------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file SPASE_I_3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SPASE_I_3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IMP1_YEAST 190 IMP2_YEAST 177 LEPA_BACAM 185 LEPC_BACCL 182 LEPP_BACSU 186 LEPS_BACSU 184 LEP_BACAM 193 LEP_BACLI 186 LEP_ECOLI 323 LEP_HAEIN 349 LEP_PSEFL 284 LEP_SALTY 324 SC11_YEAST 167 SPC3_CANFA 191 SPC4_CANFA 179 SPC4_RAT 179 YCSB_BACSU 187 Pratt run started at Thu Feb 6 21:14:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 17( 17) D-N-x(4,5)-D 2: 12.0102 17( 17) G-x(0,1)-S-M 3: 11.5102 25( 17) K-x(1,2)-V-x(0,1)-G 4: 11.0102 27( 17) L-x(2,4)-K-x(1,2)-V 5: 11.0102 29( 17) G-x(1,2)-I-x(0,2)-V 6: 11.0102 25( 17) S-x(0,2)-M-x(3,4)-L 7: 10.5102 25( 17) V-x(2,4)-V-x(0,2)-L 8: 10.5102 23( 17) R-x(0,2)-G-x(1,3)-I 9: 10.5102 38( 17) V-x(0,2)-V-x(0,2)-L 10: 10.5102 25( 17) P-x(3,5)-V-x(0,2)-G 11: 8.3401 37( 17) G-L 12: 8.3401 23( 17) Y-x-K 13: 8.3401 36( 17) V-x-G 14: 8.3401 34( 17) V-x(4)-G 15: 8.3401 46( 17) I-V 16: 8.3401 32( 17) I-x(3)-V 17: 8.3401 33( 17) L-x(3)-K 18: 8.3401 64( 17) G-D 19: 8.3401 35( 17) G-x(3)-V 20: 8.3401 32( 17) G-x(2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 26.1034 17( 17) G-x(0,1)-S-M-x-[PS]-[AT]-[FL]-x(3)-[DENT]-x(2)-[FILV] B 2: 13.1929 24( 17) S-x(0,2)-M-x(3,4)-L-x(3)-[DENT] C 3: 12.0102 17( 17) D-N-x(4,5)-D D 4: 11.5650 20( 17) G-x-[IV]-x-V E 5: 11.5490 24( 17) G-D-[NV] F 6: 11.5102 25( 17) K-x(1,2)-V-x(0,1)-G G 7: 11.0102 27( 17) L-x(2,4)-K-x(1,2)-V H 8: 11.0102 29( 17) G-x(1,2)-I-x(0,2)-V I 9: 10.5102 25( 17) V-x(2,4)-V-x(0,2)-L J 10: 10.5102 23( 17) R-x(0,2)-G-x(1,3)-I K 11: 10.5102 38( 17) V-x(0,2)-V-x(0,2)-L L 12: 10.5102 25( 17) P-x(3,5)-V-x(0,2)-G M 13: 10.2489 22( 17) I-x(3)-V-[AGILV] N 14: 9.9893 19( 17) Y-[AGILPV]-K O 15: 8.3401 37( 17) G-L P 16: 8.3401 36( 17) V-x-G Q 17: 8.3401 34( 17) V-x(4)-G R 18: 8.3401 46( 17) I-V S 19: 8.3401 33( 17) L-x(3)-K T 20: 8.3401 35( 17) G-x(3)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 26.1034 17( 17) G-x(0,1)-S-M-x-[PS]-[AT]-[FL]-x(3)-[DENT]-x(2)-[FILV] Occurences: 17(17) IMP1_YEAST : 38- 52: ftetr GeSMlPTLsatNdyV hvlkn IMP2_YEAST : 39- 53: iaqvk GtSMqPTLnpqTetL atdwv LEPA_BACAM : 43- 57: pyvvd GeSMePTLhdrEriF vnmtv LEPC_BACCL : 36- 50: nyvve GkSMmPTLesgNllI vnkls LEPP_BACSU : 42- 56: pyvve GkSMdPTLvdsErlF vnktv LEPS_BACSU : 41- 55: pyvvd GdSMyPTLhnrErvF vnmtv LEP_BACAM : 49- 63: pylve GsSMyPTLhdgErlF vnksv LEP_BACLI : 42- 56: pylve GtSMdPTLhdgErlF vyktv LEP_ECOLI : 89- 102: fqips G-SMmPTLligDfiL vekfa LEP_HAEIN : 114- 127: fqips G-SMeSTLrvgDflV vnkya LEP_PSEFL : 89- 102: fqips G-SMkPTLdvgDfiL vnkfs LEP_SALTY : 90- 103: fqips G-SMmPTLligDfiL vekfa SC11_YEAST : 43- 56: vvvls G-SMePAFqrgDilF lwnrn SPC3_CANFA : 66- 79: vvvls G-SMePAFhrgDllF ltnfr SPC4_CANFA : 55- 68: vvvls G-SMePAFhrgDllF ltnrv SPC4_RAT : 55- 68: vvvls G-SMePAFhrgDllF ltnrv YCSB_BACSU : 44- 58: pflie GsSMaPTLkdsEriL vdkav B 2: 13.1929 24( 17) S-x(0,2)-M-x(3,4)-L-x(3)-[DENT] Occurences: 24(17) IMP1_YEAST : 40- 49: etrge S--Mlpt-LsatN dyvhv IMP2_YEAST : 41- 50: qvkgt S--Mqpt-LnpqT etlat LEPA_BACAM : 45- 54: vvdge S--Mept-LhdrE rifvn LEPC_BACCL : 38- 47: vvegk S--Mmpt-LesgN llivn LEPP_BACSU : 44- 53: vvegk S--Mdpt-LvdsE rlfvn LEPS_BACSU : 43- 52: vvdgd S--Mypt-LhnrE rvfvn LEP_BACAM : 50- 60: ylveg Ss-Mypt-LhdgE rlfvn LEP_BACAM : 51- 60: lvegs S--Mypt-LhdgE rlfvn LEP_BACLI : 44- 53: lvegt S--Mdpt-LhdgE rlfvy LEP_ECOLI : 88- 99: pfqip SgsMmpt-LligD filve LEP_ECOLI : 90- 99: qipsg S--Mmpt-LligD filve LEP_HAEIN : 113- 124: pfqip SgsMest-LrvgD flvvn LEP_HAEIN : 115- 124: qipsg S--Mest-LrvgD flvvn LEP_PSEFL : 88- 99: pfqip SgsMkpt-LdvgD filvn LEP_PSEFL : 90- 99: qipsg S--Mkpt-LdvgD filvn LEP_SALTY : 89- 100: pfqip SgsMmpt-LligD filve LEP_SALTY : 91- 100: qipsg S--Mmpt-LligD filve SC11_YEAST : 19- 31: cflfa SayMfwqgLaiaT nsasp SPC3_CANFA : 42- 54: amivs SalMiwkgLivlT gsesp SPC4_CANFA : 31- 43: gmivs SalMiwkgLmviT gsesp SPC4_RAT : 31- 43: gmivs SalMiwkgLmliT gsesp YCSB_BACSU : 45- 55: flieg Ss-Mapt-LkdsE rilvd YCSB_BACSU : 46- 55: liegs S--Mapt-LkdsE rilvd YCSB_BACSU : 97- 109: glpgd SikMkndqLyinD kkvee C 3: 12.0102 17( 17) D-N-x(4,5)-D Occurences: 17(17) IMP1_YEAST : 131- 138: vwvtg DNlshslD srtyn IMP2_YEAST : 124- 131: iwveg DNyfhsiD sntfg LEPA_BACAM : 147- 154: yfvmg DNrrnsmD srngl LEPC_BACCL : 145- 152: ifvlg DNrlsswD srhfg LEPP_BACSU : 148- 155: yfvmg DNrqesmD srngl LEPS_BACSU : 146- 153: yfvmg DNrrnsmD srngl LEP_BACAM : 155- 162: yfvmg DNrlnsmD srngl LEP_BACLI : 148- 155: yfvmg DNrqrsmD srngl LEP_ECOLI : 273- 280: yfmmg DNrdnsaD srywg LEP_HAEIN : 187- 193: alssk DNmsgv-D yikri LEP_PSEFL : 226- 233: yfmmg DNrdnsnD srywd LEP_SALTY : 274- 281: yfmmg DNrdnsaD srywg SC11_YEAST : 103- 109: lltkg DNnagn-D islya SPC3_CANFA : 127- 133: fltkg DNnevd-D rglyk SPC4_CANFA : 116- 122: fltkg DNnavd-D rglyk SPC4_RAT : 116- 122: fltkg DNnavd-D rglyk YCSB_BACSU : 149- 156: yfvmg DNrlnslD srngm D 4: 11.5650 20( 17) G-x-[IV]-x-V Occurences: 20(17) IMP1_YEAST : 106- 110: ivnyv GdVlV deerf IMP1_YEAST : 124- 128: ikvpe GhVwV tgdnl IMP2_YEAST : 117- 121: vnlpr GhIwV egdny LEPA_BACAM : 71- 75: sdfkr GqIvV lngen LEPA_BACAM : 133- 137: ltddf GpVkV pddky LEPC_BACCL : 138- 142: trvpp GcIfV lgdnr LEPP_BACSU : 134- 138: ltgdf GpIkV pkdky LEPS_BACSU : 69- 73: gefdr GdIvV lngdd LEPS_BACSU : 132- 136: ltddf GpVkV pdnky LEP_BACAM : 141- 145: ltgdf GpVkV pkgky LEP_BACLI : 134- 138: ltgdf GpVkV pegky LEP_ECOLI : 128- 132: ghpkr GdIvV fkype LEP_HAEIN : 153- 157: ekpqr GdViV fkapq LEP_PSEFL : 128- 132: gdpqr GdVmV fryps LEP_SALTY : 129- 133: ghpkr GdIvV fkype SC11_YEAST : 67- 71: tfnqv GdVvV yeveg SPC3_CANFA : 91- 95: dpira GeIvV fkveg SPC4_CANFA : 80- 84: dpirv GeIvV frieg SPC4_RAT : 80- 84: dpirv GeIvV frieg YCSB_BACSU : 72- 76: ggfhr GdIiV ihdkk E 5: 11.5490 24( 17) G-D-[NV] Occurences: 24(17) IMP1_YEAST : 106- 108: ivnyv GDV lvdee IMP1_YEAST : 130- 132: hvwvt GDN lshsl IMP2_YEAST : 123- 125: hiwve GDN yfhsi LEPA_BACAM : 146- 148: kyfvm GDN rrnsm LEPC_BACCL : 144- 146: cifvl GDN rlssw LEPP_BACSU : 147- 149: kyfvm GDN rqesm LEPS_BACSU : 145- 147: kyfvm GDN rrnsm LEP_BACAM : 154- 156: kyfvm GDN rlnsm LEP_BACLI : 147- 149: kyfvm GDN rqrsm LEP_ECOLI : 231- 233: rketl GDV thril LEP_ECOLI : 272- 274: qyfmm GDN rdnsa LEP_HAEIN : 153- 155: ekpqr GDV ivfka LEP_HAEIN : 256- 258: eltek GDV thnvl LEP_PSEFL : 128- 130: gdpqr GDV mvfry LEP_PSEFL : 152- 154: vvglp GDV vryts LEP_PSEFL : 225- 227: hyfmm GDN rdnsn LEP_SALTY : 232- 234: rketl GDV thril LEP_SALTY : 273- 275: qyfmm GDN rdnsa SC11_YEAST : 67- 69: tfnqv GDV vvyev SC11_YEAST : 102- 104: flltk GDN nagnd SPC3_CANFA : 126- 128: kfltk GDN nevdd SPC4_CANFA : 115- 117: kfltk GDN navdd SPC4_RAT : 115- 117: kfltk GDN navdd YCSB_BACSU : 148- 150: kyfvm GDN rlnsl F 6: 11.5102 25( 17) K-x(1,2)-V-x(0,1)-G Occurences: 25(17) IMP1_YEAST : 84- 88: nhric Kr-VtG mpgdl IMP2_YEAST : 91- 95: rkvyc Kr-VkG lpfdt LEPA_BACAM : 141- 146: kvpdd KyfVmG dnrrn LEPC_BACCL : 79- 83: kedyv Kr-ViG lpgdr LEPP_BACSU : 123- 126: nkena Kk-V-G inltg LEPP_BACSU : 142- 147: kvpkd KyfVmG dnrqe LEPS_BACSU : 140- 145: kvpdn KyfVmG dnrrn LEP_BACAM : 149- 154: kvpkg KyfVmG dnrln LEP_BACLI : 142- 147: kvpeg KyfVmG dnrqr LEP_BACLI : 165- 170: lglid KkrVaG tsqfv LEP_BACLI : 166- 170: glidk Kr-VaG tsqfv LEP_ECOLI : 145- 149: kldyi KraV-G lpgdk LEP_HAEIN : 196- 200: gvdyi KriV-G kggdr LEP_HAEIN : 216- 220: eqktl Kv-VyG kegkp LEP_HAEIN : 315- 319: gfvpe KniV-G katyi LEP_PSEFL : 145- 149: nvnyi KrvV-G lpgdv LEP_PSEFL : 145- 149: nvnyi Kr-VvG lpgdv LEP_SALTY : 146- 150: kldyi KraV-G lpgdk SC11_YEAST : 124- 128: ylnks KeiV-G tvkgy SPC3_CANFA : 146- 151: qnwle KkdVvG rargf SPC3_CANFA : 147- 151: nwlek KdvV-G rargf SPC3_CANFA : 147- 151: nwlek Kd-VvG rargf SPC4_CANFA : 135- 140: qhwle KkdVvG rargf SPC4_CANFA : 136- 140: hwlek KdvV-G rargf SPC4_CANFA : 136- 140: hwlek Kd-VvG rargf SPC4_RAT : 135- 140: qhwle KkdVvG rargf SPC4_RAT : 136- 140: hwlek KdvV-G rargf SPC4_RAT : 136- 140: hwlek Kd-VvG rargf YCSB_BACSU : 143- 148: evpsg KyfVmG dnrln G 7: 11.0102 27( 17) L-x(2,4)-K-x(1,2)-V Occurences: 27(17) IMP1_YEAST : 149- 155: alpmg Limg-Ki-V aannf IMP2_YEAST : 59- 65: atdwv Llw--KfgV knpsn LEPA_BACAM : 102- 109: mkndq LyingKk-V sepyl LEPC_BACCL : 96- 103: ykndi LyvngKk-V depyl LEPP_BACSU : 14- 21: kkssi Lewg-KaiV iavil LEPP_BACSU : 55- 61: vdser Lfvn-Kt-V kytgn LEPS_BACSU : 13- 20: kkksi Lewa-KaiV iavvl LEPS_BACSU : 100- 107: mkndq LyingKk-V depyl LEP_BACAM : 62- 68: hdger Lfvn-Ks-V nyige LEP_BACLI : 55- 61: hdger Lfvy-Kt-V ryvge LEP_BACLI : 103- 110: mkddt LyingKk-V sepyl LEP_BACLI : 160- 168: dsrng LglidKkrV agtsq LEP_BACLI : 162- 168: rnglg Lidk-Kr-V agtsq LEP_BACLI : 162- 168: rnglg Lid--KkrV agtsq LEP_ECOLI : 141- 148: pedpk Ldyi-KraV glpgd LEP_HAEIN : 250- 258: afpne LelteKgdV thnvl LEP_HAEIN : 252- 258: pnele Lte--KgdV thnvl LEP_PSEFL : 112- 119: sygir LpvidKk-V ievgd LEP_SALTY : 19- 26: lvtgi LwcvdKf-V fapkr LEP_SALTY : 142- 149: pedpk Ldyi-KraV glpgd LEP_SALTY : 293- 298: vpean Lvg--Ka-V aiwms SC11_YEAST : 120- 127: nkkiy Lnks-KeiV gtvkg SPC3_CANFA : 144- 149: egqnw Lek--Kd-V vgrar SPC3_CANFA : 144- 150: egqnw Lek--KdvV grarg SPC4_CANFA : 133- 138: qgqhw Lek--Kd-V vgrar SPC4_CANFA : 133- 139: qgqhw Lek--KdvV grarg SPC4_RAT : 133- 138: qgqhw Lek--Kd-V vgrar SPC4_RAT : 133- 139: qgqhw Lek--KdvV grarg YCSB_BACSU : 58- 63: dseri Lvd--Ka-V kwtgg YCSB_BACSU : 105- 112: mkndq LyindKk-V eepyl YCSB_BACSU : 117- 124: veepy Lkey-KqeV kesgv H 8: 11.0102 29( 17) G-x(1,2)-I-x(0,2)-V Occurences: 29(17) IMP1_YEAST : 67- 71: rgikm GdcI--V alkpt IMP1_YEAST : 116- 121: deerf GtyIk-V peghv IMP1_YEAST : 152- 155: mglim Gk-I--V aannf IMP2_YEAST : 117- 121: vnlpr Gh-Iw-V egdny IMP2_YEAST : 145- 151: sglvi GkaItiV wppsr LEPA_BACAM : 71- 74: sdfkr Gq-I--V vlnge LEPA_BACAM : 71- 75: sdfkr Gq-Iv-V lngen LEPC_BACCL : 138- 142: trvpp Gc-If-V lgdnr LEPP_BACSU : 17- 21: silew GkaI--V iavil LEPP_BACSU : 134- 138: ltgdf Gp-Ik-V pkdky LEPS_BACSU : 69- 72: gefdr Gd-I--V vlngd LEPS_BACSU : 69- 73: gefdr Gd-Iv-V lngdd LEP_BACAM : 77- 80: geier Gd-I--V iingd LEP_BACLI : 70- 73: gefkr Gd-I--V iidgd LEP_ECOLI : 98- 103: ptlli GdfIl-V ekfay LEP_ECOLI : 128- 131: ghpkr Gd-I--V vfkyp LEP_ECOLI : 128- 132: ghpkr Gd-Iv-V fkype LEP_HAEIN : 153- 157: ekpqr GdvI--V fkapq LEP_PSEFL : 98- 103: ptldv GdfIl-V nkfsy LEP_SALTY : 99- 104: ptlli GdfIl-V ekfay LEP_SALTY : 129- 132: ghpkr Gd-I--V vfkyp LEP_SALTY : 129- 133: ghpkr Gd-Iv-V fkype SC11_YEAST : 76- 82: vyeve GkqIpiV hrvlr SPC3_CANFA : 49- 52: lmiwk Gl-I--V ltgse SPC3_CANFA : 91- 94: dpira Ge-I--V vfkve SPC3_CANFA : 91- 95: dpira Ge-Iv-V fkveg SPC3_CANFA : 100- 106: vfkve GrdIpiV hrvik SPC4_CANFA : 26- 29: qvlnf Gm-I--V ssalm SPC4_CANFA : 80- 83: dpirv Ge-I--V vfrie SPC4_CANFA : 80- 84: dpirv Ge-Iv-V frieg SPC4_CANFA : 89- 95: vfrie GreIpiV hrvlk SPC4_RAT : 26- 29: qvlnf Gm-I--V ssalm SPC4_RAT : 80- 83: dpirv Ge-I--V vfrie SPC4_RAT : 80- 84: dpirv Ge-Iv-V frieg SPC4_RAT : 89- 95: vfrie GreIpiV hrvlk YCSB_BACSU : 72- 76: ggfhr GdiI--V ihdkk YCSB_BACSU : 72- 76: ggfhr Gd-Ii-V ihdkk I 9: 10.5102 25( 17) V-x(2,4)-V-x(0,2)-L Occurences: 25(17) IMP1_YEAST : 105- 109: tivny Vgd--V--L vdeer IMP2_YEAST : 88- 96: tnprk VyckrVkgL pfdti LEPA_BACAM : 25- 30: aiiia Vvla-V--L irnfl LEPA_BACAM : 26- 30: iiiav Vla--V--L irnfl LEPC_BACCL : 16- 24: rwpwf VavcvVatL rlfvf LEPC_BACCL : 18- 24: pwfva Vcv--VatL rlfvf LEPC_BACCL : 78- 84: kkedy Vkr--VigL pgdri LEPP_BACSU : 21- 26: wgkai Via--Vi-L allir LEPS_BACSU : 20- 25: wakai Viav-V--L allir LEPS_BACSU : 20- 25: wakai Via--Vv-L allir LEPS_BACSU : 20- 27: wakai Viav-VlaL lirnf LEP_BACAM : 89- 95: gdtsk Vhy--VkrL igkpg LEP_BACLI : 82- 88: gdekn Vhy--VkrL iglpg LEP_ECOLI : 66- 70: etgas Vfp--V--L aivli LEP_ECOLI : 69- 74: asvfp Vlai-V--L ivrsf LEP_HAEIN : 16- 20: avgfg Vwk--V--L dyfql LEP_HAEIN : 94- 100: sslfp Vlav-Vf-L vrsfl LEP_HAEIN : 94- 100: sslfp Vla--VvfL vrsfl LEP_HAEIN : 258- 263: tekgd Vthn-V--L iseyr LEP_PSEFL : 10- 18: fplll ViavaVcgL lalld LEP_PSEFL : 69- 74: ksffp Vlfi-V--L vlrsf LEP_PSEFL : 69- 76: ksffp Vlfi-VlvL rsflv LEP_SALTY : 67- 71: etgas Vfp--V--L aivli LEP_SALTY : 70- 75: asvfp Vlai-V--L ivrsf SC11_YEAST : 82- 86: kqipi Vhr--V--L rqhnn SPC3_CANFA : 180- 186: yalla VmgayV--L lkres SPC3_CANFA : 180- 187: yalla VmgayVl-L kres SPC4_CANFA : 95- 99: reipi Vhr--V--L kihek SPC4_RAT : 95- 99: reipi Vhr--V--L kihek YCSB_BACSU : 124- 131: eykqe VkesgVt-L tgdfe J 10: 10.5102 23( 17) R-x(0,2)-G-x(1,3)-I Occurences: 23(17) IMP1_YEAST : 114- 119: lvdee Rf-Gty-I kvpeg IMP2_YEAST : 116- 119: qvnlp R--Gh--I wvegd LEPA_BACAM : 70- 73: isdfk R--Gq--I vvlng LEPC_BACCL : 154- 161: sswds RhfGfvkI nqivg LEPP_BACSU : 69- 72: tgnfk R--Gd--I iilng LEPP_BACSU : 69- 73: tgnfk R--Gdi-I ilngk LEPP_BACSU : 69- 74: tgnfk R--GdiiI lngke LEPS_BACSU : 68- 71: igefd R--Gd--I vvlng LEP_BACAM : 76- 79: igeie R--Gd--I viing LEP_BACAM : 76- 81: igeie R--GdivI ingdt LEP_BACAM : 164- 170: nsmds Rn-GlglI aenri LEP_BACLI : 69- 72: vgefk R--Gd--I viidg LEP_BACLI : 69- 74: vgefk R--GdivI idgde LEP_BACLI : 157- 163: rsmds Rn-GlglI dkkrv LEP_ECOLI : 127- 130: nghpk R--Gd--I vvfky LEP_ECOLI : 318- 322: glrls Ri-Gg--I h LEP_HAEIN : 152- 156: gekpq R--Gdv-I vfkap LEP_PSEFL : 279- 283: lpnfs Rv-Gl--I k LEP_SALTY : 128- 131: tghpk R--Gd--I vvfky LEP_SALTY : 319- 323: gvrls Ri-Gg--I h SC11_YEAST : 51- 54: epafq R--Gd--I lflwn SPC3_CANFA : 89- 93: redpi Ra-Ge--I vvfkv SPC4_CANFA : 78- 82: vedpi Rv-Ge--I vvfri SPC4_CANFA : 86- 92: eivvf RieGre-I pivhr SPC4_RAT : 78- 82: vedpi Rv-Ge--I vvfri SPC4_RAT : 86- 92: eivvf RieGre-I pivhr YCSB_BACSU : 71- 74: tggfh R--Gd--I ivihd YCSB_BACSU : 71- 75: tggfh R--Gdi-I vihdk K 11: 10.5102 38( 17) V-x(0,2)-V-x(0,2)-L Occurences: 38(17) IMP1_YEAST : 52- 55: atndy Vh-V--L knfqn IMP1_YEAST : 105- 109: tivny VgdV--L vdeer IMP2_YEAST : 21- 24: iaisw Vp-V--L ltinn IMP2_YEAST : 21- 25: iaisw Vp-Vl-L tinnn LEPA_BACAM : 25- 27: aiiia V--V--L avlir LEPA_BACAM : 26- 30: iiiav VlaV--L irnfl LEPA_BACAM : 74- 76: krgqi V--V--L ngene LEPC_BACCL : 18- 24: pwfva VcvVatL rlfvf LEPC_BACCL : 20- 24: fvavc V--VatL rlfvf LEPC_BACCL : 78- 84: kkedy VkrVigL pgdri LEPP_BACSU : 21- 26: wgkai ViaVi-L allir LEPS_BACSU : 20- 25: wakai ViaVv-L allir LEPS_BACSU : 23- 25: aivia V--V--L allir LEPS_BACSU : 23- 27: aivia V--VlaL lirnf LEPS_BACSU : 72- 74: drgdi V--V--L ngddv LEP_BACAM : 89- 95: gdtsk VhyVkrL igkpg LEP_BACLI : 24- 26: aiiia V--V--L allir LEP_BACLI : 24- 28: aiiia V--VlaL liraf LEP_BACLI : 82- 88: gdekn VhyVkrL iglpg LEP_BACLI : 125- 129: keaea Vg-Vk-L tgdfg LEP_ECOLI : 66- 70: etgas VfpV--L aivli LEP_HAEIN : 16- 20: avgfg VwkV--L dyfql LEP_HAEIN : 50- 52: cyhrf V--V--L pkrhr LEP_HAEIN : 94- 100: sslfp VlaVvfL vrsfl LEP_HAEIN : 97- 100: fpvla V--Vf-L vrsfl LEP_PSEFL : 13- 18: llvia Va-VcgL lalld LEP_PSEFL : 73- 76: pvlfi Vl-V--L rsflv LEP_PSEFL : 147- 150: nyikr V--Vg-L pgdvv LEP_SALTY : 67- 71: etgas VfpV--L aivli SC11_YEAST : 38- 41: saspi Vv-V--L sgsme SC11_YEAST : 38- 41: saspi V--Vv-L sgsme SC11_YEAST : 39- 41: aspiv V--V--L sgsme SC11_YEAST : 82- 86: kqipi VhrV--L rqhnn SPC3_CANFA : 61- 64: sespi Vv-V--L sgsme SPC3_CANFA : 61- 64: sespi V--Vv-L sgsme SPC3_CANFA : 62- 64: espiv V--V--L sgsme SPC4_CANFA : 50- 53: sespi Vv-V--L sgsme SPC4_CANFA : 50- 53: sespi V--Vv-L sgsme SPC4_CANFA : 51- 53: espiv V--V--L sgsme SPC4_CANFA : 95- 99: reipi VhrV--L kihek SPC4_RAT : 50- 53: sespi Vv-V--L sgsme SPC4_RAT : 50- 53: sespi V--Vv-L sgsme SPC4_RAT : 51- 53: espiv V--V--L sgsme SPC4_RAT : 95- 99: reipi VhrV--L kihek YCSB_BACSU : 18- 20: kikti V--V--L siimi L 12: 10.5102 25( 17) P-x(3,5)-V-x(0,2)-G Occurences: 25(17) IMP1_YEAST : 122- 130: tyikv PeghvwVt-G dnlsh IMP2_YEAST : 115- 123: pqvnl PrghiwVe-G dnyfh IMP2_YEAST : 137- 145: sntfg PissglVi-G kaiti LEPA_BACAM : 138- 146: gpvkv PddkyfVm-G dnrrn LEPC_BACCL : 136- 144: gktrv PpgcifVl-G dnrls LEPC_BACCL : 137- 144: ktrvp Pgcif-Vl-G dnrls LEPP_BACSU : 139- 147: gpikv PkdkyfVm-G dnrqe LEPS_BACSU : 137- 145: gpvkv PdnkyfVm-G dnrrn LEP_BACAM : 146- 154: gpvkv PkgkyfVm-G dnrln LEP_BACLI : 139- 147: gpvkv PegkyfVm-G dnrqr LEP_ECOLI : 241- 248: riltv PiaqdqV--G myyqq LEP_ECOLI : 288- 294: ywgfv Peanl-V--G ratai LEP_HAEIN : 289- 297: aewlv PegqyfVm-G dhrdh LEP_HAEIN : 313- 319: fwgfv Pekni-V--G katyi LEP_PSEFL : 93- 98: sgsmk Ptld--V--G dfilv LEP_PSEFL : 210- 219: ryram PdgqwkVpaG hyfmm LEP_PSEFL : 251- 257: llgmv Pdeni-V--G kafav LEP_PSEFL : 275- 281: klshl Pnfsr-V--G lik LEP_SALTY : 258- 267: qqpgq PlatwvVppG qyfmm LEP_SALTY : 289- 295: ywgfv Peanl-V--G kavai SC11_YEAST : 36- 43: tnsas Pivv--VlsG smepa SPC3_CANFA : 59- 66: tgses Pivv--VlsG smepa SPC4_CANFA : 48- 55: tgses Pivv--VlsG smepa SPC4_RAT : 48- 55: tgses Pivv--VlsG smepa YCSB_BACSU : 140- 148: fevev PsgkyfVm-G dnrln M 13: 10.2489 22( 17) I-x(3)-V-[AGILV] Occurences: 22(17) IMP1_YEAST : 101- 106: vdpst IvnyVG dvlvd IMP2_YEAST : 27- 32: pvllt InnnVV hiaqv LEPA_BACAM : 21- 26: dwaka IiiaVV lavli LEPA_BACAM : 22- 27: wakai IiavVL avlir LEPC_BACCL : 161- 166: fgfvk InqiVG kvdfr LEPP_BACSU : 20- 25: ewgka IviaVI lalli LEPS_BACSU : 19- 24: ewaka IviaVV lalli LEP_BACAM : 27- 32: ewgka IiiaVA lalli LEP_BACLI : 20- 25: ewvka IiiaVV lalli LEP_BACLI : 21- 26: wvkai IiavVL allir LEP_ECOLI : 144- 149: pkldy IkraVG lpgdk LEP_HAEIN : 8- 13: nlffv IllaVG fgvwk LEP_HAEIN : 195- 200: sgvdy IkriVG kggdr LEP_PSEFL : 110- 115: kfsyg IrlpVI dkkvi LEP_PSEFL : 115- 120: irlpv IdkkVI evgdp LEP_PSEFL : 144- 149: pnvny IkrvVG lpgdv LEP_SALTY : 145- 150: pkldy IkraVG lpgdk SC11_YEAST : 81- 86: gkqip IvhrVL rqhnn SPC3_CANFA : 105- 110: grdip IvhrVI kvhek SPC4_CANFA : 94- 99: greip IvhrVL kihek SPC4_RAT : 94- 99: greip IvhrVL kihek YCSB_BACSU : 14- 19: kkkrk IktiVV lsiim N 14: 9.9893 19( 17) Y-[AGILPV]-K Occurences: 19(17) IMP1_YEAST : 118- 120: erfgt YIK vpegh IMP2_YEAST : 107- 109: dtkfp YPK pqvnl LEPA_BACAM : 83- 85: geneh YVK riigl LEPC_BACCL : 77- 79: nkked YVK rvigl LEPP_BACSU : 84- 86: eksth YVK rligl LEPS_BACSU : 81- 83: gddvh YVK riigl LEP_BACAM : 91- 93: tskvh YVK rligk LEP_BACLI : 84- 86: eknvh YVK rligl LEP_ECOLI : 143- 145: dpkld YIK ravgl LEP_HAEIN : 194- 196: msgvd YIK rivgk LEP_HAEIN : 219- 221: tlkvv YGK egkpc LEP_PSEFL : 62- 64: pllve YGK sffpv LEP_PSEFL : 143- 145: dpnvn YIK rvvgl LEP_SALTY : 144- 146: dpkld YIK ravgl SC11_YEAST : 149- 151: isenk YAK fallg SPC3_CANFA : 170- 172: iimnd YPK fkyal SPC4_CANFA : 159- 161: ilmnd YPK fkyav SPC4_RAT : 159- 161: ilmnd YPK fsyav YCSB_BACSU : 116- 118: kveep YLK eykqe O 15: 8.3401 37( 17) G-L Occurences: 37(17) IMP1_YEAST : 148- 149: nalpm GL imgki IMP2_YEAST : 95- 96: ckrvk GL pfdti IMP2_YEAST : 141- 142: gpiss GL vigka LEPA_BACAM : 89- 90: vkrii GL pgdtv LEPA_BACAM : 158- 159: mdsrn GL glftk LEPA_BACAM : 160- 161: srngl GL ftkkq LEPC_BACCL : 83- 84: vkrvi GL pgdri LEPP_BACSU : 90- 91: vkrli GL pgdtv LEPP_BACSU : 159- 160: mdsrn GL glftk LEPP_BACSU : 161- 162: srngl GL ftkdd LEPS_BACSU : 87- 88: vkrii GL pgdtv LEPS_BACSU : 157- 158: mdsrn GL glftk LEPS_BACSU : 159- 160: srngl GL ftkkq LEP_BACAM : 166- 167: mdsrn GL gliae LEP_BACAM : 168- 169: srngl GL iaenr LEP_BACLI : 90- 91: vkrli GL pgdtv LEP_BACLI : 159- 160: mdsrn GL glidk LEP_BACLI : 161- 162: srngl GL idkkr LEP_ECOLI : 149- 150: ikrav GL pgdkv LEP_ECOLI : 313- 314: gewpt GL rlsri LEP_HAEIN : 169- 170: alirt GL gatra LEP_PSEFL : 17- 18: avavc GL lalld LEP_PSEFL : 149- 150: ikrvv GL pgdvv LEP_PSEFL : 281- 282: nfsrv GL ik LEP_SALTY : 150- 151: ikrav GL pgdki SC11_YEAST : 26- 27: ymfwq GL aiatn SC11_YEAST : 159- 160: llgml GL sallg SPC3_CANFA : 14- 15: hlpas GL difgd SPC3_CANFA : 49- 50: lmiwk GL ivltg SPC3_CANFA : 135- 136: evddr GL ykegq SPC4_CANFA : 38- 39: lmiwk GL mvitg SPC4_CANFA : 124- 125: avddr GL ykqgq SPC4_CANFA : 171- 172: vlfll GL fvlvh SPC4_RAT : 38- 39: lmiwk GL mlitg SPC4_RAT : 124- 125: avddr GL ykqgq SPC4_RAT : 171- 172: vlfll GL fvlvh YCSB_BACSU : 92- 93: vkrli GL pgdsi P 16: 8.3401 36( 17) V-x-G Occurences: 36(17) IMP1_YEAST : 86- 88: rickr VtG mpgdl IMP1_YEAST : 128- 130: eghvw VtG dnlsh IMP2_YEAST : 37- 39: vhiaq VkG tsmqp IMP2_YEAST : 93- 95: vyckr VkG lpfdt IMP2_YEAST : 121- 123: rghiw VeG dnyfh IMP2_YEAST : 143- 145: issgl ViG kaiti LEPA_BACAM : 41- 43: fapyv VdG esmep LEPA_BACAM : 144- 146: ddkyf VmG dnrrn LEPC_BACCL : 34- 36: fsnyv VeG ksmmp LEPC_BACCL : 81- 83: dyvkr ViG lpgdr LEPC_BACCL : 98- 100: ndily VnG kkvde LEPC_BACCL : 129- 131: ftlee VtG ktrvp LEPC_BACCL : 142- 144: pgcif VlG dnrls LEPP_BACSU : 40- 42: fepyv VeG ksmdp LEPP_BACSU : 145- 147: kdkyf VmG dnrqe LEPS_BACSU : 39- 41: fapyv VdG dsmyp LEPS_BACSU : 143- 145: dnkyf VmG dnrrn LEP_BACAM : 47- 49: fepyl VeG ssmyp LEP_BACAM : 152- 154: kgkyf VmG dnrln LEP_BACLI : 40- 42: fepyl VeG tsmdp LEP_BACLI : 145- 147: egkyf VmG dnrqr LEP_BACLI : 168- 170: idkkr VaG tsqfv LEP_ECOLI : 15- 17: viatl VtG ilwcv LEP_HAEIN : 218- 220: ktlkv VyG kegkp LEP_HAEIN : 295- 297: egqyf VmG dhrdh LEP_PSEFL : 15- 17: viava VcG llall LEP_PSEFL : 147- 149: nyikr VvG lpgdv LEP_SALTY : 15- 17: viatl VtG ilwcv SC11_YEAST : 74- 76: vvvye VeG kqipi SC11_YEAST : 130- 132: eivgt VkG yfpql SPC3_CANFA : 98- 100: ivvfk VeG rdipi SPC3_CANFA : 149- 151: lekkd VvG rargf SPC3_CANFA : 180- 182: yalla VmG ayvll SPC4_CANFA : 138- 140: lekkd VvG rargf SPC4_RAT : 138- 140: lekkd VvG rargf YCSB_BACSU : 146- 148: sgkyf VmG dnrln Q 17: 8.3401 34( 17) V-x(4)-G Occurences: 34(17) IMP1_YEAST : 86- 91: rickr VtgmpG dlvlv IMP2_YEAST : 112- 117: ypkpq VnlprG hiwve LEPA_BACAM : 84- 89: enehy VkriiG lpgdt LEPC_BACCL : 78- 83: kkedy VkrviG lpgdr LEPC_BACCL : 81- 86: dyvkr ViglpG driay LEPP_BACSU : 85- 90: ksthy VkrliG lpgdt LEPS_BACSU : 82- 87: ddvhy VkriiG lpgdt LEP_BACAM : 92- 97: skvhy VkrliG kpget LEP_BACAM : 143- 148: gdfgp VkvpkG kyfvm LEP_BACLI : 85- 90: knvhy VkrliG lpgdt LEP_BACLI : 136- 141: gdfgp VkvpeG kyfvm LEP_ECOLI : 53- 58: atlkk VapkpG wletg LEP_HAEIN : 218- 223: ktlkv VygkeG kpcei LEP_PSEFL : 147- 152: nyikr VvglpG dvvry LEP_SALTY : 54- 59: atlnk VapkpG wletg LEP_SALTY : 165- 170: pvake VtiqpG cssgq SC11_YEAST : 38- 43: saspi VvvlsG smepa SC11_YEAST : 71- 76: vgdvv VyeveG kqipi SC11_YEAST : 127- 132: kskei VgtvkG yfpql SPC3_CANFA : 61- 66: sespi VvvlsG smepa SPC3_CANFA : 95- 100: ageiv VfkveG rdipi SPC3_CANFA : 150- 155: ekkdv VgrarG flpyv SPC4_CANFA : 50- 55: sespi VvvlsG smepa SPC4_CANFA : 84- 89: vgeiv VfrieG reipi SPC4_CANFA : 139- 144: ekkdv VgrarG fvpyi SPC4_CANFA : 166- 171: kfkya VlfllG lfvlv SPC4_RAT : 50- 55: sespi VvvlsG smepa SPC4_RAT : 84- 89: vgeiv VfrieG reipi SPC4_RAT : 139- 144: ekkdv VgrarG fvpyi SPC4_RAT : 166- 171: kfsya VlfllG lfvlv YCSB_BACSU : 63- 68: lvdka VkwtgG fhrgd YCSB_BACSU : 87- 92: sgrsf VkrliG lpgds YCSB_BACSU : 137- 142: tgdfe VevpsG kyfvm YCSB_BACSU : 176- 181: gtesl VfypfG emrqa R 18: 8.3401 46( 17) I-V Occurences: 46(17) IMP1_YEAST : 70- 71: kmgdc IV alkpt IMP1_YEAST : 101- 102: vdpst IV nyvgd IMP1_YEAST : 154- 155: limgk IV aannf IMP2_YEAST : 150- 151: gkait IV wppsr LEPA_BACAM : 73- 74: fkrgq IV vlnge LEPC_BACCL : 50- 51: sgnll IV nklsy LEPC_BACCL : 67- 68: rrfdi IV fhank LEPC_BACCL : 164- 165: vkinq IV gkvdf LEPP_BACSU : 20- 21: ewgka IV iavil LEPS_BACSU : 19- 20: ewaka IV iavvl LEPS_BACSU : 71- 72: fdrgd IV vlngd LEP_BACAM : 79- 80: iergd IV iingd LEP_BACAM : 175- 176: iaenr IV gtskf LEP_BACLI : 72- 73: fkrgd IV iidgd LEP_ECOLI : 72- 73: fpvla IV livrs LEP_ECOLI : 75- 76: laivl IV rsfiy LEP_ECOLI : 130- 131: pkrgd IV vfkyp LEP_ECOLI : 262- 263: qlatw IV ppgqy LEP_HAEIN : 156- 157: qrgdv IV fkapq LEP_HAEIN : 198- 199: dyikr IV gkggd LEP_HAEIN : 317- 318: vpekn IV gkaty LEP_PSEFL : 72- 73: fpvlf IV lvlrs LEP_PSEFL : 255- 256: vpden IV gkafa LEP_SALTY : 73- 74: fpvla IV livrs LEP_SALTY : 76- 77: laivl IV rsfly LEP_SALTY : 131- 132: pkrgd IV vfkyp SC11_YEAST : 37- 38: nsasp IV vvlsg SC11_YEAST : 81- 82: gkqip IV hrvlr SC11_YEAST : 126- 127: nkske IV gtvkg SPC3_CANFA : 39- 40: lnfam IV ssalm SPC3_CANFA : 51- 52: iwkgl IV ltgse SPC3_CANFA : 60- 61: gsesp IV vvlsg SPC3_CANFA : 93- 94: irage IV vfkve SPC3_CANFA : 105- 106: grdip IV hrvik SPC4_CANFA : 28- 29: lnfgm IV ssalm SPC4_CANFA : 49- 50: gsesp IV vvlsg SPC4_CANFA : 82- 83: irvge IV vfrie SPC4_CANFA : 94- 95: greip IV hrvlk SPC4_CANFA : 151- 152: vpyig IV tilmn SPC4_RAT : 28- 29: lnfgm IV ssalm SPC4_RAT : 49- 50: gsesp IV vvlsg SPC4_RAT : 82- 83: irvge IV vfrie SPC4_RAT : 94- 95: greip IV hrvlk SPC4_RAT : 151- 152: vpyig IV tilmn YCSB_BACSU : 17- 18: rkikt IV vlsii YCSB_BACSU : 75- 76: hrgdi IV ihdkk S 19: 8.3401 33( 17) L-x(3)-K Occurences: 33(17) IMP1_YEAST : 149- 153: alpmg LimgK ivaan IMP2_YEAST : 142- 146: pissg LvigK aitiv LEPA_BACAM : 15- 19: kksav LdwaK aiiia LEPA_BACAM : 114- 118: vsepy LaanK kkakq LEPA_BACAM : 161- 165: rnglg LftkK qiagt LEPC_BACCL : 49- 53: esgnl LivnK lsydi LEPC_BACCL : 108- 112: vdepy LrpyK qklld LEPP_BACSU : 14- 18: kkssi LewgK aivia LEPP_BACSU : 55- 59: vdser LfvnK tvkyt LEPP_BACSU : 115- 119: vkepy LsynK enakk LEPS_BACSU : 13- 17: kkksi LewaK aivia LEPS_BACSU : 112- 116: vdepy LaanK krakq LEPS_BACSU : 160- 164: rnglg LftkK qiagt LEP_BACAM : 62- 66: hdger LfvnK svnyi LEP_BACAM : 122- 126: iaepy LasnK keakk LEP_BACLI : 55- 59: hdger LfvyK tvryv LEP_BACLI : 162- 166: rnglg LidkK rvagt LEP_ECOLI : 141- 145: pedpk LdyiK ravgl LEP_ECOLI : 150- 154: kravg LpgdK vtydp LEP_ECOLI : 223- 227: engir LserK etlgd LEP_HAEIN : 126- 130: rvgdf LvvnK yaygv LEP_PSEFL : 187- 191: lgsae LyqeK lgave LEP_SALTY : 142- 146: pedpk LdyiK ravgl LEP_SALTY : 151- 155: kravg LpgdK itydp LEP_SALTY : 214- 218: ffevp LnetK engir LEP_SALTY : 224- 228: engir LterK etlgd SC11_YEAST : 112- 116: gndis LyanK kiyln SC11_YEAST : 120- 124: nkkiy LnksK eivgt SPC3_CANFA : 44- 48: ivssa LmiwK glivl SPC4_CANFA : 33- 37: ivssa LmiwK glmvi SPC4_RAT : 33- 37: ivssa LmiwK glmli YCSB_BACSU : 34- 38: iftir LvfyK pflie YCSB_BACSU : 117- 121: veepy LkeyK qevke T 20: 8.3401 35( 17) G-x(3)-V Occurences: 35(17) IMP1_YEAST : 67- 71: rgikm GdciV alkpt IMP1_YEAST : 106- 110: ivnyv GdvlV deerf IMP1_YEAST : 124- 128: ikvpe GhvwV tgdnl IMP2_YEAST : 117- 121: vnlpr GhiwV egdny LEPA_BACAM : 71- 75: sdfkr GqivV lngen LEPA_BACAM : 133- 137: ltddf GpvkV pddky LEPC_BACCL : 131- 135: leevt GktrV ppgci LEPC_BACCL : 138- 142: trvpp GcifV lgdnr LEPP_BACSU : 17- 21: silew GkaiV iavil LEPP_BACSU : 134- 138: ltgdf GpikV pkdky LEPS_BACSU : 69- 73: gefdr GdivV lngdd LEPS_BACSU : 132- 136: ltddf GpvkV pdnky LEP_BACAM : 141- 145: ltgdf GpvkV pkgky LEP_BACAM : 148- 152: vkvpk GkyfV mgdnr LEP_BACLI : 134- 138: ltgdf GpvkV pegky LEP_BACLI : 141- 145: vkvpe GkyfV mgdnr LEP_ECOLI : 128- 132: ghpkr GdivV fkype LEP_ECOLI : 207- 211: geats GffeV pknet LEP_HAEIN : 15- 19: lavgf GvwkV ldyfq LEP_HAEIN : 123- 127: stlrv GdflV vnkya LEP_HAEIN : 153- 157: ekpqr GdviV fkapq LEP_HAEIN : 202- 206: rivgk GgdrV ifdve LEP_HAEIN : 291- 295: wlvpe GqyfV mgdhr LEP_PSEFL : 128- 132: gdpqr GdvmV fryps LEP_PSEFL : 212- 216: rampd GqwkV paghy LEP_SALTY : 129- 133: ghpkr GdivV fkype LEP_SALTY : 208- 212: geats GffeV plnet SC11_YEAST : 67- 71: tfnqv GdvvV yeveg SPC3_CANFA : 91- 95: dpira GeivV fkveg SPC4_CANFA : 80- 84: dpirv GeivV frieg SPC4_RAT : 80- 84: dpirv GeivV frieg YCSB_BACSU : 72- 76: ggfhr GdiiV ihdkk YCSB_BACSU : 83- 87: hdkks GrsfV krlig YCSB_BACSU : 133- 137: gvtlt GdfeV evpsg YCSB_BACSU : 142- 146: vevps GkyfV mgdnr Number of patterns evaluated by Pratt:641 Total running time: 1 seconds