------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file SQUALEN_PHYTOEN_SYN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SQUALEN_PHYTOEN_SYN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CRTB_ERWHE 309 CRTB_ERWUR 296 CRTB_RHOCA 339 CRTB_SYNP7 307 CRTB_SYNY3 337 CRTB_THETH 289 FDFT_HUMAN 417 FDFT_RAT 416 FDFT_SCHPO 460 FDFT_YEAST 444 PSY1_LYCES 412 PSY2_LYCES 310 PSY_ARATH 423 PSY_CAPAN 419 PSY_NEUCR 602 Pratt run started at Thu Feb 6 21:14:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 32.3604 15( 15) G-x(3)-Q-x(2)-N-I-x-R-D-x(3)-D-x(2,4)-R 2: 28.1904 15( 15) Q-x(2)-N-I-x-R-D-x(3)-D-x(2,4)-R 3: 25.0203 15( 15) I-x-R-D-x(3)-D-x(4)-R-x(3)-P 4: 24.0203 15( 15) N-I-x-R-D-x(3)-D-x(2,4)-R 5: 20.8503 15( 15) Y-x(3)-V-A-x(2)-V-G 6: 19.8503 15( 15) I-x-R-D-x(3)-D-x(2,4)-R 7: 19.8503 24( 15) Y-x(1,3)-V-A-x(2)-V-G 8: 16.6802 15( 15) V-A-x(2)-V-G 9: 16.6802 15( 15) Y-x(3)-R-x(2)-D-x(3)-D 10: 15.6802 15( 15) D-x(1,3)-D-x(4)-R-x(3)-P 11: 15.6802 15( 15) R-D-x(3)-D-x(2,4)-R 12: 12.5102 17( 15) Y-x(4)-A-x(3)-G 13: 12.5102 17( 15) D-x(4)-R-x(3)-P 14: 12.5102 16( 15) A-x(2)-V-G 15: 12.5102 17( 15) R-x(2)-D-x(3)-D 16: 12.0102 17( 15) R-x(4)-D-x(3,4)-R 17: 12.0102 18( 15) R-x(4,5)-D-x(4)-R 18: 12.0102 19( 15) R-x(3,4)-D-x(4)-R 19: 12.0102 16( 15) Q-x(3)-I-x(1,2)-D 20: 12.0102 17( 15) A-x(1,2)-Q-x(3)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 47.1661 15( 15) G-x(3)-Q-x-[STV]-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] B 2: 44.5774 15( 15) G-x(3)-Q-x(2)-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] C 3: 42.9960 15( 15) Q-x-[STV]-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] D 4: 39.3271 15( 15) Q-x-[STV]-N-I-x(1,2)-D-x(3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] E 5: 36.2373 15( 15) N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] F 6: 33.0684 15( 15) I-x-R-D-x(3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] G 7: 32.0672 15( 15) I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] H 8: 26.7026 15( 15) Y-[ACS]-x(2)-V-A-[AG]-x-V-G I 9: 25.7226 15( 15) R-D-x(3)-D-x(3,4)-R-x-[FY]-x-P-x-[DEST] J 10: 25.2226 15( 15) R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] K 11: 24.2902 15( 15) R-x(4)-D-x(3)-[DGNV]-R-x-[FY]-x-P-x-[DEST] L 12: 24.2283 15( 15) R-x(3,4)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] M 13: 23.7283 15( 15) D-x(1,3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] N 14: 23.0235 15( 15) A-x(1,2)-Q-x(2)-[AN]-I-[AL]-x(2)-[AIV]-[AGILV] O 15: 23.0204 24( 15) Y-x(1,3)-V-A-[AG]-x-V-G P 16: 21.9225 15( 15) Y-x(3)-R-x(2)-D-[DET]-x(2)-D-[DEG] Q 17: 20.5582 15( 15) D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] R 18: 19.8503 15( 15) V-A-[AG]-x-V-G S 19: 17.7524 15( 15) R-x(2)-D-[DET]-x(2)-D-[DEG] T 20: 15.6803 15( 15) A-[AG]-x-V-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 47.1661 15( 15) G-x(3)-Q-x-[STV]-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 165- 191: racdl GlafQlTNIARDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 152- 178: racdl GlafQlTNIARDivdDahagRcYlPaS wlehe CRTB_RHOCA : 157- 183: racdl GlamQmSNIARDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 181- 207: ealal GianQlTNILRDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 210- 236: eaial GvanQlTNILRDvgeDvergRiYlPlE dlerf CRTB_THETH : 156- 182: ravkl GqamQlTNILRDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 208- 234: ransm GlflQkTNIIRDyleDqqggReFwPqE vwsry FDFT_RAT : 208- 234: cansm GlflQkTNIIRDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 212- 238: isnsl GlflQkVNIIRDyreDfddnRhFwPrE iwsky FDFT_YEAST : 215- 241: lyesm GlflQkTNIIRDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 276- 302: aalal GianQlTNILRDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 172- 198: aalal GianQlTNILRDvgeDarrgRvYlPqD elaqa PSY_ARATH : 288- 314: aalal GianQlTNILRDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 288- 314: aalal GianQlTNILRDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 473- 499: aacrm GialQyVNIARDivvDarigRvYlPtT wlkke B 2: 44.5774 15( 15) G-x(3)-Q-x(2)-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 165- 191: racdl GlafQltNIARDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 152- 178: racdl GlafQltNIARDivdDahagRcYlPaS wlehe CRTB_RHOCA : 157- 183: racdl GlamQmsNIARDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 181- 207: ealal GianQltNILRDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 210- 236: eaial GvanQltNILRDvgeDvergRiYlPlE dlerf CRTB_THETH : 156- 182: ravkl GqamQltNILRDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 208- 234: ransm GlflQktNIIRDyleDqqggReFwPqE vwsry FDFT_RAT : 208- 234: cansm GlflQktNIIRDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 212- 238: isnsl GlflQkvNIIRDyreDfddnRhFwPrE iwsky FDFT_YEAST : 215- 241: lyesm GlflQktNIIRDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 276- 302: aalal GianQltNILRDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 172- 198: aalal GianQltNILRDvgeDarrgRvYlPqD elaqa PSY_ARATH : 288- 314: aalal GianQltNILRDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 288- 314: aalal GianQltNILRDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 473- 499: aacrm GialQyvNIARDivvDarigRvYlPtT wlkke C 3: 42.9960 15( 15) Q-x-[STV]-N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 169- 191: lglaf QlTNIARDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 156- 178: lglaf QlTNIARDivdDahagRcYlPaS wlehe CRTB_RHOCA : 161- 183: lglam QmSNIARDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 185- 207: lgian QlTNILRDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 214- 236: lgvan QlTNILRDvgeDvergRiYlPlE dlerf CRTB_THETH : 160- 182: lgqam QlTNILRDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 212- 234: mglfl QkTNIIRDyleDqqggReFwPqE vwsry FDFT_RAT : 212- 234: mglfl QkTNIIRDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 216- 238: lglfl QkVNIIRDyreDfddnRhFwPrE iwsky FDFT_YEAST : 219- 241: mglfl QkTNIIRDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 280- 302: lgian QlTNILRDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 176- 198: lgian QlTNILRDvgeDarrgRvYlPqD elaqa PSY_ARATH : 292- 314: lgian QlTNILRDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 292- 314: lgian QlTNILRDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 477- 499: mgial QyVNIARDivvDarigRvYlPtT wlkke D 4: 39.3271 15( 15) Q-x-[STV]-N-I-x(1,2)-D-x(3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 169- 191: lglaf QlTNIarDiidDaaiDRcYlPaE wlqda CRTB_ERWUR : 156- 178: lglaf QlTNIarDivdDahaGRcYlPaS wlehe CRTB_RHOCA : 161- 183: lglam QmSNIarDvgeDaraGRlFlPtD wmvee CRTB_SYNP7 : 185- 207: lgian QlTNIlrDvgeDarrGRiYlPqE elaqf CRTB_SYNY3 : 214- 236: lgvan QlTNIlrDvgeDverGRiYlPlE dlerf CRTB_THETH : 160- 182: lgqam QlTNIlrDvgeDlerDRvYlPlD llrah FDFT_HUMAN : 212- 234: mglfl QkTNIirDyleDqqgGReFwPqE vwsry FDFT_RAT : 212- 234: mglfl QkTNIirDyleDqqeGRqFwPqE vwgky FDFT_SCHPO : 216- 238: lglfl QkVNIirDyreDfddNRhFwPrE iwsky FDFT_YEAST : 219- 241: mglfl QkTNIirDyneDlvdGRsFwPkE iwsqy PSY1_LYCES : 280- 302: lgian QlTNIlrDvgeDarrGRvYlPqD elaqa PSY2_LYCES : 176- 198: lgian QlTNIlrDvgeDarrGRvYlPqD elaqa PSY_ARATH : 292- 314: lgian QlTNIlrDvgeDarrGRvYlPqD elaqa PSY_CAPAN : 292- 314: lgian QlTNIlrDvgeDarrGRvYlPqD elaqa PSY_NEUCR : 477- 499: mgial QyVNIarDivvDariGRvYlPtT wlkke E 5: 36.2373 15( 15) N-I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 172- 191: afqlt NIARDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 159- 178: afqlt NIARDivdDahagRcYlPaS wlehe CRTB_RHOCA : 164- 183: amqms NIARDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 188- 207: anqlt NILRDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 217- 236: anqlt NILRDvgeDvergRiYlPlE dlerf CRTB_THETH : 163- 182: amqlt NILRDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 215- 234: flqkt NIIRDyleDqqggReFwPqE vwsry FDFT_RAT : 215- 234: flqkt NIIRDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 219- 238: flqkv NIIRDyreDfddnRhFwPrE iwsky FDFT_YEAST : 222- 241: flqkt NIIRDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 283- 302: anqlt NILRDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 179- 198: anqlt NILRDvgeDarrgRvYlPqD elaqa PSY_ARATH : 295- 314: anqlt NILRDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 295- 314: anqlt NILRDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 480- 499: alqyv NIARDivvDarigRvYlPtT wlkke F 6: 33.0684 15( 15) I-x-R-D-x(3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 173- 191: fqltn IaRDiidDaaiDRcYlPaE wlqda CRTB_ERWUR : 160- 178: fqltn IaRDivdDahaGRcYlPaS wlehe CRTB_RHOCA : 165- 183: mqmsn IaRDvgeDaraGRlFlPtD wmvee CRTB_SYNP7 : 189- 207: nqltn IlRDvgeDarrGRiYlPqE elaqf CRTB_SYNY3 : 218- 236: nqltn IlRDvgeDverGRiYlPlE dlerf CRTB_THETH : 164- 182: mqltn IlRDvgeDlerDRvYlPlD llrah FDFT_HUMAN : 216- 234: lqktn IiRDyleDqqgGReFwPqE vwsry FDFT_RAT : 216- 234: lqktn IiRDyleDqqeGRqFwPqE vwgky FDFT_SCHPO : 220- 238: lqkvn IiRDyreDfddNRhFwPrE iwsky FDFT_YEAST : 223- 241: lqktn IiRDyneDlvdGRsFwPkE iwsqy PSY1_LYCES : 284- 302: nqltn IlRDvgeDarrGRvYlPqD elaqa PSY2_LYCES : 180- 198: nqltn IlRDvgeDarrGRvYlPqD elaqa PSY_ARATH : 296- 314: nqltn IlRDvgeDarrGRvYlPqD elaqa PSY_CAPAN : 296- 314: nqltn IlRDvgeDarrGRvYlPqD elaqa PSY_NEUCR : 481- 499: lqyvn IaRDivvDariGRvYlPtT wlkke G 7: 32.0672 15( 15) I-[AIL]-R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 173- 191: fqltn IARDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 160- 178: fqltn IARDivdDahagRcYlPaS wlehe CRTB_RHOCA : 165- 183: mqmsn IARDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 189- 207: nqltn ILRDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 218- 236: nqltn ILRDvgeDvergRiYlPlE dlerf CRTB_THETH : 164- 182: mqltn ILRDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 216- 234: lqktn IIRDyleDqqggReFwPqE vwsry FDFT_RAT : 216- 234: lqktn IIRDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 220- 238: lqkvn IIRDyreDfddnRhFwPrE iwsky FDFT_YEAST : 223- 241: lqktn IIRDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 284- 302: nqltn ILRDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 180- 198: nqltn ILRDvgeDarrgRvYlPqD elaqa PSY_ARATH : 296- 314: nqltn ILRDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 296- 314: nqltn ILRDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 481- 499: lqyvn IARDivvDarigRvYlPtT wlkke H 8: 26.7026 15( 15) Y-[ACS]-x(2)-V-A-[AG]-x-V-G Occurences: 15(15) CRTB_ERWHE : 134- 143: edtlr YCyhVAGvVG lmmar CRTB_ERWUR : 121- 130: ddtlr YCyhVAGvVG lmmaq CRTB_RHOCA : 126- 135: sdvqa YSarVAAaVG ammcv CRTB_SYNP7 : 138- 147: edlyt YCyrVAGtVG lmsqp CRTB_SYNY3 : 167- 176: eeldl YCyrVAGtVG lmssa CRTB_THETH : 126- 135: aellr YCyqVAGtVG rmmap FDFT_HUMAN : 171- 180: qewdk YChyVAGlVG iglsr FDFT_RAT : 171- 180: qdwdk YChyVAGlVG iglsr FDFT_SCHPO : 175- 184: edfnk YChyVAGlVG iglsr FDFT_YEAST : 178- 187: hdydv YChyVAGlVG dgltr PSY1_LYCES : 239- 248: delyl YCyyVAGtVG lmsvp PSY2_LYCES : 135- 144: delyl YCyyVAGtVG lmsvp PSY_ARATH : 251- 260: ddlyl YCyyVAGtVG lmsvp PSY_CAPAN : 251- 260: delyl YCyyVAGtVG lmsvp PSY_NEUCR : 433- 442: kdlen YAiyVAGtVG elcia I 9: 25.7226 15( 15) R-D-x(3)-D-x(3,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 175- 191: ltnia RDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 162- 178: ltnia RDivdDahagRcYlPaS wlehe CRTB_RHOCA : 167- 183: msnia RDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 191- 207: ltnil RDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 220- 236: ltnil RDvgeDvergRiYlPlE dlerf CRTB_THETH : 166- 182: ltnil RDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 218- 234: ktnii RDyleDqqggReFwPqE vwsry FDFT_RAT : 218- 234: ktnii RDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 222- 238: kvnii RDyreDfddnRhFwPrE iwsky FDFT_YEAST : 225- 241: ktnii RDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 286- 302: ltnil RDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 182- 198: ltnil RDvgeDarrgRvYlPqD elaqa PSY_ARATH : 298- 314: ltnil RDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 298- 314: ltnil RDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 483- 499: yvnia RDivvDarigRvYlPtT wlkke J 10: 25.2226 15( 15) R-D-x(3)-D-x(2,4)-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 175- 191: ltnia RDiidDaaidRcYlPaE wlqda CRTB_ERWUR : 162- 178: ltnia RDivdDahagRcYlPaS wlehe CRTB_RHOCA : 167- 183: msnia RDvgeDaragRlFlPtD wmvee CRTB_SYNP7 : 191- 207: ltnil RDvgeDarrgRiYlPqE elaqf CRTB_SYNY3 : 220- 236: ltnil RDvgeDvergRiYlPlE dlerf CRTB_THETH : 166- 182: ltnil RDvgeDlerdRvYlPlD llrah FDFT_HUMAN : 218- 234: ktnii RDyleDqqggReFwPqE vwsry FDFT_RAT : 218- 234: ktnii RDyleDqqegRqFwPqE vwgky FDFT_SCHPO : 222- 238: kvnii RDyreDfddnRhFwPrE iwsky FDFT_YEAST : 225- 241: ktnii RDyneDlvdgRsFwPkE iwsqy PSY1_LYCES : 286- 302: ltnil RDvgeDarrgRvYlPqD elaqa PSY2_LYCES : 182- 198: ltnil RDvgeDarrgRvYlPqD elaqa PSY_ARATH : 298- 314: ltnil RDvgeDarrgRvYlPqD elaqa PSY_CAPAN : 298- 314: ltnil RDvgeDarrgRvYlPqD elaqa PSY_NEUCR : 483- 499: yvnia RDivvDarigRvYlPtT wlkke K 11: 24.2902 15( 15) R-x(4)-D-x(3)-[DGNV]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 175- 191: ltnia RdiidDaaiDRcYlPaE wlqda CRTB_ERWUR : 162- 178: ltnia RdivdDahaGRcYlPaS wlehe CRTB_RHOCA : 167- 183: msnia RdvgeDaraGRlFlPtD wmvee CRTB_SYNP7 : 191- 207: ltnil RdvgeDarrGRiYlPqE elaqf CRTB_SYNY3 : 220- 236: ltnil RdvgeDverGRiYlPlE dlerf CRTB_THETH : 166- 182: ltnil RdvgeDlerDRvYlPlD llrah FDFT_HUMAN : 218- 234: ktnii RdyleDqqgGReFwPqE vwsry FDFT_RAT : 218- 234: ktnii RdyleDqqeGRqFwPqE vwgky FDFT_SCHPO : 222- 238: kvnii RdyreDfddNRhFwPrE iwsky FDFT_YEAST : 225- 241: ktnii RdyneDlvdGRsFwPkE iwsqy PSY1_LYCES : 286- 302: ltnil RdvgeDarrGRvYlPqD elaqa PSY2_LYCES : 182- 198: ltnil RdvgeDarrGRvYlPqD elaqa PSY_ARATH : 298- 314: ltnil RdvgeDarrGRvYlPqD elaqa PSY_CAPAN : 298- 314: ltnil RdvgeDarrGRvYlPqD elaqa PSY_NEUCR : 483- 499: yvnia RdivvDariGRvYlPtT wlkke L 12: 24.2283 15( 15) R-x(3,4)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 175- 191: ltnia RdiidDaaiDRcYlPaE wlqda CRTB_ERWUR : 162- 178: ltnia RdivdDahaGRcYlPaS wlehe CRTB_RHOCA : 167- 183: msnia RdvgeDaraGRlFlPtD wmvee CRTB_SYNP7 : 191- 207: ltnil RdvgeDarrGRiYlPqE elaqf CRTB_SYNY3 : 220- 236: ltnil RdvgeDverGRiYlPlE dlerf CRTB_THETH : 166- 182: ltnil RdvgeDlerDRvYlPlD llrah FDFT_HUMAN : 218- 234: ktnii RdyleDqqgGReFwPqE vwsry FDFT_RAT : 218- 234: ktnii RdyleDqqeGRqFwPqE vwgky FDFT_SCHPO : 222- 238: kvnii RdyreDfddNRhFwPrE iwsky FDFT_YEAST : 225- 241: ktnii RdyneDlvdGRsFwPkE iwsqy PSY1_LYCES : 286- 302: ltnil RdvgeDarrGRvYlPqD elaqa PSY2_LYCES : 182- 198: ltnil RdvgeDarrGRvYlPqD elaqa PSY_ARATH : 298- 314: ltnil RdvgeDarrGRvYlPqD elaqa PSY_CAPAN : 298- 314: ltnil RdvgeDarrGRvYlPqD elaqa PSY_NEUCR : 483- 499: yvnia RdivvDariGRvYlPtT wlkke M 13: 23.7283 15( 15) D-x(1,3)-D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 176- 191: tniar DiidDaaiDRcYlPaE wlqda CRTB_ERWUR : 163- 178: tniar DivdDahaGRcYlPaS wlehe CRTB_RHOCA : 168- 183: sniar DvgeDaraGRlFlPtD wmvee CRTB_SYNP7 : 192- 207: tnilr DvgeDarrGRiYlPqE elaqf CRTB_SYNY3 : 221- 236: tnilr DvgeDverGRiYlPlE dlerf CRTB_THETH : 167- 182: tnilr DvgeDlerDRvYlPlD llrah FDFT_HUMAN : 219- 234: tniir DyleDqqgGReFwPqE vwsry FDFT_RAT : 219- 234: tniir DyleDqqeGRqFwPqE vwgky FDFT_SCHPO : 223- 238: vniir DyreDfddNRhFwPrE iwsky FDFT_YEAST : 226- 241: tniir DyneDlvdGRsFwPkE iwsqy PSY1_LYCES : 287- 302: tnilr DvgeDarrGRvYlPqD elaqa PSY2_LYCES : 183- 198: tnilr DvgeDarrGRvYlPqD elaqa PSY_ARATH : 299- 314: tnilr DvgeDarrGRvYlPqD elaqa PSY_CAPAN : 299- 314: tnilr DvgeDarrGRvYlPqD elaqa PSY_NEUCR : 484- 499: vniar DivvDariGRvYlPtT wlkke N 14: 23.0235 15( 15) A-x(1,2)-Q-x(2)-[AN]-I-[AL]-x(2)-[AIV]-[AGILV] Occurences: 15(15) CRTB_ERWHE : 167- 178: cdlgl Af-QltNIArdII ddaai CRTB_ERWUR : 154- 165: cdlgl Af-QltNIArdIV ddaha CRTB_RHOCA : 159- 170: cdlgl Am-QmsNIArdVG edara CRTB_SYNP7 : 183- 194: lalgi An-QltNILrdVG edarr CRTB_SYNY3 : 212- 223: ialgv An-QltNILrdVG edver CRTB_THETH : 158- 169: vklgq Am-QltNILrdVG edler FDFT_HUMAN : 290- 302: vfnfc AipQvmAIAtlAA cynnq FDFT_RAT : 290- 302: vfnfc AipQvmAIAtlAA cynnh FDFT_SCHPO : 294- 306: ifnfc AipQvmAIAtlAA vfrnp FDFT_YEAST : 297- 309: tfqfc AipQvmAIAtlAL vfnnr PSY1_LYCES : 278- 289: lalgi An-QltNILrdVG edarr PSY2_LYCES : 174- 185: lalgi An-QltNILrdVG edarr PSY_ARATH : 290- 301: lalgi An-QltNILrdVG edarr PSY_CAPAN : 290- 301: lalgi An-QltNILrdVG edarr PSY_NEUCR : 475- 486: crmgi Al-QyvNIArdIV vdari O 15: 23.0204 24( 15) Y-x(1,3)-V-A-[AG]-x-V-G Occurences: 24(15) CRTB_ERWHE : 134- 143: edtlr YcyhVAGvVG lmmar CRTB_ERWHE : 136- 143: tlryc Yh--VAGvVG lmmar CRTB_ERWUR : 121- 130: ddtlr YcyhVAGvVG lmmaq CRTB_ERWUR : 123- 130: tlryc Yh--VAGvVG lmmaq CRTB_RHOCA : 126- 135: sdvqa YsarVAAaVG ammcv CRTB_SYNP7 : 138- 147: edlyt YcyrVAGtVG lmsqp CRTB_SYNP7 : 140- 147: lytyc Yr--VAGtVG lmsqp CRTB_SYNY3 : 167- 176: eeldl YcyrVAGtVG lmssa CRTB_SYNY3 : 169- 176: ldlyc Yr--VAGtVG lmssa CRTB_THETH : 126- 135: aellr YcyqVAGtVG rmmap CRTB_THETH : 128- 135: llryc Yq--VAGtVG rmmap FDFT_HUMAN : 171- 180: qewdk YchyVAGlVG iglsr FDFT_RAT : 171- 180: qdwdk YchyVAGlVG iglsr FDFT_SCHPO : 175- 184: edfnk YchyVAGlVG iglsr FDFT_YEAST : 178- 187: hdydv YchyVAGlVG dgltr PSY1_LYCES : 239- 248: delyl YcyyVAGtVG lmsvp PSY1_LYCES : 241- 248: lylyc Yy--VAGtVG lmsvp PSY2_LYCES : 135- 144: delyl YcyyVAGtVG lmsvp PSY2_LYCES : 137- 144: lylyc Yy--VAGtVG lmsvp PSY_ARATH : 251- 260: ddlyl YcyyVAGtVG lmsvp PSY_ARATH : 253- 260: lylyc Yy--VAGtVG lmsvp PSY_CAPAN : 251- 260: delyl YcyyVAGtVG lmsvp PSY_CAPAN : 253- 260: lylyc Yy--VAGtVG lmsvp PSY_NEUCR : 433- 442: kdlen YaiyVAGtVG elcia P 16: 21.9225 15( 15) Y-x(3)-R-x(2)-D-[DET]-x(2)-D-[DEG] Occurences: 15(15) CRTB_ERWHE : 40- 52: svlml YtwcRhcDDviDD qthgf CRTB_ERWUR : 27- 39: svlml YawcRhcDDviDD qtlgf CRTB_RHOCA : 40- 52: palal YafcRvaDDevDE vgapr CRTB_SYNP7 : 53- 65: aiwai YvwcRrtDElvDG pqaaq CRTB_SYNY3 : 82- 94: aiwai YlwcRrtDElvDG pqaat CRTB_THETH : 44- 56: gawav YaacRlgDEavDG egggp FDFT_HUMAN : 73- 85: avcif YlvlRalDTleDD mtisv FDFT_RAT : 73- 85: avcvf YlilRamDTveDD maisv FDFT_SCHPO : 68- 80: avmif YlvlRglDTveDD mtlpl FDFT_YEAST : 72- 84: cvtlf YlilRalDTieDD msieh PSY1_LYCES : 154- 166: aiwai YvwcRrtDElvDG pnasy PSY2_LYCES : 50- 62: aiwai YvwcRrtDElvDG pnash PSY_ARATH : 166- 178: aiwai YvwcRrtDElvDG pnash PSY_CAPAN : 166- 178: aiwai YvwcRrtDElvDG pnash PSY_NEUCR : 317- 329: dlill YsfcRlaDDlvDD aksrr Q 17: 20.5582 15( 15) D-x(3)-[DGN]-R-x-[FY]-x-P-x-[DEST] Occurences: 15(15) CRTB_ERWHE : 180- 191: rdiid DaaiDRcYlPaE wlqda CRTB_ERWUR : 167- 178: rdivd DahaGRcYlPaS wlehe CRTB_RHOCA : 172- 183: rdvge DaraGRlFlPtD wmvee CRTB_SYNP7 : 196- 207: rdvge DarrGRiYlPqE elaqf CRTB_SYNY3 : 225- 236: rdvge DverGRiYlPlE dlerf CRTB_THETH : 171- 182: rdvge DlerDRvYlPlD llrah FDFT_HUMAN : 223- 234: rdyle DqqgGReFwPqE vwsry FDFT_RAT : 223- 234: rdyle DqqeGRqFwPqE vwgky FDFT_SCHPO : 227- 238: rdyre DfddNRhFwPrE iwsky FDFT_YEAST : 230- 241: rdyne DlvdGRsFwPkE iwsqy PSY1_LYCES : 291- 302: rdvge DarrGRvYlPqD elaqa PSY2_LYCES : 187- 198: rdvge DarrGRvYlPqD elaqa PSY_ARATH : 303- 314: rdvge DarrGRvYlPqD elaqa PSY_CAPAN : 303- 314: rdvge DarrGRvYlPqD elaqa PSY_NEUCR : 488- 499: rdivv DariGRvYlPtT wlkke R 18: 19.8503 15( 15) V-A-[AG]-x-V-G Occurences: 15(15) CRTB_ERWHE : 138- 143: rycyh VAGvVG lmmar CRTB_ERWUR : 125- 130: rycyh VAGvVG lmmaq CRTB_RHOCA : 130- 135: aysar VAAaVG ammcv CRTB_SYNP7 : 142- 147: tycyr VAGtVG lmsqp CRTB_SYNY3 : 171- 176: lycyr VAGtVG lmssa CRTB_THETH : 130- 135: rycyq VAGtVG rmmap FDFT_HUMAN : 175- 180: kychy VAGlVG iglsr FDFT_RAT : 175- 180: kychy VAGlVG iglsr FDFT_SCHPO : 179- 184: kychy VAGlVG iglsr FDFT_YEAST : 182- 187: vychy VAGlVG dgltr PSY1_LYCES : 243- 248: lycyy VAGtVG lmsvp PSY2_LYCES : 139- 144: lycyy VAGtVG lmsvp PSY_ARATH : 255- 260: lycyy VAGtVG lmsvp PSY_CAPAN : 255- 260: lycyy VAGtVG lmsvp PSY_NEUCR : 437- 442: nyaiy VAGtVG elcia S 19: 17.7524 15( 15) R-x(2)-D-[DET]-x(2)-D-[DEG] Occurences: 15(15) CRTB_ERWHE : 44- 52: lytwc RhcDDviDD qthgf CRTB_ERWUR : 31- 39: lyawc RhcDDviDD qtlgf CRTB_RHOCA : 44- 52: lyafc RvaDDevDE vgapr CRTB_SYNP7 : 57- 65: iyvwc RrtDElvDG pqaaq CRTB_SYNY3 : 86- 94: iylwc RrtDElvDG pqaat CRTB_THETH : 48- 56: vyaac RlgDEavDG egggp FDFT_HUMAN : 77- 85: fylvl RalDTleDD mtisv FDFT_RAT : 77- 85: fylil RamDTveDD maisv FDFT_SCHPO : 72- 80: fylvl RglDTveDD mtlpl FDFT_YEAST : 76- 84: fylil RalDTieDD msieh PSY1_LYCES : 158- 166: iyvwc RrtDElvDG pnasy PSY2_LYCES : 54- 62: iyvwc RrtDElvDG pnash PSY_ARATH : 170- 178: iyvwc RrtDElvDG pnash PSY_CAPAN : 170- 178: iyvwc RrtDElvDG pnash PSY_NEUCR : 321- 329: lysfc RlaDDlvDD aksrr T 20: 15.6803 15( 15) A-[AG]-x-V-G Occurences: 15(15) CRTB_ERWHE : 139- 143: ycyhv AGvVG lmmar CRTB_ERWUR : 126- 130: ycyhv AGvVG lmmaq CRTB_RHOCA : 131- 135: ysarv AAaVG ammcv CRTB_SYNP7 : 143- 147: ycyrv AGtVG lmsqp CRTB_SYNY3 : 172- 176: ycyrv AGtVG lmssa CRTB_THETH : 131- 135: ycyqv AGtVG rmmap FDFT_HUMAN : 176- 180: ychyv AGlVG iglsr FDFT_RAT : 176- 180: ychyv AGlVG iglsr FDFT_SCHPO : 180- 184: ychyv AGlVG iglsr FDFT_YEAST : 183- 187: ychyv AGlVG dgltr PSY1_LYCES : 244- 248: ycyyv AGtVG lmsvp PSY2_LYCES : 140- 144: ycyyv AGtVG lmsvp PSY_ARATH : 256- 260: ycyyv AGtVG lmsvp PSY_CAPAN : 256- 260: ycyyv AGtVG lmsvp PSY_NEUCR : 438- 442: yaiyv AGtVG elcia Number of patterns evaluated by Pratt:4419 Total running time: 6 seconds