------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file SPERACT_RECEPTOR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SPERACT_RECEPTOR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CD6_HUMAN 468 MSRE_BOVIN 453 MSRE_HUMAN 451 MSRE_MOUSE 110 SPER_STRPU 532 WC11_BOVIN 1436 Pratt run started at Thu Feb 6 21:14:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.0406 6( 6) G-x(5)-G-R-V-E-x(2,3)-H-x(2,3)-W-G-x(2)-C-D-D-x-W 2: 44.8706 6( 6) G-R-V-E-x(2,3)-H-x(2,3)-W-G-x(2)-C-D-D-x-W 3: 40.7005 6( 6) R-V-E-x(2,3)-H-x(2,3)-W-G-x(2)-C-D-D-x-W 4: 39.7005 7( 6) L-x(2)-G-x-G-x(3)-G-R-V-E-x(1,3)-H-x(2,4)-W-x(4)-D 5: 39.7005 7( 6) R-x(3)-G-x-G-x(3)-G-R-V-E-x(1,3)-H-x(2,4)-W-x(4)-D 6: 37.5305 6( 6) F-x(4)-G-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 7: 36.5305 6( 6) V-E-x(2,3)-H-x(2,3)-W-G-x(2)-C-D-D-x-W 8: 36.5305 6( 6) G-x(4)-E-G-x-V-E-x(1,2)-H-x(3,4)-W-x-T-x(5)-W 9: 36.0305 6( 6) T-x(0,1)-G-x(0,2)-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 10: 35.5305 6( 6) G-x(3,5)-G-x(0,2)-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 11: 35.5305 7( 6) G-x-G-x(3)-G-R-V-E-x(1,3)-H-x(2,4)-W-x(4)-D 12: 33.3604 6( 6) G-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 13: 32.8604 7( 6) G-x(3,4)-C-x-H-x-E-D-A-x-V-x-C 14: 32.3604 11( 6) G-x(2,4)-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 15: 32.3604 11( 6) G-x(0,2)-P-I-x(4)-V-x-C-x-G-x-E-x(5)-C 16: 32.3604 6( 6) E-G-x-V-E-x(1,2)-H-x(3,4)-W-x-T-x(5)-W 17: 32.3604 8( 6) V-x(0,1)-G-x-G-x(3)-G-R-V-E-x(4,5)-G 18: 32.3604 8( 6) R-x(0,1)-V-x(0,1)-G-x-G-x(3)-G-R-V-E 19: 31.3604 7( 6) G-x(3)-G-R-V-E-x(1,3)-H-x(2,4)-W-x(4)-D 20: 29.1904 8( 6) C-x-H-x-E-D-A-x-V-x-C Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 106.0587 6( 6) R-L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV] B 2: 105.0745 6( 6) L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] C 3: 102.2776 6( 6) G-[DGS]-[GS]-x(2)-[AES]-G-R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] D 4: 101.1744 8( 6) R-x(0,1)-V-x(0,1)-G-x-G-x(2)-[AEGQS]-G-R-V-E-[IMV]-x(3)-[GN]-[EGQS]-W-G-x-[IV]-C-D-[DP]-x-W-[DES]-x-[DEHR]-x-[AG]-x-[TV]-V-C-x(2)-[AL]-G-x(3)-[AGV]-x-[ADNQS] E 5: 97.6648 6( 6) G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] F 6: 90.8636 6( 6) G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] G 7: 89.6740 6( 6) G-R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] H 8: 89.0622 6( 6) G-[ASV]-x(3)-E-G-[QR]-V-E-x(1,2)-H-x(3,4)-W-[GN]-T-[IV]-[CD]-[DG]-x(2)-W-x(4)-[AG]-x-V-[LV]-C-[QR]-[QS]-[AL]-G-x(2)-[AEGT]-[AV] I 9: 85.5040 6( 6) R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] J 10: 82.2951 6( 6) E-G-[QR]-V-E-x(1,2)-H-x(3,4)-W-[GN]-T-[IV]-[CD]-[DG]-x(2)-W-x(4)-[AG]-x-V-[LV]-C-[QR]-[QS]-[AL]-G-x(2)-[AEGT]-[AV] K 11: 81.3339 6( 6) V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] L 12: 77.6800 8( 6) V-x(0,1)-G-x-G-x(2)-[AEGQS]-G-R-V-E-x(4,5)-G-x(3)-[STV]-x-[CD]-[DP]-D-x(2)-[DE]-x-[DER]-[ADGV]-x(2)-V-[CV]-x-[HKR]-[AQS]-[GL]-x(4)-[AV]-x(2)-[AV] M 13: 57.7760 6( 6) F-[GT]-x-[GS]-x-G-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C N 14: 51.4143 7( 6) R-L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W O 15: 49.8951 6( 6) T-x(0,1)-G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C P 16: 49.3951 6( 6) G-x(3,5)-G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Q 17: 47.2442 7( 6) L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W R 18: 47.2251 6( 6) G-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C S 19: 46.2251 11( 6) G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C T 20: 45.8303 10( 6) G-x(2,4)-P-I-[HW]-x-[DNS]-x-V-x-C-x-G-x-E-[ADS]-x-[ILV]-x-[DENR]-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 106.0587 6( 6) R-L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV] Occurences: 6(6) CD6_HUMAN : 162- 207: enral RLvDGGGAcAGRVEmleHge--WGSVCDDtWDleDAhVVCrQLGcgwA vqalp MSRE_BOVIN : 353- 398: qsntv RLvGGSGPhEGRVEif-Hegq-WGTVCDDrWElrGGlVVCrSLGykgV qsvhk MSRE_HUMAN : 351- 396: pftkv RLvGGSGPhEGRVEil-Hsgq-WGTICDDrWEvrVGqVVCrSLGypgV qavhk MSRE_MOUSE : 10- 55: plktv RLvGGSGAhEGRVEif-Hqgq-WGTICDDrWDirAGqVVCrSLGyqeV lavhk SPER_STRPU : 265- 310: vegdi RLmDGSGPhEGRVEiw-Hdda-WGTICDDgWDwaDAnVVCrQAGyrgA vkasg WC11_BOVIN : 135- 180: csgfv RLaGGDGPcSGRVEv--HsgeaWIPVSDGnFTlaTAqIICaELGcgkA vsvlg B 2: 105.0745 6( 6) L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 163- 210: nralr LvDGGGAcAGRVEmleHge--WGSVCDDtWDleDAhVVCrQLGcgwAvqA lpglh MSRE_BOVIN : 354- 401: sntvr LvGGSGPhEGRVEif-Hegq-WGTVCDDrWElrGGlVVCrSLGykgVqsV hkray MSRE_HUMAN : 352- 399: ftkvr LvGGSGPhEGRVEil-Hsgq-WGTICDDrWEvrVGqVVCrSLGypgVqaV hkaah MSRE_MOUSE : 11- 58: lktvr LvGGSGAhEGRVEif-Hqgq-WGTICDDrWDirAGqVVCrSLGyqeVlaV hkrah SPER_STRPU : 266- 313: egdir LmDGSGPhEGRVEiw-Hdda-WGTICDDgWDwaDAnVVCrQAGyrgAvkA sgfkg WC11_BOVIN : 136- 183: sgfvr LaGGDGPcSGRVEv--HsgeaWIPVSDGnFTlaTAqIICaELGcgkAvsV lghel C 3: 102.2776 6( 6) G-[DGS]-[GS]-x(2)-[AES]-G-R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 166- 210: lrlvd GGGacAGRVEmleHge-WGSVCDDtWDledAhVVCRQLGcgwAvqA lpglh MSRE_BOVIN : 357- 401: vrlvg GSGphEGRVEif-HegqWGTVCDDrWElrgGlVVCRSLGykgVqsV hkray MSRE_HUMAN : 355- 399: vrlvg GSGphEGRVEil-HsgqWGTICDDrWEvrvGqVVCRSLGypgVqaV hkaah MSRE_MOUSE : 14- 58: vrlvg GSGahEGRVEif-HqgqWGTICDDrWDiraGqVVCRSLGyqeVlaV hkrah SPER_STRPU : 269- 313: irlmd GSGphEGRVEiw-HddaWGTICDDgWDwadAnVVCRQAGyrgAvkA sgfkg WC11_BOVIN : 1160- 1204: lrlrg GDSecSGRVEvw-HngsWGTVCDDsWSlaeAeVVCQQLGcgqAleA vrsaa D 4: 101.1744 8( 6) R-x(0,1)-V-x(0,1)-G-x-G-x(2)-[AEGQS]-G-R-V-E-[IMV]-x(3)-[GN]-[EGQS]-W-G-x-[IV]-C-D-[DP]-x-W-[DES]-x-[DEHR]-x-[AG]-x-[TV]-V-C-x(2)-[AL]-G-x(3)-[AGV]-x-[ADNQS] Occurences: 8(6) CD6_HUMAN : 162- 209: enral RlVdGgGacAGRVEMlehGEWGsVCDDtWDlEdAhVVCrqLGcgwAvQ alpgl MSRE_BOVIN : 353- 400: qsntv RlVgGsGphEGRVEIfheGQWGtVCDDrWElRgGlVVCrsLGykgVqS vhkra MSRE_HUMAN : 351- 398: pftkv RlVgGsGphEGRVEIlhsGQWGtICDDrWEvRvGqVVCrsLGypgVqA vhkaa MSRE_MOUSE : 10- 57: plktv RlVgGsGahEGRVEIfhqGQWGtICDDrWDiRaGqVVCrsLGyqeVlA vhkra SPER_STRPU : 383- 429: khtrv RiV-GmGqgQGRVEVslgNGWGrVCDPdWSdHeAkTVCyhAGykwGaS raags WC11_BOVIN : 377- 424: dsrql RlVdGgGpcAGRVEIldqGSWGtICDDgWDlDdArVVCrqLGcgeAlN atgsa WC11_BOVIN : 587- 634: dsrqi RlVdGgGrcSGRVEIldqGSWGtICDDrWDlDdArVVCkqLGcgeAlD atvss WC11_BOVIN : 932- 979: dsrql RlVdGgGpcGGRVEIldqGSWGtICDDdWDlDdArVVCrqLGcgeAlN atgsa E 5: 97.6648 6( 6) G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 166- 210: lrlvd GGGAcAGRVEmleHge--WGSVCDDtWDleDAhVVCrQLGcgwAvqA lpglh MSRE_BOVIN : 357- 401: vrlvg GSGPhEGRVEif-Hegq-WGTVCDDrWElrGGlVVCrSLGykgVqsV hkray MSRE_HUMAN : 355- 399: vrlvg GSGPhEGRVEil-Hsgq-WGTICDDrWEvrVGqVVCrSLGypgVqaV hkaah MSRE_MOUSE : 14- 58: vrlvg GSGAhEGRVEif-Hqgq-WGTICDDrWDirAGqVVCrSLGyqeVlaV hkrah SPER_STRPU : 269- 313: irlmd GSGPhEGRVEiw-Hdda-WGTICDDgWDwaDAnVVCrQAGyrgAvkA sgfkg WC11_BOVIN : 139- 183: vrlag GDGPcSGRVEv--HsgeaWIPVSDGnFTlaTAqIICaELGcgkAvsV lghel F 6: 90.8636 6( 6) G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W-[GI]-[PST]-[IV]-[CS]-D-[DG]-x-[FW]-[DET]-x(2)-[ADGTV]-[AG]-x-[IV]-[IV]-C-x-[EQS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 168- 210: lvdgg GAcAGRVEmleHge--WGSVCDDtWDleDAhVVCrQLGcgwAvqA lpglh MSRE_BOVIN : 359- 401: lvggs GPhEGRVEif-Hegq-WGTVCDDrWElrGGlVVCrSLGykgVqsV hkray MSRE_HUMAN : 357- 399: lvggs GPhEGRVEil-Hsgq-WGTICDDrWEvrVGqVVCrSLGypgVqaV hkaah MSRE_MOUSE : 16- 58: lvggs GAhEGRVEif-Hqgq-WGTICDDrWDirAGqVVCrSLGyqeVlaV hkrah SPER_STRPU : 271- 313: lmdgs GPhEGRVEiw-Hdda-WGTICDDgWDwaDAnVVCrQAGyrgAvkA sgfkg WC11_BOVIN : 141- 183: laggd GPcSGRVEv--HsgeaWIPVSDGnFTlaTAqIICaELGcgkAvsV lghel G 7: 89.6740 6( 6) G-R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 172- 210: ggaca GRVEmleHge-WGSVCDDtWDledAhVVCRQLGcgwAvqA lpglh MSRE_BOVIN : 363- 401: sgphe GRVEif-HegqWGTVCDDrWElrgGlVVCRSLGykgVqsV hkray MSRE_HUMAN : 361- 399: sgphe GRVEil-HsgqWGTICDDrWEvrvGqVVCRSLGypgVqaV hkaah MSRE_MOUSE : 20- 58: sgahe GRVEif-HqgqWGTICDDrWDiraGqVVCRSLGyqeVlaV hkrah SPER_STRPU : 275- 313: sgphe GRVEiw-HddaWGTICDDgWDwadAnVVCRQAGyrgAvkA sgfkg WC11_BOVIN : 1166- 1204: dsecs GRVEvw-HngsWGTVCDDsWSlaeAeVVCQQLGcgqAleA vrsaa H 8: 89.0622 6( 6) G-[ASV]-x(3)-E-G-[QR]-V-E-x(1,2)-H-x(3,4)-W-[GN]-T-[IV]-[CD]-[DG]-x(2)-W-x(4)-[AG]-x-V-[LV]-C-[QR]-[QS]-[AL]-G-x(2)-[AEGT]-[AV] Occurences: 6(6) CD6_HUMAN : 270- 311: wrltg GAdrcEGQVEv-HfrgvWNTVCDseWypseAkVLCQSLGcgTA verpk MSRE_BOVIN : 357- 398: vrlvg GSgphEGRVEifHegq-WGTVCDdrWelrgGlVVCRSLGykGV qsvhk MSRE_HUMAN : 355- 396: vrlvg GSgphEGRVEilHsgq-WGTICDdrWevrvGqVVCRSLGypGV qavhk MSRE_MOUSE : 14- 55: vrlvg GSgahEGRVEifHqgq-WGTICDdrWdiraGqVVCRSLGyqEV lavhk SPER_STRPU : 269- 310: irlmd GSgphEGRVEiwHdda-WGTICDdgWdwadAnVVCRQAGyrGA vkasg WC11_BOVIN : 33- 74: lrlkd GVhrcEGRVEvkHqge-WGTVDGyrWtlkdAsVVCRQLGcgAA igfpg I 9: 85.5040 6( 6) R-V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 173- 210: gacag RVEmleHge-WGSVCDDtWDledAhVVCRQLGcgwAvqA lpglh MSRE_BOVIN : 364- 401: gpheg RVEif-HegqWGTVCDDrWElrgGlVVCRSLGykgVqsV hkray MSRE_HUMAN : 362- 399: gpheg RVEil-HsgqWGTICDDrWEvrvGqVVCRSLGypgVqaV hkaah MSRE_MOUSE : 21- 58: gaheg RVEif-HqgqWGTICDDrWDiraGqVVCRSLGyqeVlaV hkrah SPER_STRPU : 276- 313: gpheg RVEiw-HddaWGTICDDgWDwadAnVVCRQAGyrgAvkA sgfkg WC11_BOVIN : 1167- 1204: secsg RVEvw-HngsWGTVCDDsWSlaeAeVVCQQLGcgqAleA vrsaa J 10: 82.2951 6( 6) E-G-[QR]-V-E-x(1,2)-H-x(3,4)-W-[GN]-T-[IV]-[CD]-[DG]-x(2)-W-x(4)-[AG]-x-V-[LV]-C-[QR]-[QS]-[AL]-G-x(2)-[AEGT]-[AV] Occurences: 6(6) CD6_HUMAN : 275- 311: gadrc EGQVEv-HfrgvWNTVCDseWypseAkVLCQSLGcgTA verpk MSRE_BOVIN : 362- 398: gsgph EGRVEifHegq-WGTVCDdrWelrgGlVVCRSLGykGV qsvhk MSRE_HUMAN : 360- 396: gsgph EGRVEilHsgq-WGTICDdrWevrvGqVVCRSLGypGV qavhk MSRE_MOUSE : 19- 55: gsgah EGRVEifHqgq-WGTICDdrWdiraGqVVCRSLGyqEV lavhk SPER_STRPU : 274- 310: gsgph EGRVEiwHdda-WGTICDdgWdwadAnVVCRQAGyrGA vkasg WC11_BOVIN : 38- 74: gvhrc EGRVEvkHqge-WGTVDGyrWtlkdAsVVCRQLGcgAA igfpg K 11: 81.3339 6( 6) V-E-x(2,3)-H-x(2,3)-W-G-[ST]-[IV]-C-D-D-x-W-[DES]-x(3)-[AG]-x-V-V-C-[QR]-[QS]-[AL]-G-x(3)-[AV]-x(2)-[AV] Occurences: 6(6) CD6_HUMAN : 174- 210: acagr VEmleHge-WGSVCDDtWDledAhVVCRQLGcgwAvqA lpglh MSRE_BOVIN : 365- 401: phegr VEif-HegqWGTVCDDrWElrgGlVVCRSLGykgVqsV hkray MSRE_HUMAN : 363- 399: phegr VEil-HsgqWGTICDDrWEvrvGqVVCRSLGypgVqaV hkaah MSRE_MOUSE : 22- 58: ahegr VEif-HqgqWGTICDDrWDiraGqVVCRSLGyqeVlaV hkrah SPER_STRPU : 277- 313: phegr VEiw-HddaWGTICDDgWDwadAnVVCRQAGyrgAvkA sgfkg WC11_BOVIN : 1168- 1204: ecsgr VEvw-HngsWGTVCDDsWSlaeAeVVCQQLGcgqAleA vrsaa L 12: 77.6800 8( 6) V-x(0,1)-G-x-G-x(2)-[AEGQS]-G-R-V-E-x(4,5)-G-x(3)-[STV]-x-[CD]-[DP]-D-x(2)-[DE]-x-[DER]-[ADGV]-x(2)-V-[CV]-x-[HKR]-[AQS]-[GL]-x(4)-[AV]-x(2)-[AV] Occurences: 8(6) CD6_HUMAN : 164- 210: ralrl VdGgGacAGRVEmleh-GewgSvCDDtwDlEDahVVcRQLgcgwAvqA lpglh MSRE_BOVIN : 355- 401: ntvrl VgGsGphEGRVEifhe-GqwgTvCDDrwElRGglVVcRSLgykgVqsV hkray MSRE_HUMAN : 353- 399: tkvrl VgGsGphEGRVEilhs-GqwgTiCDDrwEvRVgqVVcRSLgypgVqaV hkaah MSRE_MOUSE : 12- 58: ktvrl VgGsGahEGRVEifhq-GqwgTiCDDrwDiRAgqVVcRSLgyqeVlaV hkrah SPER_STRPU : 385- 431: trvri V-GmGqgQGRVEvslgnGwgrVcDPDwsDhEAktVCyHAGykwgAsrA agsae WC11_BOVIN : 379- 425: rqlrl VdGgGpcAGRVEildq-GswgTiCDDgwDlDDarVVcRQLgcgeAlnA tgsah WC11_BOVIN : 589- 635: rqirl VdGgGrcSGRVEildq-GswgTiCDDrwDlDDarVVcKQLgcgeAldA tvssf WC11_BOVIN : 934- 980: rqlrl VdGgGpcGGRVEildq-GswgTiCDDdwDlDDarVVcRQLgcgeAlnA tgsah M 13: 57.7760 6( 6) F-[GT]-x-[GS]-x-G-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Occurences: 6(6) CD6_HUMAN : 216- 240: lpglh FTpGrGPIhrDQVnCsGaEAyLwDC pglpg MSRE_BOVIN : 407- 431: hkray FGkGtGPIwlNEVfCfGkESsIeEC rirqw MSRE_HUMAN : 405- 429: hkaah FGqGtGPIwlNEVfCfGrESsIeEC kirqw MSRE_MOUSE : 64- 88: hkrah FGqGtGPIwlNEVmCfGrESsIeNC kinqw SPER_STRPU : 209- 233: ktdgh FGfStGPIilDAVdCeGtEAhItEC nmpvt WC11_BOVIN : 641- 665: tvssf FGtGsGPIwlDEVnCrGeESqVwRC pswgw N 14: 51.4143 7( 6) R-L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W Occurences: 7(6) CD6_HUMAN : 162- 182: enral RLvDGGGAcAGRVEmleHge--W gsvcd MSRE_BOVIN : 353- 373: qsntv RLvGGSGPhEGRVEif-Hegq-W gtvcd MSRE_HUMAN : 351- 371: pftkv RLvGGSGPhEGRVEil-Hsgq-W gticd MSRE_MOUSE : 10- 30: plktv RLvGGSGAhEGRVEif-Hqgq-W gticd SPER_STRPU : 265- 285: vegdi RLmDGSGPhEGRVEiw-Hdda-W gticd WC11_BOVIN : 135- 155: csgfv RLaGGDGPcSGRVEv--HsgeaW ipvsd WC11_BOVIN : 690- 710: csgfv RLaGGDGPcSGRVEv--HsgeaW tpvsd O 15: 49.8951 6( 6) T-x(0,1)-G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Occurences: 6(6) CD6_HUMAN : 217- 240: pglhf TpGrgPIhrDQVnCsGaEAyLwDC pglpg MSRE_BOVIN : 411- 431: yfgkg T-G--PIwlNEVfCfGkESsIeEC rirqw MSRE_HUMAN : 409- 429: hfgqg T-G--PIwlNEVfCfGrESsIeEC kirqw MSRE_MOUSE : 68- 88: hfgqg T-G--PIwlNEVmCfGrESsIeNC kinqw SPER_STRPU : 213- 233: hfgfs T-G--PIilDAVdCeGtEAhItEC nmpvt WC11_BOVIN : 643- 665: ssffg T-GsgPIwlDEVnCrGeESqVwRC pswgw P 16: 49.3951 6( 6) G-x(3,5)-G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Occurences: 6(6) CD6_HUMAN : 213- 240: vqalp GlhftpGrgPIhrDQVnCsGaEAyLwDC pglpg MSRE_BOVIN : 408- 431: krayf Gkgt--G--PIwlNEVfCfGkESsIeEC rirqw MSRE_HUMAN : 406- 429: kaahf Gqgt--G--PIwlNEVfCfGrESsIeEC kirqw MSRE_MOUSE : 65- 88: krahf Gqgt--G--PIwlNEVmCfGrESsIeNC kinqw SPER_STRPU : 210- 233: tdghf Gfst--G--PIilDAVdCeGtEAhItEC nmpvt WC11_BOVIN : 642- 665: vssff Gtgs--G--PIwlDEVnCrGeESqVwRC pswgw Q 17: 47.2442 7( 6) L-x-[DG]-G-[DGS]-G-[AP]-x-[AES]-G-R-V-E-x(1,3)-H-x(2,4)-W Occurences: 7(6) CD6_HUMAN : 163- 182: nralr LvDGGGAcAGRVEmleHge--W gsvcd MSRE_BOVIN : 354- 373: sntvr LvGGSGPhEGRVEif-Hegq-W gtvcd MSRE_HUMAN : 352- 371: ftkvr LvGGSGPhEGRVEil-Hsgq-W gticd MSRE_MOUSE : 11- 30: lktvr LvGGSGAhEGRVEif-Hqgq-W gticd SPER_STRPU : 266- 285: egdir LmDGSGPhEGRVEiw-Hdda-W gticd WC11_BOVIN : 136- 155: sgfvr LaGGDGPcSGRVEv--HsgeaW ipvsd WC11_BOVIN : 691- 710: sgfvr LaGGDGPcSGRVEv--HsgeaW tpvsd R 18: 47.2251 6( 6) G-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Occurences: 6(6) CD6_HUMAN : 221- 240: ftpgr GPIhrDQVnCsGaEAyLwDC pglpg MSRE_BOVIN : 412- 431: fgkgt GPIwlNEVfCfGkESsIeEC rirqw MSRE_HUMAN : 410- 429: fgqgt GPIwlNEVfCfGrESsIeEC kirqw MSRE_MOUSE : 69- 88: fgqgt GPIwlNEVmCfGrESsIeNC kinqw SPER_STRPU : 214- 233: fgfst GPIilDAVdCeGtEAhItEC nmpvt WC11_BOVIN : 646- 665: fgtgs GPIwlDEVnCrGeESqVwRC pswgw S 19: 46.2251 11( 6) G-x(0,2)-P-I-x(2)-[DN]-[AEQ]-V-x-C-x-G-x-E-[AS]-x-[ILV]-x-[DENR]-C Occurences: 11(6) CD6_HUMAN : 219- 240: lhftp GrgPIhrDQVnCsGaEAyLwDC pglpg CD6_HUMAN : 221- 240: ftpgr G--PIhrDQVnCsGaEAyLwDC pglpg MSRE_BOVIN : 410- 431: ayfgk GtgPIwlNEVfCfGkESsIeEC rirqw MSRE_BOVIN : 412- 431: fgkgt G--PIwlNEVfCfGkESsIeEC rirqw MSRE_HUMAN : 408- 429: ahfgq GtgPIwlNEVfCfGrESsIeEC kirqw MSRE_HUMAN : 410- 429: fgqgt G--PIwlNEVfCfGrESsIeEC kirqw MSRE_MOUSE : 67- 88: ahfgq GtgPIwlNEVmCfGrESsIeNC kinqw MSRE_MOUSE : 69- 88: fgqgt G--PIwlNEVmCfGrESsIeNC kinqw SPER_STRPU : 214- 233: fgfst G--PIilDAVdCeGtEAhItEC nmpvt WC11_BOVIN : 644- 665: sffgt GsgPIwlDEVnCrGeESqVwRC pswgw WC11_BOVIN : 646- 665: fgtgs G--PIwlDEVnCrGeESqVwRC pswgw T 20: 45.8303 10( 6) G-x(2,4)-P-I-[HW]-x-[DNS]-x-V-x-C-x-G-x-E-[ADS]-x-[ILV]-x-[DENR]-C Occurences: 10(6) CD6_HUMAN : 219- 240: lhftp Grg--PIHrDqVnCsGaEAyLwDC pglpg MSRE_BOVIN : 408- 431: krayf GkgtgPIWlNeVfCfGkESsIeEC rirqw MSRE_BOVIN : 410- 431: ayfgk Gtg--PIWlNeVfCfGkESsIeEC rirqw MSRE_HUMAN : 406- 429: kaahf GqgtgPIWlNeVfCfGrESsIeEC kirqw MSRE_HUMAN : 408- 429: ahfgq Gtg--PIWlNeVfCfGrESsIeEC kirqw MSRE_MOUSE : 65- 88: krahf GqgtgPIWlNeVmCfGrESsIeNC kinqw MSRE_MOUSE : 67- 88: ahfgq Gtg--PIWlNeVmCfGrESsIeNC kinqw SPER_STRPU : 322- 345: kgedf GftwaPIHtSfVmCtGvEDrLiDC ilrdg WC11_BOVIN : 642- 665: vssff GtgsgPIWlDeVnCrGeESqVwRC pswgw WC11_BOVIN : 644- 665: sffgt Gsg--PIWlDeVnCrGeESqVwRC pswgw Number of patterns evaluated by Pratt:5749 Total running time: 4 seconds