------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file SRP1_TIP1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SRP1_TIP1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PAU1_YEAST 120 PAU2_YEAST 120 PAU3_YEAST 124 TIP1_YEAST 210 TIR1_YEAST 254 TIR2_YEAST 251 YB8K_YEAST 120 YFC0_YEAST 122 YHE6_YEAST 120 YIB1_YEAST 269 YIR6_YEAST 120 YIW1_YEAST 124 YKW4_YEAST 123 YOE2_YEAST 124 Pratt run started at Thu Feb 6 21:14:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 27.6904 14( 14) T-x(1,2)-V-x(0,2)-P-W-Y-x(2)-R-L 2: 24.0203 15( 14) V-x(0,2)-P-W-Y-x(2)-R-L 3: 20.8503 14( 14) P-W-Y-x(2)-R-L 4: 19.8503 17( 14) A-x-V-x(0,1)-A-x(0,1)-A-x-A 5: 19.8503 21( 14) A-x(3)-A-x(1,2)-A-x(0,1)-A-x-A 6: 19.3503 14( 14) A-I-A-x(0,2)-A-x(1,2)-A 7: 19.3503 17( 14) A-G-x(0,2)-V-x(0,1)-A-x(2)-A 8: 19.3503 30( 14) A-x(0,1)-G-x(0,2)-V-x-A-x(2)-A 9: 19.3503 30( 14) A-x(0,2)-G-x(0,1)-V-x-A-x(2)-A 10: 19.3503 22( 14) S-x-A-A-x(2,4)-A-x(0,1)-A 11: 19.3503 15( 14) L-x(2,4)-I-A-A-x(2,3)-A 12: 18.8503 15( 14) T-x(0,2)-S-x-A-x(0,2)-A-x(5)-A 13: 18.8503 17( 14) K-x(2)-S-x(1,3)-A-x(3,5)-A-x(5)-A 14: 16.6802 14( 14) W-Y-x(2)-R-L 15: 16.1802 14( 14) I-x(2)-A-L-x(0,1)-S 16: 16.1802 31( 14) A-x-S-x-A-x(1,2)-S 17: 16.1802 31( 14) A-x(1,2)-S-x-A-x-S 18: 16.1802 14( 14) L-x(3)-I-x(2)-A-x(1,2)-S 19: 16.1802 14( 14) I-x-A-x(0,1)-L-A 20: 16.1802 25( 14) I-A-A-x(1,2)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 54.6335 14( 14) S-x-A-A-x(2,4)-A-x(0,1)-A-x-[AGST]-[AS]-[EGST]-x(2)-[AST]-[AST]-[APST]-[ASTV]-x-[AST]-x(2)-[ADEQS]-x(2)-[ADSV]-[ENPS]-x-[ASV]-[AENS]-x-[AGSV]-x(2)-[AGSV] B 2: 53.9563 14( 14) T-x(1,2)-V-x(0,2)-P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] C 3: 50.6540 14( 14) T-x(0,2)-S-x-A-x(0,2)-A-[GPST]-x-[AS]-[AS]-x-A-[APS]-[GST]-x-[AES]-[AT]-[AST]-x-[AST]-x-[ASTV]-x(3)-[EPS]-[DERS] D 4: 50.2862 15( 14) V-x(0,2)-P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] E 5: 47.1162 14( 14) P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] F 6: 42.9461 14( 14) W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] G 7: 33.8823 19( 14) I-A-A-x(1,2)-A-[ASV]-[AIV]-x-[APT]-[AGQST]-x-[AEQST]-x-[ADNSTV]-x(3)-[ASTV]-x(3)-[DEPS] H 8: 33.4733 15( 14) L-x(2,4)-I-A-A-x(2,3)-A-x(2)-[AQS]-x(4)-[AEGT]-x-[ANPT]-[ASTV]-x(3)-[ADGS]-x(2)-[DRS] I 9: 30.7055 16( 14) A-x-S-x-A-x(1,2)-S-x-[DS]-[AEG]-[AI]-x-[ST]-x(2)-[ANPS] J 10: 29.8243 16( 14) K-x-[AST]-S-x(1,3)-A-x(3,5)-A-x(2)-[AS]-[AGS]-x-A-x(2)-[PST] K 11: 28.5690 14( 14) A-[GV]-V-x(0,1)-A-x(0,1)-A-[AI]-A-x(2)-[AILV] L 12: 28.4637 14( 14) A-x(1,2)-S-x-A-[ALPV]-S-x-[ADS]-[AGSV]-x(2)-[AST]-x(2)-[ANP] M 13: 26.9452 24( 14) A-x(0,2)-G-x(0,1)-V-x-A-[AGI]-[AIP]-A-x-[AILV] N 14: 25.3201 14( 14) A-G-x(0,2)-V-x(0,1)-A-[AGI]-[AI]-A O 15: 24.7060 30( 14) A-x(0,1)-G-x(0,2)-V-x-A-[AGI]-[AIP]-A P 16: 24.6493 20( 14) A-x(2)-[AGV]-A-x(1,2)-A-x(0,1)-A-[APST]-A Q 17: 24.0969 14( 14) L-x-[EPS]-x-I-x(2)-A-x(1,2)-S-x-[DGS]-[GIP] R 18: 19.3503 14( 14) A-I-A-x(0,2)-A-x(1,2)-A S 19: 18.8678 17( 14) A-[GV]-V-x(0,1)-A-x(0,1)-A T 20: 18.3892 14( 14) I-x(2)-A-L-x(0,1)-S-x-[DGST] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 54.6335 14( 14) S-x-A-A-x(2,4)-A-x(0,1)-A-x-[AGST]-[AS]-[EGST]-x(2)-[AST]-[AST]-[APST]-[ASTV]-x-[AST]-x(2)-[ADEQS]-x(2)-[ADSV]-[ENPS]-x-[ASV]-[AENS]-x-[AGSV]-x(2)-[AGSV] Occurences: 14(14) PAU1_YEAST : 6- 40: mvklt SiAAgv--A-AiAATasATTTlTqsDerVNlVElGvyV sdira PAU2_YEAST : 6- 40: mvklt SiAAgv--A-AiAATasATTTlAqsDerVNlVElGvyV sdira PAU3_YEAST : 6- 40: mvklt SiAAgv--A-AiAAGiaAAPAtTtlSpsDErVNlVelG vyvsd TIP1_YEAST : 122- 158: eaass SeAAssskA-AsSSEatSSAApSssAapSSsAApSssA esssk TIR1_YEAST : 127- 163: saapt SsAApsssA-ApTSSaaSSSSeAksSsaAPsSSeAksS saaps TIR2_YEAST : 123- 159: sstea SsAAtss-AvAsSSEttSSAVaSssEatSSaVAsSseA sssaa YB8K_YEAST : 6- 40: mvklt SiAAgv--A-AiAATasATTTlAqsDerVNlVElGvyV sdira YFC0_YEAST : 6- 42: mvklt SiAAgva-AiAaGASaaATTTlSqsDerVNlVElGvyV sdira YHE6_YEAST : 6- 40: mvklt SiAAgv--A-AiAATasATTTlAqsDerVNlVElGvyV sdira YIB1_YEAST : 201- 235: akssg SsAAss--A-AsSASskASSAaSssAkaSSsAEkStnS sssat YIR6_YEAST : 6- 40: mvklt SiAAgv--A-AiAATasATTTlAqsDerVNlVElGvyV sdira YIW1_YEAST : 6- 40: mvklt SiAAgv--A-AiAAGvaAAPAtTtlSpsDErVNlVelG vyvsd YKW4_YEAST : 6- 40: mvklt SiAAgv--A-AiAAGvaAAPAtTtlSpsDErVNlVelG vyvsd YOE2_YEAST : 6- 40: mvklt SiAAgv--A-AiAAGvaAAPAtTtlSpsDErVNlVelG vyvsd B 2: 53.9563 14( 14) T-x(1,2)-V-x(0,2)-P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] Occurences: 14(14) PAU1_YEAST : 93- 114: vtrmi Tg-V--PWYSTRLkPAIskAlSkDG iytia PAU2_YEAST : 93- 114: vtrmi Tg-V--PWYSSRLkPAIssAlSkDG iytia PAU3_YEAST : 96- 117: vtrvi Tg-V--PWYSTRLrPAIssAlSkDG iytai TIP1_YEAST : 89- 112: daitk Ti-VklPWYTTRLsSEIaaAlAsVS passe TIR1_YEAST : 93- 114: vskml Tm-V--PWYSSRLePALksLnGdAS ssaap TIR2_YEAST : 93- 114: vskml Tm-V--PWYSSRLlPELesLlGtST taass YB8K_YEAST : 93- 114: vtrmi Tg-V--PWYSSRLkPAIssAlSkDG iytia YFC0_YEAST : 95- 116: vtrvi Tg-V--PWYSSRLkPAIssAlSaDG iytia YHE6_YEAST : 93- 114: vtrmi Tg-V--PWYSSRLkPAIssAlSkDG iytit YIB1_YEAST : 91- 115: faqit TamVqvPWYSSRLePEIiaAlQsAG isits YIR6_YEAST : 93- 114: vtrmi Tg-V--PWYSSRLkPAIssAlSkDG iytia YIW1_YEAST : 96- 117: vtrvi Tg-V--PWYSTRLrPAIssAlSkDG iytai YKW4_YEAST : 96- 117: vtrvi Tg-V--PWYSTRLrPAIssAlSkDG iytia YOE2_YEAST : 96- 117: vtrvi Tg-V--PWYSTRLrPAIssAlSkDG iytai C 3: 50.6540 14( 14) T-x(0,2)-S-x-A-x(0,2)-A-[GPST]-x-[AS]-[AS]-x-A-[APS]-[GST]-x-[AES]-[AT]-[AST]-x-[AST]-x-[ASTV]-x(3)-[EPS]-[DERS] Occurences: 14(14) PAU1_YEAST : 5- 30: mvkl T--SiA--AGvAAiAATaSATtTlTqsdER vnlve PAU2_YEAST : 5- 30: mvkl T--SiA--AGvAAiAATaSATtTlAqsdER vnlve PAU3_YEAST : 5- 30: mvkl T--SiA--AGvAAiAAGiAAApAtTtlsPS dervn TIP1_YEAST : 137- 162: sssea T--SsA--APsSSaAPSsSAApSsSaesSS kavss TIR1_YEAST : 126- 151: ssaap T--SsA--APsSSaAPTsSAAsSsSeakSS saaps TIR2_YEAST : 120- 147: taass TeaSsA--ATsSAvASSsETTsSaVassSE atssa YB8K_YEAST : 5- 30: mvkl T--SiA--AGvAAiAATaSATtTlAqsdER vnlve YFC0_YEAST : 5- 30: mvkl T--SiA--AGvAAiAAGaSAAaTtTlsqSD ervnl YHE6_YEAST : 5- 30: mvkl T--SiA--AGvAAiAATaSATtTlAqsdER vnlve YIB1_YEAST : 134- 163: gsesa TasSdAssASeSSsAASsSASeSsSaasSS asess YIR6_YEAST : 5- 30: mvkl T--SiA--AGvAAiAATaSATtTlAqsdER vnlve YIW1_YEAST : 5- 30: mvkl T--SiA--AGvAAiAAGvAAApAtTtlsPS dervn YKW4_YEAST : 5- 30: mvkl T--SiA--AGvAAiAAGvAAApAtTtlsPS dervn YOE2_YEAST : 5- 30: mvkl T--SiA--AGvAAiAAGvAAApAtTtlsPS dervn D 4: 50.2862 15( 14) V-x(0,2)-P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] Occurences: 15(14) PAU1_YEAST : 95- 114: rmitg V--PWYSTRLkPAIskAlSkDG iytia PAU2_YEAST : 95- 114: rmitg V--PWYSSRLkPAIssAlSkDG iytia PAU3_YEAST : 98- 117: rvitg V--PWYSTRLrPAIssAlSkDG iytai TIP1_YEAST : 91- 112: itkti VklPWYTTRLsSEIaaAlAsVS passe TIR1_YEAST : 95- 114: kmltm V--PWYSSRLePALksLnGdAS ssaap TIR2_YEAST : 95- 114: kmltm V--PWYSSRLlPELesLlGtST taass YB8K_YEAST : 95- 114: rmitg V--PWYSSRLkPAIssAlSkDG iytia YFC0_YEAST : 97- 116: rvitg V--PWYSSRLkPAIssAlSaDG iytia YHE6_YEAST : 95- 114: rmitg V--PWYSSRLkPAIssAlSkDG iytit YIB1_YEAST : 94- 115: ittam VqvPWYSSRLePEIiaAlQsAG isits YIB1_YEAST : 96- 115: tamvq V--PWYSSRLePEIiaAlQsAG isits YIR6_YEAST : 95- 114: rmitg V--PWYSSRLkPAIssAlSkDG iytia YIW1_YEAST : 98- 117: rvitg V--PWYSTRLrPAIssAlSkDG iytai YKW4_YEAST : 98- 117: rvitg V--PWYSTRLrPAIssAlSkDG iytia YOE2_YEAST : 98- 117: rvitg V--PWYSTRLrPAIssAlSkDG iytai E 5: 47.1162 14( 14) P-W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] Occurences: 14(14) PAU1_YEAST : 96- 114: mitgv PWYSTRLkPAIskAlSkDG iytia PAU2_YEAST : 96- 114: mitgv PWYSSRLkPAIssAlSkDG iytia PAU3_YEAST : 99- 117: vitgv PWYSTRLrPAIssAlSkDG iytai TIP1_YEAST : 94- 112: tivkl PWYTTRLsSEIaaAlAsVS passe TIR1_YEAST : 96- 114: mltmv PWYSSRLePALksLnGdAS ssaap TIR2_YEAST : 96- 114: mltmv PWYSSRLlPELesLlGtST taass YB8K_YEAST : 96- 114: mitgv PWYSSRLkPAIssAlSkDG iytia YFC0_YEAST : 98- 116: vitgv PWYSSRLkPAIssAlSaDG iytia YHE6_YEAST : 96- 114: mitgv PWYSSRLkPAIssAlSkDG iytit YIB1_YEAST : 97- 115: amvqv PWYSSRLePEIiaAlQsAG isits YIR6_YEAST : 96- 114: mitgv PWYSSRLkPAIssAlSkDG iytia YIW1_YEAST : 99- 117: vitgv PWYSTRLrPAIssAlSkDG iytai YKW4_YEAST : 99- 117: vitgv PWYSTRLrPAIssAlSkDG iytia YOE2_YEAST : 99- 117: vitgv PWYSTRLrPAIssAlSkDG iytai F 6: 42.9461 14( 14) W-Y-[ST]-[ST]-R-L-x-[PS]-[AE]-[IL]-x(2)-[AL]-x-[AGQS]-x-[ADSV]-[GST] Occurences: 14(14) PAU1_YEAST : 97- 114: itgvp WYSTRLkPAIskAlSkDG iytia PAU2_YEAST : 97- 114: itgvp WYSSRLkPAIssAlSkDG iytia PAU3_YEAST : 100- 117: itgvp WYSTRLrPAIssAlSkDG iytai TIP1_YEAST : 95- 112: ivklp WYTTRLsSEIaaAlAsVS passe TIR1_YEAST : 97- 114: ltmvp WYSSRLePALksLnGdAS ssaap TIR2_YEAST : 97- 114: ltmvp WYSSRLlPELesLlGtST taass YB8K_YEAST : 97- 114: itgvp WYSSRLkPAIssAlSkDG iytia YFC0_YEAST : 99- 116: itgvp WYSSRLkPAIssAlSaDG iytia YHE6_YEAST : 97- 114: itgvp WYSSRLkPAIssAlSkDG iytit YIB1_YEAST : 98- 115: mvqvp WYSSRLePEIiaAlQsAG isits YIR6_YEAST : 97- 114: itgvp WYSSRLkPAIssAlSkDG iytia YIW1_YEAST : 100- 117: itgvp WYSTRLrPAIssAlSkDG iytai YKW4_YEAST : 100- 117: itgvp WYSTRLrPAIssAlSkDG iytia YOE2_YEAST : 100- 117: itgvp WYSTRLrPAIssAlSkDG iytai G 7: 33.8823 19( 14) I-A-A-x(1,2)-A-[ASV]-[AIV]-x-[APT]-[AGQST]-x-[AEQST]-x-[ADNSTV]-x(3)-[ASTV]-x(3)-[DEPS] Occurences: 19(14) PAU1_YEAST : 7- 29: vklts IAAgvAAIaATaSaTttlTqsdE rvnlv PAU1_YEAST : 14- 35: agvaa IAAt-ASAtTTlTqSderVnlvE lgvyv PAU2_YEAST : 7- 29: vklts IAAgvAAIaATaSaTttlAqsdE rvnlv PAU2_YEAST : 14- 35: agvaa IAAt-ASAtTTlAqSderVnlvE lgvyv PAU3_YEAST : 7- 29: vklts IAAgvAAIaAGiAaApatTtlsP sderv TIP1_YEAST : 104- 126: rlsse IAAalASVsPAsSeAassSeaaS sskaa TIR1_YEAST : 12- 33: alfaa IAAl-ASAqTQdQiNelnVilnD vkshl TIR2_YEAST : 12- 33: allaa IAAl-ASAqTQeEiDelnVilnD vksnl YB8K_YEAST : 7- 29: vklts IAAgvAAIaATaSaTttlAqsdE rvnlv YB8K_YEAST : 14- 35: agvaa IAAt-ASAtTTlAqSderVnlvE lgvyv YFC0_YEAST : 7- 29: vklts IAAgvAAIaAGaSaAattTlsqS dervn YHE6_YEAST : 7- 29: vklts IAAgvAAIaATaSaTttlAqsdE rvnlv YHE6_YEAST : 14- 35: agvaa IAAt-ASAtTTlAqSderVnlvE lgvyv YIB1_YEAST : 6- 28: msftk IAAllAVAaAStQlVsaeVgqyE ivefd YIR6_YEAST : 7- 29: vklts IAAgvAAIaATaSaTttlAqsdE rvnlv YIR6_YEAST : 14- 35: agvaa IAAt-ASAtTTlAqSderVnlvE lgvyv YIW1_YEAST : 7- 29: vklts IAAgvAAIaAGvAaApatTtlsP sderv YKW4_YEAST : 7- 29: vklts IAAgvAAIaAGvAaApatTtlsP sderv YOE2_YEAST : 7- 29: vklts IAAgvAAIaAGvAaApatTtlsP sderv H 8: 33.4733 15( 14) L-x(2,4)-I-A-A-x(2,3)-A-x(2)-[AQS]-x(4)-[AEGT]-x-[ANPT]-[ASTV]-x(3)-[ADGS]-x(2)-[DRS] Occurences: 15(14) PAU1_YEAST : 4- 30: mvk Lts--IAAgv-AaiAatasAtTTltqSdeR vnlve PAU2_YEAST : 4- 30: mvk Lts--IAAgv-AaiAatasAtTTlaqSdeR vnlve PAU3_YEAST : 4- 31: mvk Lts--IAAgvaAiaAgiaaApATttlSpsD ervnl TIP1_YEAST : 100- 127: wyttr Lsse-IAAal-AsvSpassEaASsseAasS skaas TIR1_YEAST : 8- 36: ytkia Lfaa-IAAlasAqtQdqinElNVilnDvkS hlqey TIR2_YEAST : 8- 36: yikia Llaa-IAAlasAqtQeeidElNVilnDvkS nlqey TIR2_YEAST : 9- 36: ikial Laa--IAAlasAqtQeeidElNVilnDvkS nlqey YB8K_YEAST : 4- 30: mvk Lts--IAAgv-AaiAatasAtTTlaqSdeR vnlve YFC0_YEAST : 4- 30: mvk Lts--IAAgv-AaiAagasAaATttlSqsD ervnl YHE6_YEAST : 4- 30: mvk Lts--IAAgv-AaiAatasAtTTlaqSdeR vnlve YIB1_YEAST : 103- 132: wyssr LepeiIAAlqsAgiSitslGqTVsesGseS atass YIR6_YEAST : 4- 30: mvk Lts--IAAgv-AaiAatasAtTTlaqSdeR vnlve YIW1_YEAST : 4- 31: mvk Lts--IAAgvaAiaAgvaaApATttlSpsD ervnl YKW4_YEAST : 4- 31: mvk Lts--IAAgvaAiaAgvaaApATttlSpsD ervnl YOE2_YEAST : 4- 31: mvk Lts--IAAgvaAiaAgvaaApATttlSpsD ervnl I 9: 30.7055 16( 14) A-x-S-x-A-x(1,2)-S-x-[DS]-[AEG]-[AI]-x-[ST]-x(2)-[ANPS] Occurences: 16(14) PAU1_YEAST : 105- 120: trlkp AiSkAl-SkDGIyTiaN PAU2_YEAST : 105- 120: srlkp AiSsAl-SkDGIyTiaN PAU3_YEAST : 108- 123: trlrp AiSsAl-SkDGIyTaiP k TIP1_YEAST : 136- 152: assse AtSsAapSsSAApSssA apsss TIR1_YEAST : 113- 129: slngd AsSsAapSsSAApTssA apsss TIR2_YEAST : 148- 164: assse AtSsAvaSsSEAsSsaA tssav YB8K_YEAST : 105- 120: srlkp AiSsAl-SkDGIyTiaN YFC0_YEAST : 107- 122: srlkp AiSsAl-SaDGIyTiaN YHE6_YEAST : 105- 120: srlkp AiSsAl-SkDGIyTitN YIB1_YEAST : 149- 165: esssa AsSsAseSsSAAsSsaS esssa YIB1_YEAST : 160- 176: esssa AsSsAseSsSAAsSsaS esssa YIB1_YEAST : 171- 187: esssa AsSsAseSsSAAsSsaS eaaks YIR6_YEAST : 105- 120: srlkp AiSsAl-SkDGIyTiaN YIW1_YEAST : 108- 123: trlrp AiSsAl-SkDGIyTaiP k YKW4_YEAST : 108- 123: trlrp AiSsAl-SkDGIyTiaN YOE2_YEAST : 108- 123: trlrp AiSsAl-SkDGIyTaiP k J 10: 29.8243 16( 14) K-x-[AST]-S-x(1,3)-A-x(3,5)-A-x(2)-[AS]-[AGS]-x-A-x(2)-[PST] Occurences: 16(14) PAU1_YEAST : 3- 21: mv KlTSi--Aagv--AaiAAtAsaT ttltq PAU2_YEAST : 3- 21: mv KlTSi--Aagv--AaiAAtAsaT ttlaq PAU3_YEAST : 3- 22: mv KlTSia-Agva--AiaAGiAaaP atttl PAU3_YEAST : 3- 22: mv KlTSi--Aagva-AiaAGiAaaP atttl TIP1_YEAST : 129- 149: aasss KaASsseAtss--AapSSsAapS ssaap TIP1_YEAST : 129- 150: aasss KaASsseAtssa-ApsSSaApsS saaps TIR1_YEAST : 149- 169: sssea KsSSa--ApssseAksSSaApsS seaks TIR1_YEAST : 161- 181: sssea KsSSa--ApssseAksSSaApsS seaks TIR1_YEAST : 173- 193: sssea KsSSa--ApssseAksSSaApsS teaki TIR2_YEAST : 185- 205: vasst KaASstkAsss--AvsSAvAssT kasai YB8K_YEAST : 3- 21: mv KlTSi--Aagv--AaiAAtAsaT ttlaq YFC0_YEAST : 3- 24: mv KlTSia-AgvaaiAagASaAatT tlsqs YHE6_YEAST : 3- 21: mv KlTSi--Aagv--AaiAAtAsaT ttlaq YIB1_YEAST : 214- 232: ssass KaSSa--Asss--AkaSSsAekS tnsss YIR6_YEAST : 3- 21: mv KlTSi--Aagv--AaiAAtAsaT ttlaq YIW1_YEAST : 3- 22: mv KlTSia-Agva--AiaAGvAaaP atttl YIW1_YEAST : 3- 22: mv KlTSi--Aagva-AiaAGvAaaP atttl YKW4_YEAST : 3- 22: mv KlTSia-Agva--AiaAGvAaaP atttl YKW4_YEAST : 3- 22: mv KlTSi--Aagva-AiaAGvAaaP atttl YOE2_YEAST : 3- 22: mv KlTSia-Agva--AiaAGvAaaP atttl YOE2_YEAST : 3- 22: mv KlTSi--Aagva-AiaAGvAaaP atttl K 11: 28.5690 14( 14) A-[GV]-V-x(0,1)-A-x(0,1)-A-[AI]-A-x(2)-[AILV] Occurences: 14(14) PAU1_YEAST : 9- 18: ltsia AGV-A-AIAatA sattt PAU2_YEAST : 9- 18: ltsia AGV-A-AIAatA sattt PAU3_YEAST : 9- 18: ltsia AGV-A-AIAagI aaapa TIP1_YEAST : 200- 210: aasfg AVV-AgAAAllL TIR1_YEAST : 244- 254: fvgmg AGVvA-AAAmlL TIR2_YEAST : 241- 251: vigmg AGVmA-AAAmlL YB8K_YEAST : 9- 18: ltsia AGV-A-AIAatA sattt YFC0_YEAST : 9- 18: ltsia AGV-A-AIAagA saaat YHE6_YEAST : 9- 18: ltsia AGV-A-AIAatA sattt YIB1_YEAST : 255- 265: mgffs AGVgA-AIAgaA amll YIR6_YEAST : 9- 18: ltsia AGV-A-AIAatA sattt YIW1_YEAST : 9- 18: ltsia AGV-A-AIAagV aaapa YKW4_YEAST : 9- 18: ltsia AGV-A-AIAagV aaapa YOE2_YEAST : 9- 18: ltsia AGV-A-AIAagV aaapa L 12: 28.4637 14( 14) A-x(1,2)-S-x-A-[ALPV]-S-x-[ADS]-[AGSV]-x(2)-[AST]-x(2)-[ANP] Occurences: 14(14) PAU1_YEAST : 105- 120: trlkp Ai-SkALSkDGiyTiaN PAU2_YEAST : 105- 120: srlkp Ai-SsALSkDGiyTiaN PAU3_YEAST : 108- 123: trlrp Ai-SsALSkDGiyTaiP k TIP1_YEAST : 136- 152: assse AtsSaAPSsSAapSssA apsss TIR1_YEAST : 113- 129: slngd AssSaAPSsSAapTssA apsss TIR2_YEAST : 192- 207: asstk As-SsAVSsAVasStkA saisq YB8K_YEAST : 105- 120: srlkp Ai-SsALSkDGiyTiaN YFC0_YEAST : 107- 122: srlkp Ai-SsALSaDGiyTiaN YHE6_YEAST : 105- 120: srlkp Ai-SsALSkDGiyTitN YIB1_YEAST : 203- 218: ssgss Aa-SsAASsASskAssA asssa YIR6_YEAST : 105- 120: srlkp Ai-SsALSkDGiyTiaN YIW1_YEAST : 108- 123: trlrp Ai-SsALSkDGiyTaiP k YKW4_YEAST : 108- 123: trlrp Ai-SsALSkDGiyTiaN YOE2_YEAST : 108- 123: trlrp Ai-SsALSkDGiyTaiP k M 13: 26.9452 24( 14) A-x(0,2)-G-x(0,1)-V-x-A-[AGI]-[AIP]-A-x-[AILV] Occurences: 24(14) PAU1_YEAST : 8- 18: kltsi Aa-G-VaAIAAtA sattt PAU1_YEAST : 9- 18: ltsia A--G-VaAIAAtA sattt PAU2_YEAST : 8- 18: kltsi Aa-G-VaAIAAtA sattt PAU2_YEAST : 9- 18: ltsia A--G-VaAIAAtA sattt PAU3_YEAST : 8- 18: kltsi Aa-G-VaAIAAgI aaapa PAU3_YEAST : 9- 18: ltsia A--G-VaAIAAgI aaapa TIP1_YEAST : 196- 208: vnaga AsfGaVvAGAAaL ll TIR1_YEAST : 244- 253: fvgmg A--G-VvAAAAmL l TIR2_YEAST : 241- 250: vigmg A--G-VmAAAAmL l YB8K_YEAST : 8- 18: kltsi Aa-G-VaAIAAtA sattt YB8K_YEAST : 9- 18: ltsia A--G-VaAIAAtA sattt YFC0_YEAST : 8- 18: kltsi Aa-G-VaAIAAgA saaat YFC0_YEAST : 9- 18: ltsia A--G-VaAIAAgA saaat YHE6_YEAST : 8- 18: kltsi Aa-G-VaAIAAtA sattt YHE6_YEAST : 9- 18: ltsia A--G-VaAIAAtA sattt YIB1_YEAST : 255- 264: mgffs A--G-VgAAIAgA aamll YIR6_YEAST : 8- 18: kltsi Aa-G-VaAIAAtA sattt YIR6_YEAST : 9- 18: ltsia A--G-VaAIAAtA sattt YIW1_YEAST : 8- 18: kltsi Aa-G-VaAIAAgV aaapa YIW1_YEAST : 9- 18: ltsia A--G-VaAIAAgV aaapa YKW4_YEAST : 8- 18: kltsi Aa-G-VaAIAAgV aaapa YKW4_YEAST : 9- 18: ltsia A--G-VaAIAAgV aaapa YOE2_YEAST : 8- 18: kltsi Aa-G-VaAIAAgV aaapa YOE2_YEAST : 9- 18: ltsia A--G-VaAIAAgV aaapa N 14: 25.3201 14( 14) A-G-x(0,2)-V-x(0,1)-A-[AGI]-[AI]-A Occurences: 14(14) PAU1_YEAST : 9- 15: ltsia AG--V-AAIA atasa PAU1_YEAST : 9- 16: ltsia AG--VaAIAA tasat PAU2_YEAST : 9- 15: ltsia AG--V-AAIA atasa PAU2_YEAST : 9- 16: ltsia AG--VaAIAA tasat PAU3_YEAST : 9- 15: ltsia AG--V-AAIA agiaa PAU3_YEAST : 9- 16: ltsia AG--VaAIAA giaaa TIP1_YEAST : 187- 196: etasn AGqrVnAGAA sfgav TIR1_YEAST : 244- 251: fvgmg AGv-V-AAAA mll TIR1_YEAST : 244- 251: fvgmg AG--VvAAAA mll TIR2_YEAST : 241- 248: vigmg AG--VmAAAA mll YB8K_YEAST : 9- 15: ltsia AG--V-AAIA atasa YB8K_YEAST : 9- 16: ltsia AG--VaAIAA tasat YFC0_YEAST : 9- 15: ltsia AG--V-AAIA agasa YFC0_YEAST : 9- 16: ltsia AG--VaAIAA gasaa YHE6_YEAST : 9- 15: ltsia AG--V-AAIA atasa YHE6_YEAST : 9- 16: ltsia AG--VaAIAA tasat YIB1_YEAST : 255- 262: mgffs AG--VgAAIA gaaam YIR6_YEAST : 9- 15: ltsia AG--V-AAIA atasa YIR6_YEAST : 9- 16: ltsia AG--VaAIAA tasat YIW1_YEAST : 9- 15: ltsia AG--V-AAIA agvaa YIW1_YEAST : 9- 16: ltsia AG--VaAIAA gvaaa YKW4_YEAST : 9- 15: ltsia AG--V-AAIA agvaa YKW4_YEAST : 9- 16: ltsia AG--VaAIAA gvaaa YOE2_YEAST : 9- 15: ltsia AG--V-AAIA agvaa YOE2_YEAST : 9- 16: ltsia AG--VaAIAA gvaaa O 15: 24.7060 30( 14) A-x(0,1)-G-x(0,2)-V-x-A-[AGI]-[AIP]-A Occurences: 30(14) PAU1_YEAST : 8- 16: kltsi AaG--VaAIAA tasat PAU1_YEAST : 9- 16: ltsia A-G--VaAIAA tasat PAU2_YEAST : 8- 16: kltsi AaG--VaAIAA tasat PAU2_YEAST : 9- 16: ltsia A-G--VaAIAA tasat PAU3_YEAST : 8- 16: kltsi AaG--VaAIAA giaaa PAU3_YEAST : 9- 16: ltsia A-G--VaAIAA giaaa TIP1_YEAST : 187- 196: etasn A-GqrVnAGAA sfgav TIR1_YEAST : 244- 251: fvgmg A-G--VvAAAA mll TIR2_YEAST : 241- 248: vigmg A-G--VmAAAA mll YB8K_YEAST : 8- 16: kltsi AaG--VaAIAA tasat YB8K_YEAST : 9- 16: ltsia A-G--VaAIAA tasat YFC0_YEAST : 8- 16: kltsi AaG--VaAIAA gasaa YFC0_YEAST : 9- 16: ltsia A-G--VaAIAA gasaa YHE6_YEAST : 8- 16: kltsi AaG--VaAIAA tasat YHE6_YEAST : 9- 16: ltsia A-G--VaAIAA tasat YIB1_YEAST : 255- 262: mgffs A-G--VgAAIA gaaam YIR6_YEAST : 8- 16: kltsi AaG--VaAIAA tasat YIR6_YEAST : 9- 16: ltsia A-G--VaAIAA tasat YIW1_YEAST : 8- 16: kltsi AaG--VaAIAA gvaaa YIW1_YEAST : 9- 16: ltsia A-G--VaAIAA gvaaa YIW1_YEAST : 15- 23: gvaai AaG--VaAAPA tttls YIW1_YEAST : 16- 23: vaaia A-G--VaAAPA tttls YKW4_YEAST : 8- 16: kltsi AaG--VaAIAA gvaaa YKW4_YEAST : 9- 16: ltsia A-G--VaAIAA gvaaa YKW4_YEAST : 15- 23: gvaai AaG--VaAAPA tttls YKW4_YEAST : 16- 23: vaaia A-G--VaAAPA tttls YOE2_YEAST : 8- 16: kltsi AaG--VaAIAA gvaaa YOE2_YEAST : 9- 16: ltsia A-G--VaAIAA gvaaa YOE2_YEAST : 15- 23: gvaai AaG--VaAAPA tttls YOE2_YEAST : 16- 23: vaaia A-G--VaAAPA tttls P 16: 24.6493 20( 14) A-x(2)-[AGV]-A-x(1,2)-A-x(0,1)-A-[APST]-A Occurences: 20(14) PAU1_YEAST : 8- 18: kltsi AagVAaiA-ATA sattt PAU1_YEAST : 9- 18: ltsia AgvAAi-A-ATA sattt PAU1_YEAST : 9- 20: ltsia AgvAAiaAtASA tttlt PAU2_YEAST : 8- 18: kltsi AagVAaiA-ATA sattt PAU2_YEAST : 9- 18: ltsia AgvAAi-A-ATA sattt PAU2_YEAST : 9- 20: ltsia AgvAAiaAtASA tttla PAU3_YEAST : 12- 23: iaagv AaiAAgiAaAPA tttls TIP1_YEAST : 196- 207: vnaga AsfGAvvAgAAA lll TIR1_YEAST : 7- 18: aytki AlfAAiaAlASA qtqdq TIR2_YEAST : 7- 18: ayiki AllAAiaAlASA qtqee YB8K_YEAST : 8- 18: kltsi AagVAaiA-ATA sattt YB8K_YEAST : 9- 18: ltsia AgvAAi-A-ATA sattt YB8K_YEAST : 9- 20: ltsia AgvAAiaAtASA tttla YFC0_YEAST : 9- 20: ltsia AgvAAiaAgASA aattt YFC0_YEAST : 12- 22: iaagv AaiAAg-AsAAA tttls YHE6_YEAST : 8- 18: kltsi AagVAaiA-ATA sattt YHE6_YEAST : 9- 18: ltsia AgvAAi-A-ATA sattt YHE6_YEAST : 9- 20: ltsia AgvAAiaAtASA tttla YIB1_YEAST : 255- 266: mgffs AgvGAaiAgAAA mll YIR6_YEAST : 8- 18: kltsi AagVAaiA-ATA sattt YIR6_YEAST : 9- 18: ltsia AgvAAi-A-ATA sattt YIR6_YEAST : 9- 20: ltsia AgvAAiaAtASA tttla YIW1_YEAST : 12- 23: iaagv AaiAAgvAaAPA tttls YKW4_YEAST : 12- 23: iaagv AaiAAgvAaAPA tttls YOE2_YEAST : 12- 23: iaagv AaiAAgvAaAPA tttls Q 17: 24.0969 14( 14) L-x-[EPS]-x-I-x(2)-A-x(1,2)-S-x-[DGS]-[GIP] Occurences: 14(14) PAU1_YEAST : 102- 114: wystr LkPaIskAl-SkDG iytia PAU2_YEAST : 102- 114: wyssr LkPaIssAl-SkDG iytia PAU3_YEAST : 105- 117: wystr LrPaIssAl-SkDG iytai TIP1_YEAST : 100- 113: wyttr LsSeIaaAlaSvSP assea TIR1_YEAST : 38- 51: dvksh LqEyIslAsdSsSG fslss TIR2_YEAST : 38- 51: dvksn LqEyIslAedSsSG fslss YB8K_YEAST : 102- 114: wyssr LkPaIssAl-SkDG iytia YFC0_YEAST : 104- 116: wyssr LkPaIssAl-SaDG iytia YHE6_YEAST : 102- 114: wyssr LkPaIssAl-SkDG iytit YIB1_YEAST : 103- 116: wyssr LePeIiaAlqSaGI sitsl YIR6_YEAST : 102- 114: wyssr LkPaIssAl-SkDG iytia YIW1_YEAST : 105- 117: wystr LrPaIssAl-SkDG iytai YKW4_YEAST : 105- 117: wystr LrPaIssAl-SkDG iytia YOE2_YEAST : 105- 117: wystr LrPaIssAl-SkDG iytai R 18: 19.3503 14( 14) A-I-A-x(0,2)-A-x(1,2)-A Occurences: 14(14) PAU1_YEAST : 13- 18: aagva AIA--At-A sattt PAU1_YEAST : 13- 20: aagva AIAatAs-A tttlt PAU2_YEAST : 13- 18: aagva AIA--At-A sattt PAU2_YEAST : 13- 20: aagva AIAatAs-A tttla PAU3_YEAST : 13- 19: aagva AIA--AgiA aapat TIP1_YEAST : 12- 19: afvls AIAslAv-A dtsaa TIR1_YEAST : 11- 16: ialfa AIA--Al-A saqtq TIR1_YEAST : 11- 18: ialfa AIAalAs-A qtqdq TIR2_YEAST : 11- 16: ialla AIA--Al-A saqtq TIR2_YEAST : 11- 18: ialla AIAalAs-A qtqee YB8K_YEAST : 13- 18: aagva AIA--At-A sattt YB8K_YEAST : 13- 20: aagva AIAatAs-A tttla YFC0_YEAST : 13- 18: aagva AIA--Ag-A saaat YFC0_YEAST : 13- 20: aagva AIAagAs-A aattt YFC0_YEAST : 13- 21: aagva AIAagAsaA atttl YHE6_YEAST : 13- 18: aagva AIA--At-A sattt YHE6_YEAST : 13- 20: aagva AIAatAs-A tttla YIB1_YEAST : 260- 266: agvga AIAg-Aa-A mll YIR6_YEAST : 13- 18: aagva AIA--At-A sattt YIR6_YEAST : 13- 20: aagva AIAatAs-A tttla YIW1_YEAST : 13- 19: aagva AIA--AgvA aapat YKW4_YEAST : 13- 19: aagva AIA--AgvA aapat YOE2_YEAST : 13- 19: aagva AIA--AgvA aapat S 19: 18.8678 17( 14) A-[GV]-V-x(0,1)-A-x(0,1)-A Occurences: 17(14) PAU1_YEAST : 9- 13: ltsia AGV-A-A iaata PAU2_YEAST : 9- 13: ltsia AGV-A-A iaata PAU3_YEAST : 9- 13: ltsia AGV-A-A iaagi TIP1_YEAST : 200- 205: aasfg AVV-AgA aalll TIR1_YEAST : 244- 249: fvgmg AGVvA-A aamll TIR2_YEAST : 241- 246: vigmg AGVmA-A aamll YB8K_YEAST : 9- 13: ltsia AGV-A-A iaata YFC0_YEAST : 9- 13: ltsia AGV-A-A iaaga YHE6_YEAST : 9- 13: ltsia AGV-A-A iaata YIB1_YEAST : 255- 260: mgffs AGVgA-A iagaa YIR6_YEAST : 9- 13: ltsia AGV-A-A iaata YIW1_YEAST : 9- 13: ltsia AGV-A-A iaagv YIW1_YEAST : 16- 21: vaaia AGVaA-A pattt YIW1_YEAST : 16- 21: vaaia AGV-AaA pattt YKW4_YEAST : 9- 13: ltsia AGV-A-A iaagv YKW4_YEAST : 16- 21: vaaia AGVaA-A pattt YKW4_YEAST : 16- 21: vaaia AGV-AaA pattt YOE2_YEAST : 9- 13: ltsia AGV-A-A iaagv YOE2_YEAST : 16- 21: vaaia AGVaA-A pattt YOE2_YEAST : 16- 21: vaaia AGV-AaA pattt T 20: 18.3892 14( 14) I-x(2)-A-L-x(0,1)-S-x-[DGST] Occurences: 14(14) PAU1_YEAST : 106- 113: rlkpa IskAL-SkD giyti PAU2_YEAST : 106- 113: rlkpa IssAL-SkD giyti PAU3_YEAST : 109- 116: rlrpa IssAL-SkD giyta TIP1_YEAST : 104- 112: rlsse IaaALaSvS passe TIR1_YEAST : 64- 72: agvld IgmALaSaT ddsyt TIR2_YEAST : 64- 72: sgvld IglALaSaT ddsyt YB8K_YEAST : 106- 113: rlkpa IssAL-SkD giyti YFC0_YEAST : 108- 115: rlkpa IssAL-SaD giyti YHE6_YEAST : 106- 113: rlkpa IssAL-SkD giyti YIB1_YEAST : 107- 115: rlepe IiaALqSaG isits YIR6_YEAST : 106- 113: rlkpa IssAL-SkD giyti YIW1_YEAST : 109- 116: rlrpa IssAL-SkD giyta YKW4_YEAST : 109- 116: rlrpa IssAL-SkD giyti YOE2_YEAST : 109- 116: rlrpa IssAL-SkD giyta Number of patterns evaluated by Pratt:1527 Total running time: 1 seconds