------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file SHMT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SHMT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLYA_ACTAC 420 GLYA_BACSU 415 GLYA_BRAJA 432 GLYA_CAMJE 414 GLYA_ECOLI 417 GLYA_HAEIN 421 GLYA_HYPME 434 GLYA_SALTY 417 GLYC_HUMAN 483 GLYC_NEUCR 479 GLYC_RABIT 483 GLYC_SHEEP 483 GLYC_YEAST 469 GLYM_HUMAN 474 GLYM_PEA 518 GLYM_RABIT 475 GLYM_YEAST 490 Pratt run started at Thu Feb 6 21:12:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 61.5508 17( 17) G-x(3,4)-N-x(0,1)-K-Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 2: 57.8807 22( 17) N-x(0,1)-K-Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 3: 57.3807 17( 17) G-x(4)-N-K-Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 4: 53.2107 17( 17) N-K-Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 5: 50.0406 17( 17) Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 6: 49.0406 17( 17) K-Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 7: 44.8706 17( 17) Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 8: 41.7005 17( 17) G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 9: 41.2005 17( 17) G-x(0,1)-P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 10: 37.5305 17( 17) P-G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 11: 37.0305 17( 17) P-G-x(1,2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 12: 36.5305 17( 17) F-P-x(2)-Q-G-G-P-x(2)-H-x-I-x(1,3)-A 13: 36.5305 17( 17) T-T-H-K-x-L-x-G-x-R-x(0,1)-G-x(1,2)-I 14: 36.5305 28( 17) V-x(2)-T-T-x(0,1)-H-K-x-L-x-G-x-R-x(0,1)-G 15: 36.5305 29( 17) V-x(2,3)-T-T-H-K-x-L-x-G-x-R-x(0,1)-G 16: 36.5305 28( 17) V-x(1,2)-T-T-x(0,1)-H-K-x-L-x-G-x-R-x(3)-I 17: 36.5305 17( 17) G-x-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 18: 36.5305 17( 17) E-x(2)-P-G-x(2)-Y-Y-G-G-x(4)-D-x(0,2)-E 19: 33.3604 17( 17) G-x(2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R 20: 32.8604 17( 17) G-x(1,2)-Y-Y-G-G-x(4)-D-x(2)-E-x(5)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 96.4606 17( 17) G-[ST]-x-[FLM]-[NQST]-N-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] B 2: 88.1929 17( 17) G-x(3,4)-N-x(0,1)-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] C 3: 84.5228 22( 17) N-x(0,1)-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] D 4: 84.0228 17( 17) N-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] E 5: 79.8528 17( 17) K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] F 6: 75.6827 17( 17) Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] G 7: 73.5036 17( 17) Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] H 8: 68.3336 17( 17) E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] I 9: 65.1635 17( 17) G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] J 10: 64.6635 17( 17) G-x(0,1)-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] K 11: 64.1635 17( 17) G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] L 12: 60.9935 17( 17) P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] M 13: 60.4935 17( 17) P-G-x(1,2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] N 14: 56.8234 17( 17) G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] O 15: 56.3234 17( 17) G-x(1,2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] P 16: 54.1704 28( 17) V-[STV]-[ST]-T-T-x(0,1)-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x-[IM]-[FIL] Q 17: 53.9293 28( 17) V-x(1,2)-T-T-x(0,1)-H-K-[ST]-L-x-G-[ACP]-R-[AGS]-[AG]-[ILM]-I-[FLM] R 18: 48.4063 29( 17) V-x(2,3)-T-T-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x-[IM]-[FIL] S 19: 45.0992 17( 17) T-T-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x(1,2)-I-[FIL] T 20: 44.5607 17( 17) F-P-[AGS]-x-Q-G-G-P-x(2)-H-x-I-x(1,3)-A-[LV]-[ACGS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 96.4606 17( 17) G-[ST]-x-[FLM]-[NQST]-N-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 48- 86: vmqaq GSqFTNKYAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 44- 82: vmeaq GSvLTNKYAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 58- 96: vleaq GSvMTNKYAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 43- 81: vmevm GSiLTNKYAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 48- 86: vmqaq GSqLTNKYAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 48- 86: vmeaq GSqFTNKYAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 60- 98: vldaa GSvLTNKYAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 48- 86: vmqaq GSqLTNKYAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 66- 104: vleal GScLNNKYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 58- 96: vfdal GSpMSNKYSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 65- 103: vleal GScLNNKYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 65- 103: vleal GScLNNKYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 57- 95: vfdal GTpLSNKYSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 59- 97: aleal GScLNNKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 96- 134: vmqav GSvMTNKYSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 60- 98: aleal GScLNNKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 73- 111: vmdls GSeLQNKYSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa B 2: 88.1929 17( 17) G-x(3,4)-N-x(0,1)-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 48- 86: vmqaq GsqftN-KYAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 44- 82: vmeaq GsvltN-KYAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 58- 96: vleaq GsvmtN-KYAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 43- 81: vmevm GsiltN-KYAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 48- 86: vmqaq GsqltN-KYAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 48- 86: vmeaq GsqftN-KYAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 60- 98: vldaa GsvltN-KYAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 48- 86: vmqaq GsqltN-KYAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 66- 104: vleal GsclnN-KYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_HUMAN : 66- 104: vleal Gscl-NnKYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 58- 96: vfdal GspmsN-KYSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 65- 103: vleal GsclnN-KYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_RABIT : 65- 103: vleal Gscl-NnKYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 65- 103: vleal GsclnN-KYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_SHEEP : 65- 103: vleal Gscl-NnKYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 57- 95: vfdal GtplsN-KYSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 59- 97: aleal GsclnN-KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_HUMAN : 59- 97: aleal Gscl-NnKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 96- 134: vmqav GsvmtN-KYSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 60- 98: aleal GsclnN-KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_RABIT : 60- 98: aleal Gscl-NnKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 73- 111: vmdls GselqN-KYSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa C 3: 84.5228 22( 17) N-x(0,1)-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 22(17) GLYA_ACTAC : 53- 86: gsqft N-KYAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 49- 82: gsvlt N-KYAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 63- 96: gsvmt N-KYAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 48- 81: gsilt N-KYAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 53- 86: gsqlt N-KYAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 53- 86: gsqft N-KYAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 65- 98: gsvlt N-KYAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 53- 86: gsqlt N-KYAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 70- 104: lgscl NnKYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_HUMAN : 71- 104: gscln N-KYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 63- 96: gspms N-KYSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 69- 103: lgscl NnKYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_RABIT : 70- 103: gscln N-KYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 69- 103: lgscl NnKYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_SHEEP : 70- 103: gscln N-KYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 62- 95: gtpls N-KYSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 63- 97: lgscl NnKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_HUMAN : 64- 97: gscln N-KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 101- 134: gsvmt N-KYSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 64- 98: lgscl NnKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_RABIT : 65- 98: gscln N-KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 78- 111: gselq N-KYSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa D 4: 84.0228 17( 17) N-K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 53- 86: gsqft NKYAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 49- 82: gsvlt NKYAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 63- 96: gsvmt NKYAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 48- 81: gsilt NKYAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 53- 86: gsqlt NKYAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 53- 86: gsqft NKYAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 65- 98: gsvlt NKYAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 53- 86: gsqlt NKYAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 71- 104: gscln NKYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 63- 96: gspms NKYSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 70- 103: gscln NKYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 70- 103: gscln NKYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 62- 95: gtpls NKYSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 64- 97: gscln NKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 101- 134: gsvmt NKYSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 65- 98: gscln NKYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 78- 111: gselq NKYSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa E 5: 79.8528 17( 17) K-Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 54- 86: sqftn KYAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 50- 82: svltn KYAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 64- 96: svmtn KYAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 49- 81: siltn KYAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 54- 86: sqltn KYAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 54- 86: sqftn KYAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 66- 98: svltn KYAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 54- 86: sqltn KYAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 72- 104: sclnn KYSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 64- 96: spmsn KYSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 71- 103: sclnn KYSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 71- 103: sclnn KYSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 63- 95: tplsn KYSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 65- 97: sclnn KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 102- 134: svmtn KYSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 66- 98: sclnn KYSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 79- 111: selqn KYSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa F 6: 75.6827 17( 17) Y-[AS]-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 55- 86: qftnk YAEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 51- 82: vltnk YAEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 65- 96: vmtnk YAEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 50- 81: iltnk YAEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 55- 86: qltnk YAEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 55- 86: qftnk YAEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 67- 98: vltnk YAEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 55- 86: qltnk YAEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 73- 104: clnnk YSEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 65- 96: pmsnk YSEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 72- 103: clnnk YSEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 72- 103: clnnk YSEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 64- 95: plsnk YSEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 66- 97: clnnk YSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 103- 134: vmtnk YSEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 67- 98: clnnk YSEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 80- 111: elqnk YSEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa G 7: 73.5036 17( 17) Y-x-E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 55- 86: qftnk YaEGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 51- 82: vltnk YaEGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 65- 96: vmtnk YaEGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 50- 81: iltnk YaEGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 55- 86: qltnk YaEGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 55- 86: qftnk YaEGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 67- 98: vltnk YaEGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 55- 86: qltnk YaEGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 73- 104: clnnk YsEGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 65- 96: pmsnk YsEGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 72- 103: clnnk YsEGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 72- 103: clnnk YsEGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 64- 95: plsnk YsEGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 66- 97: clnnk YsEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 103- 134: vmtnk YsEGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 67- 98: clnnk YsEGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 80- 111: elqnk YsEGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa H 8: 68.3336 17( 17) E-G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 57- 86: tnkya EGyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 53- 82: tnkya EGyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 67- 96: tnkya EGyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 52- 81: tnkya EGyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 57- 86: tnkya EGyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 57- 86: tnkya EGyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 69- 98: tnkya EGyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 57- 86: tnkya EGyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 75- 104: nnkys EGyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 67- 96: snkys EGlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 74- 103: nnkys EGyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 74- 103: nnkys EGyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 66- 95: snkys EGyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 68- 97: nnkys EGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 105- 134: tnkys EGyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 69- 98: nnkys EGyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 82- 111: qnkys EGyPGerYYGGNEiIDksEsLCqaRAleLY gldpa I 9: 65.1635 17( 17) G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 54- 82: nkyae GyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 68- 96: nkyae GyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 53- 81: nkyae GyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 58- 86: nkyae GyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 70- 98: nkyae GyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 58- 86: nkyae GyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 76- 104: nkyse GyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 68- 96: nkyse GlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 75- 103: nkyse GyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 75- 103: nkyse GyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 67- 95: nkyse GyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 69- 97: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 106- 134: nkyse GyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 70- 98: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 83- 111: nkyse GyPGerYYGGNEiIDksEsLCqaRAleLY gldpa J 10: 64.6635 17( 17) G-x(0,1)-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 54- 82: nkyae GyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 68- 96: nkyae GyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 53- 81: nkyae GyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 58- 86: nkyae GyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 70- 98: nkyae GyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 58- 86: nkyae GyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 76- 104: nkyse GyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 68- 96: nkyse GlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 75- 103: nkyse GyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 75- 103: nkyse GyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 67- 95: nkyse GyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 69- 97: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 106- 134: nkyse GyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 70- 98: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 83- 111: nkyse GyPGerYYGGNEiIDksEsLCqaRAleLY gldpa K 11: 64.1635 17( 17) G-x-P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(0,2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 54- 82: nkyae GyPGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 68- 96: nkyae GyPGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 53- 81: nkyae GyPGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 58- 86: nkyae GyPGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 58- 86: nkyae GyPGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 70- 98: nkyae GyPGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 58- 86: nkyae GyPGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 76- 104: nkyse GyPGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 68- 96: nkyse GlPGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 75- 103: nkyse GyPGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 75- 103: nkyse GyPGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 67- 95: nkyse GyPGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 69- 97: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 106- 134: nkyse GyPGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 70- 98: nkyse GyPGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 83- 111: nkyse GyPGerYYGGNEiIDksEsLCqaRAleLY gldpa L 12: 60.9935 17( 17) P-G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 60- 86: yaegy PGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 56- 82: yaegy PGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 70- 96: yaegy PGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 55- 81: yaegy PGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 60- 86: yaegy PGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 60- 86: yaegy PGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 72- 98: yaegy PGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 60- 86: yaegy PGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 78- 104: ysegy PGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 70- 96: ysegl PGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 77- 103: ysegy PGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 77- 103: ysegy PGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 69- 95: ysegy PGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 71- 97: ysegy PGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 108- 134: ysegy PGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 72- 98: ysegy PGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 85- 111: ysegy PGerYYGGNEiIDksEsLCqaRAleLY gldpa M 13: 60.4935 17( 17) P-G-x(1,2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 60- 86: yaegy PGkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 56- 82: yaegy PGkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 70- 96: yaegy PGalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 55- 81: yaegy PGkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 60- 86: yaegy PGkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 60- 86: yaegy PGkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 72- 98: yaegy PGkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 60- 86: yaegy PGkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 78- 104: ysegy PGqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 70- 96: ysegl PGarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 77- 103: ysegy PGqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 77- 103: ysegy PGqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 69- 95: ysegy PGarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 71- 97: ysegy PGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 108- 134: ysegy PGarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 72- 98: ysegy PGkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 85- 111: ysegy PGerYYGGNEiIDksEsLCqaRAleLY gldpa N 14: 56.8234 17( 17) G-x(2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 61- 86: aegyp GkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 57- 82: aegyp GkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 71- 96: aegyp GalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 56- 81: aegyp GkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 61- 86: aegyp GkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 61- 86: aegyp GkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 73- 98: aegyp GkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 61- 86: aegyp GkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 79- 104: segyp GqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 71- 96: seglp GarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 78- 103: segyp GqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 78- 103: segyp GqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 70- 95: segyp GarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 72- 97: segyp GkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 109- 134: segyp GarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 73- 98: segyp GkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 86- 111: segyp GerYYGGNEiIDksEsLCqaRAleLY gldpa O 15: 56.3234 17( 17) G-x(1,2)-Y-Y-G-G-[ACNT]-[EQ]-x-[AIV]-D-x(2)-E-x-[IL]-[AC]-x(2)-R-[AC]-x(2)-[AILV]-[FY] Occurences: 17(17) GLYA_ACTAC : 61- 86: aegyp GkrYYGGCEyADivEqLAieRAkeLF gadyv GLYA_BACSU : 57- 82: aegyp GkrYYGGCEhVDvvEdIArdRAkeIF gaehv GLYA_BRAJA : 71- 96: aegyp GalYYGGCEwVDvaEnLAidRAkkLF gagfa GLYA_CAMJE : 56- 81: aegyp GkrYYGGCEfVDeiEtLAieRCkkLF nckfa GLYA_ECOLI : 61- 86: aegyp GkrYYGGCEyVDivEqLAidRAkeLF gadya GLYA_HAEIN : 61- 86: aegyp GkrYYGGCEyADivEqLAidRAkeLF gadyv GLYA_HYPME : 73- 98: aegyp GkrYYGGCQyVDivEdIAidRAkkLF ncefa GLYA_SALTY : 61- 86: aegyp GkrYYGGCEyVDvvEqLAidRAkeLF gadya GLYC_HUMAN : 79- 104: segyp GqrYYGGTEfIDelEtLCqkRAlqAY kldpq GLYC_NEUCR : 71- 96: seglp GarYYGGNQhIDeiEvLCqnRAleAF hldpk GLYC_RABIT : 78- 103: segyp GqrYYGGTEhIDelEtLCqkRAlqAY gldpq GLYC_SHEEP : 78- 103: segyp GqrYYGGTEfIDelEvLCqkRAlqVY gldpe GLYC_YEAST : 70- 95: segyp GarYYGGNEhIDrmEiLCqqRAlkAF hvtpd GLYM_HUMAN : 72- 97: segyp GkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_PEA : 109- 134: segyp GarYYGGNEyIDmaEtLCqkRAleAF rldpa GLYM_RABIT : 73- 98: segyp GkrYYGGAEvVDeiElLCqrRAleAF dldpa GLYM_YEAST : 86- 111: segyp GerYYGGNEiIDksEsLCqaRAleLY gldpa P 16: 54.1704 28( 17) V-[STV]-[ST]-T-T-x(0,1)-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x-[IM]-[FIL] Occurences: 28(17) GLYA_ACTAC : 222- 240: lpyah VVTTTtHKTLgGPRgGlIL sscgd GLYA_ACTAC : 223- 240: pyahv VTTTT-HKTLgGPRgGlIL sscgd GLYA_BACSU : 220- 236: pyadf VTTTT-HKTLrGPR-GgMI lcree GLYA_BACSU : 220- 237: pyadf VTTTT-HKTLrGPRgGmIL creef GLYA_BRAJA : 233- 251: vpyah VTTTTtHKSLrGPRgGlIL sndet GLYA_CAMJE : 218- 234: phahv VSSTT-HKTLrGPR-GgII mtnde GLYA_ECOLI : 222- 240: vphah VVTTTtHKTLaGPRgGlIL akggs GLYA_ECOLI : 223- 240: phahv VTTTT-HKTLaGPRgGlIL akggs GLYA_HAEIN : 222- 240: lphah VVTTTtHKTLgGPRgGlIL sscgd GLYA_HAEIN : 223- 240: phahv VTTTT-HKTLgGPRgGlIL sscgd GLYA_HYPME : 235- 252: fphah VVTTTtHKTLrGPR-GgMI ltnda GLYA_HYPME : 235- 253: fphah VVTTTtHKTLrGPRgGmIL tndad GLYA_HYPME : 236- 252: phahv VTTTT-HKTLrGPR-GgMI ltnda GLYA_HYPME : 236- 253: phahv VTTTT-HKTLrGPRgGmIL tndad GLYA_SALTY : 222- 240: vphah VVTTTtHKTLaGPRgGlIL akggd GLYA_SALTY : 223- 240: phahv VTTTT-HKTLaGPRgGlIL akggd GLYC_HUMAN : 250- 268: fehch VVTTTtHKTLrGCRaGmIF yrkgv GLYC_HUMAN : 251- 268: ehchv VTTTT-HKTLrGCRaGmIF yrkgv GLYC_NEUCR : 242- 259: flyad VVTTTtHKSLrGPR-GaMI ffrgv GLYC_NEUCR : 243- 259: lyadv VTTTT-HKSLrGPR-GaMI ffrgv GLYC_RABIT : 249- 267: fehch VVTTTtHKTLrGCRaGmIF yrrgv GLYC_RABIT : 250- 267: ehchv VTTTT-HKTLrGCRaGmIF yrrgv GLYC_SHEEP : 249- 267: fehch VVTTTtHKTLrGCRaGmIF yrkgv GLYC_SHEEP : 250- 267: ehchv VTTTT-HKTLrGCRaGmIF yrkgv GLYC_YEAST : 242- 258: eyadi VTTTT-HKSLrGPR-GaMI ffrrg GLYM_HUMAN : 244- 261: khadi VTTTT-HKTLrGARsGlIF yrkgv GLYM_PEA : 280- 297: fdyad VVTTTtHKSLrGPR-GaMI ffrkg GLYM_PEA : 281- 297: dyadv VTTTT-HKSLrGPR-GaMI ffrkg GLYM_RABIT : 244- 262: fkhad VVTTTtHKTLrGARsGlIF yrkgv GLYM_RABIT : 245- 262: khadv VTTTT-HKTLrGARsGlIF yrkgv GLYM_YEAST : 259- 275: ehsdi VTTTT-HKSLrGPR-GaMI ffrkg Q 17: 53.9293 28( 17) V-x(1,2)-T-T-x(0,1)-H-K-[ST]-L-x-G-[ACP]-R-[AGS]-[AG]-[ILM]-I-[FLM] Occurences: 28(17) GLYA_ACTAC : 222- 240: lpyah VvtTTtHKTLgGPRGGLIL sscgd GLYA_ACTAC : 223- 240: pyahv VttTT-HKTLgGPRGGLIL sscgd GLYA_ACTAC : 223- 240: pyahv Vt-TTtHKTLgGPRGGLIL sscgd GLYA_BACSU : 220- 237: pyadf VttTT-HKTLrGPRGGMIL creef GLYA_BACSU : 220- 237: pyadf Vt-TTtHKTLrGPRGGMIL creef GLYA_BRAJA : 233- 251: vpyah VttTTtHKSLrGPRGGLIL sndet GLYA_CAMJE : 218- 235: phahv VssTT-HKTLrGPRGGIIM tndee GLYA_ECOLI : 222- 240: vphah VvtTTtHKTLaGPRGGLIL akggs GLYA_ECOLI : 223- 240: phahv VttTT-HKTLaGPRGGLIL akggs GLYA_ECOLI : 223- 240: phahv Vt-TTtHKTLaGPRGGLIL akggs GLYA_HAEIN : 222- 240: lphah VvtTTtHKTLgGPRGGLIL sscgd GLYA_HAEIN : 223- 240: phahv VttTT-HKTLgGPRGGLIL sscgd GLYA_HAEIN : 223- 240: phahv Vt-TTtHKTLgGPRGGLIL sscgd GLYA_HYPME : 235- 253: fphah VvtTTtHKTLrGPRGGMIL tndad GLYA_HYPME : 236- 253: phahv VttTT-HKTLrGPRGGMIL tndad GLYA_HYPME : 236- 253: phahv Vt-TTtHKTLrGPRGGMIL tndad GLYA_SALTY : 222- 240: vphah VvtTTtHKTLaGPRGGLIL akggd GLYA_SALTY : 223- 240: phahv VttTT-HKTLaGPRGGLIL akggd GLYA_SALTY : 223- 240: phahv Vt-TTtHKTLaGPRGGLIL akggd GLYC_HUMAN : 250- 268: fehch VvtTTtHKTLrGCRAGMIF yrkgv GLYC_HUMAN : 251- 268: ehchv VttTT-HKTLrGCRAGMIF yrkgv GLYC_HUMAN : 251- 268: ehchv Vt-TTtHKTLrGCRAGMIF yrkgv GLYC_NEUCR : 242- 260: flyad VvtTTtHKSLrGPRGAMIF frgvr GLYC_NEUCR : 243- 260: lyadv VttTT-HKSLrGPRGAMIF frgvr GLYC_NEUCR : 243- 260: lyadv Vt-TTtHKSLrGPRGAMIF frgvr GLYC_RABIT : 249- 267: fehch VvtTTtHKTLrGCRAGMIF yrrgv GLYC_RABIT : 250- 267: ehchv VttTT-HKTLrGCRAGMIF yrrgv GLYC_RABIT : 250- 267: ehchv Vt-TTtHKTLrGCRAGMIF yrrgv GLYC_SHEEP : 249- 267: fehch VvtTTtHKTLrGCRAGMIF yrkgv GLYC_SHEEP : 250- 267: ehchv VttTT-HKTLrGCRAGMIF yrkgv GLYC_SHEEP : 250- 267: ehchv Vt-TTtHKTLrGCRAGMIF yrkgv GLYC_YEAST : 242- 259: eyadi VttTT-HKSLrGPRGAMIF frrgv GLYC_YEAST : 242- 259: eyadi Vt-TTtHKSLrGPRGAMIF frrgv GLYM_HUMAN : 244- 261: khadi VttTT-HKTLrGARSGLIF yrkgv GLYM_HUMAN : 244- 261: khadi Vt-TTtHKTLrGARSGLIF yrkgv GLYM_PEA : 280- 298: fdyad VvtTTtHKSLrGPRGAMIF frkgl GLYM_PEA : 281- 298: dyadv VttTT-HKSLrGPRGAMIF frkgl GLYM_PEA : 281- 298: dyadv Vt-TTtHKSLrGPRGAMIF frkgl GLYM_RABIT : 244- 262: fkhad VvtTTtHKTLrGARSGLIF yrkgv GLYM_RABIT : 245- 262: khadv VttTT-HKTLrGARSGLIF yrkgv GLYM_RABIT : 245- 262: khadv Vt-TTtHKTLrGARSGLIF yrkgv GLYM_YEAST : 259- 276: ehsdi VttTT-HKSLrGPRGAMIF frkgi GLYM_YEAST : 259- 276: ehsdi Vt-TTtHKSLrGPRGAMIF frkgi R 18: 48.4063 29( 17) V-x(2,3)-T-T-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x-[IM]-[FIL] Occurences: 29(17) GLYA_ACTAC : 222- 240: lpyah VvttTTHKTLgGPRgGlIL sscgd GLYA_ACTAC : 223- 240: pyahv Vtt-TTHKTLgGPRgGlIL sscgd GLYA_BACSU : 220- 236: pyadf Vtt-TTHKTLrGPR-GgMI lcree GLYA_BACSU : 220- 237: pyadf Vtt-TTHKTLrGPRgGmIL creef GLYA_BRAJA : 233- 251: vpyah VtttTTHKSLrGPRgGlIL sndet GLYA_CAMJE : 217- 234: fphah VvssTTHKTLrGPR-GgII mtnde GLYA_CAMJE : 218- 234: phahv Vss-TTHKTLrGPR-GgII mtnde GLYA_ECOLI : 222- 240: vphah VvttTTHKTLaGPRgGlIL akggs GLYA_ECOLI : 223- 240: phahv Vtt-TTHKTLaGPRgGlIL akggs GLYA_HAEIN : 222- 240: lphah VvttTTHKTLgGPRgGlIL sscgd GLYA_HAEIN : 223- 240: phahv Vtt-TTHKTLgGPRgGlIL sscgd GLYA_HYPME : 235- 252: fphah VvttTTHKTLrGPR-GgMI ltnda GLYA_HYPME : 235- 253: fphah VvttTTHKTLrGPRgGmIL tndad GLYA_HYPME : 236- 252: phahv Vtt-TTHKTLrGPR-GgMI ltnda GLYA_HYPME : 236- 253: phahv Vtt-TTHKTLrGPRgGmIL tndad GLYA_SALTY : 222- 240: vphah VvttTTHKTLaGPRgGlIL akggd GLYA_SALTY : 223- 240: phahv Vtt-TTHKTLaGPRgGlIL akggd GLYC_HUMAN : 250- 268: fehch VvttTTHKTLrGCRaGmIF yrkgv GLYC_HUMAN : 251- 268: ehchv Vtt-TTHKTLrGCRaGmIF yrkgv GLYC_NEUCR : 242- 259: flyad VvttTTHKSLrGPR-GaMI ffrgv GLYC_NEUCR : 243- 259: lyadv Vtt-TTHKSLrGPR-GaMI ffrgv GLYC_RABIT : 249- 267: fehch VvttTTHKTLrGCRaGmIF yrrgv GLYC_RABIT : 250- 267: ehchv Vtt-TTHKTLrGCRaGmIF yrrgv GLYC_SHEEP : 249- 267: fehch VvttTTHKTLrGCRaGmIF yrkgv GLYC_SHEEP : 250- 267: ehchv Vtt-TTHKTLrGCRaGmIF yrkgv GLYC_YEAST : 242- 258: eyadi Vtt-TTHKSLrGPR-GaMI ffrrg GLYM_HUMAN : 244- 261: khadi Vtt-TTHKTLrGARsGlIF yrkgv GLYM_PEA : 280- 297: fdyad VvttTTHKSLrGPR-GaMI ffrkg GLYM_PEA : 281- 297: dyadv Vtt-TTHKSLrGPR-GaMI ffrkg GLYM_RABIT : 244- 262: fkhad VvttTTHKTLrGARsGlIF yrkgv GLYM_RABIT : 245- 262: khadv Vtt-TTHKTLrGARsGlIF yrkgv GLYM_YEAST : 259- 275: ehsdi Vtt-TTHKSLrGPR-GaMI ffrkg S 19: 45.0992 17( 17) T-T-H-K-[ST]-L-x-G-[ACP]-R-x(0,1)-G-x(1,2)-I-[FIL] Occurences: 17(17) GLYA_ACTAC : 226- 240: hvvtt TTHKTLgGPRgGl-IL sscgd GLYA_ACTAC : 226- 240: hvvtt TTHKTLgGPR-GglIL sscgd GLYA_BACSU : 223- 237: dfvtt TTHKTLrGPRgGm-IL creef GLYA_BACSU : 223- 237: dfvtt TTHKTLrGPR-GgmIL creef GLYA_BRAJA : 237- 251: hvttt TTHKSLrGPRgGl-IL sndet GLYA_BRAJA : 237- 251: hvttt TTHKSLrGPR-GglIL sndet GLYA_CAMJE : 221- 234: hvvss TTHKTLrGPR-Gg-II mtnde GLYA_ECOLI : 226- 240: hvvtt TTHKTLaGPRgGl-IL akggs GLYA_ECOLI : 226- 240: hvvtt TTHKTLaGPR-GglIL akggs GLYA_HAEIN : 226- 240: hvvtt TTHKTLgGPRgGl-IL sscgd GLYA_HAEIN : 226- 240: hvvtt TTHKTLgGPR-GglIL sscgd GLYA_HYPME : 239- 253: hvvtt TTHKTLrGPRgGm-IL tndad GLYA_HYPME : 239- 253: hvvtt TTHKTLrGPR-GgmIL tndad GLYA_SALTY : 226- 240: hvvtt TTHKTLaGPRgGl-IL akggd GLYA_SALTY : 226- 240: hvvtt TTHKTLaGPR-GglIL akggd GLYC_HUMAN : 254- 268: hvvtt TTHKTLrGCRaGm-IF yrkgv GLYC_NEUCR : 246- 260: dvvtt TTHKSLrGPR-GamIF frgvr GLYC_RABIT : 253- 267: hvvtt TTHKTLrGCRaGm-IF yrrgv GLYC_SHEEP : 253- 267: hvvtt TTHKTLrGCRaGm-IF yrkgv GLYC_YEAST : 245- 259: divtt TTHKSLrGPR-GamIF frrgv GLYM_HUMAN : 247- 261: divtt TTHKTLrGARsGl-IF yrkgv GLYM_PEA : 284- 298: dvvtt TTHKSLrGPR-GamIF frkgl GLYM_RABIT : 248- 262: dvvtt TTHKTLrGARsGl-IF yrkgv GLYM_YEAST : 262- 276: divtt TTHKSLrGPR-GamIF frkgi T 20: 44.5607 17( 17) F-P-[AGS]-x-Q-G-G-P-x(2)-H-x-I-x(1,3)-A-[LV]-[ACGS] Occurences: 17(17) GLYA_ACTAC : 257- 275: lnsav FPAgQGGPlvHiIaakAVC fkeal GLYA_BACSU : 251- 269: idksi FPGiQGGPlmHvIaakAVS fgevl GLYA_BRAJA : 266- 284: lnsai FPGlQGGPlmHvIaakAVA fgeal GLYA_CAMJE : 250- 268: insai FPGiQGGPlmHvIaakAVG fkfnl GLYA_ECOLI : 257- 275: lnsav FPGgQGGPlmHvIagkAVA lkeam GLYA_HAEIN : 257- 275: lqssv FPAnQGGPlvHiIaakAVC fkgal GLYA_HYPME : 268- 286: insai FPGiQGGPlmHvIagkAVA fgeal GLYA_SALTY : 257- 275: lnsav FPSaQGGPlmHvIagkAVG lkeam GLYC_HUMAN : 297- 315: insav FPGlQGGPhnHaIagvAVA lkqam GLYC_NEUCR : 288- 304: infsv FPGhQGGPhnHtIt--ALA valkq GLYC_NEUCR : 288- 306: infsv FPGhQGGPhnHtItalAVA lkqaa GLYC_RABIT : 296- 314: insav FPGlQGGPhnHaIagvAVA lkqam GLYC_SHEEP : 296- 314: insav FPGlQGGPhnHaIagvAVA lkqam GLYC_YEAST : 288- 304: infsv FPGhQGGPhnHtIa--ALA talkq GLYM_HUMAN : 290- 306: infav FPSlQGGPhnHaIa--AVA valkq GLYM_HUMAN : 290- 308: infav FPSlQGGPhnHaIaavAVA lkqac GLYM_PEA : 326- 344: inqav FPGlQGGPhnHtItglAVA lkqat GLYM_RABIT : 291- 307: infav FPSlQGGPhnHaIa--AVA valkq GLYM_RABIT : 291- 309: infav FPSlQGGPhnHaIaavAVA lkqac GLYM_YEAST : 304- 322: infsv FPGhQGGPhnHtIgamAVA lkqam Number of patterns evaluated by Pratt:15521 Total running time: 18 seconds