE : 11- 15: nkvil VgnVG gdpet SSB_PSEAE : 57- 61: tewhr VvfFG rlaei SSB_RAT : 33- 37: rslnr VqlLG rvgqd SSB_SALTY : 8- 12: rgvnk VilVG nlgqd SSB_SALTY : 11- 15: nkvil VgnLG qdpev SSB_SALTY : 57- 61: tewhr VvmFG klaev SSB_SERMA : 8- 12: rgvnk VilVG nlgqd SSB_SERMA : 11- 15: nkvil VgnLG qdpev SSB_SERMA : 57- 61: tewhr VvlFG klaev SSB_SERMA : 102- 106: yttei VvnVG gtmqm I 9: 10.5102 19( 19) P-x(0,2)-R-x(2,4)-G Occurences: 19(19) RIM1_YEAST : 52- 56: siasq P--Rrd--G qtnwy SSB2_ECOLI : 18- 26: rlgkd PevRyipnG gavan SSB7_ECOLI : 18- 26: rlgkd PevRyipnG gavan SSBF_ECOLI : 18- 26: rlgkd PevRyipnG gavan SSBP_ECOLI : 18- 26: rlgnd PevRyipnG gavan SSBR_ECOLI : 18- 26: rlgnd PevRyipnG gavan SSBR_XENLA : 26- 33: rvgqd PvmRqae-G knpvt SSBS_XENLA : 41- 48: rvgqd PvmRqae-G knpvt SSB_BACSU : 15- 23: rltkd PelRytpnG aavat SSB_BRUAB : 18- 26: nlgad PeiRrlnsG dmvan SSB_ECOLI : 18- 26: nlgqd PevRympnG gavan SSB_HAEIN : 17- 25: hlgnd PeiRtmpnG davan SSB_HUMAN : 43- 50: rvgqd PvlRqve-G knpvt SSB_MYCLE : 17- 25: nltad PelRftssG aavvn SSB_PROMI : 18- 26: nlgqd PeiRympsG gavan SSB_PSEAE : 18- 26: nvggd PetRympnG navtn SSB_RAT : 43- 50: rvgqd PvmRqve-G knpvt SSB_SALTY : 18- 26: nlgqd PevRympsG gavan SSB_SERMA : 18- 26: nlgqd PevRympnG gavan J 10: 10.2227 25( 19) E-x(2)-[DEQRS]-x-G Occurences: 25(19) RIM1_YEAST : 76- 81: inflt EyvRkG alvyv SSB2_ECOLI : 69- 74: aevag EylRkG aqvyi SSB2_ECOLI : 166- 171: qlqpp EgdDyG fsddi SSB7_ECOLI : 69- 74: aevag EylRkG aqvyi SSBF_ECOLI : 69- 74: aevag EclRkG aqvyi SSBF_ECOLI : 166- 171: qpqpp EgdDyG fsddi SSBP_ECOLI : 69- 74: aevag EylRkG aqvyi SSBP_ECOLI : 162- 167: qpqtp EgeDyG fsddi SSBR_ECOLI : 69- 74: aevag EylRkG aqvyi SSBR_ECOLI : 162- 167: qpqtp EgeDyG fsddi SSBR_XENLA : 46- 51: slatn ElwRsG enevf SSBS_XENLA : 61- 66: slatn ElwRsG esetf SSB_BACSU : 118- 123: sggyn EgnSgG gqyfg SSB_BRUAB : 122- 127: rsegg EgrSfG gggnr SSB_ECOLI : 69- 74: aevas EylRkG sqvyi SSB_HAEIN : 68- 73: aeicg EylRkG sqvyv SSB_HUMAN : 63- 68: slatn EmwRsG dsevy SSB_HUMAN : 71- 76: rsgds EvyQlG dvsqk SSB_MYCLE : 102- 107: tvvev EvdEiG pslry SSB_PROMI : 69- 74: aeiag EylRkG sqvyi SSB_PSEAE : 69- 74: aeiag EylRkG sqvyv SSB_RAT : 63- 68: slatn EmwRsG dneay SSB_RAT : 71- 76: rsgdn EayQmG dvsqk SSB_SALTY : 69- 74: aevag EylRkG sqvyi SSB_SERMA : 69- 74: aevag EylRkG sqvyi K 11: 10.2076 26( 19) E-G-x(3)-[AGSTV] Occurences: 26(19) RIM1_YEAST : 126- 131: kleda EGqenA asse SSB2_ECOLI : 80- 85: aqvyi EGqlrT rswed SSB2_ECOLI : 123- 128: qtqpe EGqqfS aqpqp SSB2_ECOLI : 166- 171: qlqpp EGddyG fsddi SSB7_ECOLI : 80- 85: aqvyi EGqlrT rswed SSBF_ECOLI : 80- 85: aqvyi EGqlrT rswed SSBF_ECOLI : 123- 128: qtqpe EGqqfS gqpqp SSBF_ECOLI : 166- 171: qpqpp EGddyG fsddi SSBP_ECOLI : 80- 85: aqvyi EGqlrT rswdd SSBP_ECOLI : 162- 167: qpqtp EGedyG fsddi SSBR_ECOLI : 80- 85: aqvyi EGqlrT rswdd SSBR_ECOLI : 162- 167: qpqtp EGedyG fsddi SSBR_XENLA : 32- 37: vmrqa EGknpV tifsl SSBS_XENLA : 47- 52: vmrqa EGknpV tifsl SSB_BACSU : 118- 123: sggyn EGnsgG gqyfg SSB_BRUAB : 81- 86: akvyi EGalqT rkwqd SSB_BRUAB : 122- 127: rsegg EGrsfG gggnr SSB_ECOLI : 80- 85: sqvyi EGqlrT rkwtd SSB_HAEIN : 79- 84: sqvyv EGrlkT rkwqd SSB_HUMAN : 49- 54: vlrqv EGknpV tifsl SSB_MYCLE : 92- 97: sfetr EGekrT vveve SSB_PROMI : 80- 85: sqvyi EGqlqT rkwqd SSB_PSEAE : 80- 85: sqvyv EGslrT rkwqg SSB_RAT : 49- 54: vmrqv EGknpV tifsl SSB_SALTY : 80- 85: sqvyi EGqlrT rkwtd SSB_SERMA : 80- 85: sqvyi EGslqT rkwqd L 12: 8.3401 32( 19) L-R Occurences: 32(19) RIM1_YEAST : 3- 4: mf LR tqarf SSB2_ECOLI : 71- 72: vagey LR kgaqv SSB2_ECOLI : 83- 84: yiegq LR trswe SSB7_ECOLI : 71- 72: vagey LR kgaqv SSB7_ECOLI : 83- 84: yiegq LR trswe SSBF_ECOLI : 71- 72: vagec LR kgaqv SSBF_ECOLI : 83- 84: yiegq LR trswe SSBP_ECOLI : 71- 72: vagey LR kgaqv SSBP_ECOLI : 83- 84: yiegq LR trswd SSBR_ECOLI : 71- 72: vagey LR kgaqv SSBR_ECOLI : 83- 84: yiegq LR trswd SSBR_XENLA : 78- 79: vfrpg LR dva SSBS_XENLA : 93- 94: vfrpg LR dvayq SSBS_XENLA : 142- 143: iflsd LR dkl SSB_BACSU : 17- 18: tkdpe LR ytpng SSB_BRUAB : 32- 33: dmvan LR iatse SSB_ECOLI : 71- 72: vasey LR kgsqv SSB_ECOLI : 83- 84: yiegq LR trkwt SSB_HAEIN : 70- 71: icgey LR kgsqv SSB_HUMAN : 10- 11: pvlqv LR qfvrh SSB_HUMAN : 45- 46: gqdpv LR qvegk SSB_HUMAN : 94- 95: vfrpg LR dvayq SSB_MYCLE : 19- 20: tadpe LR ftssg SSB_MYCLE : 55- 56: gealf LR cniwr SSB_MYCLE : 110- 111: eigps LR yatak SSB_PROMI : 71- 72: iagey LR kgsqv SSB_PSEAE : 71- 72: iagey LR kgsqv SSB_PSEAE : 83- 84: yvegs LR trkwq SSB_RAT : 94- 95: vfrpg LR dvayq SSB_SALTY : 71- 72: vagey LR kgsqv SSB_SALTY : 83- 84: yiegq LR trkwt SSB_SERMA : 71- 72: vagey LR kgsqv M 13: 8.3401 27( 19) A-T Occurences: 27(19) RIM1_YEAST : 12- 13: arffh AT tkkmd SSB2_ECOLI : 35- 36: anlqv AT setwr SSB7_ECOLI : 35- 36: anlqv AT seswr SSBF_ECOLI : 35- 36: anlqv AT seswr SSBP_ECOLI : 35- 36: anlqv AT seswr SSBP_ECOLI : 136- 137: pqsad AT kkgga SSBR_ECOLI : 35- 36: anlqv AT seswr SSBR_ECOLI : 136- 137: pqsad AT kkgga SSBR_XENLA : 43- 44: tifsl AT nelwr SSBS_XENLA : 58- 59: tifsl AT nelwr SSBS_XENLA : 128- 129: nvrrq AT tiiad SSB_BACSU : 27- 28: ngaav AT ftlav SSB_BRUAB : 35- 36: anlri AT seswr SSB_ECOLI : 35- 36: anitl AT seswr SSB_ECOLI : 44- 45: swrdk AT gemke SSB_HAEIN : 34- 35: anisv AT seswn SSB_HUMAN : 60- 61: tifsl AT nemwr SSB_HUMAN : 129- 130: nvrrq AT tiiad SSB_MYCLE : 113- 114: pslry AT akvnk SSB_PROMI : 35- 36: anltl AT seswr SSB_PSEAE : 35- 36: tnitl AT seswk SSB_RAT : 60- 61: tifsl AT nemwr SSB_RAT : 129- 130: nvrrq AT tiiad SSB_SALTY : 35- 36: anltl AT seswr SSB_SERMA : 35- 36: anitl AT seswr SSB_SERMA : 44- 45: swrdk AT geqke SSB_SERMA : 160- 161: qnsap AT snepp N 14: 8.3401 25( 19) R-x(2)-Q Occurences: 25(19) RIM1_YEAST : 54- 57: asqpr RdgQ tnwyn SSB2_ECOLI : 41- 44: tsetw RdkQ tgkmr SSB7_ECOLI : 41- 44: tsesw RdkQ tgeir SSBF_ECOLI : 41- 44: tsesw RdkQ tgemr SSBP_ECOLI : 41- 44: tsesw RdkQ tgemr SSBR_ECOLI : 41- 44: tsesw RdkQ tgemr SSBR_XENLA : 21- 24: vqllg RvgQ dpvmr SSBS_XENLA : 36- 39: vqllg RvgQ dpvmr SSB_BACSU : 144- 147: nqnnq RrnQ gnsfn SSB_BRUAB : 41- 44: tsesw RdrQ tgerk SSB_BRUAB : 87- 90: galqt RkwQ dqngn SSB_ECOLI : 154- 157: ggaqs RpqQ sapaa SSB_HAEIN : 85- 88: grlkt RkwQ dqngq SSB_HUMAN : 38- 41: vhllg RvgQ dpvlr SSB_MYCLE : 82- 85: vivtg RlkQ rsfet SSB_PROMI : 41- 44: tsesw RdkQ tgemk SSB_PROMI : 86- 89: gqlqt RkwQ dqsgq SSB_PROMI : 115- 118: qmlgg RggQ dnaps SSB_PROMI : 148- 151: ggaps RpaQ qpaaa SSB_PSEAE : 86- 89: gslrt RkwQ gqdgq SSB_PSEAE : 131- 134: repmq RpqQ apqqq SSB_RAT : 38- 41: vqllg RvgQ dpvmr SSB_SALTY : 41- 44: tsesw RdkQ tgemk SSB_SERMA : 86- 89: gslqt RkwQ dqsgq SSB_SERMA : 152- 155: gqqqs RpaQ nsapa O 15: 7.8401 19( 19) G-x(2,3)-V Occurences: 19(19) RIM1_YEAST : 81- 84: eyvrk Gal-V yvead SSB2_ECOLI : 26- 29: ryipn Gga-V anlqv SSB7_ECOLI : 26- 29: ryipn Gga-V anlqv SSBF_ECOLI : 26- 29: ryipn Gga-V anlqv SSBP_ECOLI : 26- 29: ryipn Gga-V anlqv SSBR_ECOLI : 26- 29: ryipn Gga-V anlqv SSBR_XENLA : 33- 37: mrqae GknpV tifsl SSBS_XENLA : 48- 52: mrqae GknpV tifsl SSB_BACSU : 23- 26: rytpn Gaa-V atftl SSB_BRUAB : 26- 29: rrlns Gdm-V anlri SSB_ECOLI : 26- 29: rympn Gga-V anitl SSB_HAEIN : 25- 28: rtmpn Gda-V anisv SSB_HUMAN : 50- 54: lrqve GknpV tifsl SSB_MYCLE : 25- 28: rftss Gaa-V vnftv SSB_PROMI : 26- 29: rymps Gga-V anltl SSB_PSEAE : 26- 29: rympn Gna-V tnitl SSB_RAT : 50- 54: mrqve GknpV tifsl SSB_SALTY : 26- 29: rymps Gga-V anltl SSB_SERMA : 26- 29: rympn Gga-V anitl P 16: 7.8401 44( 19) G-x(0,1)-L Occurences: 44(19) RIM1_YEAST : 81- 83: eyvrk GaL vyvea SSB2_ECOLI : 12- 14: kvilv GrL gkdpe SSB2_ECOLI : 61- 63: rvvlf GkL aevag SSB2_ECOLI : 81- 83: qvyie GqL rtrsw SSB7_ECOLI : 12- 14: kvilv GrL gkdpe SSB7_ECOLI : 61- 63: rvvlf GkL aevag SSB7_ECOLI : 81- 83: qvyie GqL rtrsw SSBF_ECOLI : 12- 14: kvilv GrL gkdpe SSBF_ECOLI : 61- 63: rvvlf GkL aevag SSBF_ECOLI : 81- 83: qvyie GqL rtrsw SSBP_ECOLI : 12- 14: kvilv GrL gndpe SSBP_ECOLI : 61- 63: rvvlf GkL aevag SSBP_ECOLI : 81- 83: qvyie GqL rtrsw SSBR_ECOLI : 12- 14: kvilv GrL gndpe SSBR_ECOLI : 61- 63: rvvlf GkL aevag SSBR_ECOLI : 81- 83: qvyie GqL rtrsw SSBR_XENLA : 77- 78: svfrp G-L rdva SSBS_XENLA : 92- 93: svfrp G-L rdvay SSB_BACSU : 9- 11: rvvlv GrL tkdpe SSB_BACSU : 68- 70: nflkk GsL agvdg SSB_BACSU : 75- 77: lagvd GrL qtrny SSB_BRUAB : 12- 14: kvilv GnL gadpe SSB_BRUAB : 82- 84: kvyie GaL qtrkw SSB_BRUAB : 109- 111: lqkfr GeL qmlds SSB_ECOLI : 12- 14: kvilv GnL gqdpe SSB_ECOLI : 61- 63: rvvlf GkL aevas SSB_ECOLI : 81- 83: qvyie GqL rtrkw SSB_HAEIN : 11- 13: kviiv GhL gndpe SSB_HAEIN : 80- 82: qvyve GrL ktrkw SSB_HUMAN : 93- 94: svfrp G-L rdvay SSB_MYCLE : 11- 13: titiv GnL tadpe SSB_MYCLE : 81- 83: rvivt GrL kqrsf SSB_PROMI : 12- 14: kvili GnL gqdpe SSB_PROMI : 61- 63: rvvif GkL aeiag SSB_PROMI : 81- 83: qvyie GqL qtrkw SSB_PSEAE : 61- 63: rvvff GrL aeiag SSB_PSEAE : 81- 83: qvyve GsL rtrkw SSB_RAT : 93- 94: svfrp G-L rdvay SSB_SALTY : 12- 14: kvilv GnL gqdpe SSB_SALTY : 61- 63: rvvmf GkL aevag SSB_SALTY : 81- 83: qvyie GqL rtrkw SSB_SERMA : 12- 14: kvilv GnL gqdpe SSB_SERMA : 61- 63: rvvlf GkL aevag SSB_SERMA : 81- 83: qvyie GsL qtrkw Q 17: 7.8401 25( 19) V-x(0,1)-F Occurences: 25(19) RIM1_YEAST : 65- 66: wynit V-F nepqi RIM1_YEAST : 94- 95: daany V-F erddg SSB2_ECOLI : 58- 60: ewhrv VlF gklae SSB7_ECOLI : 58- 60: ewhrv VlF gklae SSBF_ECOLI : 58- 60: ewhrv VlF gklae SSBP_ECOLI : 58- 60: ewhrv VlF gklae SSBR_ECOLI : 58- 60: ewhrv VlF gklae SSBR_XENLA : 55- 56: sgene V-F qpagd SSBR_XENLA : 73- 74: whrvs V-F rpglr SSBS_XENLA : 9- 10: rpalq V-F rqfar SSBS_XENLA : 88- 89: whris V-F rpglr SSB_BACSU : 90- 91: qqgqr V-F vtevq SSB_BACSU : 100- 102: vqaes VqF lepkn SSB_BRUAB : 58- 60: ewhsv ViF nenla SSB_ECOLI : 58- 60: ewhrv VlF gklae SSB_HAEIN : 57- 58: ewhri V-F yrrqa SSB_HUMAN : 89- 90: whris V-F rpglr SSB_MYCLE : 29- 31: sgaav VnF tvast SSB_PROMI : 58- 60: ewhrv ViF gklae SSB_PSEAE : 57- 59: tewhr VvF fgrla SSB_PSEAE : 58- 59: ewhrv V-F fgrla SSB_PSEAE : 58- 60: ewhrv VfF grlae SSB_RAT : 9- 10: rpvlq V-F rqfvr SSB_RAT : 89- 90: whris V-F rpglr SSB_SALTY : 58- 60: ewhrv VmF gklae SSB_SERMA : 58- 60: ewhrv VlF gklae R 18: 7.8401 35( 19) S-x(2,3)-R Occurences: 35(19) RIM1_YEAST : 23- 27: dfskm SivgR igsef RIM1_YEAST : 50- 53: kysia Sqp-R rdgqt RIM1_YEAST : 50- 54: kysia SqprR dgqtn SSB2_ECOLI : 37- 41: lqvat SetwR dkqtg SSB7_ECOLI : 37- 41: lqvat SeswR dkqtg SSBF_ECOLI : 37- 41: lqvat SeswR dkqtg SSBP_ECOLI : 37- 41: lqvat SeswR dkqtg SSBR_ECOLI : 37- 41: lqvat SeswR dkqtg SSBR_XENLA : 72- 75: twhrv Svf-R pglrd SSBS_XENLA : 87- 90: twhri Svf-R pglrd SSBS_XENLA : 140- 143: niifl Sdl-R dkl SSB_BACSU : 41- 44: tftnq Sge-R eadfi SSB_BRUAB : 37- 41: lriat SeswR drqtg SSB_BRUAB : 39- 43: iatse SwrdR qtger SSB_ECOLI : 37- 41: itlat SeswR dkatg SSB_ECOLI : 68- 72: laeva SeylR kgsqv SSB_ECOLI : 92- 96: kwtdq SgqdR yttev SSB_HAEIN : 38- 42: vatse SwndR ntger SSB_HAEIN : 129- 133: gapqs SyqaR qtnng SSB_HUMAN : 29- 32: lvler Sln-R vhllg SSB_HUMAN : 88- 91: twhri Svf-R pglrd SSB_MYCLE : 35- 38: nftva Stp-R iydrq SSB_MYCLE : 70- 73: envae Slt-R garvi SSB_MYCLE : 87- 91: rlkqr SfetR egekr SSB_MYCLE : 132- 135: gggfg Sgs-R qrllk SSB_MYCLE : 134- 137: gfgsg Srq-R llk SSB_PROMI : 37- 41: ltlat SeswR dkqtg SSB_PROMI : 92- 96: kwqdq SgqdR ystev SSB_PSEAE : 82- 86: vyveg SlrtR kwqgq SSB_RAT : 29- 32: lvler Sln-R vqllg SSB_RAT : 88- 91: twhri Svf-R pglrd SSB_RAT : 141- 145: niifl SdqaR ekpln SSB_SALTY : 37- 41: ltlat SeswR dkqtg SSB_SERMA : 37- 41: itlat SeswR dkatg SSB_SERMA : 82- 86: vyieg SlqtR kwqdq SSB_SERMA : 92- 96: kwqdq SgqdR yttei S 19: 7.8401 38( 19) S-x(4,5)-G Occurences: 38(19) RIM1_YEAST : 20- 26: kkmdf SkmsivG rigse RIM1_YEAST : 23- 29: dfskm SivgriG sefte RIM1_YEAST : 50- 56: kysia SqprrdG qtnwy SSB2_ECOLI : 87- 92: qlrtr Swedn-G itryv SSB7_ECOLI : 87- 92: qlrtr Swedn-G itryv SSBF_ECOLI : 87- 92: qlrtr Swedn-G itryv SSBP_ECOLI : 87- 92: qlrtr Swddn-G itryi SSBR_ECOLI : 87- 92: qlrtr Swddn-G itryi SSBR_XENLA : 72- 77: twhrv Svfrp-G lrdva SSBS_XENLA : 87- 92: twhri Svfrp-G lrdva SSB_BACSU : 69- 75: flkkg SlagvdG rlqtr SSB_BACSU : 113- 119: gggsg SggyneG nsggg SSB_BRUAB : 116- 121: lqmld Srseg-G egrsf SSB_BRUAB : 118- 123: mldsr Segge-G rsfgg SSB_BRUAB : 125- 130: ggegr Sfggg-G nrnqm SSB_BRUAB : 136- 141: nrnqm Sdysg-G ggdfg SSB_BRUAB : 136- 142: nrnqm SdysggG gdfgs SSB_BRUAB : 147- 153: ggdfg SsgpssG ssggf SSB_BRUAB : 148- 153: gdfgs Sgpss-G ssggf SSB_BRUAB : 151- 156: gssgp Ssgss-G gfsrd SSB_BRUAB : 151- 157: gssgp SsgssgG fsrdl SSB_BRUAB : 152- 157: ssgps Sgssg-G fsrdl SSB_ECOLI : 68- 74: laeva SeylrkG sqvyi SSB_ECOLI : 75- 81: ylrkg SqvyieG qlrtr SSB_HAEIN : 74- 80: ylrkg SqvyveG rlktr SSB_HUMAN : 70- 76: wrsgd SevyqlG dvsqk SSB_HUMAN : 88- 93: twhri Svfrp-G lrdva SSB_HUMAN : 106- 112: yvkkg SriyleG kidyg SSB_MYCLE : 44- 50: iydrq SgewkdG ealfl SSB_MYCLE : 87- 93: rlkqr SfetreG ekrtv SSB_MYCLE : 121- 126: kvnka Srsgg-G gggfg SSB_MYCLE : 121- 127: kvnka SrsgggG ggfgs SSB_MYCLE : 123- 128: nkasr Sgggg-G gfgsg SSB_MYCLE : 123- 129: nkasr SgggggG fgsgs SSB_PROMI : 75- 81: ylrkg SqvyieG qlqtr SSB_PROMI : 123- 128: qdnap Sqgqg-G wgqpq SSB_PROMI : 138- 143: qqpqa Sqqfs-G gapsr SSB_PROMI : 138- 144: qqpqa SqqfsgG apsrp SSB_PSEAE : 75- 81: ylrkg SqvyveG slrtr SSB_RAT : 88- 93: twhri Svfrp-G lrdva SSB_SALTY : 75- 81: ylrkg SqvyieG qlrtr SSB_SERMA : 75- 81: ylrkg SqvyieG slqtr SSB_SERMA : 125- 130: apagq Saggq-G gwgqp SSB_SERMA : 125- 131: apagq SaggqgG wgqpq T 20: 7.8401 35( 19) T-x(2,3)-R Occurences: 35(19) RIM1_YEAST : 5- 8: mflr Tqa-R ffhat RIM1_YEAST : 75- 79: qinfl TeyvR kgalv SSB2_ECOLI : 45- 49: wrdkq TgkmR eqtew SSB2_ECOLI : 52- 56: kmreq TewhR vvlfg SSB2_ECOLI : 148- 151: kggak Tkg-R grkva SSB7_ECOLI : 45- 49: wrdkq TgeiR eqtew SSB7_ECOLI : 52- 56: eireq TewhR vvlfg SSB7_ECOLI : 146- 149: kggak Tkg-R erkaa SSBF_ECOLI : 45- 49: wrdkq TgemR eqtew SSBF_ECOLI : 52- 56: emreq TewhR vvlfg SSBF_ECOLI : 148- 151: kggak Tkg-R grkaa SSBP_ECOLI : 45- 49: wrdkq TgemR eqtew SSBP_ECOLI : 52- 56: emreq TewhR vvlfg SSBP_ECOLI : 144- 147: kggak Tkg-R grkaa SSBR_ECOLI : 45- 49: wrdkq TgemR eqtew SSBR_ECOLI : 52- 56: emreq TewhR vvlfg SSBR_ECOLI : 144- 147: kggak Tkg-R erkaa SSBR_XENLA : 66- 70: dvnqk TtwhR vsvfr SSBR_XENLA : 67- 70: vnqkt Twh-R vsvfr SSBS_XENLA : 81- 85: dvnqk TtwhR isvfr SSBS_XENLA : 82- 85: vnqkt Twh-R isvfr SSB_BACSU : 53- 56: fincv Twr-R qaenv SSB_BRUAB : 45- 48: wrdrq Tge-R kdrte SSB_ECOLI : 52- 56: emkeq TewhR vvlfg SSB_HAEIN : 44- 47: wndrn Tge-R revte SSB_HAEIN : 44- 48: wndrn TgerR evtew SSB_HAEIN : 51- 55: errev TewhR ivfyr SSB_HUMAN : 82- 86: dvsqk TtwhR isvfr SSB_HUMAN : 83- 86: vsqkt Twh-R isvfr SSB_MYCLE : 72- 76: vaesl TrgaR vivtg SSB_PROMI : 52- 56: emkek TewhR vvifg SSB_PSEAE : 52- 56: qqqer TewhR vvffg SSB_RAT : 82- 86: dvsqk TtwhR isvfr SSB_RAT : 83- 86: vsqkt Twh-R isvfr SSB_SALTY : 52- 56: emkeq TewhR vvmfg SSB_SERMA : 52- 56: eqkek TewhR vvlfg Number of patterns evaluated by Pratt:172 Total running time: 1 seconds