------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file SPASE_I_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SPASE_I_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IMP1_YEAST 190 IMP2_YEAST 177 LEPA_BACAM 185 LEPC_BACCL 182 LEPP_BACSU 186 LEPS_BACSU 184 LEP_BACAM 193 LEP_BACLI 186 LEP_ECOLI 323 LEP_HAEIN 349 LEP_PSEFL 284 LEP_SALTY 324 YCSB_BACSU 187 Pratt run started at Thu Feb 6 21:14:37 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 13( 13) G-D-x(4)-S-x-D-S 2: 20.3503 13( 13) G-x(0,1)-S-M-x(2)-T-L 3: 16.6802 13( 13) D-x(4)-S-x-D-S 4: 16.6802 13( 13) S-M-x(2)-T-L 5: 16.1802 13( 13) G-x(4,5)-S-x(2)-S-R 6: 15.1802 13( 13) N-x(3)-S-x(1,2)-D-x(0,2)-S 7: 15.1802 13( 13) D-N-x(1,3)-S-x(1,2)-D 8: 12.5102 13( 13) S-x-D-S 9: 12.5102 14( 13) K-R-x(2)-G 10: 12.5102 13( 13) S-x(2)-S-R 11: 12.5102 13( 13) M-x(2)-T-L 12: 12.5102 17( 13) S-x(2)-P-x-L 13: 12.0102 13( 13) G-x(5)-S-x(2,3)-R 14: 12.0102 14( 13) S-x(3)-T-x(0,1)-L 15: 12.0102 18( 13) K-x(5)-P-x(0,1)-G 16: 12.0102 15( 13) R-x(2)-G-x(1,2)-P 17: 12.0102 14( 13) N-x(3,4)-S-x-D 18: 12.0102 19( 13) G-x(0,1)-S-x(4)-L 19: 12.0102 13( 13) F-x(2)-G-x(2,3)-R 20: 11.5102 13( 13) D-x(3,4)-S-x(2,3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.1966 13( 13) G-x(0,1)-S-M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] B 2: 26.5266 13( 13) S-M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] C 3: 24.3690 13( 13) K-R-[AILV]-x-G-x-[GP]-x-[DE]-x-[IV] D 4: 24.0203 13( 13) G-D-x(4)-S-x-D-S-[NR] E 5: 22.3565 13( 13) M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] F 6: 19.8503 13( 13) D-x(4)-S-x-D-S-[NR] G 7: 18.5193 15( 13) S-[LMV]-x-P-[TV]-L H 8: 16.1802 13( 13) G-x(4,5)-S-x(2)-S-R I 9: 15.6802 13( 13) S-x-D-S-[NR] J 10: 15.2350 13( 13) R-x(2)-G-x(1,2)-P-x(3)-[IV] K 11: 15.1891 13( 13) G-[DT]-x(4)-S-x(2,3)-R L 12: 15.1802 13( 13) N-x(3)-S-x(1,2)-D-x(0,2)-S M 13: 15.1802 13( 13) D-N-x(1,3)-S-x(1,2)-D N 14: 14.6802 15( 13) K-x(3)-[EGN]-x-P-x(0,1)-G O 15: 14.6351 14( 13) N-x(3,4)-S-x-D-[DNS] P 16: 12.5102 13( 13) S-x(2)-S-R Q 17: 12.0102 14( 13) S-x(3)-T-x(0,1)-L R 18: 12.0102 19( 13) G-x(0,1)-S-x(4)-L S 19: 12.0102 13( 13) F-x(2)-G-x(2,3)-R T 20: 11.5102 13( 13) D-x(3,4)-S-x(2,3)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.1966 13( 13) G-x(0,1)-S-M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] Occurences: 13(13) IMP1_YEAST : 38- 57: ftetr GeSMlPTLsatNdyVhvlkN fqngr IMP2_YEAST : 39- 58: iaqvk GtSMqPTLnpqTetLatdwV llwkf LEPA_BACAM : 43- 62: pyvvd GeSMePTLhdrEriFvnmtV kyisd LEPC_BACCL : 36- 55: nyvve GkSMmPTLesgNllIvnklS ydigp LEPP_BACSU : 42- 61: pyvve GkSMdPTLvdsErlFvnktV kytgn LEPS_BACSU : 41- 60: pyvvd GdSMyPTLhnrErvFvnmtV kyige LEP_BACAM : 49- 68: pylve GsSMyPTLhdgErlFvnksV nyige LEP_BACLI : 42- 61: pylve GtSMdPTLhdgErlFvyktV ryvge LEP_ECOLI : 89- 107: fqips G-SMmPTLligDfiLvekfA ygikd LEP_HAEIN : 114- 132: fqips G-SMeSTLrvgDflVvnkyA ygvkd LEP_PSEFL : 89- 107: fqips G-SMkPTLdvgDfiLvnkfS ygirl LEP_SALTY : 90- 108: fqips G-SMmPTLligDfiLvekfA ygikd YCSB_BACSU : 44- 63: pflie GsSMaPTLkdsEriLvdkaV kwtgg B 2: 26.5266 13( 13) S-M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] Occurences: 13(13) IMP1_YEAST : 40- 57: etrge SMlPTLsatNdyVhvlkN fqngr IMP2_YEAST : 41- 58: qvkgt SMqPTLnpqTetLatdwV llwkf LEPA_BACAM : 45- 62: vvdge SMePTLhdrEriFvnmtV kyisd LEPC_BACCL : 38- 55: vvegk SMmPTLesgNllIvnklS ydigp LEPP_BACSU : 44- 61: vvegk SMdPTLvdsErlFvnktV kytgn LEPS_BACSU : 43- 60: vvdgd SMyPTLhnrErvFvnmtV kyige LEP_BACAM : 51- 68: lvegs SMyPTLhdgErlFvnksV nyige LEP_BACLI : 44- 61: lvegt SMdPTLhdgErlFvyktV ryvge LEP_ECOLI : 90- 107: qipsg SMmPTLligDfiLvekfA ygikd LEP_HAEIN : 115- 132: qipsg SMeSTLrvgDflVvnkyA ygvkd LEP_PSEFL : 90- 107: qipsg SMkPTLdvgDfiLvnkfS ygirl LEP_SALTY : 91- 108: qipsg SMmPTLligDfiLvekfA ygikd YCSB_BACSU : 46- 63: liegs SMaPTLkdsEriLvdkaV kwtgg C 3: 24.3690 13( 13) K-R-[AILV]-x-G-x-[GP]-x-[DE]-x-[IV] Occurences: 13(13) IMP1_YEAST : 84- 94: nhric KRVtGmPgDlV lvdps IMP2_YEAST : 91- 101: rkvyc KRVkGlPfDtI dtkfp LEPA_BACAM : 85- 95: nehyv KRIiGlPgDtV qmknd LEPC_BACCL : 79- 89: kedyv KRViGlPgDrI ayknd LEPP_BACSU : 86- 96: sthyv KRLiGlPgDtV emknd LEPS_BACSU : 83- 93: dvhyv KRIiGlPgDtV emknd LEP_BACAM : 93- 103: kvhyv KRLiGkPgEtV emknd LEP_BACLI : 86- 96: nvhyv KRLiGlPgDtV qmkdd LEP_ECOLI : 145- 155: kldyi KRAvGlPgDkV tydpv LEP_HAEIN : 196- 206: gvdyi KRIvGkGgDrV ifdve LEP_PSEFL : 145- 155: nvnyi KRVvGlPgDvV rytsd LEP_SALTY : 146- 156: kldyi KRAvGlPgDkI tydpv YCSB_BACSU : 88- 98: grsfv KRLiGlPgDsI kmknd D 4: 24.0203 13( 13) G-D-x(4)-S-x-D-S-[NR] Occurences: 13(13) IMP1_YEAST : 130- 140: hvwvt GDnlshSlDSR tynal IMP2_YEAST : 123- 133: hiwve GDnyfhSiDSN tfgpi LEPA_BACAM : 146- 156: kyfvm GDnrrnSmDSR nglgl LEPC_BACCL : 144- 154: cifvl GDnrlsSwDSR hfgfv LEPP_BACSU : 147- 157: kyfvm GDnrqeSmDSR nglgl LEPS_BACSU : 145- 155: kyfvm GDnrrnSmDSR nglgl LEP_BACAM : 154- 164: kyfvm GDnrlnSmDSR nglgl LEP_BACLI : 147- 157: kyfvm GDnrqrSmDSR nglgl LEP_ECOLI : 272- 282: qyfmm GDnrdnSaDSR ywgfv LEP_HAEIN : 297- 307: qyfvm GDhrdhSdDSR fwgfv LEP_PSEFL : 225- 235: hyfmm GDnrdnSnDSR ywddp LEP_SALTY : 273- 283: qyfmm GDnrdnSaDSR ywgfv YCSB_BACSU : 148- 158: kyfvm GDnrlnSlDSR ngmgm E 5: 22.3565 13( 13) M-x-[PS]-T-L-x(3)-[DENT]-x(2)-[FILV]-x(4)-[ANSV] Occurences: 13(13) IMP1_YEAST : 41- 57: trges MlPTLsatNdyVhvlkN fqngr IMP2_YEAST : 42- 58: vkgts MqPTLnpqTetLatdwV llwkf LEPA_BACAM : 46- 62: vdges MePTLhdrEriFvnmtV kyisd LEPC_BACCL : 39- 55: vegks MmPTLesgNllIvnklS ydigp LEPP_BACSU : 45- 61: vegks MdPTLvdsErlFvnktV kytgn LEPS_BACSU : 44- 60: vdgds MyPTLhnrErvFvnmtV kyige LEP_BACAM : 52- 68: vegss MyPTLhdgErlFvnksV nyige LEP_BACLI : 45- 61: vegts MdPTLhdgErlFvyktV ryvge LEP_ECOLI : 91- 107: ipsgs MmPTLligDfiLvekfA ygikd LEP_HAEIN : 116- 132: ipsgs MeSTLrvgDflVvnkyA ygvkd LEP_PSEFL : 91- 107: ipsgs MkPTLdvgDfiLvnkfS ygirl LEP_SALTY : 92- 108: ipsgs MmPTLligDfiLvekfA ygikd YCSB_BACSU : 47- 63: iegss MaPTLkdsEriLvdkaV kwtgg F 6: 19.8503 13( 13) D-x(4)-S-x-D-S-[NR] Occurences: 13(13) IMP1_YEAST : 131- 140: vwvtg DnlshSlDSR tynal IMP2_YEAST : 124- 133: iwveg DnyfhSiDSN tfgpi LEPA_BACAM : 147- 156: yfvmg DnrrnSmDSR nglgl LEPC_BACCL : 145- 154: ifvlg DnrlsSwDSR hfgfv LEPP_BACSU : 148- 157: yfvmg DnrqeSmDSR nglgl LEPS_BACSU : 146- 155: yfvmg DnrrnSmDSR nglgl LEP_BACAM : 155- 164: yfvmg DnrlnSmDSR nglgl LEP_BACLI : 148- 157: yfvmg DnrqrSmDSR nglgl LEP_ECOLI : 273- 282: yfmmg DnrdnSaDSR ywgfv LEP_HAEIN : 298- 307: yfvmg DhrdhSdDSR fwgfv LEP_PSEFL : 226- 235: yfmmg DnrdnSnDSR ywddp LEP_SALTY : 274- 283: yfmmg DnrdnSaDSR ywgfv YCSB_BACSU : 149- 158: yfvmg DnrlnSlDSR ngmgm G 7: 18.5193 15( 13) S-[LMV]-x-P-[TV]-L Occurences: 15(13) IMP1_YEAST : 40- 45: etrge SMlPTL satnd IMP2_YEAST : 41- 46: qvkgt SMqPTL npqte LEPA_BACAM : 45- 50: vvdge SMePTL hdrer LEPC_BACCL : 38- 43: vvegk SMmPTL esgnl LEPP_BACSU : 44- 49: vvegk SMdPTL vdser LEPS_BACSU : 43- 48: vvdgd SMyPTL hnrer LEP_BACAM : 51- 56: lvegs SMyPTL hdger LEP_BACLI : 44- 49: lvegt SMdPTL hdger LEP_ECOLI : 65- 70: letga SVfPVL aivli LEP_ECOLI : 90- 95: qipsg SMmPTL ligdf LEP_HAEIN : 90- 95: sefls SLfPVL avvfl LEP_PSEFL : 90- 95: qipsg SMkPTL dvgdf LEP_SALTY : 66- 71: letga SVfPVL aivli LEP_SALTY : 91- 96: qipsg SMmPTL ligdf YCSB_BACSU : 46- 51: liegs SMaPTL kdser H 8: 16.1802 13( 13) G-x(4,5)-S-x(2)-S-R Occurences: 13(13) IMP1_YEAST : 130- 140: hvwvt GdnlshSldSR tynal IMP2_YEAST : 64- 73: llwkf Gvknp-SnlSR ddiil LEPA_BACAM : 146- 156: kyfvm GdnrrnSmdSR nglgl LEPC_BACCL : 144- 154: cifvl GdnrlsSwdSR hfgfv LEPP_BACSU : 147- 157: kyfvm GdnrqeSmdSR nglgl LEPS_BACSU : 145- 155: kyfvm GdnrrnSmdSR nglgl LEP_BACAM : 154- 164: kyfvm GdnrlnSmdSR nglgl LEP_BACLI : 147- 157: kyfvm GdnrqrSmdSR nglgl LEP_ECOLI : 272- 282: qyfmm GdnrdnSadSR ywgfv LEP_HAEIN : 297- 307: qyfvm GdhrdhSddSR fwgfv LEP_PSEFL : 225- 235: hyfmm GdnrdnSndSR ywddp LEP_SALTY : 273- 283: qyfmm GdnrdnSadSR ywgfv YCSB_BACSU : 148- 158: kyfvm GdnrlnSldSR ngmgm I 9: 15.6802 13( 13) S-x-D-S-[NR] Occurences: 13(13) IMP1_YEAST : 136- 140: dnlsh SlDSR tynal IMP2_YEAST : 129- 133: dnyfh SiDSN tfgpi LEPA_BACAM : 152- 156: dnrrn SmDSR nglgl LEPC_BACCL : 150- 154: dnrls SwDSR hfgfv LEPP_BACSU : 153- 157: dnrqe SmDSR nglgl LEPS_BACSU : 151- 155: dnrrn SmDSR nglgl LEP_BACAM : 160- 164: dnrln SmDSR nglgl LEP_BACLI : 153- 157: dnrqr SmDSR nglgl LEP_ECOLI : 278- 282: dnrdn SaDSR ywgfv LEP_HAEIN : 303- 307: dhrdh SdDSR fwgfv LEP_PSEFL : 231- 235: dnrdn SnDSR ywddp LEP_SALTY : 279- 283: dnrdn SaDSR ywgfv YCSB_BACSU : 154- 158: dnrln SlDSR ngmgm J 10: 15.2350 13( 13) R-x(2)-G-x(1,2)-P-x(3)-[IV] Occurences: 13(13) IMP1_YEAST : 85- 94: hrick RvtGm-PgdlV lvdps IMP2_YEAST : 92- 101: kvyck RvkGl-PfdtI dtkfp LEPA_BACAM : 86- 95: ehyvk RiiGl-PgdtV qmknd LEPC_BACCL : 80- 89: edyvk RviGl-PgdrI ayknd LEPP_BACSU : 87- 96: thyvk RliGl-PgdtV emknd LEPS_BACSU : 84- 93: vhyvk RiiGl-PgdtV emknd LEP_BACAM : 94- 103: vhyvk RliGk-PgetV emknd LEP_BACLI : 87- 96: vhyvk RliGl-PgdtV qmkdd LEP_ECOLI : 146- 155: ldyik RavGl-PgdkV tydpv LEP_HAEIN : 307- 317: hsdds RfwGfvPeknI vgkat LEP_PSEFL : 146- 155: vnyik RvvGl-PgdvV rytsd LEP_SALTY : 147- 156: ldyik RavGl-PgdkI tydpv YCSB_BACSU : 89- 98: rsfvk RliGl-PgdsI kmknd K 11: 15.1891 13( 13) G-[DT]-x(4)-S-x(2,3)-R Occurences: 13(13) IMP1_YEAST : 130- 140: hvwvt GDnlshSldsR tynal IMP2_YEAST : 158- 167: ppsrw GTdlklStg-R dcisk LEPA_BACAM : 146- 156: kyfvm GDnrrnSmdsR nglgl LEPC_BACCL : 144- 154: cifvl GDnrlsSwdsR hfgfv LEPP_BACSU : 147- 157: kyfvm GDnrqeSmdsR nglgl LEPS_BACSU : 145- 155: kyfvm GDnrrnSmdsR nglgl LEP_BACAM : 154- 164: kyfvm GDnrlnSmdsR nglgl LEP_BACLI : 147- 157: kyfvm GDnrqrSmdsR nglgl LEP_ECOLI : 272- 282: qyfmm GDnrdnSadsR ywgfv LEP_HAEIN : 297- 307: qyfvm GDhrdhSddsR fwgfv LEP_PSEFL : 225- 235: hyfmm GDnrdnSndsR ywddp LEP_SALTY : 273- 283: qyfmm GDnrdnSadsR ywgfv YCSB_BACSU : 148- 158: kyfvm GDnrlnSldsR ngmgm L 12: 15.1802 13( 13) N-x(3)-S-x(1,2)-D-x(0,2)-S Occurences: 13(13) IMP1_YEAST : 132- 139: wvtgd NlshSl-D--S rtyna IMP2_YEAST : 125- 132: wvegd NyfhSi-D--S ntfgp LEPA_BACAM : 148- 155: fvmgd NrrnSm-D--S rnglg LEPC_BACCL : 146- 153: fvlgd NrlsSw-D--S rhfgf LEPP_BACSU : 149- 156: fvmgd NrqeSm-D--S rnglg LEPS_BACSU : 147- 154: fvmgd NrrnSm-D--S rnglg LEP_BACAM : 156- 163: fvmgd NrlnSm-D--S rnglg LEP_BACLI : 149- 156: fvmgd NrqrSm-D--S rnglg LEP_ECOLI : 274- 281: fmmgd NrdnSa-D--S rywgf LEP_HAEIN : 180- 190: aafae NlalSskDnmS gvdyi LEP_PSEFL : 227- 234: fmmgd NrdnSn-D--S rywdd LEP_SALTY : 275- 282: fmmgd NrdnSa-D--S rywgf YCSB_BACSU : 150- 157: fvmgd NrlnSl-D--S rngmg M 13: 15.1802 13( 13) D-N-x(1,3)-S-x(1,2)-D Occurences: 13(13) IMP1_YEAST : 131- 138: vwvtg DNlshSl-D srtyn IMP2_YEAST : 124- 131: iwveg DNyfhSi-D sntfg LEPA_BACAM : 147- 154: yfvmg DNrrnSm-D srngl LEPC_BACCL : 145- 152: ifvlg DNrlsSw-D srhfg LEPC_BACCL : 145- 152: ifvlg DNrl-SswD srhfg LEPP_BACSU : 148- 155: yfvmg DNrqeSm-D srngl LEPS_BACSU : 146- 153: yfvmg DNrrnSm-D srngl LEP_BACAM : 155- 162: yfvmg DNrlnSm-D srngl LEP_BACLI : 148- 155: yfvmg DNrqrSm-D srngl LEP_ECOLI : 273- 280: yfmmg DNrdnSa-D srywg LEP_HAEIN : 187- 193: alssk DNm--SgvD yikri LEP_PSEFL : 226- 233: yfmmg DNrdnSn-D srywd LEP_SALTY : 274- 281: yfmmg DNrdnSa-D srywg YCSB_BACSU : 149- 156: yfvmg DNrlnSl-D srngm N 14: 14.6802 15( 13) K-x(3)-[EGN]-x-P-x(0,1)-G Occurences: 15(13) IMP1_YEAST : 84- 91: nhric KrvtGmP-G dlvlv IMP2_YEAST : 109- 117: kfpyp KpqvNlPrG hiwve LEPA_BACAM : 85- 92: nehyv KriiGlP-G dtvqm LEPC_BACCL : 79- 86: kedyv KrviGlP-G driay LEPP_BACSU : 86- 93: sthyv KrliGlP-G dtvem LEPS_BACSU : 83- 90: dvhyv KriiGlP-G dtvem LEP_BACAM : 93- 100: kvhyv KrliGkP-G etvem LEP_BACLI : 86- 93: nvhyv KrliGlP-G dtvqm LEP_ECOLI : 145- 152: kldyi KravGlP-G dkvty LEP_ECOLI : 305- 313: wmsfd KqegEwPtG lrlsr LEP_HAEIN : 330- 338: wmsle KeanEwPtG frfer LEP_PSEFL : 145- 152: nvnyi KrvvGlP-G dvvry LEP_SALTY : 146- 153: kldyi KravGlP-G dkity LEP_SALTY : 306- 314: wmsfd KqegEwPtG vrlsr YCSB_BACSU : 88- 95: grsfv KrliGlP-G dsikm O 15: 14.6351 14( 13) N-x(3,4)-S-x-D-[DNS] Occurences: 14(13) IMP1_YEAST : 132- 139: wvtgd Nlsh-SlDS rtyna IMP2_YEAST : 67- 75: kfgvk NpsnlSrDD iilfk IMP2_YEAST : 125- 132: wvegd Nyfh-SiDS ntfgp LEPA_BACAM : 148- 155: fvmgd Nrrn-SmDS rnglg LEPC_BACCL : 146- 153: fvlgd Nrls-SwDS rhfgf LEPP_BACSU : 149- 156: fvmgd Nrqe-SmDS rnglg LEPS_BACSU : 147- 154: fvmgd Nrrn-SmDS rnglg LEP_BACAM : 156- 163: fvmgd Nrln-SmDS rnglg LEP_BACLI : 149- 156: fvmgd Nrqr-SmDS rnglg LEP_ECOLI : 274- 281: fmmgd Nrdn-SaDS rywgf LEP_HAEIN : 180- 188: aafae NlalsSkDN msgvd LEP_PSEFL : 227- 234: fmmgd Nrdn-SnDS rywdd LEP_SALTY : 275- 282: fmmgd Nrdn-SaDS rywgf YCSB_BACSU : 150- 157: fvmgd Nrln-SlDS rngmg P 16: 12.5102 13( 13) S-x(2)-S-R Occurences: 13(13) IMP1_YEAST : 136- 140: dnlsh SldSR tynal IMP2_YEAST : 69- 73: gvknp SnlSR ddiil LEPA_BACAM : 152- 156: dnrrn SmdSR nglgl LEPC_BACCL : 150- 154: dnrls SwdSR hfgfv LEPP_BACSU : 153- 157: dnrqe SmdSR nglgl LEPS_BACSU : 151- 155: dnrrn SmdSR nglgl LEP_BACAM : 160- 164: dnrln SmdSR nglgl LEP_BACLI : 153- 157: dnrqr SmdSR nglgl LEP_ECOLI : 278- 282: dnrdn SadSR ywgfv LEP_HAEIN : 303- 307: dhrdh SddSR fwgfv LEP_PSEFL : 231- 235: dnrdn SndSR ywddp LEP_SALTY : 279- 283: dnrdn SadSR ywgfv YCSB_BACSU : 154- 158: dnrln SldSR ngmgm Q 17: 12.0102 14( 13) S-x(3)-T-x(0,1)-L Occurences: 14(13) IMP1_YEAST : 40- 45: etrge SmlpT-L satnd IMP2_YEAST : 41- 46: qvkgt SmqpT-L npqte IMP2_YEAST : 155- 161: ivwpp SrwgTdL klstg LEPA_BACAM : 45- 50: vvdge SmepT-L hdrer LEPC_BACCL : 38- 43: vvegk SmmpT-L esgnl LEPP_BACSU : 44- 49: vvegk SmdpT-L vdser LEPS_BACSU : 43- 48: vvdgd SmypT-L hnrer LEP_BACAM : 51- 56: lvegs SmypT-L hdger LEP_BACLI : 44- 49: lvegt SmdpT-L hdger LEP_ECOLI : 90- 95: qipsg SmmpT-L ligdf LEP_ECOLI : 90- 96: qipsg SmmpTlL igdfi LEP_HAEIN : 115- 120: qipsg SmesT-L rvgdf LEP_PSEFL : 90- 95: qipsg SmkpT-L dvgdf LEP_SALTY : 91- 96: qipsg SmmpT-L ligdf LEP_SALTY : 91- 97: qipsg SmmpTlL igdfi YCSB_BACSU : 46- 51: liegs SmapT-L kdser R 18: 12.0102 19( 13) G-x(0,1)-S-x(4)-L Occurences: 19(13) IMP1_YEAST : 38- 45: ftetr GeSmlptL satnd IMP2_YEAST : 5- 11: mfra G-SskrfL rntli IMP2_YEAST : 39- 46: iaqvk GtSmqptL npqte LEPA_BACAM : 43- 50: pyvvd GeSmeptL hdrer LEPC_BACCL : 36- 43: nyvve GkSmmptL esgnl LEPP_BACSU : 42- 49: pyvve GkSmdptL vdser LEPS_BACSU : 41- 48: pyvvd GdSmyptL hnrer LEP_BACAM : 49- 56: pylve GsSmyptL hdger LEP_BACLI : 42- 49: pylve GtSmdptL hdger LEP_ECOLI : 63- 70: gwlet GaSvfpvL aivli LEP_ECOLI : 89- 95: fqips G-SmmptL ligdf LEP_HAEIN : 114- 120: fqips G-SmestL rvgdf LEP_PSEFL : 63- 70: llvey GkSffpvL fivlv LEP_PSEFL : 89- 95: fqips G-SmkptL dvgdf LEP_PSEFL : 167- 174: rlfin GeSvaekL lgaep LEP_SALTY : 64- 71: gwlet GaSvfpvL aivli LEP_SALTY : 90- 96: fqips G-SmmptL ligdf YCSB_BACSU : 44- 51: pflie GsSmaptL kdser YCSB_BACSU : 83- 90: hdkks GrSfvkrL iglpg S 19: 12.0102 13( 13) F-x(2)-G-x(2,3)-R Occurences: 13(13) IMP1_YEAST : 164- 170: nfdkp FwdGsi-R niwgf IMP2_YEAST : 2- 9: m FraGsskR flrnt LEPA_BACAM : 143- 149: pddky FvmGdn-R rnsmd LEPA_BACAM : 143- 150: pddky FvmGdnrR nsmds LEPC_BACCL : 141- 147: ppgci FvlGdn-R lsswd LEPP_BACSU : 144- 150: pkdky FvmGdn-R qesmd LEPS_BACSU : 142- 148: pdnky FvmGdn-R rnsmd LEPS_BACSU : 142- 149: pdnky FvmGdnrR nsmds LEP_BACAM : 151- 157: pkgky FvmGdn-R lnsmd LEP_BACLI : 144- 150: pegky FvmGdn-R qrsmd LEP_ECOLI : 269- 275: ppgqy FmmGdn-R dnsad LEP_HAEIN : 294- 300: pegqy FvmGdh-R dhsdd LEP_PSEFL : 222- 228: paghy FmmGdn-R dnsnd LEP_SALTY : 270- 276: ppgqy FmmGdn-R dnsad YCSB_BACSU : 145- 151: psgky FvmGdn-R lnsld T 20: 11.5102 13( 13) D-x(3,4)-S-x(2,3)-R Occurences: 13(13) IMP1_YEAST : 131- 140: vwvtg DnlshSldsR tynal IMP2_YEAST : 160- 167: srwgt Dlkl-Stg-R dcisk LEPA_BACAM : 147- 156: yfvmg DnrrnSmdsR nglgl LEPC_BACCL : 145- 154: ifvlg DnrlsSwdsR hfgfv LEPP_BACSU : 148- 157: yfvmg DnrqeSmdsR nglgl LEPS_BACSU : 146- 155: yfvmg DnrrnSmdsR nglgl LEP_BACAM : 155- 164: yfvmg DnrlnSmdsR nglgl LEP_BACLI : 148- 157: yfvmg DnrqrSmdsR nglgl LEP_ECOLI : 273- 282: yfmmg DnrdnSadsR ywgfv LEP_HAEIN : 298- 307: yfvmg DhrdhSddsR fwgfv LEP_PSEFL : 226- 235: yfmmg DnrdnSndsR ywddp LEP_SALTY : 274- 283: yfmmg DnrdnSadsR ywgfv YCSB_BACSU : 149- 158: yfvmg DnrlnSldsR ngmgm Number of patterns evaluated by Pratt:1117 Total running time: 1 seconds