------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file SPERMADHESIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SPERMADHESIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AQN1_PIG 111 AQN3_PIG 116 ASFP_BOVIN 134 AWN_PIG 133 PSP1_PIG 109 Pratt run started at Thu Feb 6 21:14:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 27.1904 5( 5) I-x(2)-L-x(0,2)-N-x(0,2)-C-x-K-E-x(2)-E 2: 27.1904 5( 5) I-x(2,4)-L-N-x(0,2)-C-x-K-E-x(2)-E 3: 25.0203 5( 5) L-x-L-x-C-x-K-E-x(2)-E 4: 25.0203 5( 5) C-G-G-x-L-x(4)-G-x-I 5: 24.0203 5( 5) L-N-x(0,2)-C-x-K-E-x(2)-E 6: 20.8503 5( 5) K-x(2)-R-x(3)-H-x-A-S 7: 20.8503 5( 5) L-x-C-x-K-E-x(2)-E 8: 20.8503 5( 5) G-G-x-L-x(4)-G-x-I 9: 20.3503 6( 5) P-x(1,2)-N-x(2)-C-G-x(4)-E 10: 19.8503 6( 5) K-x(0,2)-R-x(3)-H-x-A-S 11: 19.8503 5( 5) G-x(4,5)-Y-x(4)-T-x(3,4)-T-x(4)-P 12: 16.6802 5( 5) R-x(3)-H-x-A-S 13: 16.6802 5( 5) G-x(5)-K-x-C-x-G 14: 16.6802 5( 5) C-x-K-E-x(2)-E 15: 16.6802 5( 5) N-x(2)-C-G-x(4)-E 16: 16.6802 5( 5) C-x-W-T-x(4)-P 17: 16.1802 5( 5) Y-x(4)-T-x(3,4)-T-x(4)-P 18: 15.6802 6( 5) P-x(0,1)-L-x(3)-C-x(0,1)-G 19: 15.6802 5( 5) G-x(1,2)-I-x(5)-P-x(3,4)-C 20: 15.1802 6( 5) G-x(2,3)-C-x-G-x(0,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 117.5285 5( 5) C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM] B 2: 107.8483 5( 5) C-G-G-x-L-x-[DEN]-x(2)-G-x-I-x(4)-[AG]-[LP]-x(2)-[DEN]-C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV] C 3: 107.8483 5( 5) G-G-x-L-x-[DEN]-x(2)-G-x-I-x(4)-[AG]-[LP]-x(2)-[DEN]-C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E D 4: 102.2954 5( 5) L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS] E 5: 98.1338 5( 5) L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS] F 6: 95.9026 5( 5) L-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS] G 7: 94.9296 5( 5) C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS]-[PS] H 8: 91.5087 5( 5) I-x(2)-L-x(0,2)-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV] I 9: 91.5087 5( 5) I-x(2,4)-L-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV] J 10: 67.5661 5( 5) G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS]-[PS]-x(3)-[IV]-x(3)-[ADGQ]-x-[PQS] K 11: 38.8428 5( 5) K-x(2)-R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] L 12: 37.8428 6( 5) K-x(0,2)-R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] M 13: 34.6728 5( 5) R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] N 14: 31.6444 6( 5) P-x(1,2)-N-x-[ANST]-C-G-x(4)-E-x(2)-[DEG]-x(2)-[AP]-[GT] O 15: 27.9744 5( 5) N-x-[ANST]-C-G-x(4)-E-x(2)-[DEG]-x(2)-[AP]-[GT] P 16: 24.6941 5( 5) G-x(1,2)-I-x(4)-[GL]-P-x(3,4)-C-[GIV]-x-[ET] Q 17: 22.4803 5( 5) G-x(4,5)-Y-x-[AEG]-x(2)-T-x(3,4)-T-x(4)-P R 18: 21.0443 5( 5) G-x(2,3)-C-[EG]-G-x(0,2)-L-x(3)-[NRS] S 19: 18.9533 6( 5) P-x(0,1)-L-[GN]-x(2)-C-x(0,1)-G T 20: 18.8102 5( 5) Y-x-[AEG]-x(2)-T-x(3,4)-T-x(4)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 117.5285 5( 5) C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM] Occurences: 5(5) AQN1_PIG : 30- 79: gpktd CIWTIlakPgsRVfVAIpyLNLACGKEyVEVqDGlPGAgnyGKLCSGigL tyqss AQN3_PIG : 30- 79: alttn CVWTIemkPghKIiLQIlpLNLTCGKEyLEVrDQrAGPdnfLKVCGGtgF vyqss ASFP_BOVIN : 51- 100: gpktn CVWTIqmpPeyHVrVSIqyLQLNCNKEsLEIiDGlPGSpvlGKICEGslM dyrss AWN_PIG : 30- 79: gpqkd CVWTIkvkPhfHVvLAIppLNLSCGKEyVELlDGpPGSeiiGKICGGisL vfrss PSP1_PIG : 27- 76: gpkte CVWTLqvdPkyKLlVSIptLNLTCGKEyVEIlEGaPGSkslGKFCEGlsI lnrgs B 2: 107.8483 5( 5) C-G-G-x-L-x-[DEN]-x(2)-G-x-I-x(4)-[AG]-[LP]-x(2)-[DEN]-C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV] Occurences: 5(5) AQN1_PIG : 9- 58: kgphk CGGvLrNysGrIstyeGPktDCIWTIlakPgsRVfVAIpyLNLACGKEyV evqdg AQN3_PIG : 9- 58: kgsdd CGGfLkNysGwIsyykALttNCVWTIemkPghKIiLQIlpLNLTCGKEyL evrdq ASFP_BOVIN : 30- 79: prntn CGGiLkEesGvIatyyGPktNCVWTIqmpPeyHVrVSIqyLQLNCNKEsL eiidg AWN_PIG : 9- 58: rrsrs CGGvLrDppGkIfnsdGPqkDCVWTIkvkPhfHVvLAIppLNLSCGKEyV elldg PSP1_PIG : 6- 55: ldyha CGGrLtDdyGtIftykGPktECVWTLqvdPkyKLlVSIptLNLTCGKEyV eileg C 3: 107.8483 5( 5) G-G-x-L-x-[DEN]-x(2)-G-x-I-x(4)-[AG]-[LP]-x(2)-[DEN]-C-[IV]-W-T-[IL]-x(3)-P-x(2)-[HKR]-[ILV]-x-[LV]-[AQS]-I-x(2)-L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E Occurences: 5(5) AQN1_PIG : 10- 59: gphkc GGvLrNysGrIstyeGPktDCIWTIlakPgsRVfVAIpyLNLACGKEyVE vqdgl AQN3_PIG : 10- 59: gsddc GGfLkNysGwIsyykALttNCVWTIemkPghKIiLQIlpLNLTCGKEyLE vrdqr ASFP_BOVIN : 31- 80: rntnc GGiLkEesGvIatyyGPktNCVWTIqmpPeyHVrVSIqyLQLNCNKEsLE iidgl AWN_PIG : 10- 59: rsrsc GGvLrDppGkIfnsdGPqkDCVWTIkvkPhfHVvLAIppLNLSCGKEyVE lldgp PSP1_PIG : 7- 56: dyhac GGrLtDdyGtIftykGPktECVWTLqvdPkyKLlVSIptLNLTCGKEyVE ilega D 4: 102.2954 5( 5) L-[NQ]-L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS] Occurences: 5(5) AQN1_PIG : 49- 96: vaipy LNLACGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalSikysRTA ghsas AQN3_PIG : 49- 96: lqilp LNLTCGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaTvkysRDS hhpas ASFP_BOVIN : 70- 117: vsiqy LQLNCNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimTvkyiREP ehpas AWN_PIG : 49- 96: laipp LNLSCGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaTikrlRTS ghras PSP1_PIG : 46- 93: vsipt LNLTCGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtVkykrDSG hpasp E 5: 98.1338 5( 5) L-[ANST]-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS] Occurences: 5(5) AQN1_PIG : 51- 100: ipyln LACGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalSikysRTAghsA ssfdi AQN3_PIG : 51- 100: ilpln LTCGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaTvkysRDShhpA ssfnv ASFP_BOVIN : 72- 121: iqylq LNCNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimTvkyiREPehpA sfyev AWN_PIG : 51- 100: ippln LSCGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaTikrlRTSghrA spfhi PSP1_PIG : 48- 97: iptln LTCGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtVkykrDSGhpaS pyeii F 6: 95.9026 5( 5) L-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS] Occurences: 5(5) AQN1_PIG : 49- 96: vaipy LNlaCGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalSikysRTA ghsas AQN3_PIG : 49- 96: lqilp LNltCGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaTvkysRDS hhpas ASFP_BOVIN : 72- 117: iqylq LN--CNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimTvkyiREP ehpas AWN_PIG : 49- 96: laipp LNlsCGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaTikrlRTS ghras PSP1_PIG : 46- 93: vsipt LNltCGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtVkykrDSG hpasp G 7: 94.9296 5( 5) C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS]-[PS] Occurences: 5(5) AQN1_PIG : 53- 101: ylnla CGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalSikysRTAghsAS sfdiy AQN3_PIG : 53- 101: plnlt CGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaTvkysRDShhpAS sfnvy ASFP_BOVIN : 74- 122: ylqln CNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimTvkyiREPehpAS fyevl AWN_PIG : 53- 101: plnls CGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaTikrlRTSghrAS pfhiy PSP1_PIG : 50- 98: tlnlt CGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtVkykrDSGhpaSP yeiif H 8: 91.5087 5( 5) I-x(2)-L-x(0,2)-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV] Occurences: 5(5) AQN1_PIG : 46- 89: rvfva IpyL--NlaCGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalS ikysr AQN3_PIG : 46- 89: kiilq IlpL--NltCGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaT vkysr ASFP_BOVIN : 67- 110: hvrvs IqyLqlN--CNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimT vkyir AWN_PIG : 46- 89: hvvla IppL--NlsCGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaT ikrlr PSP1_PIG : 43- 86: kllvs IptL--NltCGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtV kykrd I 9: 91.5087 5( 5) I-x(2,4)-L-N-x(0,2)-C-[GN]-K-E-x-[LV]-E-[ILV]-x-[DE]-[GQ]-x-[AP]-G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV] Occurences: 5(5) AQN1_PIG : 46- 89: rvfva Ipy--LNlaCGKEyVEVqDGlPGAgnyGKLCSGigLtyQSSsNalS ikysr AQN3_PIG : 46- 89: kiilq Ilp--LNltCGKEyLEVrDQrAGPdnfLKVCGGtgFvyQSShNvaT vkysr ASFP_BOVIN : 67- 110: hvrvs IqylqLN--CNKEsLEIiDGlPGSpvlGKICEGslMdyRSSgSimT vkyir AWN_PIG : 46- 89: hvvla Ipp--LNlsCGKEyVELlDGpPGSeiiGKICGGisLvfRSSsNiaT ikrlr PSP1_PIG : 43- 86: kllvs Ipt--LNltCGKEyVEIlEGaPGSkslGKFCEGlsIlnRGSsGmtV kykrd J 10: 67.5661 5( 5) G-[APS]-x(3)-[GL]-K-[FILV]-C-[EGS]-G-x(2)-[FILM]-x(2)-[QR]-[GS]-S-x-[GNS]-x(2)-[STV]-x(4)-[DR]-[DEST]-[AGPS]-x(3)-[AS]-[PS]-x(3)-[IV]-x(3)-[ADGQ]-x-[PQS] Occurences: 5(5) AQN1_PIG : 66- 111: qdglp GAgnyGKLCSGigLtyQSSsNalSikysRTAghsASsfdIyyyGdS AQN3_PIG : 66- 111: rdqra GPdnfLKVCGGtgFvyQSShNvaTvkysRDShhpASsfnVyfyGiP qgaka ASFP_BOVIN : 87- 132: idglp GSpvlGKICEGslMdyRSSgSimTvkyiREPehpASfyeVlyfQdP qa AWN_PIG : 66- 111: ldgpp GSeiiGKICGGisLvfRSSsNiaTikrlRTSghrASpfhIyyyAdP egplp PSP1_PIG : 63- 108: legap GSkslGKFCEGlsIlnRGSsGmtVkykrDSGhpaSPyeiIflrDsQ g K 11: 38.8428 5( 5) K-x(2)-R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] Occurences: 5(5) AQN1_PIG : 91- 111: nalsi KysRTAgHsASsFdIyYygdS AQN3_PIG : 91- 111: nvatv KysRDShHpASsFnVyFygiP qgaka ASFP_BOVIN : 112- 132: simtv KyiREPeHpASfYeVlYfqdP qa AWN_PIG : 91- 111: niati KrlRTSgHrASpFhIyYyadP egplp PSP1_PIG : 87- 107: sgmtv KykRDSgHpASpYeIiFlrdS qg L 12: 37.8428 6( 5) K-x(0,2)-R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] Occurences: 6(5) AQN1_PIG : 91- 111: nalsi KysRTAgHsASsFdIyYygdS AQN3_PIG : 91- 111: nvatv KysRDShHpASsFnVyFygiP qgaka ASFP_BOVIN : 112- 132: simtv KyiREPeHpASfYeVlYfqdP qa AWN_PIG : 91- 111: niati KrlRTSgHrASpFhIyYyadP egplp PSP1_PIG : 87- 107: sgmtv KykRDSgHpASpYeIiFlrdS qg PSP1_PIG : 89- 107: mtvky K--RDSgHpASpYeIiFlrdS qg M 13: 34.6728 5( 5) R-[DET]-[APS]-x-H-x-A-S-x-[FY]-x-[IV]-x-[FY]-x(3)-[PS] Occurences: 5(5) AQN1_PIG : 94- 111: sikys RTAgHsASsFdIyYygdS AQN3_PIG : 94- 111: tvkys RDShHpASsFnVyFygiP qgaka ASFP_BOVIN : 115- 132: tvkyi REPeHpASfYeVlYfqdP qa AWN_PIG : 94- 111: tikrl RTSgHrASpFhIyYyadP egplp PSP1_PIG : 90- 107: tvkyk RDSgHpASpYeIiFlrdS qg N 14: 31.6444 6( 5) P-x(1,2)-N-x-[ANST]-C-G-x(4)-E-x(2)-[DEG]-x(2)-[AP]-[GT] Occurences: 6(5) AQN1_PIG : 47- 66: vfvai PylNlACGkeyvEvqDglPG agnyg AQN3_PIG : 48- 66: ilqil Pl-NlTCGkeylEvrDqrAG pdnfl ASFP_BOVIN : 25- 43: smdwl Pr-NtNCGgilkEesGviAT yygpk AWN_PIG : 47- 66: vvlai PplNlSCGkeyvEllDgpPG seiig AWN_PIG : 48- 66: vlaip Pl-NlSCGkeyvEllDgpPG seiig PSP1_PIG : 44- 63: llvsi PtlNlTCGkeyvEilEgaPG skslg O 15: 27.9744 5( 5) N-x-[ANST]-C-G-x(4)-E-x(2)-[DEG]-x(2)-[AP]-[GT] Occurences: 5(5) AQN1_PIG : 50- 66: aipyl NlACGkeyvEvqDglPG agnyg AQN3_PIG : 50- 66: qilpl NlTCGkeylEvrDqrAG pdnfl ASFP_BOVIN : 27- 43: dwlpr NtNCGgilkEesGviAT yygpk AWN_PIG : 50- 66: aippl NlSCGkeyvEllDgpPG seiig PSP1_PIG : 47- 63: siptl NlTCGkeyvEilEgaPG skslg P 16: 24.6941 5( 5) G-x(1,2)-I-x(4)-[GL]-P-x(3,4)-C-[GIV]-x-[ET] Occurences: 5(5) AQN1_PIG : 18- 33: lrnys Gr-IstyeGPktd-CIwT ilakp AQN3_PIG : 39- 56: iemkp GhkIilqiLPlnltCGkE ylevr ASFP_BOVIN : 39- 54: lkees Gv-IatyyGPktn-CVwT iqmpp AWN_PIG : 18- 33: lrdpp Gk-IfnsdGPqkd-CVwT ikvkp PSP1_PIG : 15- 30: ltddy Gt-IftykGPkte-CVwT lqvdp Q 17: 22.4803 5( 5) G-x(4,5)-Y-x-[AEG]-x(2)-T-x(3,4)-T-x(4)-P Occurences: 5(5) AQN1_PIG : 18- 38: lrnys Grist-YeGpkTdciwTilakP gsrvf AQN3_PIG : 18- 38: lknys Gwisy-YkAltTncvwTiemkP ghkii ASFP_BOVIN : 39- 59: lkees Gviat-YyGpkTncvwTiqmpP eyhvr AWN_PIG : 113- 133: yadpe GplpfpYfErqTiia-TekniP PSP1_PIG : 15- 35: ltddy Gtift-YkGpkTecvwTlqvdP kykll R 18: 21.0443 5( 5) G-x(2,3)-C-[EG]-G-x(0,2)-L-x(3)-[NRS] Occurences: 5(5) AQN1_PIG : 5- 17: aqnk GphkCGGv-LrnyS grist AQN3_PIG : 5- 17: aqnk GsddCGGf-LknyS gwisy ASFP_BOVIN : 92- 103: gspvl Gki-CEGs-LmdyR ssgsi AWN_PIG : 71- 83: gseii Gki-CGGisLvfrS ssnia PSP1_PIG : 68- 78: gsksl Gkf-CEG--LsilN rgssg S 19: 18.9533 6( 5) P-x(0,1)-L-[GN]-x(2)-C-x(0,1)-G Occurences: 6(5) AQN1_PIG : 47- 54: vfvai PyLNlaC-G keyve AQN3_PIG : 48- 54: ilqil P-LNltC-G keyle ASFP_BOVIN : 89- 97: glpgs PvLGkiCeG slmdy AWN_PIG : 47- 54: vvlai PpLNlsC-G keyve AWN_PIG : 48- 54: vlaip P-LNlsC-G keyve PSP1_PIG : 44- 51: llvsi PtLNltC-G keyve T 20: 18.8102 5( 5) Y-x-[AEG]-x(2)-T-x(3,4)-T-x(4)-P Occurences: 5(5) AQN1_PIG : 23- 38: grist YeGpkTdciwTilakP gsrvf AQN3_PIG : 23- 38: gwisy YkAltTncvwTiemkP ghkii ASFP_BOVIN : 44- 59: gviat YyGpkTncvwTiqmpP eyhvr AWN_PIG : 119- 133: plpfp YfErqTiia-TekniP PSP1_PIG : 20- 35: gtift YkGpkTecvwTlqvdP kykll Number of patterns evaluated by Pratt:1033 Total running time: 0 seconds