------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 97 sequences from file SERPIN

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 97
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               22
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename              SERPIN.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    A1A1_HORSE     53
    A1A1_MOUSE    213
    A1A2_HORSE     51
    A1A2_MOUSE    413
    A1A4_HORSE     43
    A1AF_CAVPO    403
    A1AF_RABIT    413
    A1AS_CAVPO    405
    A1AT_BOMMO    392
    A1AT_BOVIN    416
    A1AT_CYPCA    372
    A1AT_DIDMA    410
    A1AT_HUMAN    418
    A1AT_MUSCR    412
    A1AT_PAPAN    409
      A1AT_RAT    411
    A1AT_SHEEP    416
    A1AU_HUMAN    420
    A2AP_BOVIN    492
    A2AP_HUMAN    491
    AACT_HUMAN    423
    ACH1_BOMMO    400
    ACH2_BOMMO    375
    ANGT_BOVIN     10
    ANGT_CHICK     10
    ANGT_HORSE     14
    ANGT_HUMAN    485
    ANGT_MOUSE    477
      ANGT_RAT    477
    ANGT_SHEEP     15
    ANT3_BOVIN    433
    ANT3_CHICK    105
    ANT3_HUMAN    464
    ANT3_MOUSE    465
    ANT3_SHEEP    465
     CBG_HUMAN    405
     CBG_MOUSE    397
     CBG_RABIT    383
       CBG_RAT    396
    COTR_CAVPO    410
    COTR_MOUSE    418
    CRMA_COWPX    341
    EP45_XENLA    436
     GDN_HUMAN    398
       GDN_RAT    397
    HEP2_HUMAN    499
    HS47_CHICK    405
    HS47_HUMAN    417
    HS47_MOUSE    417
      HS47_RAT    417
     IC1_HUMAN    500
    ILEU_HORSE    379
    ILEU_HUMAN    379
      ILEU_PIG    378
    IPSP_HUMAN    406
    KAIN_HUMAN     16
     KBP_MOUSE    417
       KBP_RAT    416
    MASP_HUMAN    375
    OVAL_CHICK    385
    OVAL_COTJA    382
    OVAX_CHICK    232
    OVAY_CHICK    388
    PAI1_BOVIN    402
    PAI1_HUMAN    402
    PAI1_MOUSE    402
      PAI1_RAT    402
    PAI2_HUMAN    415
    PAI2_MOUSE    415
      PAI2_RAT    416
    PEDF_HUMAN    418
    PRTZ_HORVU    399
     PTI_HUMAN    376
    SCCA_HUMAN    390
    SERA_MANSE    392
      SI21_RAT    214
    SPI1_COWPX    355
    SPI1_MYXVL    369
    SPI1_RABPU    357
      SPI1_RAT    403
    SPI1_VACCC    353
    SPI1_VACCV    353
     SPI1_VARV    357
    SPI2_RABPU    345
    SPI2_VACCV    345
     SPI2_VARV    344
      SPI3_RAT    408
    SPI3_VACCC    369
    SPI3_VACCV    369
     SPI3_VARV    373
    SPIB_VACCC    222
    THBG_HUMAN    415
      THBG_RAT    409
      UAB2_PIG    420
      UFBP_PIG    417
    UTMP_BOVIN    459
    UTMP_SHEEP    429

Pratt run started at Thu Feb  6 21:11:53 1997

No patterns found