------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file SHIKIMATE_KINASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SHIKIMATE_KINASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ARO1_EMENI 1603 ARO1_YEAST 1588 AROK_BACSU 186 AROK_ECOLI 172 AROK_HAEIN 180 AROK_LACLA 162 AROK_PSEAE 60 AROL_ECOLI 174 AROL_ERWCH 173 AROL_LYCES 300 Pratt run started at Thu Feb 6 21:12:44 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 10( 10) G-x(4)-G-K-x-T 2: 15.6802 10( 10) L-x(3)-F-x-D-x(1,3)-D 3: 15.6802 12( 10) A-x(0,2)-L-x(5)-D-x-D 4: 15.6802 11( 10) G-x(0,1)-G-K-x(0,1)-T 5: 15.6802 10( 10) G-x(2,3)-G-x-G-x(1,2)-T 6: 14.6802 11( 10) L-x(1,3)-F-x-D-x(1,3)-D 7: 14.6802 11( 10) A-x(0,2)-L-x(3,5)-F-x-D 8: 14.6802 11( 10) G-x(2)-G-x(1,3)-G-x(2,4)-T 9: 12.5102 10( 10) G-K-x-T 10: 12.0102 11( 10) F-x(1,2)-D-x-D 11: 12.0102 11( 10) A-x(2,3)-L-x(5)-D 12: 12.0102 11( 10) A-x(1,2)-L-x(5)-D 13: 12.0102 13( 10) L-x(3,4)-L-x(5)-D 14: 12.0102 12( 10) T-x(4)-L-x(0,1)-A 15: 12.0102 13( 10) L-x(4)-G-x(4,5)-T 16: 11.5102 15( 10) E-x(3)-R-x(1,3)-E 17: 11.5102 12( 10) F-x-D-x(1,3)-D 18: 11.5102 11( 10) A-x(2)-L-x(2,4)-F 19: 11.5102 21( 10) L-x(0,1)-A-x(1,2)-L 20: 11.5102 14( 10) G-x(3,4)-A-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 37.4139 10( 10) G-x(2)-[AG]-[ACV]-G-K-[ST]-T-[AIV]-[AGS]-x(3)-[AS]-x(2)-[FL] B 2: 27.3915 10( 10) G-K-[ST]-T-[AIV]-[AGS]-x(3)-[AS]-x(2)-[FL] C 3: 27.2082 12( 10) A-x(0,2)-L-x(3)-[FL]-x-D-x-D-x(2)-[FILM]-[EQ]-x(3)-[EGN] D 4: 26.8113 10( 10) G-x(0,1)-G-K-x(0,1)-T-[AIV]-[AGI]-x(2)-[LPV]-[AL] E 5: 25.5982 11( 10) A-x(0,2)-L-x(3,5)-F-x-D-x-[DE]-x(2)-[ILM]-[EPQ]-x(3)-[EGNQ] F 6: 22.8734 10( 10) A-x(2)-L-x(2,4)-F-x-[CDSV]-x-[CDT]-x(2)-[ILMV]-[DEPQ]-x(3)-[AEGNQ] G 7: 21.5461 10( 10) G-x(2,3)-G-[ACV]-G-x(1,2)-T-x(4)-[LV] H 8: 18.4516 11( 10) A-x(2,3)-L-x(3)-[FL]-x-D-x-[DR] I 9: 18.4516 10( 10) A-x(1,2)-L-x(3)-[FL]-x-D-x-[DR] J 10: 17.8639 11( 10) G-x(2)-G-x(1,3)-G-x(2,4)-T-x(4)-[LV] K 11: 17.0882 10( 10) F-x(1,2)-D-x-D-x(2)-[FILM]-x(4)-[EGN] L 12: 15.6802 10( 10) L-x(3)-F-x-D-x(1,3)-D M 13: 14.6802 11( 10) L-x(1,3)-F-x-D-x(1,3)-D N 14: 14.6600 11( 10) L-x(3,4)-L-x(3)-[FLV]-x-D O 15: 13.9189 13( 10) L-x(4)-G-x(4,5)-T-x-[AGILV] P 16: 12.0102 13( 10) L-x(3,4)-L-x(5)-D Q 17: 12.0102 12( 10) T-x(4)-L-x(0,1)-A R 18: 12.0102 13( 10) L-x(4)-G-x(4,5)-T S 19: 11.5102 15( 10) E-x(3)-R-x(1,3)-E T 20: 11.5102 12( 10) F-x-D-x(1,3)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 37.4139 10( 10) G-x(2)-[AG]-[ACV]-G-K-[ST]-T-[AIV]-[AGS]-x(3)-[AS]-x(2)-[FL] Occurences: 10(10) ARO1_EMENI : 871- 888: siyii GmrGAGKSTAGnwvSkaL nrpfv ARO1_YEAST : 895- 912: svvii GmrAAGKTTISkwcAsaL gyklv AROK_BACSU : 18- 35: nivli GfmGVGKTTIGqlvAkkL yrdfi AROK_ECOLI : 10- 27: niflv GpmGAGKSTIGrqlAqqL nmefy AROK_HAEIN : 11- 28: niflv GpmGAGKSTIGrqlAqqL nmdfi AROK_LACLA : 7- 24: siili GfmGAGKSTVAkllAeeF tdldk AROK_PSEAE : 8- 25: nlilv GpmGAGKSTIGrllAkeL hlafk AROL_ECOLI : 9- 26: plfli GprGCGKTTVGmalAdsL nrrfv AROL_ERWCH : 9- 26: pifmv GarGCGKTTVGrelAraL gyefv AROL_LYCES : 111- 128: cvylv GmmGCGKTTVGrilAetL gysff B 2: 27.3915 10( 10) G-K-[ST]-T-[AIV]-[AGS]-x(3)-[AS]-x(2)-[FL] Occurences: 10(10) ARO1_EMENI : 876- 888: gmrga GKSTAGnwvSkaL nrpfv ARO1_YEAST : 900- 912: gmraa GKTTISkwcAsaL gyklv AROK_BACSU : 23- 35: gfmgv GKTTIGqlvAkkL yrdfi AROK_ECOLI : 15- 27: gpmga GKSTIGrqlAqqL nmefy AROK_HAEIN : 16- 28: gpmga GKSTIGrqlAqqL nmdfi AROK_LACLA : 12- 24: gfmga GKSTVAkllAeeF tdldk AROK_PSEAE : 13- 25: gpmga GKSTIGrllAkeL hlafk AROL_ECOLI : 14- 26: gprgc GKTTVGmalAdsL nrrfv AROL_ERWCH : 14- 26: gargc GKTTVGrelAraL gyefv AROL_LYCES : 116- 128: gmmgc GKTTVGrilAetL gysff C 3: 27.2082 12( 10) A-x(0,2)-L-x(3)-[FL]-x-D-x-D-x(2)-[FILM]-[EQ]-x(3)-[EGN] Occurences: 12(10) ARO1_EMENI : 887- 904: nwvsk A--LnrpFvDlDteLEtveG mtipd ARO1_YEAST : 909- 928: iskwc AsaLgykLvDlDelFEqqhN nqsvk ARO1_YEAST : 911- 928: kwcas A--LgykLvDlDelFEqqhN nqsvk AROK_BACSU : 32- 51: igqlv AkkLyrdFiDiDqqIEkdfN msipe AROK_ECOLI : 24- 43: igrql AqqLnmeFyDsDqeIEkrtG advgw AROK_HAEIN : 25- 44: igrql AqqLnmdFiDsDavIEertG adisw AROK_LACLA : 17- 36: gkstv AklLaeeFtDlDklIEeeiE mpiat AROK_PSEAE : 22- 41: igrll AkeLhlaFkDsDkeIEqrcG anipw AROL_ECOLI : 23- 42: vgmal AdsLnrrFvDtDqwLQsqlN mtvae AROL_ERWCH : 23- 42: vgrel AraLgyeFvDtDifMQhtsG mtvad AROL_ERWCH : 25- 42: relar A--LgyeFvDtDifMQhtsG mtvad AROL_LYCES : 125- 144: vgril AetLgysFfDcDrlIEqavG gitva D 4: 26.8113 10( 10) G-x(0,1)-G-K-x(0,1)-T-[AIV]-[AGI]-x(2)-[LPV]-[AL] Occurences: 10(10) ARO1_EMENI : 150- 159: vdssi G-GK-TAIdtPL gknli ARO1_YEAST : 145- 154: vdssi G-GK-TAIdtPL gknfi AROK_BACSU : 21- 32: ligfm GvGKtTIGqlVA kklyr AROK_ECOLI : 13- 24: lvgpm GaGKsTIGrqLA qqlnm AROK_HAEIN : 14- 25: lvgpm GaGKsTIGrqLA qqlnm AROK_LACLA : 10- 21: ligfm GaGKsTVAklLA eeftd AROK_PSEAE : 11- 22: lvgpm GaGKsTIGrlLA kelhl AROL_ECOLI : 12- 23: ligpr GcGKtTVGmaLA dslnr AROL_ERWCH : 12- 23: mvgar GcGKtTVGreLA ralgy AROL_LYCES : 114- 125: lvgmm GcGKtTVGriLA etlgy E 5: 25.5982 11( 10) A-x(0,2)-L-x(3,5)-F-x-D-x-[DE]-x(2)-[ILM]-[EPQ]-x(3)-[EGNQ] Occurences: 11(10) ARO1_EMENI : 887- 904: nwvsk A--Lnrp--FvDlDteLEtveG mtipd ARO1_YEAST : 1162- 1181: elydi A--LkngveFlDlEltLPtdiQ yevin AROK_BACSU : 32- 51: igqlv AkkLyrd--FiDiDqqIEkdfN msipe AROK_ECOLI : 24- 43: igrql AqqLnme--FyDsDqeIEkrtG advgw AROK_HAEIN : 25- 44: igrql AqqLnmd--FiDsDavIEertG adisw AROK_LACLA : 17- 36: gkstv AklLaee--FtDlDklIEeeiE mpiat AROK_LACLA : 17- 36: gkstv Ak-Llaee-FtDlDklIEeeiE mpiat AROK_PSEAE : 22- 41: igrll AkeLhla--FkDsDkeIEqrcG anipw AROL_ECOLI : 23- 42: vgmal AdsLnrr--FvDtDqwLQsqlN mtvae AROL_ERWCH : 23- 42: vgrel AraLgye--FvDtDifMQhtsG mtvad AROL_ERWCH : 25- 42: relar A--Lgye--FvDtDifMQhtsG mtvad AROL_LYCES : 125- 144: vgril AetLgys--FfDcDrlIEqavG gitva F 6: 22.8734 10( 10) A-x(2)-L-x(2,4)-F-x-[CDSV]-x-[CDT]-x(2)-[ILMV]-[DEPQ]-x(3)-[AEGNQ] Occurences: 10(10) ARO1_EMENI : 1137- 1157: nahda AleLyrlaFrSgCefVDldiA fpedm ARO1_YEAST : 774- 792: rilam AteLak--FgVkTteLPdgiQ vhgln AROK_BACSU : 32- 51: igqlv AkkLyrd-FiDiDqqIEkdfN msipe AROK_ECOLI : 24- 43: igrql AqqLnme-FyDsDqeIEkrtG advgw AROK_HAEIN : 25- 44: igrql AqqLnmd-FiDsDavIEertG adisw AROK_LACLA : 17- 36: gkstv AklLaee-FtDlDklIEeeiE mpiat AROK_PSEAE : 22- 41: igrll AkeLhla-FkDsDkeIEqrcG anipw AROL_ECOLI : 23- 42: vgmal AdsLnrr-FvDtDqwLQsqlN mtvae AROL_ERWCH : 23- 42: vgrel AraLgye-FvDtDifMQhtsG mtvad AROL_LYCES : 125- 144: vgril AetLgys-FfDcDrlIEqavG gitva G 7: 21.5461 10( 10) G-x(2,3)-G-[ACV]-G-x(1,2)-T-x(4)-[LV] Occurences: 10(10) ARO1_EMENI : 871- 884: siyii Gmr-GAGksTagnwV skaln ARO1_YEAST : 1429- 1442: vghta GlviGAGg-TsraaL yalhs AROK_BACSU : 18- 30: nivli Gfm-GVGk-TtigqL vakkl AROK_BACSU : 18- 31: nivli Gfm-GVGktTigqlV akkly AROK_ECOLI : 10- 23: niflv Gpm-GAGksTigrqL aqqln AROK_HAEIN : 11- 24: niflv Gpm-GAGksTigrqL aqqln AROK_LACLA : 7- 20: siili Gfm-GAGksTvaklL aeeft AROK_PSEAE : 8- 21: nlilv Gpm-GAGksTigrlL akelh AROL_ECOLI : 9- 22: plfli Gpr-GCGktTvgmaL adsln AROL_ERWCH : 9- 22: pifmv Gar-GCGktTvgreL aralg AROL_LYCES : 111- 124: cvylv Gmm-GCGktTvgriL aetlg H 8: 18.4516 11( 10) A-x(2,3)-L-x(3)-[FL]-x-D-x-[DR] Occurences: 11(10) ARO1_EMENI : 321- 333: ivkcl AaygLptsLkDaR irklt ARO1_EMENI : 322- 333: vkcla Ayg-LptsLkDaR irklt ARO1_YEAST : 909- 920: iskwc Asa-LgykLvDlD elfeq AROK_BACSU : 32- 43: igqlv Akk-LyrdFiDiD qqiek AROK_ECOLI : 24- 35: igrql Aqq-LnmeFyDsD qeiek AROK_HAEIN : 25- 36: igrql Aqq-LnmdFiDsD aviee AROK_LACLA : 17- 28: gkstv Akl-LaeeFtDlD kliee AROK_PSEAE : 22- 33: igrll Ake-LhlaFkDsD keieq AROL_ECOLI : 23- 34: vgmal Ads-LnrrFvDtD qwlqs AROL_ERWCH : 23- 34: vgrel Ara-LgyeFvDtD ifmqh AROL_LYCES : 125- 136: vgril Aet-LgysFfDcD rlieq I 9: 18.4516 10( 10) A-x(1,2)-L-x(3)-[FL]-x-D-x-[DR] Occurences: 10(10) ARO1_EMENI : 322- 333: vkcla AygLptsLkDaR irklt ARO1_YEAST : 909- 920: iskwc AsaLgykLvDlD elfeq AROK_BACSU : 32- 43: igqlv AkkLyrdFiDiD qqiek AROK_ECOLI : 24- 35: igrql AqqLnmeFyDsD qeiek AROK_HAEIN : 25- 36: igrql AqqLnmdFiDsD aviee AROK_LACLA : 17- 28: gkstv AklLaeeFtDlD kliee AROK_PSEAE : 22- 33: igrll AkeLhlaFkDsD keieq AROL_ECOLI : 23- 34: vgmal AdsLnrrFvDtD qwlqs AROL_ERWCH : 23- 34: vgrel AraLgyeFvDtD ifmqh AROL_LYCES : 125- 136: vgril AetLgysFfDcD rlieq J 10: 17.8639 11( 10) G-x(2)-G-x(1,3)-G-x(2,4)-T-x(4)-[LV] Occurences: 11(10) ARO1_EMENI : 115- 132: ialgg GviGdltGfvasTymrgV ryvqv ARO1_EMENI : 871- 884: siyii GmrGa--Gks--TagnwV skaln ARO1_YEAST : 110- 127: vaigg GviGdmiGfvasTfmrgV rvvqv AROK_BACSU : 18- 31: nivli GfmGv--Gkt--TigqlV akkly AROK_ECOLI : 10- 23: niflv GpmGa--Gks--TigrqL aqqln AROK_HAEIN : 11- 24: niflv GpmGa--Gks--TigrqL aqqln AROK_LACLA : 7- 20: siili GfmGa--Gks--TvaklL aeeft AROK_PSEAE : 8- 21: nlilv GpmGa--Gks--TigrlL akelh AROL_ECOLI : 9- 22: plfli GprGc--Gkt--TvgmaL adsln AROL_ERWCH : 9- 22: pifmv GarGc--Gkt--TvgreL aralg AROL_LYCES : 111- 124: cvylv GmmGc--Gkt--TvgriL aetlg K 11: 17.0882 10( 10) F-x(1,2)-D-x-D-x(2)-[FILM]-x(4)-[EGN] Occurences: 10(10) ARO1_EMENI : 892- 904: alnrp Fv-DlDteLetveG mtipd ARO1_YEAST : 389- 402: gdsaq FvsDeDlrFiltdE tlvyp AROK_BACSU : 39- 51: klyrd Fi-DiDqqIekdfN msipe AROK_ECOLI : 31- 43: qlnme Fy-DsDqeIekrtG advgw AROK_HAEIN : 32- 44: qlnmd Fi-DsDavIeertG adisw AROK_LACLA : 24- 36: llaee Ft-DlDklIeeeiE mpiat AROK_PSEAE : 29- 41: elhla Fk-DsDkeIeqrcG anipw AROL_ECOLI : 30- 42: slnrr Fv-DtDqwLqsqlN mtvae AROL_ERWCH : 30- 42: algye Fv-DtDifMqhtsG mtvad AROL_LYCES : 132- 144: tlgys Ff-DcDrlIeqavG gitva L 12: 15.6802 10( 10) L-x(3)-F-x-D-x(1,3)-D Occurences: 10(10) ARO1_EMENI : 888- 896: wvska LnrpFvDl--D telet ARO1_YEAST : 404- 414: ltdet LvypFkDipaD qqkvv AROK_BACSU : 35- 43: lvakk LyrdFiDi--D qqiek AROK_ECOLI : 27- 35: qlaqq LnmeFyDs--D qeiek AROK_HAEIN : 28- 36: qlaqq LnmdFiDs--D aviee AROK_LACLA : 20- 28: tvakl LaeeFtDl--D kliee AROK_PSEAE : 25- 33: llake LhlaFkDs--D keieq AROL_ECOLI : 26- 34: alads LnrrFvDt--D qwlqs AROL_ERWCH : 26- 34: elara LgyeFvDt--D ifmqh AROL_LYCES : 128- 136: ilaet LgysFfDc--D rlieq M 13: 14.6802 11( 10) L-x(1,3)-F-x-D-x(1,3)-D Occurences: 11(10) ARO1_EMENI : 888- 896: wvska LnrpFvDl--D telet ARO1_YEAST : 404- 414: ltdet LvypFkDipaD qqkvv AROK_BACSU : 35- 43: lvakk LyrdFiDi--D qqiek AROK_ECOLI : 27- 35: qlaqq LnmeFyDs--D qeiek AROK_HAEIN : 28- 36: qlaqq LnmdFiDs--D aviee AROK_LACLA : 20- 28: tvakl LaeeFtDl--D kliee AROK_PSEAE : 25- 33: llake LhlaFkDs--D keieq AROK_PSEAE : 27- 33: akelh La--FkDs--D keieq AROL_ECOLI : 26- 34: alads LnrrFvDt--D qwlqs AROL_ERWCH : 26- 34: elara LgyeFvDt--D ifmqh AROL_LYCES : 128- 136: ilaet LgysFfDc--D rlieq N 14: 14.6600 11( 10) L-x(3,4)-L-x(3)-[FLV]-x-D Occurences: 11(10) ARO1_EMENI : 320- 331: rivkc LaaygLptsLkD arirk ARO1_YEAST : 399- 410: dlrfi LtdetLvypFkD ipadq AROK_BACSU : 30- 41: ttigq LvakkLyrdFiD idqqi AROK_ECOLI : 23- 33: tigrq Laqq-LnmeFyD sdqei AROK_HAEIN : 24- 34: tigrq Laqq-LnmdFiD sdavi AROK_LACLA : 135- 145: mkdys Lvad-LtidVtD kspeq AROK_PSEAE : 20- 31: stigr LlakeLhlaFkD sdkei AROK_PSEAE : 21- 31: tigrl Lake-LhlaFkD sdkei AROL_ECOLI : 22- 32: tvgma Lads-LnrrFvD tdqwl AROL_ERWCH : 22- 32: tvgre Lara-LgyeFvD tdifm AROL_LYCES : 124- 134: tvgri Laet-LgysFfD cdrli O 15: 13.9189 13( 10) L-x(4)-G-x(4,5)-T-x-[AGILV] Occurences: 13(10) ARO1_EMENI : 367- 379: kkkiv LlsaiGtpye-TrA svvan ARO1_YEAST : 309- 321: vkeae LsryfGilsp-TqV arlsk AROK_BACSU : 16- 28: erniv LigfmGvgkt-TiG qlvak AROK_ECOLI : 8- 20: krnif LvgpmGagks-TiG rqlaq AROK_ECOLI : 69- 81: kvine LtekqGivla-TgG gsvks AROK_HAEIN : 9- 21: krnif LvgpmGagks-TiG rqlaq AROK_HAEIN : 70- 82: riine LtqmqGivls-TgG gavls AROK_LACLA : 5- 17: msii LigfmGagks-TvA kllae AROK_PSEAE : 6- 18: mvnli LvgpmGagks-TiG rllak AROL_ECOLI : 7- 19: tqplf LigprGcgkt-TvG malad AROL_ERWCH : 22- 35: tvgre LaralGyefvdTdI fmqht AROL_LYCES : 109- 121: grcvy LvgmmGcgkt-TvG rilae AROL_LYCES : 225- 237: ksrpl LheesGdvyd-TtL krltt P 16: 12.0102 13( 10) L-x(3,4)-L-x(5)-D Occurences: 13(10) ARO1_EMENI : 320- 331: rivkc LaaygLptslkD arirk ARO1_YEAST : 353- 363: hkktp Ldil-LkkmsiD kkneg ARO1_YEAST : 399- 410: dlrfi LtdetLvypfkD ipadq ARO1_YEAST : 1268- 1278: sisrv Lnnv-LtpvtsD llpns AROK_BACSU : 30- 41: ttigq LvakkLyrdfiD idqqi AROK_ECOLI : 23- 33: tigrq Laqq-LnmefyD sdqei AROK_HAEIN : 24- 34: tigrq Laqq-LnmdfiD sdavi AROK_LACLA : 135- 145: mkdys Lvad-LtidvtD kspeq AROK_PSEAE : 20- 31: stigr LlakeLhlafkD sdkei AROK_PSEAE : 21- 31: tigrl Lake-LhlafkD sdkei AROL_ECOLI : 22- 32: tvgma Lads-LnrrfvD tdqwl AROL_ERWCH : 22- 32: tvgre Lara-LgyefvD tdifm AROL_LYCES : 124- 134: tvgri Laet-LgysffD cdrli Q 17: 12.0102 12( 10) T-x(4)-L-x(0,1)-A Occurences: 12(10) ARO1_EMENI : 496- 502: asrfl TtvatL-A nsstv ARO1_EMENI : 1535- 1541: ykpqv TalmrL-A sdsgw ARO1_YEAST : 1437- 1444: igagg TsraaLyA lhslg AROK_BACSU : 25- 32: mgvgk TtigqLvA kklyr AROK_ECOLI : 18- 24: gagks TigrqL-A qqlnm AROK_ECOLI : 105- 111: vylet TiekqL-A rtqrd AROK_HAEIN : 19- 25: gagks TigrqL-A qqlnm AROK_LACLA : 15- 21: gagks TvaklL-A eeftd AROK_PSEAE : 16- 22: gagks TigrlL-A kelhl AROL_ECOLI : 17- 23: gcgkt TvgmaL-A dslnr AROL_ERWCH : 17- 23: gcgkt TvgreL-A ralgy AROL_LYCES : 119- 125: gcgkt TvgriL-A etlgy R 18: 12.0102 13( 10) L-x(4)-G-x(4,5)-T Occurences: 13(10) ARO1_EMENI : 367- 377: kkkiv LlsaiGtpye-T rasvv ARO1_YEAST : 309- 319: vkeae LsryfGilsp-T qvarl AROK_BACSU : 16- 26: erniv LigfmGvgkt-T igqlv AROK_ECOLI : 8- 18: krnif LvgpmGagks-T igrql AROK_ECOLI : 69- 79: kvine LtekqGivla-T gggsv AROK_HAEIN : 9- 19: krnif LvgpmGagks-T igrql AROK_HAEIN : 70- 80: riine LtqmqGivls-T gggav AROK_LACLA : 5- 15: msii LigfmGagks-T vakll AROK_PSEAE : 6- 16: mvnli LvgpmGagks-T igrll AROL_ECOLI : 7- 17: tqplf LigprGcgkt-T vgmal AROL_ERWCH : 22- 33: tvgre LaralGyefvdT difmq AROL_LYCES : 109- 119: grcvy LvgmmGcgkt-T vgril AROL_LYCES : 225- 235: ksrpl LheesGdvyd-T tlkrl AROL_LYCES : 225- 236: ksrpl LheesGdvydtT lkrlt S 19: 11.5102 15( 10) E-x(3)-R-x(1,3)-E Occurences: 15(10) ARO1_EMENI : 925- 933: rnael EilkRtlkE rsrgy ARO1_EMENI : 1160- 1168: diafp EdmlRavtE mkgfs ARO1_EMENI : 1519- 1527: avkai EhapRillE maykp ARO1_YEAST : 946- 954: wekfr EeetRifkE viqny ARO1_YEAST : 1021- 1027: veeir EvwnRr--E gwyke ARO1_YEAST : 1236- 1242: tavnf EdnlRl--E hfrdt AROK_BACSU : 63- 70: fekkg EdfsRkt-E keyil AROK_ECOLI : 55- 62: fdleg EegfRdr-E ekvin AROK_ECOLI : 55- 63: fdleg EegfRdreE kvine AROK_ECOLI : 125- 133: pllhv EtppRevlE alane AROK_HAEIN : 56- 63: fdleg EdgfRkr-E eriin AROK_HAEIN : 56- 64: fdleg EdgfRkreE riine AROK_LACLA : 48- 55: felfg EadfRki-E nevfe AROK_PSEAE : 53- 60: fdveg EvgfRel-E AROL_ECOLI : 47- 53: nmtva EiveRe--E wagfr AROL_ERWCH : 133- 140: iaeem EavlRer-E alyqd AROL_LYCES : 157- 164: felrg EsffRdn-E tevlh T 20: 11.5102 12( 10) F-x-D-x(1,3)-D Occurences: 12(10) ARO1_EMENI : 892- 896: alnrp FvDl--D telet ARO1_EMENI : 1129- 1135: sqggr FpDnahD aalel ARO1_EMENI : 1151- 1155: rsgce FvDl--D iafpe ARO1_YEAST : 408- 414: tlvyp FkDipaD qqkvv AROK_BACSU : 39- 43: klyrd FiDi--D qqiek AROK_ECOLI : 31- 35: qlnme FyDs--D qeiek AROK_HAEIN : 32- 36: qlnmd FiDs--D aviee AROK_LACLA : 24- 28: llaee FtDl--D kliee AROK_PSEAE : 29- 33: elhla FkDs--D keieq AROL_ECOLI : 30- 34: slnrr FvDt--D qwlqs AROL_ERWCH : 30- 34: algye FvDt--D ifmqh AROL_LYCES : 132- 136: tlgys FfDc--D rlieq Number of patterns evaluated by Pratt:576 Total running time: 1 seconds