------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 36 sequences from file SCP_AG5_PR1_SC7_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 36 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SCP_AG5_PR1_SC7_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: PR04_LYCES 159 PR06_LYCES 159 PR12_HORVU 164 PR13_HORVU 164 PR1A_TOBAC 168 PR1B_TOBAC 168 PR1C_TOBAC 168 PR1_ARATH 161 PR1_HORVU 164 PRB1_TOBAC 177 PRMS_MAIZE 167 SC14_SCHCO 214 SC7_SCHCO 204 SCP1_MOUSE 244 SCP2_MOUSE 241 SCP_RAT 246 TPX1_HUMAN 243 TPX1_MOUSE 243 VA3_SOLIN 212 VA3_SOLRI 20 VA51_VESCR 202 VA52_DOLMA 227 VA52_VESCR 202 VA53_DOLMA 215 VA5_DOLAR 203 VA5_POLAN 209 VA5_POLEX 205 VA5_POLFU 205 VA5_VESFL 204 VA5_VESGE 204 VA5_VESMC 204 VA5_VESPE 204 VA5_VESSQ 205 VA5_VESVI 206 VA5_VESVU 227 YKZ3_YEAST 329 Pratt run started at Thu Feb 6 21:11:43 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 88( 36) N-x(0,1)-A 2: 7.8401 97( 36) N-x(1,2)-A 3: 7.8401 86( 36) N-x(0,1)-L 4: 7.8401 98( 36) N-x(0,1)-Y 5: 7.3401 88( 36) T-x(0,2)-Q 6: 7.3401 103( 36) S-x(3,5)-N 7: 7.3401 95( 36) S-x(1,3)-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 9.2597 67( 36) N-x(0,1)-Y-x-[ADGNPST] B 2: 7.8401 88( 36) N-x(0,1)-A C 3: 7.8401 97( 36) N-x(1,2)-A D 4: 7.8401 86( 36) N-x(0,1)-L E 5: 7.3401 88( 36) T-x(0,2)-Q F 6: 7.3401 103( 36) S-x(3,5)-N G 7: 7.3401 95( 36) S-x(1,3)-N Best patterns with alignements: fitness hits(seqs) Pattern A 1: 9.2597 67( 36) N-x(0,1)-Y-x-[ADGNPST] Occurences: 67(36) PR04_LYCES : 59- 62: asraq N-YaN sragd PR04_LYCES : 103- 106: erpdy N-YaT nqcvg PR04_LYCES : 146- 149: wfisc N-YdP vgnwv PR06_LYCES : 59- 62: asraq N-YaN sragd PR06_LYCES : 103- 106: erpsy N-YaT nqcvg PR06_LYCES : 146- 149: wfisc N-YdP vgnwi PR12_HORVU : 59- 62: qafaq N-YaN qrind PR12_HORVU : 107- 110: ekkdy N-YgS ntcaa PR12_HORVU : 151- 154: vfitc N-YeP rgniv PR13_HORVU : 59- 62: qafaq N-YaN qrind PR13_HORVU : 151- 154: vfitc N-YeP rgniv PR1A_TOBAC : 65- 68: aayaq N-YaS qlaad PR1A_TOBAC : 155- 158: yvvsc N-YdP pgnyr PR1A_TOBAC : 161- 164: ydppg N-YrG espy PR1B_TOBAC : 65- 68: aayaq N-YvS qlaad PR1B_TOBAC : 155- 158: yvvsc N-YdP pgnvi PR1C_TOBAC : 65- 68: aayaq N-YaS qlaad PR1C_TOBAC : 155- 158: yivsc N-YdP pgnvi PR1_ARATH : 107- 110: ekany N-YaA ntcng PR1_ARATH : 148- 151: tiisc N-YdP rgnyv PR1_ARATH : 154- 157: ydprg N-YvN ekpy PR1_HORVU : 59- 62: qafaq N-YaN qrind PR1_HORVU : 151- 154: vfitc N-YeP rgnii PRB1_TOBAC : 58- 61: aayaq N-YaN qrigd PRB1_TOBAC : 146- 149: ffitc N-YdP pgnfi PRMS_MAIZE : 110- 113: ekqwy N-YaT nscaa PRMS_MAIZE : 154- 157: vfiic N-YeP rgnia SC14_SCHCO : 194- 197: wyyvc N-YdP kgnvv SC7_SCHCO : 184- 188: wyyvc NyYrP gnvsp SCP1_MOUSE : 66- 69: lkmew N-YdA qvnaq SCP1_MOUSE : 118- 122: iqgwy NeYkD ltydv SCP1_MOUSE : 175- 178: ycpvg N-YqG rlytp SCP2_MOUSE : 66- 69: lnmew N-YdA qvnaq SCP2_MOUSE : 175- 178: ycpvl N-YsG hypsr SCP_RAT : 106- 109: nlfma N-YpA swssv SCP_RAT : 177- 180: ycpgg N-YvG rlysp SCP_RAT : 213- 216: ceyed N-YsN cgdlk TPX1_HUMAN : 97- 101: trcge NlYmS sdpts TPX1_MOUSE : 98- 102: ircge NlYmS tdptl VA3_SOLIN : 2- 5: t N-YcN lqsck VA3_SOLIN : 195- 198: hylvc N-YgP agnvl VA3_SOLRI : 2- 5: t N-YxN lqsxk VA51_VESCR : 186- 189: hylvc N-YgP agnvg VA52_DOLMA : 211- 214: hylvc N-YgP ggndf VA52_VESCR : 186- 189: hylvc N-YgP agnvg VA53_DOLMA : 131- 135: asttg NsYaT mskli VA53_DOLMA : 199- 202: hylvc N-YgP agnym VA53_DOLMA : 205- 208: ygpag N-YmD qpiye VA5_DOLAR : 120- 124: asttg NsYqT msyli VA5_DOLAR : 187- 190: hylvc N-YgP agnym VA5_DOLAR : 193- 196: ygpag N-YmN qpvye VA5_POLAN : 146- 149: evkdf N-YnT gitkq VA5_POLAN : 193- 196: hylic N-YgP agnyl VA5_POLAN : 199- 202: ygpag N-YlG qlpyt VA5_POLEX : 142- 145: evkdf N-YnT gitkq VA5_POLEX : 189- 192: hylic N-YgP agnyl VA5_POLEX : 195- 198: ygpag N-YlG qlpyt VA5_POLFU : 189- 192: hylic N-YgP agnyl VA5_POLFU : 195- 198: ygpag N-YlG qlpyt VA5_VESFL : 188- 191: hylvc N-YgP sgnfq VA5_VESGE : 188- 191: hylvc N-YgP sgnfg VA5_VESMC : 188- 191: hylvc N-YgP sgnfq VA5_VESPE : 188- 191: hylvc N-YgP sgnfg VA5_VESSQ : 189- 192: hylvc N-YgP agnfg VA5_VESVI : 190- 193: hylvc N-YgP sgnfr VA5_VESVU : 211- 214: hylvc N-YgP sgnfm YKZ3_YEAST : 225- 228: atyaq N-YaD sydcs B 2: 7.8401 88( 36) N-x(0,1)-A Occurences: 88(36) PR04_LYCES : 36- 38: ylavh NdA raqvg PR04_LYCES : 52- 54: mswda NlA sraqn PR04_LYCES : 59- 61: asraq NyA nsrag PR04_LYCES : 78- 80: sgage NlA kgggd PR04_LYCES : 103- 105: erpdy NyA tnqcv PR06_LYCES : 36- 38: ylavh NdA raqvg PR06_LYCES : 52- 54: mswda NlA sraqn PR06_LYCES : 59- 61: asraq NyA nsrag PR06_LYCES : 78- 80: sgage NlA kgggd PR06_LYCES : 103- 105: erpsy NyA tnqcv PR12_HORVU : 36- 37: yvsph N-A arsav PR12_HORVU : 36- 38: yvsph NaA rsavg PR12_HORVU : 59- 61: qafaq NyA nqrin PR13_HORVU : 36- 37: yvsph N-A araav PR13_HORVU : 36- 38: yvsph NaA raavg PR13_HORVU : 59- 61: qafaq NyA nqrin PR1A_TOBAC : 42- 44: yldah NtA radvg PR1A_TOBAC : 65- 67: aayaq NyA sqlaa PR1A_TOBAC : 86- 88: gqyge NlA egsgd PR1B_TOBAC : 42- 44: yldah NtA radvg PR1B_TOBAC : 86- 88: gqyge NlA qgsgd PR1C_TOBAC : 42- 44: yldah NtA radvg PR1C_TOBAC : 65- 67: aayaq NyA sqlaa PR1C_TOBAC : 86- 88: gqyge NlA wgsgd PR1_ARATH : 38- 40: ylrvh NqA rgavg PR1_ARATH : 82- 84: gpyge NlA wgsgd PR1_ARATH : 107- 109: ekany NyA antcn PR1_HORVU : 36- 37: yvsph N-A arsav PR1_HORVU : 36- 38: yvsph NaA rsavg PR1_HORVU : 59- 61: qafaq NyA nqrin PRB1_TOBAC : 35- 36: ylnph N-A arrqv PRB1_TOBAC : 35- 37: ylnph NaA rrqvg PRB1_TOBAC : 58- 60: aayaq NyA nqrig PRB1_TOBAC : 79- 81: gpyge NlA aafpq PRB1_TOBAC : 88- 89: afpql N-A agavk PRB1_TOBAC : 88- 90: afpql NaA gavkm PRMS_MAIZE : 39- 41: yltpq NsA raavg PRMS_MAIZE : 110- 112: ekqwy NyA tnsca PRMS_MAIZE : 160- 162: yeprg NiA gmkpy SC14_SCHCO : 4- 6: mkl NiA illaa SC14_SCHCO : 95- 96: nqdlq N-A amswa SC14_SCHCO : 95- 97: nqdlq NaA mswas SC14_SCHCO : 114- 116: nrggq NiA arynt SC14_SCHCO : 144- 145: ergey N-A ttfkg SC7_SCHCO : 49- 51: adala NrA appqs SC7_SCHCO : 104- 106: snsgq NlA awfsp SC7_SCHCO : 127- 128: gvggw N-A eepdy SCP1_MOUSE : 72- 73: ydaqv N-A qqwad SCP2_MOUSE : 72- 73: ydaqv N-A qqrad SCP_RAT : 74- 75: hdayv N-A qkwan TPX1_HUMAN : 70- 71: revtt N-A qrwan TPX1_HUMAN : 131- 132: gpksp N-A vvghy TPX1_HUMAN : 219- 221: cdslk NtA gcehe TPX1_MOUSE : 71- 72: iqatt N-A qkwan TPX1_MOUSE : 131- 133: vgakp NsA vghyt VA3_SOLIN : 12- 14: qsckr NnA ihtmc VA3_SOLIN : 13- 14: sckrn N-A ihtmc VA3_SOLIN : 114- 116: favgq NiA atsss VA3_SOLRI : 12- 14: qsxkx NnA ixtmx VA3_SOLRI : 13- 14: sxkxn N-A ixtmx VA51_VESCR : 103- 105: hdncr NsA kysvg VA51_VESCR : 112- 114: ysvgq NiA egstt VA52_DOLMA : 77- 79: ndfrq NvA kglet VA52_DOLMA : 126- 128: hddcr NtA kyqvg VA52_DOLMA : 135- 137: yqvgq NiA isstt VA52_VESCR : 103- 105: hdncr NsA kysvg VA52_VESCR : 112- 114: ysvgq NiA egsts VA53_DOLMA : 122- 124: yqvgq NvA iastt VA5_DOLAR : 102- 104: hdqcr NtA kypvg VA5_DOLAR : 111- 113: ypvgq NvA iastt VA5_POLAN : 31- 33: tkpsk NcA gkvik VA5_POLAN : 110- 112: hdkcr NtA kypvg VA5_POLAN : 119- 121: ypvgq NiA yaggs VA5_POLAN : 155- 157: gitkq NfA kighy VA5_POLEX : 27- 29: tkpsk NcA gkvik VA5_POLEX : 106- 108: hdkcr NtA kypvg VA5_POLEX : 115- 117: ypvgq NiA yaggs VA5_POLEX : 151- 153: gitkq NfA kighy VA5_POLFU : 27- 29: tkpsk NcA dkvik VA5_POLFU : 106- 108: hdkcr NtA kyqvg VA5_POLFU : 115- 117: yqvgq NiA yaggs VA5_VESFL : 112- 114: yqvgq NvA ltgst VA5_VESGE : 25- 27: eslkp NcA nkkvv VA5_VESGE : 112- 114: ypvgq NvA ltgst VA5_VESMC : 112- 114: yqvgq NvA ltgst VA5_VESPE : 112- 114: ypvgq NvA ltgst VA5_VESSQ : 86- 88: nnela NiA qiwas VA5_VESSQ : 113- 115: ynvgq NiA vssst VA5_VESVI : 87- 89: ndela NiA qvwas VA5_VESVI : 114- 116: ypvgq NiA krstt VA5_VESVU : 135- 137: yqvgq NvA ltgst YKZ3_YEAST : 76- 77: pivva N-A qvdsi YKZ3_YEAST : 225- 227: atyaq NyA dsydc YKZ3_YEAST : 246- 248: gpyge NlA lgygt C 3: 7.8401 97( 36) N-x(1,2)-A Occurences: 97(36) PR04_LYCES : 36- 38: ylavh Nd-A raqvg PR04_LYCES : 52- 54: mswda Nl-A sraqn PR04_LYCES : 59- 61: asraq Ny-A nsrag PR04_LYCES : 62- 65: aqnya NsrA gdcnl PR04_LYCES : 78- 80: sgage Nl-A kgggd PR04_LYCES : 103- 105: erpdy Ny-A tnqcv PR06_LYCES : 36- 38: ylavh Nd-A raqvg PR06_LYCES : 52- 54: mswda Nl-A sraqn PR06_LYCES : 59- 61: asraq Ny-A nsrag PR06_LYCES : 62- 65: aqnya NsrA gdcnl PR06_LYCES : 78- 80: sgage Nl-A kgggd PR06_LYCES : 103- 105: erpsy Ny-A tnqcv PR12_HORVU : 36- 38: yvsph Na-A rsavg PR12_HORVU : 59- 61: qafaq Ny-A nqrin PR12_HORVU : 111- 114: ynygs NtcA agkvc PR13_HORVU : 36- 38: yvsph Na-A raavg PR13_HORVU : 59- 61: qafaq Ny-A nqrin PR13_HORVU : 111- 114: ydygs NtcA agkvc PR1A_TOBAC : 42- 44: yldah Nt-A radvg PR1A_TOBAC : 65- 67: aayaq Ny-A sqlaa PR1A_TOBAC : 86- 88: gqyge Nl-A egsgd PR1A_TOBAC : 116- 119: ydhds NtcA qgqvc PR1B_TOBAC : 42- 44: yldah Nt-A radvg PR1B_TOBAC : 57- 60: pltwd NgvA ayaqn PR1B_TOBAC : 86- 88: gqyge Nl-A qgsgd PR1B_TOBAC : 116- 119: ydhds NtcA qgqvc PR1C_TOBAC : 42- 44: yldah Nt-A radvg PR1C_TOBAC : 65- 67: aayaq Ny-A sqlaa PR1C_TOBAC : 86- 88: gqyge Nl-A wgsgd PR1C_TOBAC : 116- 119: yahds NtcA qgqvc PR1_ARATH : 38- 40: ylrvh Nq-A rgavg PR1_ARATH : 82- 84: gpyge Nl-A wgsgd PR1_ARATH : 107- 109: ekany Ny-A antcn PR1_ARATH : 107- 110: ekany NyaA ntcng PR1_HORVU : 36- 38: yvsph Na-A rsavg PR1_HORVU : 59- 61: qafaq Ny-A nqrin PR1_HORVU : 111- 114: ydygs NtcA agkvc PRB1_TOBAC : 35- 37: ylnph Na-A rrqvg PRB1_TOBAC : 50- 53: pmtwd NrlA ayaqn PRB1_TOBAC : 58- 60: aayaq Ny-A nqrig PRB1_TOBAC : 79- 81: gpyge Nl-A aafpq PRB1_TOBAC : 79- 82: gpyge NlaA afpql PRB1_TOBAC : 88- 90: afpql Na-A gavkm PRMS_MAIZE : 5- 8: meas NklA vlllw PRMS_MAIZE : 39- 41: yltpq Ns-A raavg PRMS_MAIZE : 110- 112: ekqwy Ny-A tnsca PRMS_MAIZE : 114- 117: ynyat NscA agkvc PRMS_MAIZE : 160- 162: yeprg Ni-A gmkpy SC14_SCHCO : 4- 6: mkl Ni-A illaa SC14_SCHCO : 95- 97: nqdlq Na-A mswas SC14_SCHCO : 114- 116: nrggq Ni-A arynt SC14_SCHCO : 114- 117: nrggq NiaA ryntr SC14_SCHCO : 120- 123: iaary NtrA nfpre SC7_SCHCO : 49- 51: adala Nr-A appqs SC7_SCHCO : 49- 52: adala NraA ppqse SC7_SCHCO : 67- 70: lkahn NerA qhgav SC7_SCHCO : 104- 106: snsgq Nl-A awfsp SC7_SCHCO : 104- 107: snsgq NlaA wfspq SCP1_MOUSE : 66- 69: lkmew NydA qvnaq SCP2_MOUSE : 66- 69: lnmew NydA qvnaq SCP_RAT : 106- 109: nlfma NypA swssv TPX1_HUMAN : 219- 221: cdslk Nt-A gcehe TPX1_MOUSE : 131- 133: vgakp Ns-A vghyt VA3_SOLIN : 12- 14: qsckr Nn-A ihtmc VA3_SOLIN : 114- 116: favgq Ni-A atsss VA3_SOLIN : 114- 117: favgq NiaA tsssg VA3_SOLRI : 12- 14: qsxkx Nn-A ixtmx VA51_VESCR : 103- 105: hdncr Ns-A kysvg VA51_VESCR : 112- 114: ysvgq Ni-A egstt VA52_DOLMA : 77- 79: ndfrq Nv-A kglet VA52_DOLMA : 126- 128: hddcr Nt-A kyqvg VA52_DOLMA : 135- 137: yqvgq Ni-A isstt VA52_VESCR : 103- 105: hdncr Ns-A kysvg VA52_VESCR : 112- 114: ysvgq Ni-A egsts VA53_DOLMA : 122- 124: yqvgq Nv-A iastt VA53_DOLMA : 131- 134: asttg NsyA tmskl VA5_DOLAR : 102- 104: hdqcr Nt-A kypvg VA5_DOLAR : 111- 113: ypvgq Nv-A iastt VA5_POLAN : 31- 33: tkpsk Nc-A gkvik VA5_POLAN : 110- 112: hdkcr Nt-A kypvg VA5_POLAN : 119- 121: ypvgq Ni-A yaggs VA5_POLAN : 155- 157: gitkq Nf-A kighy VA5_POLEX : 27- 29: tkpsk Nc-A gkvik VA5_POLEX : 106- 108: hdkcr Nt-A kypvg VA5_POLEX : 115- 117: ypvgq Ni-A yaggs VA5_POLEX : 151- 153: gitkq Nf-A kighy VA5_POLFU : 27- 29: tkpsk Nc-A dkvik VA5_POLFU : 106- 108: hdkcr Nt-A kyqvg VA5_POLFU : 115- 117: yqvgq Ni-A yaggs VA5_VESFL : 112- 114: yqvgq Nv-A ltgst VA5_VESGE : 25- 27: eslkp Nc-A nkkvv VA5_VESGE : 112- 114: ypvgq Nv-A ltgst VA5_VESMC : 112- 114: yqvgq Nv-A ltgst VA5_VESPE : 112- 114: ypvgq Nv-A ltgst VA5_VESSQ : 54- 57: hndfr NkvA rglet VA5_VESSQ : 82- 85: nlvwn NelA niaqi VA5_VESSQ : 86- 88: nnela Ni-A qiwas VA5_VESSQ : 113- 115: ynvgq Ni-A vssst VA5_VESVI : 87- 89: ndela Ni-A qvwas VA5_VESVI : 114- 116: ypvgq Ni-A krstt VA5_VESVU : 135- 137: yqvgq Nv-A ltgst YKZ3_YEAST : 225- 227: atyaq Ny-A dsydc YKZ3_YEAST : 246- 248: gpyge Nl-A lgygt D 4: 7.8401 86( 36) N-x(0,1)-L Occurences: 86(36) PR04_LYCES : 52- 53: mswda N-L asraq PR04_LYCES : 69- 70: ragdc N-L ihsga PR04_LYCES : 78- 79: sgage N-L akggg PR06_LYCES : 52- 53: mswda N-L asraq PR06_LYCES : 69- 70: ragdc N-L ihsga PR06_LYCES : 78- 79: sgage N-L akggg PR12_HORVU : 20- 21: aaamv N-L sqaqn PR13_HORVU : 20- 21: saamv N-L sqaqn PR1A_TOBAC : 75- 76: laadc N-L vhshg PR1A_TOBAC : 86- 87: gqyge N-L aegsg PR1B_TOBAC : 75- 76: laadc N-L vhshg PR1B_TOBAC : 86- 87: gqyge N-L aqgsg PR1C_TOBAC : 75- 76: laadc N-L vhshg PR1C_TOBAC : 86- 87: gqyge N-L awgsg PR1_ARATH : 82- 83: gpyge N-L awgsg PR1_HORVU : 20- 21: aaamv N-L sqaqn PRB1_TOBAC : 50- 52: pmtwd NrL aayaq PRB1_TOBAC : 79- 80: gpyge N-L aaafp PRMS_MAIZE : 5- 7: meas NkL avlll SC14_SCHCO : 164- 165: wkhsr N-L gcaay SC7_SCHCO : 104- 105: snsgq N-L aawfs SCP1_MOUSE : 26- 28: dssqe NrL eklst SCP1_MOUSE : 47- 49: ivskh NqL rrmvs SCP1_MOUSE : 93- 94: elrtt N-L rcgen SCP1_MOUSE : 99- 100: lrcge N-L fmssy SCP1_MOUSE : 160- 162: aecpk NpL ryyyv SCP2_MOUSE : 26- 28: dnsqe NsL eklst SCP2_MOUSE : 47- 49: ivskh NqL rrkvs SCP2_MOUSE : 93- 94: elrtt N-L kcgen SCP2_MOUSE : 99- 100: lkcge N-L fmssy SCP2_MOUSE : 147- 148: vvwks N-L qvacg SCP2_MOUSE : 160- 162: aecpe NpL ryfyv SCP_RAT : 32- 33: drdle N-L sttkl SCP_RAT : 49- 51: iinkh NqL rrtvs SCP_RAT : 101- 102: lkcge N-L fmany TPX1_HUMAN : 45- 47: ivnkh NeL rkavs TPX1_HUMAN : 57- 59: sppas NmL kmews TPX1_HUMAN : 97- 98: trcge N-L ymssd TPX1_MOUSE : 33- 35: tsllt NqL qvqre TPX1_MOUSE : 46- 48: ivnkh NeL rrsvn TPX1_MOUSE : 98- 99: ircge N-L ymstd TPX1_MOUSE : 160- 161: cpnqd N-L kyfyv TPX1_MOUSE : 198- 200: pnnce NgL ctnsc VA3_SOLIN : 5- 6: tnyc N-L qsckr VA3_SOLIN : 51- 53: ivnkh NeL rqrva VA3_SOLIN : 78- 79: avkmp N-L twdpe VA3_SOLIN : 155- 157: fpsdd NiL mkveh VA3_SOLIN : 201- 203: ygpag NvL gapiy VA3_SOLRI : 5- 6: tnyx N-L qsxkx VA51_VESCR : 41- 42: ltkqe N-L eilkq VA51_VESCR : 75- 77: paksm NtL vwnde VA51_VESCR : 147- 149: ygspk NkL nkvgh VA52_DOLMA : 17- 18: iitii N-L sfget VA52_DOLMA : 98- 100: paknm NvL vwnde VA52_VESCR : 41- 42: ltkqe N-L eilkq VA52_VESCR : 75- 77: paksm NtL vwnde VA52_VESCR : 147- 149: ygspk NkL nkvgh VA53_DOLMA : 4- 5: pii N-L sfgea VA53_DOLMA : 85- 87: paknm NvL vwnde VA5_DOLAR : 74- 75: paknm N-L lvwnd VA5_DOLAR : 74- 76: paknm NlL vwnde VA5_POLAN : 81- 83: aasdm NdL vwnde VA5_POLAN : 127- 128: yaggs N-L pdvvs VA5_POLAN : 199- 201: ygpag NyL gqlpy VA5_POLEX : 77- 79: aasdm NdL vwnde VA5_POLEX : 195- 197: ygpag NyL gqlpy VA5_POLFU : 77- 79: aasdm NnL vwnde VA5_POLFU : 78- 79: asdmn N-L vwnde VA5_POLFU : 195- 197: ygpag NyL gqlpy VA5_VESFL : 76- 77: aknmk N-L vwnde VA5_VESFL : 150- 152: kfsgn NfL ktghy VA5_VESGE : 76- 77: aknmk N-L vwsde VA5_VESGE : 150- 152: kfsen NfL kighy VA5_VESMC : 76- 77: aknmk N-L vwsde VA5_VESMC : 150- 152: kfsen NfL kighy VA5_VESPE : 76- 77: aknmk N-L vwnde VA5_VESSQ : 76- 78: paknm NnL vwnne VA5_VESSQ : 77- 78: aknmn N-L vwnne VA5_VESSQ : 82- 84: nlvwn NeL aniaq VA5_VESSQ : 129- 130: yenvg N-L vkawe VA5_VESVI : 77- 79: paknm NnL vwnde VA5_VESVI : 78- 79: aknmn N-L vwnde VA5_VESVI : 151- 153: iewsk NnL kktgh VA5_VESVI : 152- 153: ewskn N-L kktgh VA5_VESVU : 99- 100: aknmk N-L vwnde YKZ3_YEAST : 235- 236: ydcsg N-L vhsgg YKZ3_YEAST : 246- 247: gpyge N-L algyg E 5: 7.3401 88( 36) T-x(0,2)-Q Occurences: 88(36) PR04_LYCES : 106- 108: dynya Tn-Q cvggk PR04_LYCES : 119- 120: mcghy T--Q vvwrn PR06_LYCES : 106- 108: synya Tn-Q cvggk PR06_LYCES : 119- 120: kcrhy T--Q vvwrn PR12_HORVU : 51- 54: avsws TklQ afaqn PR12_HORVU : 123- 124: vcghy T--Q vvwra PR13_HORVU : 51- 54: avsws TklQ afaqn PR13_HORVU : 123- 124: vcghy T--Q vvwra PR1A_TOBAC : 117- 120: dhdsn TcaQ gqvcg PR1A_TOBAC : 128- 129: vcghy T--Q vvwrn PR1B_TOBAC : 117- 120: dhdsn TcaQ gqvcg PR1B_TOBAC : 128- 129: vcghy T--Q vvwrn PR1C_TOBAC : 117- 120: ahdsn TcaQ gqvcg PR1C_TOBAC : 128- 129: vcghy T--Q vvwrn PR1_ARATH : 121- 122: vcghy T--Q vvwrk PR1_HORVU : 51- 54: avsws TklQ afaqn PR1_HORVU : 123- 124: vcghy T--Q vvwra PRB1_TOBAC : 119- 120: vcghy T--Q vvwrn PRMS_MAIZE : 36- 38: pqdyl Tp-Q nsara PRMS_MAIZE : 54- 57: pvtws TklQ qfaek PRMS_MAIZE : 126- 127: vcghy T--Q vvwra SC14_SCHCO : 63- 65: qdtng Ts-Q deidq SC14_SCHCO : 155- 156: gaghw T--Q vvwkh SC7_SCHCO : 145- 146: gaghw T--Q vvwks SCP1_MOUSE : 140- 141: vvghy T--Q vvwns SCP1_MOUSE : 147- 149: vvwns Tf-Q vacgv SCP2_MOUSE : 140- 141: vvghh T--Q vvwks SCP2_MOUSE : 238- 240: krcla Tc-Q c SCP_RAT : 142- 143: kvghy T--Q vvwns TPX1_HUMAN : 31- 33: ftall Tt-Q lqvqr TPX1_HUMAN : 32- 33: tallt T--Q lqvqr TPX1_HUMAN : 32- 35: tallt TqlQ vqrei TPX1_HUMAN : 69- 72: srevt TnaQ rwank TPX1_HUMAN : 79- 81: wankc Tl-Q hsdpe TPX1_HUMAN : 138- 139: vvghy T--Q lvwys TPX1_HUMAN : 145- 147: lvwys Ty-Q vgcgi TPX1_HUMAN : 181- 184: mnrkn TpyQ qgtpc TPX1_MOUSE : 32- 34: ftsll Tn-Q lqvqr TPX1_MOUSE : 70- 73: siqat TnaQ kwank TPX1_MOUSE : 110- 113: ptlws TviQ swyne TPX1_MOUSE : 138- 139: avghy T--Q lvwys TPX1_MOUSE : 181- 184: vmkks TpyQ qgtpc TPX1_MOUSE : 230- 233: hellk TkcQ atclc VA3_SOLIN : 17- 20: nnaih TmcQ ytspt VA3_SOLIN : 87- 90: dpela TiaQ rwanq VA3_SOLIN : 164- 165: kvehy T--Q ivwak VA3_SOLRI : 17- 20: nnaix TmxQ VA51_VESCR : 37- 39: kasgl Tk-Q enlei VA51_VESCR : 156- 157: kvghy T--Q mvwak VA52_DOLMA : 142- 145: aisst TatQ fdrps VA52_DOLMA : 144- 145: sstta T--Q fdrps VA52_DOLMA : 181- 182: kvghy T--Q mvwgk VA52_VESCR : 37- 39: kasgl Tk-Q enlei VA52_VESCR : 156- 157: kvghy T--Q mvwak VA53_DOLMA : 169- 170: kvghy T--Q mvwgk VA5_DOLAR : 157- 158: kvghy T--Q mvwgk VA5_POLAN : 18- 21: psgih TvcQ ygest VA5_POLAN : 152- 154: yntgi Tk-Q nfaki VA5_POLAN : 163- 164: kighy T--Q mvwgk VA5_POLEX : 14- 17: psgih TvcQ ygest VA5_POLEX : 148- 150: yntgi Tk-Q nfaki VA5_POLEX : 159- 160: kighy T--Q mvwgk VA5_POLFU : 14- 17: ssgih TvcQ ygest VA5_POLFU : 148- 150: ynkgi Tk-Q nfgkv VA5_POLFU : 159- 160: kvghy T--Q miwak VA5_VESFL : 37- 39: vsygl Tk-Q ekqdi VA5_VESFL : 158- 159: ktghy T--Q mvwan VA5_VESGE : 37- 39: vaygl Tk-Q ekqdi VA5_VESGE : 158- 159: kighy T--Q mvwan VA5_VESMC : 37- 39: vsygl Tk-Q ekqdi VA5_VESMC : 158- 159: kighy T--Q mvwan VA5_VESPE : 158- 159: kighy T--Q mvwan VA5_VESSQ : 38- 39: ksygv T--Q aekqe VA5_VESSQ : 159- 160: kighy T--Q mvwak VA5_VESVI : 160- 161: ktghy T--Q mvwak VA5_VESVU : 60- 62: vsygl Tk-Q ekqdi VA5_VESVU : 181- 182: ktghy T--Q mvwan YKZ3_YEAST : 24- 27: apvav TvtQ hvhqa YKZ3_YEAST : 26- 27: vavtv T--Q hvhqa YKZ3_YEAST : 57- 58: fitkg T--Q tasas YKZ3_YEAST : 116- 118: stata Ti-Q avqts YKZ3_YEAST : 127- 128: tsasa T--Q ddvtt YKZ3_YEAST : 139- 140: tltss T--Q ptstt YKZ3_YEAST : 176- 179: sptta TttQ stass YKZ3_YEAST : 177- 179: pttat Tt-Q stass YKZ3_YEAST : 178- 179: ttatt T--Q stass YKZ3_YEAST : 185- 186: stass T--Q ssssd YKZ3_YEAST : 221- 224: sdtla TyaQ nyads YKZ3_YEAST : 282- 283: saghf T--Q vvwkg F 6: 7.3401 103( 36) S-x(3,5)-N Occurences: 103(36) PR04_LYCES : 21- 26: laifh Sceaq-N spqdy PR04_LYCES : 48- 52: gvgpm Swda--N lasra PR04_LYCES : 55- 59: danla Sraq--N yansr PR04_LYCES : 63- 69: qnyan SragdcN lihsg PR04_LYCES : 73- 78: cnlih Sgage-N lakgg PR04_LYCES : 97- 103: vqlwv SerpdyN yatnq PR06_LYCES : 21- 26: laifh Sceaq-N spqdy PR06_LYCES : 48- 52: gvgpm Swda--N lasra PR06_LYCES : 55- 59: danla Sraq--N yansr PR06_LYCES : 63- 69: qnyan SragdcN lihsg PR06_LYCES : 73- 78: cnlih Sgage-N lakgg PR06_LYCES : 97- 103: vqlwv SerpsyN yatnq PR06_LYCES : 101- 107: vserp SynyatN qcvgg PR12_HORVU : 22- 26: amvnl Sqaq--N spqdy PR13_HORVU : 15- 20: lalam Saamv-N lsqaq PR13_HORVU : 22- 26: amvnl Sqaq--N spqdy PR13_HORVU : 93- 97: adwka Sdav--N swvse PR1A_TOBAC : 27- 32: lvish Scraq-N sqqdy PR1B_TOBAC : 27- 32: liish Sshaq-N sqqdy PR1B_TOBAC : 28- 32: iishs Shaq--N sqqdy PR1C_TOBAC : 27- 32: liish Schaq-N sqqdy PR1_ARATH : 91- 97: gsgdl SgvsavN mwvse PR1_ARATH : 101- 105: vnmwv Seka--N ynyaa PR1_ARATH : 101- 107: vnmwv SekanyN yaant PR1_HORVU : 22- 26: amvnl Sqaq--N spqdy PR1_HORVU : 93- 97: adwka Sdav--N swvse PRB1_TOBAC : 20- 25: ailih Sskaq-N spqdy PRB1_TOBAC : 21- 25: ilihs Skaq--N spqdy PRB1_TOBAC : 26- 32: skaqn SpqdylN phnaa PRMS_MAIZE : 25- 29: tavhp Syse--N spqdy SC14_SCHCO : 205- 211: nvvpa SkyypsN vqp SC7_SCHCO : 43- 49: didsr SadalaN raapp SC7_SCHCO : 99- 104: ciweh Snsgq-N laawf SC7_SCHCO : 110- 114: laawf Spqa--N kpmni SCP1_MOUSE : 22- 26: sllqd Ssqe--N rlekl SCP2_MOUSE : 17- 22: avlpp Sllqd-N sqens SCP2_MOUSE : 56- 62: rkvsp SgsdllN mewny SCP2_MOUSE : 58- 62: vspsg Sdll--N mewny SCP_RAT : 194- 198: gepcd Scpg--N cedgl SCP_RAT : 207- 213: glctn SceyedN ysncg TPX1_HUMAN : 52- 57: lrkav Sppas-N mlkme TPX1_HUMAN : 64- 70: lkmew SrevttN aqrwa TPX1_HUMAN : 91- 97: edrkt StrcgeN lymss TPX1_MOUSE : 29- 33: dpdft Sllt--N qlqvq TPX1_MOUSE : 65- 71: lkmew SiqattN aqkwa TPX1_MOUSE : 114- 119: stviq Swyne-N edfvy TPX1_MOUSE : 191- 195: gtpca Scpn--N cengl VA3_SOLIN : 8- 12: ycnlq Sckr--N naiht VA3_SOLIN : 8- 13: ycnlq Sckrn-N aihtm VA3_SOLIN : 119- 124: niaat Sssgk-N kstpn VA3_SOLIN : 120- 124: iaats Ssgk--N kstpn VA3_SOLIN : 149- 155: nrwis SfpsddN ilmkv VA3_SOLRI : 8- 12: yxnlq Sxkx--N naixt VA3_SOLRI : 8- 13: yxnlq Sxkxn-N aixtm VA51_VESCR : 21- 25: ckygt Stkp--N cgknv VA51_VESCR : 108- 112: nsaky Svgq--N iaegs VA51_VESCR : 117- 122: niaeg Sttad-N fgsvs VA51_VESCR : 144- 150: dyqyg SpknklN kvghy VA51_VESCR : 170- 176: eigcg SikyieN gwhrh VA52_DOLMA : 19- 24: tiinl Sfget-N nycki VA52_DOLMA : 19- 25: tiinl SfgetnN yckik VA52_DOLMA : 44- 48: ckfgt Smkp--N cgrnv VA52_VESCR : 21- 25: ckygt Stkp--N cgknv VA52_VESCR : 108- 112: nsaky Svgq--N iaegs VA52_VESCR : 117- 122: niaeg Stsad-N fvnvs VA52_VESCR : 119- 125: aegst SadnfvN vsnmv VA52_VESCR : 144- 150: dyqyg SpknklN kvghy VA53_DOLMA : 6- 11: piinl Sfgea-N nycki VA53_DOLMA : 6- 12: piinl SfgeanN yckik VA53_DOLMA : 31- 35: ckfgt Smkp--N cgskl VA53_DOLMA : 47- 52: kvhgv Sndek-N eivnr VA53_DOLMA : 127- 131: nvaia Sttg--N syatm VA53_DOLMA : 183- 189: eigcg SvkyieN nwhth VA5_DOLAR : 20- 24: ckygt Smkp--N cggki VA5_DOLAR : 32- 37: gkivk Sygvt-N dekne VA5_DOLAR : 116- 120: nvaia Sttg--N syqtm VA5_DOLAR : 171- 177: eigcg SvkyieN kwhth VA5_POLAN : 25- 31: cqyge StkpskN cagkv VA5_POLAN : 177- 183: eigcg SlkymeN nmqnh VA5_POLEX : 21- 27: cqyge StkpskN cagkv VA5_POLEX : 173- 179: eigcg SlkyieN kmqnh VA5_POLFU : 21- 27: cqyge StkpskN cadkv VA5_POLFU : 74- 78: pqpaa Sdmn--N lvwnd VA5_POLFU : 173- 179: eigcg SlkymkN nmqhh VA5_VESFL : 21- 25: ackyg Slkp--N cgnkv VA5_VESFL : 192- 197: cnygp Sgnfq-N eelyq VA5_VESGE : 21- 25: ackye Slkp--N cankk VA5_VESGE : 192- 197: cnygp Sgnfg-N eelyq VA5_VESMC : 21- 25: ackyg Slkp--N cgnkk VA5_VESMC : 118- 124: valtg StaavyN dpvkl VA5_VESMC : 192- 197: cnygp Sgnfq-N eelyq VA5_VESPE : 21- 25: ackyg Slkp--N cgnki VA5_VESPE : 147- 152: pkkkf Sennf-N kighy VA5_VESPE : 172- 178: eigcg SikyiqN ewhkh VA5_VESPE : 192- 197: cnygp Sgnfg-N eelyq VA5_VESSQ : 22- 26: ckygt Stkp--N cgnmv VA5_VESSQ : 146- 150: fnpti Sweq--N efkki VA5_VESSQ : 173- 179: eigcg SikyvdN nwyth VA5_VESVI : 23- 27: ckygt Stkp--N cgkmv VA5_VESVI : 194- 199: cnygp Sgnfr-N eklye VA5_VESVU : 44- 48: ackyg Slkp--N cgnkv VA5_VESVU : 215- 220: cnygp Sgnfm-N eelyq YKZ3_YEAST : 193- 198: sssdf Stsmv-N ehntk YKZ3_YEAST : 195- 201: sdfst SmvnehN tkral YKZ3_YEAST : 229- 235: qnyad SydcsgN lvhsg YKZ3_YEAST : 256- 262: ygttg SvdawyN eitsy YKZ3_YEAST : 266- 271: yneit Sydys-N pgfse YKZ3_YEAST : 310- 316: dyiic SykaagN vigef G 7: 7.3401 95( 36) S-x(1,3)-N Occurences: 95(36) PR04_LYCES : 48- 52: gvgpm SwdaN lasra PR04_LYCES : 55- 59: danla SraqN yansr PR04_LYCES : 144- 146: gwwfi Sc--N ydpvg PR06_LYCES : 48- 52: gvgpm SwdaN lasra PR06_LYCES : 55- 59: danla SraqN yansr PR06_LYCES : 101- 103: vserp Sy--N yatnq PR06_LYCES : 144- 146: gwwfi Sc--N ydpvg PR12_HORVU : 22- 26: amvnl SqaqN spqdy PR12_HORVU : 33- 36: pqdyv Sph-N aarsa PR12_HORVU : 98- 101: adavn Swv-N ekkdy PR13_HORVU : 22- 26: amvnl SqaqN spqdy PR13_HORVU : 33- 36: pqdyv Sph-N aaraa PR13_HORVU : 93- 97: adwka SdavN swvse PR1A_TOBAC : 153- 155: ggyvv Sc--N ydppg PR1B_TOBAC : 28- 32: iishs ShaqN sqqdy PR1B_TOBAC : 153- 155: ggyvv Sc--N ydppg PR1C_TOBAC : 153- 155: ggyiv Sc--N ydppg PR1_ARATH : 94- 97: dlsgv Sav-N mwvse PR1_ARATH : 101- 105: vnmwv SekaN ynyaa PR1_ARATH : 146- 148: ggtii Sc--N ydprg PR1_HORVU : 22- 26: amvnl SqaqN spqdy PR1_HORVU : 33- 36: pqdyv Sph-N aarsa PR1_HORVU : 93- 97: adwka SdavN swvse PRB1_TOBAC : 21- 25: ilihs SkaqN spqdy PRB1_TOBAC : 136- 138: carvr Sn--N gwffi PRMS_MAIZE : 25- 29: tavhp SyseN spqdy PRMS_MAIZE : 27- 29: vhpsy Se--N spqdy SC14_SCHCO : 162- 164: vvwkh Sr--N lgcaa SC7_SCHCO : 101- 104: wehsn Sgq-N laawf SC7_SCHCO : 110- 114: laawf SpqaN kpmni SCP1_MOUSE : 22- 26: sllqd SsqeN rlekl SCP1_MOUSE : 23- 26: llqds Sqe-N rlekl SCP1_MOUSE : 44- 47: qeeiv Skh-N qlrrm SCP2_MOUSE : 23- 26: llqdn Sqe-N slekl SCP2_MOUSE : 44- 47: qeeiv Skh-N qlrrk SCP2_MOUSE : 58- 62: vspsg SdllN mewny SCP_RAT : 194- 198: gepcd ScpgN cedgl TPX1_HUMAN : 129- 131: gvgpk Sp--N avvgh TPX1_HUMAN : 216- 219: lsncd Slk-N tagce TPX1_MOUSE : 29- 33: dpdft SlltN qlqvq TPX1_MOUSE : 51- 53: nelrr Sv--N ptgsd TPX1_MOUSE : 114- 117: stviq Swy-N enedf TPX1_MOUSE : 191- 194: gtpca Scp-N nceng TPX1_MOUSE : 191- 195: gtpca ScpnN cengl VA3_SOLIN : 8- 12: ycnlq SckrN naiht VA3_SOLIN : 120- 124: iaats SsgkN kstpn VA3_SOLIN : 121- 124: aatss Sgk-N kstpn VA3_SOLIN : 126- 129: sgknk Stp-N emill VA3_SOLIN : 152- 155: issfp Sdd-N ilmkv VA3_SOLRI : 8- 12: yxnlq SxkxN naixt VA51_VESCR : 21- 25: ckygt StkpN cgknv VA51_VESCR : 73- 75: qppak Sm--N tlvwn VA51_VESCR : 108- 112: nsaky SvgqN iaegs VA51_VESCR : 125- 128: adnfg Svs-N mvkmw VA51_VESCR : 144- 147: dyqyg Spk-N klnkv VA52_DOLMA : 44- 48: ckfgt SmkpN cgrnv VA52_VESCR : 21- 25: ckygt StkpN cgknv VA52_VESCR : 73- 75: qppak Sm--N tlvwn VA52_VESCR : 108- 112: nsaky SvgqN iaegs VA52_VESCR : 119- 122: aegst Sad-N fvnvs VA52_VESCR : 144- 147: dyqyg Spk-N klnkv VA53_DOLMA : 31- 35: ckfgt SmkpN cgskl VA53_DOLMA : 127- 131: nvaia SttgN syatm VA5_DOLAR : 20- 24: ckygt SmkpN cggki VA5_DOLAR : 116- 120: nvaia SttgN syqtm VA5_POLAN : 29- 31: estkp Sk--N cagkv VA5_POLAN : 52- 55: kkliv Seh-N rfrqk VA5_POLAN : 78- 81: pqpaa Sdm-N dlvwn VA5_POLEX : 25- 27: estkp Sk--N cagkv VA5_POLEX : 48- 51: kkliv Seh-N rfrqk VA5_POLEX : 74- 77: pqpaa Sdm-N dlvwn VA5_POLFU : 25- 27: estkp Sk--N cadkv VA5_POLFU : 74- 77: pqpaa Sdm-N nlvwn VA5_POLFU : 74- 78: pqpaa SdmnN lvwnd VA5_VESFL : 21- 25: ackyg SlkpN cgnkv VA5_VESFL : 147- 149: pkkkf Sg--N nflkt VA5_VESFL : 147- 150: pkkkf Sgn-N flktg VA5_VESFL : 192- 194: cnygp Sg--N fqnee VA5_VESGE : 21- 25: ackye SlkpN cankk VA5_VESGE : 147- 149: pkkkf Se--N nflki VA5_VESGE : 147- 150: pkkkf Sen-N flkig VA5_VESGE : 192- 194: cnygp Sg--N fgnee VA5_VESMC : 21- 25: ackyg SlkpN cgnkk VA5_VESMC : 147- 149: pkkkf Se--N nflki VA5_VESMC : 147- 150: pkkkf Sen-N flkig VA5_VESMC : 192- 194: cnygp Sg--N fqnee VA5_VESPE : 21- 25: ackyg SlkpN cgnki VA5_VESPE : 147- 149: pkkkf Se--N nfnki VA5_VESPE : 147- 150: pkkkf Sen-N fnkig VA5_VESPE : 192- 194: cnygp Sg--N fgnee VA5_VESSQ : 22- 26: ckygt StkpN cgnmv VA5_VESSQ : 146- 150: fnpti SweqN efkki VA5_VESVI : 23- 27: ckygt StkpN cgkmv VA5_VESVI : 94- 97: aqvwa Sqc-N yghdt VA5_VESVI : 149- 151: pniew Sk--N nlkkt VA5_VESVI : 149- 152: pniew Skn-N lkktg VA5_VESVI : 194- 196: cnygp Sg--N frnek VA5_VESVU : 44- 48: ackyg SlkpN cgnkv VA5_VESVU : 170- 172: pkkkf Sg--N dflkt VA5_VESVU : 215- 217: cnygp Sg--N fmnee YKZ3_YEAST : 195- 198: sdfst Smv-N ehntk YKZ3_YEAST : 233- 235: dsydc Sg--N lvhsg Number of patterns evaluated by Pratt:12 Total running time: 1 seconds