------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file SBP_BACTERIAL_5 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SBP_BACTERIAL_5.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: AMIA_STRPN 659 APPA_BACSU 543 DPPA_ECOLI 535 DPPE_BACSU 543 EXP1_STRPN 163 HBPA_HAEIN 547 NIKA_ECOLI 524 OPPA_BACSU 545 OPPA_ECOLI 543 OPPA_LACLA 600 OPPA_LACLC 124 OPPA_SALTY 542 SAPA_HAEIN 565 SAPA_SALTY 549 XP55_STRLI 542 Y213_HAEIN 514 Pratt run started at Thu Feb 6 21:11:40 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 47( 16) A-x(1,2)-L-x(0,2)-A 2: 11.0102 21( 16) G-x(0,1)-S-x(3,5)-L 3: 11.0102 25( 16) L-x(0,2)-S-x(2,3)-V 4: 11.0102 27( 16) Y-x(0,2)-D-x(2,3)-K 5: 11.0102 26( 16) A-x(0,1)-K-x(2,4)-N 6: 10.5102 35( 16) A-x(0,2)-D-x(1,3)-S 7: 10.5102 26( 16) L-x(1,3)-G-x(1,3)-T 8: 10.5102 30( 16) T-x(0,2)-F-x(1,3)-L 9: 10.5102 42( 16) A-x(0,2)-A-x(2,4)-K 10: 10.5102 22( 16) P-x(2,4)-K-x(1,3)-A 11: 10.5102 31( 16) S-x(2,4)-T-x(2,4)-A 12: 10.5102 28( 16) S-x(2,4)-T-x(1,3)-A 13: 10.5102 36( 16) L-x(2,4)-D-x(1,3)-A 14: 10.5102 37( 16) T-x(2,4)-L-x(0,2)-D 15: 10.5102 41( 16) E-x(0,2)-K-x(0,2)-L 16: 10.5102 34( 16) Q-x(1,3)-L-x(0,2)-A 17: 10.5102 30( 16) L-x(0,2)-A-x(0,2)-E 18: 10.5102 24( 16) P-x(1,3)-A-x(0,2)-D 19: 8.3401 81( 16) L-A 20: 8.3401 58( 16) K-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 12.7647 25( 16) E-x(0,2)-K-x(0,2)-L-x(3)-[ADGN] B 2: 12.1290 28( 16) A-x(0,2)-A-x(2,4)-K-x(3)-[ADGSTV] C 3: 11.0102 47( 16) A-x(1,2)-L-x(0,2)-A D 4: 11.0102 21( 16) G-x(0,1)-S-x(3,5)-L E 5: 11.0102 25( 16) L-x(0,2)-S-x(2,3)-V F 6: 11.0102 27( 16) Y-x(0,2)-D-x(2,3)-K G 7: 11.0102 26( 16) A-x(0,1)-K-x(2,4)-N H 8: 10.5102 35( 16) A-x(0,2)-D-x(1,3)-S I 9: 10.5102 26( 16) L-x(1,3)-G-x(1,3)-T J 10: 10.5102 30( 16) T-x(0,2)-F-x(1,3)-L K 11: 10.5102 22( 16) P-x(2,4)-K-x(1,3)-A L 12: 10.5102 31( 16) S-x(2,4)-T-x(2,4)-A M 13: 10.5102 28( 16) S-x(2,4)-T-x(1,3)-A N 14: 10.5102 36( 16) L-x(2,4)-D-x(1,3)-A O 15: 10.5102 37( 16) T-x(2,4)-L-x(0,2)-D P 16: 10.5102 34( 16) Q-x(1,3)-L-x(0,2)-A Q 17: 10.5102 30( 16) L-x(0,2)-A-x(0,2)-E R 18: 10.5102 24( 16) P-x(1,3)-A-x(0,2)-D S 19: 8.3401 81( 16) L-A T 20: 8.3401 58( 16) K-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 12.7647 25( 16) E-x(0,2)-K-x(0,2)-L-x(3)-[ADGN] Occurences: 25(16) AMIA_STRPN : 524- 534: kttss EttKtyLgfdN pnsps AMIA_STRPN : 547- 555: qvglk EydK--LvdeA akets AMIA_STRPN : 637- 644: yekar E--Kw-LkekA esnek APPA_BACSU : 472- 480: wykna EadK--LmkdA ksisd DPPA_ECOLI : 201- 209: kagtp E--KldLnpiG tgpfq DPPA_ECOLI : 357- 366: ytydp EkaKa-LlkeA glekg DPPA_ECOLI : 357- 367: ytydp EkaKalLkeaG lekgf DPPE_BACSU : 43- 50: aktsg E--Kv-LyvnN enept EXP1_STRPN : 42- 48: gdmvk E--K--LvtyG dewkd HBPA_HAEIN : 368- 377: ypydp EkaKq-LlaeA gypng HBPA_HAEIN : 368- 378: ypydp EkaKqlLaeaG ypngf HBPA_HAEIN : 492- 500: ltnke EraK--LykqA qvivh NIKA_ECOLI : 191- 198: pwilq Es-K--LnqyD vfvrn OPPA_BACSU : 308- 316: ykfnt Ea-Kp-LdnvN irkal OPPA_BACSU : 374- 381: akeyl E--Kg-LkemG lskas OPPA_ECOLI : 37- 45: gvtla E--KqtLvrnN gsevq OPPA_ECOLI : 368- 377: qekrn EeaKk-LlaeA gytad OPPA_ECOLI : 368- 378: qekrn EeaKklLaeaG ytadk OPPA_ECOLI : 369- 377: ekrne EakK--LlaeA gytad OPPA_ECOLI : 369- 377: ekrne Ea-Kk-LlaeA gytad OPPA_ECOLI : 369- 378: ekrne EakKl-LaeaG ytadk OPPA_ECOLI : 369- 378: ekrne Ea-KklLaeaG ytadk OPPA_LACLA : 399- 407: svkgy E--KqdLdkaN kllde OPPA_LACLA : 522- 531: hfnds EitKd-LndiD sakse OPPA_LACLC : 46- 55: hfnds EitKd-LndiD sakse OPPA_SALTY : 367- 376: qqkrn EeaKk-LlaeA gftad OPPA_SALTY : 367- 377: qqkrn EeaKklLaeaG ftadk OPPA_SALTY : 368- 376: qkrne EakK--LlaeA gftad OPPA_SALTY : 368- 376: qkrne Ea-Kk-LlaeA gftad OPPA_SALTY : 368- 377: qkrne EakKl-LaeaG ftadk OPPA_SALTY : 368- 377: qkrne Ea-KklLaeaG ftadk SAPA_HAEIN : 418- 428: pfkia EmiKwdLaqaG vkvkv SAPA_SALTY : 368- 377: pqksr EqlKa-LgieN ltlhl XP55_STRLI : 216- 222: gwskg E--K--LgfrA nphyw Y213_HAEIN : 455- 463: mttis E--KvrLenyA klkgi B 2: 12.1290 28( 16) A-x(0,2)-A-x(2,4)-K-x(3)-[ADGSTV] Occurences: 28(16) AMIA_STRPN : 21- 31: aagvl A--AcsssKssdS sapka AMIA_STRPN : 351- 363: aldrs AysAqingKdgaA lavrn AMIA_STRPN : 416- 426: fnadk Ak-Aefr-KakkA leadg AMIA_STRPN : 604- 615: vpftg As-AqtgsKgsdV yfkyl APPA_BACSU : 363- 372: akqml Ae-Agw--KdtnG dgild APPA_BACSU : 471- 482: vwykn Ae-AdklmKdakS isdrk DPPA_ECOLI : 271- 281: pypnp AdiArm--KqdkS inlme DPPE_BACSU : 404- 414: ehkki Ae-Aiqq-KlknS lgvdv EXP1_STRPN : 69- 79: ynpek Ak-Aefa-KaksA lqaeg HBPA_HAEIN : 304- 316: kglnv AyiAfnteKapfD nvkvr HBPA_HAEIN : 409- 421: aelim AdwAkigvKtnpV tyewa NIKA_ECOLI : 337- 347: ydpqk Ak-Alle-KagwT lpagk OPPA_BACSU : 147- 158: yyikg AeaAntg-KgslD dvavk OPPA_BACSU : 147- 158: yyikg Ae-AantgKgslD dvavk OPPA_BACSU : 149- 158: ikgae A--Antg-KgslD dvavk OPPA_BACSU : 161- 172: slddv AvkAvnd-KtlkV elnnp OPPA_ECOLI : 401- 413: lhkkl AiaAsslwKkniG vnvkl OPPA_ECOLI : 403- 413: kklai A--AsslwKkniG vnvkl OPPA_LACLA : 109- 119: ikgga AdvAld--KeskT atitl OPPA_LACLA : 543- 551: ptyrk A--Afv--KyqeD mnkka OPPA_LACLC : 67- 75: ptyrk A--Afv--KyqeD mnkka OPPA_SALTY : 402- 412: kklai Av-Asiw-KknlG vnvnl OPPA_SALTY : 402- 413: kklai Av-AsiwkKnlgV nvnle SAPA_HAEIN : 425- 436: ikwdl Aq-AgvkvKvraV trpfl SAPA_SALTY : 404- 416: aeliq AdmAqvgvKvviV pvegr XP55_STRLI : 93- 104: lelkp AlaAalp-KvtdD grtit XP55_STRLI : 93- 104: lelkp Al-AaalpKvtdD grtit XP55_STRLI : 95- 104: lkpal Aa-Alp--KvtdD grtit XP55_STRLI : 95- 104: lkpal A--Aalp-KvtdD grtit XP55_STRLI : 96- 104: kpala A--Alp--KvtdD grtit XP55_STRLI : 399- 411: ayasd AkkAgievKvegA twevi Y213_HAEIN : 155- 165: mnlkn Ak-Avle-KalpV eslgl C 3: 11.0102 47( 16) A-x(1,2)-L-x(0,2)-A Occurences: 47(16) AMIA_STRPN : 17- 21: lvlla AgvL--A acsss AMIA_STRPN : 17- 22: lvlla AgvLa-A csssk AMIA_STRPN : 135- 139: dkkse AmyL--A ensvk AMIA_STRPN : 362- 365: ngkdg Aa-L--A vrnlf AMIA_STRPN : 388- 393: fgdlv AaqLp-A ygdew AMIA_STRPN : 389- 393: gdlva Aq-Lp-A ygdew APPA_BACSU : 18- 23: vlmvl AifLs-A csgsk APPA_BACSU : 253- 257: anaae Aq-Lq-A gdinf DPPA_ECOLI : 172- 176: ltrpe ApfL--A dlamd DPPA_ECOLI : 176- 179: eapfl Ad-L--A mdfas DPPA_ECOLI : 361- 366: pekak Al-LkeA glekg DPPA_ECOLI : 498- 504: vmhdq ApaLiiA hstvf DPPE_BACSU : 13- 19: wgmgl AlgLsfA lmgct EXP1_STRPN : 115- 119: kqsle At-Lg-A dnvii HBPA_HAEIN : 5- 10: mklk At-LtlA aatlv HBPA_HAEIN : 11- 17: tltla AatLvlA acdqs HBPA_HAEIN : 12- 17: ltlaa At-LvlA acdqs HBPA_HAEIN : 183- 187: lnktd AtfL--A slgmd HBPA_HAEIN : 266- 270: attry Ak-Lq-A gtcdl HBPA_HAEIN : 282- 285: lfpnv Ad-L--A kmktd HBPA_HAEIN : 370- 375: ydpek AkqLl-A eagyp HBPA_HAEIN : 404- 409: npkrm Ae-LimA dwaki HBPA_HAEIN : 479- 484: nsefd Al-LneA igltn NIKA_ECOLI : 11- 14: rrtlf Al-L--A casfi NIKA_ECOLI : 11- 16: rrtlf Al-LacA sfivh NIKA_ECOLI : 121- 126: nrqrh Aw-LelA nqivd NIKA_ECOLI : 312- 317: gtqqv AdtLf-A psvpy NIKA_ECOLI : 339- 344: pqkak Al-LekA gwtlp OPPA_BACSU : 265- 271: lkkfq AgeLdwA gmplg OPPA_BACSU : 494- 500: dktkr AelLkkA egifi OPPA_ECOLI : 12- 16: rslva AgvL--A almag OPPA_ECOLI : 12- 17: rslva AgvLa-A lmagn OPPA_ECOLI : 16- 20: aagvl Aa-Lm-A gnval OPPA_ECOLI : 370- 375: krnee AkkLl-A eagyt OPPA_LACLA : 16- 22: ssvvl AatLlsA cgsnq OPPA_LACLA : 17- 22: svvla AtlLs-A cgsnq OPPA_LACLA : 17- 22: svvla At-LlsA cgsnq OPPA_LACLA : 595- 598: igvss Ak-L--A tk OPPA_LACLC : 119- 122: igvss Ak-L--A tk OPPA_SALTY : 12- 17: kslia AgiLt-A liaat OPPA_SALTY : 317- 321: vrvrt AlkL--A ldrdi OPPA_SALTY : 369- 374: krnee AkkLl-A eagft OPPA_SALTY : 476- 482: fdkli AdtLkvA ddtqr SAPA_HAEIN : 216- 221: fsqey AyqLs-A ddnla SAPA_HAEIN : 319- 322: dgmnl Ay-L--A fnfdk SAPA_SALTY : 300- 303: pgmni Ay-L--A fntdk SAPA_SALTY : 342- 348: taeta AsiLprA swayd SAPA_SALTY : 399- 404: splkt Ae-LiqA dmaqv XP55_STRLI : 287- 293: sydfr AvtLpsA gqvtg XP55_STRLI : 424- 427: rmktd Av-L--A dlgsv Y213_HAEIN : 157- 162: lknak Av-LekA lpves D 4: 11.0102 21( 16) G-x(0,1)-S-x(3,5)-L Occurences: 21(16) AMIA_STRPN : 257- 263: layyd G-Sdqes-L ernft AMIA_STRPN : 301- 307: yytqs G-Sgiag-L gvnid APPA_BACSU : 50- 57: gdlvv G-SigeptL fnsly APPA_BACSU : 143- 149: ykger G-Styem-L ksvek DPPA_ECOLI : 331- 337: vyqga GvSakn--L ipptm DPPE_BACSU : 138- 144: ldpkk GaSsaf--L gyfie EXP1_STRPN : 14- 22: lngqt GaSkilrnL fvppt HBPA_HAEIN : 99- 106: eisdd GlSytfh-L rkgvk HBPA_HAEIN : 342- 349: vyqga GtSaknp-L pptiw NIKA_ECOLI : 66- 72: kyqad G-Svipw-L akswt OPPA_BACSU : 381- 388: glkem GlSkasd-L pkikl OPPA_ECOLI : 46- 52: lvrnn G-Sevqs-L dphki OPPA_LACLA : 374- 382: nkfsn GlStpansL ippif OPPA_LACLA : 591- 597: twsei GvSsak--L atk OPPA_LACLC : 115- 121: twsei GvSsak--L atk OPPA_SALTY : 45- 51: lvrnn G-Sevqs-L dphki SAPA_HAEIN : 551- 558: kmtpf G-SldfstL yfiqe SAPA_SALTY : 254- 261: vvvdl G-SggtgrL skllt XP55_STRLI : 73- 81: gygkd GnSkifdgL lardt XP55_STRLI : 211- 218: pyvlt GwSkgek-L gfran Y213_HAEIN : 390- 396: rvenq GmSwqe--L qtart E 5: 11.0102 25( 16) L-x(0,2)-S-x(2,3)-V Occurences: 25(16) AMIA_STRPN : 595- 599: gaapv L--Sri-V pftga APPA_BACSU : 11- 16: talmm L--SvlmV laifl DPPA_ECOLI : 295- 299: lnvgy L--Syn-V qkkpl DPPE_BACSU : 411- 417: aiqqk LknSlg-V dvkla EXP1_STRPN : 151- 155: gedwd L--Sdn-V gwgpd HBPA_HAEIN : 162- 169: mkfpe LlkSvekV ddnti HBPA_HAEIN : 163- 169: kfpel Lk-SvekV ddnti HBPA_HAEIN : 214- 219: gkpet Ld-Srp-V gtgpf HBPA_HAEIN : 522- 526: vgfap L--Spr-V kgyvq NIKA_ECOLI : 430- 435: dphaf Ls-Smr-V pshad NIKA_ECOLI : 430- 435: dphaf L--SsmrV pshad OPPA_BACSU : 422- 429: gvdve LdnSewnV yidkl OPPA_ECOLI : 174- 178: tlevt L--Sep-V pyfyk OPPA_LACLA : 8- 14: klkvt LlaSsv-V laatl OPPA_LACLA : 9- 14: lkvtl La-Ssv-V laatl OPPA_LACLC : 89- 94: ptnfs L--SytpV nkrvv OPPA_SALTY : 173- 177: tfevt L--Sep-V pyfyk OPPA_SALTY : 249- 255: nqvty LpiSse-V tdvnr SAPA_HAEIN : 183- 188: ksvta L--SpyqV kielf SAPA_SALTY : 3- 10: mr LvlSsliV iagll SAPA_SALTY : 5- 10: mrlv Ls-Sli-V iagll SAPA_SALTY : 5- 10: mrlv L--SsliV iagll SAPA_SALTY : 85- 91: rlvpe LaeSwe-V ldnga XP55_STRLI : 290- 296: fravt Lp-SagqV tgdra Y213_HAEIN : 45- 50: qkntq Le-Snr-V elkrg Y213_HAEIN : 255- 260: svdad L--SdfdV vmnpk Y213_HAEIN : 286- 290: fyefn L--Sdp-V lqksa F 6: 11.0102 27( 16) Y-x(0,2)-D-x(2,3)-K Occurences: 27(16) AMIA_STRPN : 394- 399: aqlpa Yg-Dew-K gvnla AMIA_STRPN : 514- 519: qdpst Yl-Dil-K ttsse APPA_BACSU : 105- 110: dggla Y--DvkiK kgvkf DPPA_ECOLI : 190- 196: ilske Ya-DammK agtpe DPPA_ECOLI : 352- 358: ddvqd YtyDpe-K akall DPPA_ECOLI : 354- 358: vqdyt Y--Dpe-K akall DPPA_ECOLI : 519- 526: kevkg YvvDplgK hhfen DPPE_BACSU : 475- 480: wanke Y--DqliK qakne EXP1_STRPN : 47- 52: eklvt Yg-Dew-K dvnla HBPA_HAEIN : 201- 207: iysae Ya-DsmlK agkpe HBPA_HAEIN : 363- 369: deiqd YpyDpe-K akqll HBPA_HAEIN : 365- 369: iqdyp Y--Dpe-K akqll NIKA_ECOLI : 332- 336: lkpsq Y--Dpq-K akall OPPA_BACSU : 237- 242: ekndq Yw-Dkd-K vklkk OPPA_BACSU : 360- 367: dnkeg YfkDndvK takey OPPA_ECOLI : 347- 352: gytpp Yt-Dga-K ltqpe OPPA_LACLA : 61- 68: nlkva YqsDspmK aqwls OPPA_LACLA : 221- 228: vapyq YlkDvapK dlass OPPA_LACLA : 548- 554: aafvk YqeDmn-K kayvi OPPA_LACLA : 548- 555: aafvk YqeDmnkK ayvip OPPA_LACLC : 72- 78: aafvk YqeDmn-K kayvv OPPA_LACLC : 72- 79: aafvk YqeDmnkK ayvvp OPPA_SALTY : 235- 240: ernpq Yw-Dna-K tvinq OPPA_SALTY : 346- 351: sytpp Yt-Dga-K lvepe SAPA_HAEIN : 167- 172: kvrfp Yf-Dsi-K lneki SAPA_SALTY : 352- 357: raswa Y--DndaK iteyn XP55_STRLI : 69- 76: spllg YgkDgnsK ifdgl XP55_STRLI : 395- 401: dhala YasDak-K agiev Y213_HAEIN : 503- 510: svgvi YskDlwrK vqsq G 7: 11.0102 26( 16) A-x(0,1)-K-x(2,4)-N Occurences: 26(16) AMIA_STRPN : 118- 123: yaevt A-Kdfv-N glkha AMIA_STRPN : 329- 336: dsekv AtKkallN kdfrq APPA_BACSU : 273- 278: tdykt AeKfn--N lkivt DPPA_ECOLI : 255- 260: asvry A-Klqk-N ecqvm DPPE_BACSU : 112- 116: tiren A-Kwt--N gdpvt EXP1_STRPN : 15- 21: ngqtg AsKilr-N lfvpp HBPA_HAEIN : 34- 39: taqte A-Ksss-N ntfvy HBPA_HAEIN : 34- 40: taqte A-KsssnN tfvyc NIKA_ECOLI : 212- 219: wgekp AiKkitfN vipdp NIKA_ECOLI : 278- 283: lalnt A-Kapt-N elavr OPPA_BACSU : 161- 166: slddv AvKav--N dktlk OPPA_BACSU : 198- 205: ineki AeKnkkwN tnagd OPPA_BACSU : 309- 314: kfnte A-Kpld-N vnirk OPPA_ECOLI : 240- 245: tywnn A-Ktvi-N qvtyl OPPA_ECOLI : 381- 388: eagyt AdKpltiN llynt OPPA_LACLA : 51- 56: qnpdk AiKgg--N lkvay OPPA_LACLA : 336- 341: lghyd A-Knsi-N vqdrk OPPA_LACLA : 533- 537: ndids A-Kse--N ptyrk OPPA_LACLC : 57- 61: ndids A-Kse--N ptyrk OPPA_SALTY : 86- 91: pspgv AeKwe--N kdfkv OPPA_SALTY : 215- 220: ivtng AyKlk--N wvvne OPPA_SALTY : 239- 244: qywdn A-Ktvi-N qvtyl SAPA_HAEIN : 392- 399: aknkl AdKnlllN lwvin SAPA_HAEIN : 510- 514: hlssr A-Kay--N eaqel SAPA_SALTY : 356- 362: aydnd A-KiteyN pqksr XP55_STRLI : 187- 193: vpehv AgKqdp-N tgdfn Y213_HAEIN : 116- 120: tlren A-Kws--N gepit H 8: 10.5102 35( 16) A-x(0,2)-D-x(1,3)-S Occurences: 35(16) AMIA_STRPN : 83- 89: lapav Ae-DwevS kdglt AMIA_STRPN : 128- 133: nglkh Aa-Dkk-S eamyl AMIA_STRPN : 129- 133: glkha A--Dkk-S eamyl AMIA_STRPN : 147- 151: svkgl A--Dyl-S gtstd AMIA_STRPN : 253- 258: dtinl AyyDg--S dqesl AMIA_STRPN : 346- 350: qalnf Al-Dr--S aysaq APPA_BACSU : 313- 318: qaltt Al-Dre-S ivsqv DPPA_ECOLI : 115- 121: treln Ad-DvvfS fdrqk DPPA_ECOLI : 179- 184: fladl Am-Dfa-S ilske DPPE_BACSU : 450- 454: flpdy A--Dpi-S fleaf EXP1_STRPN : 145- 152: faena AgeDwdlS dnvgw HBPA_HAEIN : 17- 22: atlvl AacDq--S ssank HBPA_HAEIN : 17- 23: atlvl AacDqs-S sanks HBPA_HAEIN : 17- 24: atlvl AacDqssS ankst HBPA_HAEIN : 18- 22: tlvla Ac-Dq--S ssank HBPA_HAEIN : 18- 23: tlvla Ac-Dqs-S sanks HBPA_HAEIN : 18- 24: tlvla Ac-DqssS ankst HBPA_HAEIN : 126- 132: trdfn Ad-DvvfS fqrql NIKA_ECOLI : 64- 67: lvkyq A--Dg--S vipwl NIKA_ECOLI : 391- 394: mrqig A--Dv--S ligee OPPA_BACSU : 58- 63: lhpgl An-Dsv-S ggvir OPPA_BACSU : 208- 214: kwntn AgdDyv-S ngpfk OPPA_BACSU : 208- 214: kwntn Ag-DdyvS ngpfk OPPA_ECOLI : 116- 122: gtpvt Aq-DfvyS wqrsv OPPA_LACLA : 112- 117: gaadv Al-Dke-S ktati OPPA_LACLA : 226- 232: ylkdv ApkDla-S spktt OPPA_LACLA : 226- 233: ylkdv ApkDlasS pkttt OPPA_LACLA : 365- 372: yarnv AevDnkfS nglst OPPA_LACLC : 107- 112: tldyg Am-Dtw-S eigvs OPPA_SALTY : 115- 121: gtpvt Ah-DfvyS wqrla OPPA_SALTY : 482- 488: dtlkv Ad-DtqrS elyak SAPA_HAEIN : 52- 57: fnpqt A--DagtS mnvvt SAPA_HAEIN : 120- 126: trdfn Ae-DvvfS inrvl SAPA_HAEIN : 194- 198: kielf Ap-Ds--S ilshl SAPA_SALTY : 29- 36: apeqt AsaDirdS gfvyc SAPA_SALTY : 31- 36: eqtas A--DirdS gfvyc SAPA_SALTY : 156- 161: dslqf A--DnvkS vrnvd XP55_STRLI : 427- 431: tdavl A--Dlg-S vgdpd Y213_HAEIN : 23- 29: iftvv Ac-DkldS pkpis Y213_HAEIN : 126- 132: gepit As-DfvqS wqtls Y213_HAEIN : 253- 256: kisvd A--Dl--S dfdvv I 9: 10.5102 26( 16) L-x(1,3)-G-x(1,3)-T Occurences: 26(16) AMIA_STRPN : 150- 155: glady Ls--Gts-T dfstv AMIA_STRPN : 221- 226: yngpf Llk-Gl--T akssv AMIA_STRPN : 222- 226: ngpfl Lk--Gl--T akssv APPA_BACSU : 362- 370: kakqm LaeaGwkdT ngdgi DPPA_ECOLI : 46- 52: gfnpq LftsGt--T ydass DPPE_BACSU : 20- 24: glsfa Lm--Gc--T aneqa EXP1_STRPN : 9- 13: ayasq Ln--Gq--T gaski EXP1_STRPN : 80- 86: kaksa LqaeGv--T fpihl HBPA_HAEIN : 206- 213: yadsm Lka-GkpeT ldsrp NIKA_ECOLI : 341- 347: kakal LekaGw--T lpagk OPPA_BACSU : 18- 26: iftlv LsacGfggT gsnge OPPA_ECOLI : 374- 380: eakkl LaeaGy--T adkpl OPPA_LACLA : 579- 586: vvgmt Ldy-GamnT wseig OPPA_LACLC : 103- 110: vvgmt Ldy-GamdT wseig OPPA_SALTY : 9- 16: itkks LiaaGil-T aliaa OPPA_SALTY : 373- 379: eakkl LaeaGf--T adkpl SAPA_HAEIN : 31- 37: svptf LtenGl--T yctha SAPA_HAEIN : 131- 136: sinrv Lg--Ghn-T ylptl SAPA_SALTY : 92- 97: eswev Ldn-Ga--T yrfhl SAPA_SALTY : 253- 258: qvvvd Lgs-Gg--T grlsk SAPA_SALTY : 434- 441: dmnhd LtlsGwa-T dsndp SAPA_SALTY : 436- 441: nhdlt Ls--Gwa-T dsndp XP55_STRLI : 124- 131: sdgep Lta-GdvyT yrtvl XP55_STRLI : 290- 297: fravt LpsaGqv-T gdrai XP55_STRLI : 519- 523: glttq Le--Gr--T ntasp XP55_STRLI : 519- 525: glttq Le--GrtnT aspag Y213_HAEIN : 79- 84: qllrd Lfe-Gl--T aydvq J 10: 10.5102 30( 16) T-x(0,2)-F-x(1,3)-L Occurences: 30(16) AMIA_STRPN : 382- 386: sagek T--Fgd-L vaaql APPA_BACSU : 56- 61: sigep Tl-Fns-L ystdd DPPA_ECOLI : 90- 95: sedgk TytFh--L rkgvk DPPA_ECOLI : 92- 95: dgkty T--Fh--L rkgvk DPPA_ECOLI : 162- 167: kvddn TvqFv--L trpea DPPA_ECOLI : 210- 215: lnpig TgpFq--L qqyqk DPPE_BACSU : 490- 494: eadek Tr-Fs--L mhqae EXP1_STRPN : 86- 91: qaegv T--FpihL dmpvd HBPA_HAEIN : 103- 106: dglsy T--Fh--L rkgvk HBPA_HAEIN : 184- 189: nktda T--FlasL gmdfi NIKA_ECOLI : 8- 12: stlrr Tl-Fa--L lacas NIKA_ECOLI : 8- 13: stlrr Tl-Fal-L acasf NIKA_ECOLI : 84- 89: sedgk TwtFt--L rddvk NIKA_ECOLI : 86- 89: dgktw T--Ft--L rddvk OPPA_BACSU : 48- 53: ninik TepFs--L hpgla OPPA_BACSU : 70- 74: gvirq T--Feg-L trina OPPA_BACSU : 178- 184: elnnp TpyFte-L tafyt OPPA_ECOLI : 99- 102: dakvw T--Fh--L rkdak OPPA_LACLA : 561- 565: ayvip Tn-Fm--L nytpv OPPA_LACLC : 85- 89: ayvvp Tn-Fs--L sytpv OPPA_SALTY : 98- 101: dfkvw T--Fh--L renak OPPA_SALTY : 168- 173: alddh T--FevtL sepvp OPPA_SALTY : 385- 388: adkpl T--Fd--L lynts OPPA_SALTY : 385- 389: adkpl T--Fdl-L yntsd SAPA_HAEIN : 548- 553: kgvkm Tp-Fgs-L dfstl SAPA_SALTY : 97- 102: ldnga TyrFh--L rrdvs SAPA_SALTY : 169- 174: nvdnn TveFr--L tqpda SAPA_SALTY : 217- 222: rqpvg TgpFq--L seyra XP55_STRLI : 107- 112: tddgr TitFt--L regvn XP55_STRLI : 109- 112: dgrti T--Ft--L regvn XP55_STRLI : 161- 166: aradg TvvFt--L kypya Y213_HAEIN : 107- 112: tednk TwiFt--L renak K 11: 10.5102 22( 16) P-x(2,4)-K-x(1,3)-A Occurences: 22(16) AMIA_STRPN : 219- 227: llyng Pfll-KgltA kssve APPA_BACSU : 266- 273: nffnv PatdyKt--A ekfnn DPPA_ECOLI : 303- 312: nvqkk PlddvKvrqA ltyav DPPE_BACSU : 398- 404: tystk Pehk-Ki--A eaiqq DPPE_BACSU : 398- 404: tystk Peh--Kki-A eaiqq DPPE_BACSU : 398- 406: tystk Pehk-KiaeA iqqkl EXP1_STRPN : 66- 74: dglyn Peka-KaefA kaksa HBPA_HAEIN : 314- 323: nteka PfdnvKvrqA lnyav HBPA_HAEIN : 367- 375: dypyd Peka-KqllA eagyp HBPA_HAEIN : 398- 404: irasn Pnp--Krm-A elima NIKA_ECOLI : 58- 64: smvye Plv--Kyq-A dgsvi OPPA_BACSU : 192- 198: fytym Pine-Ki--A eknkk OPPA_ECOLI : 192- 197: hpsts Pvp--Ka--A iekfg OPPA_LACLA : 218- 226: letva PyqylKdv-A pkdla OPPA_LACLA : 538- 544: aksen Ptyr-Ka--A fvkyq OPPA_LACLC : 62- 68: aksen Ptyr-Ka--A fvkyq OPPA_SALTY : 191- 196: hpsvs Pvp--Ks--A vekfg OPPA_SALTY : 469- 476: ahyks Pafd-Kli-A dtlkv SAPA_HAEIN : 384- 392: efdyn Pkia-KnklA dknll SAPA_HAEIN : 411- 417: eqvyn Papf-Ki--A emikw SAPA_SALTY : 116- 122: tawft Ptr--Kln-A ddvvf SAPA_SALTY : 393- 399: sqawn Pspl-Kt--A eliqa XP55_STRLI : 418- 424: wevie Prm--Ktd-A vladl Y213_HAEIN : 289- 295: fnlsd Pvlq-Ks--A vrkai L 12: 10.5102 31( 16) S-x(2,4)-T-x(2,4)-A Occurences: 31(16) AMIA_STRPN : 154- 164: ylsgt StdfsTvgvkA vddyt AMIA_STRPN : 325- 333: skttd SekvaTkk--A llnkd APPA_BACSU : 60- 67: ptlfn Slys-Tdd--A stdie DPPA_ECOLI : 16- 24: lklgl SlvamTva--A svqak DPPA_ECOLI : 49- 55: pqlft Sgt--Tyd--A ssvpl DPPE_BACSU : 268- 278: yqmkq SgeldTayvpA elsdq DPPE_BACSU : 464- 471: fqtgn Smnr-Tgw--A nkeyd EXP1_STRPN : 112- 119: qsmkq Slea-Tlg--A dnvii HBPA_HAEIN : 24- 34: cdqss SanksTaqteA ksssn NIKA_ECOLI : 3- 11: ml StlrrTlf--A llaca NIKA_ECOLI : 265- 274: yhtql SqpieTvml-A lntak OPPA_BACSU : 394- 400: pkikl Syn--Tdd--A hakia OPPA_BACSU : 394- 402: pkikl Syn--TddahA kiaqa OPPA_ECOLI : 109- 116: kdakw Sdg--Tpvt-A qdfvy OPPA_ECOLI : 126- 136: yswqr SvdpnTaspyA sylqy OPPA_LACLA : 28- 38: cgsnq SsstsTkklkA gnfdv OPPA_LACLA : 29- 38: gsnqs Ssts-TkklkA gnfdv OPPA_LACLA : 30- 38: snqss Sts--TkklkA gnfdv OPPA_LACLA : 155- 163: npayg Sdrw-Tdsl-A nivgl OPPA_LACLA : 169- 176: nivgl Sdyh-Tgk--A ktisg OPPA_LACLA : 535- 543: idsak Senp-Tyrk-A afvky OPPA_LACLA : 535- 544: idsak Senp-TyrkaA fvkyq OPPA_LACLC : 59- 67: idsak Senp-Tyrk-A afvky OPPA_LACLC : 59- 68: idsak Senp-TyrkaA fvkyq OPPA_SALTY : 108- 115: enakw Sdg--Tpvt-A hdfvy SAPA_HAEIN : 46- 54: hasgf SfnpqTad--A gtsmn SAPA_HAEIN : 76- 84: diknh Satl-Tpml-A qsysi SAPA_HAEIN : 351- 360: ariih SiyhnTatv-A nniip SAPA_SALTY : 16- 24: iagll Ssqa-Taat-A peqta SAPA_SALTY : 17- 24: aglls Sqa--Taat-A peqta SAPA_SALTY : 332- 341: qrlmq SiyygTaet-A asilp SAPA_SALTY : 332- 342: qrlmq SiyygTaetaA silpr XP55_STRLI : 292- 301: avtlp SagqvTgdr-A irral Y213_HAEIN : 16- 23: savif Siif-Tvv--A cdkld Y213_HAEIN : 302- 311: rkaiv Smis-TnnlvA diahl M 13: 10.5102 28( 16) S-x(2,4)-T-x(1,3)-A Occurences: 28(16) AMIA_STRPN : 325- 333: skttd SekvaTkk-A llnkd APPA_BACSU : 60- 67: ptlfn Slys-Tdd-A stdie DPPA_ECOLI : 16- 23: lklgl SlvamTv--A asvqa DPPA_ECOLI : 16- 24: lklgl SlvamTva-A svqak DPPA_ECOLI : 49- 55: pqlft Sgt--Tyd-A ssvpl DPPE_BACSU : 464- 471: fqtgn Smnr-Tgw-A nkeyd EXP1_STRPN : 112- 119: qsmkq Slea-Tlg-A dnvii HBPA_HAEIN : 28- 34: ssank Staq-Te--A ksssn NIKA_ECOLI : 3- 11: ml StlrrTlf-A llaca NIKA_ECOLI : 265- 274: yhtql SqpieTvmlA lntak NIKA_ECOLI : 367- 373: lriel Sfig-Td--A lsksm OPPA_BACSU : 394- 400: pkikl Syn--Tdd-A hakia OPPA_ECOLI : 109- 116: kdakw Sdg--TpvtA qdfvy OPPA_LACLA : 76- 82: wlsgl Snda-Tf--A tmsgp OPPA_LACLA : 155- 163: npayg Sdrw-TdslA nivgl OPPA_LACLA : 169- 176: nivgl Sdyh-Tgk-A ktisg OPPA_LACLA : 372- 379: vdnkf SnglsTp--A nslip OPPA_LACLA : 535- 543: idsak Senp-TyrkA afvky OPPA_LACLC : 59- 67: idsak Senp-TyrkA afvky OPPA_SALTY : 108- 115: enakw Sdg--TpvtA hdfvy SAPA_HAEIN : 46- 54: hasgf SfnpqTad-A gtsmn SAPA_HAEIN : 76- 84: diknh Satl-TpmlA qsysi SAPA_HAEIN : 351- 360: ariih SiyhnTatvA nniip SAPA_SALTY : 16- 22: iagll Ssqa-Ta--A tapeq SAPA_SALTY : 16- 24: iagll Ssqa-TaatA peqta SAPA_SALTY : 17- 22: aglls Sqa--Ta--A tapeq SAPA_SALTY : 17- 24: aglls Sqa--TaatA peqta SAPA_SALTY : 332- 341: qrlmq SiyygTaetA asilp XP55_STRLI : 292- 301: avtlp SagqvTgdrA irral Y213_HAEIN : 16- 23: savif Siif-Tvv-A cdkld Y213_HAEIN : 365- 371: ryddl Slnq-Ti--A mrlnh N 14: 10.5102 36( 16) L-x(2,4)-D-x(1,3)-A Occurences: 36(16) AMIA_STRPN : 334- 342: atkka Llnk-DfrqA lnfal AMIA_STRPN : 335- 342: tkkal Lnk--DfrqA lnfal AMIA_STRPN : 343- 351: dfrqa LnfalDrs-A ysaqi AMIA_STRPN : 369- 378: lavrn LfvkpDfvsA gektf AMIA_STRPN : 410- 416: dgqdg Lfna-Dk--A kaefr AMIA_STRPN : 410- 418: dgqdg Lfna-DkakA efrka AMIA_STRPN : 438- 445: qfpih LdvpvDq--A sknyi AMIA_STRPN : 620- 626: vyfky Lklq-Dk--A vtkee APPA_BACSU : 61- 67: tlfns Lyst-Dd--A stdie APPA_BACSU : 279- 286: ekfnn LkivtDl--A lsyvy APPA_BACSU : 324- 331: ivsqv Ldg--DgevA yipes DPPA_ECOLI : 178- 183: pflad Lam--Df--A silsk DPPE_BACSU : 415- 422: klkns Lgv--DvklA nmewn EXP1_STRPN : 91- 99: tfpih LdmpvDqt-A ttkvq HBPA_HAEIN : 324- 332: kvrqa LnyavDkk-A iieav HBPA_HAEIN : 406- 412: krmae Lima-Dw--A kigvk NIKA_ECOLI : 245- 252: ygneg Llpl-Dtf-A rfsqn NIKA_ECOLI : 246- 252: gnegl Lpl--Dtf-A rfsqn NIKA_ECOLI : 477- 484: lyrdi LtrlhDe--A vylpi OPPA_BACSU : 393- 400: lpkik LsyntDd--A hakia OPPA_BACSU : 393- 402: lpkik LsyntDdahA kiaqa OPPA_ECOLI : 25- 31: agnva Laa--Dvp-A gvtla OPPA_ECOLI : 74- 83: lfegl LvsdlDghpA pgvae OPPA_ECOLI : 480- 486: imaet Lkvt-De--A qrtal OPPA_ECOLI : 499- 504: kaeqq Ldk--Ds--A ivpvy OPPA_LACLA : 75- 82: qwlsg Lsn--DatfA tmsgp OPPA_LACLA : 527- 533: eitkd Lndi-Ds--A ksenp OPPA_LACLC : 51- 57: eitkd Lndi-Ds--A ksenp OPPA_SALTY : 498- 503: kaeqq Ldk--Ds--A ivpvy SAPA_HAEIN : 219- 226: eyayq Lsad-Dnl-A qldth SAPA_HAEIN : 219- 226: eyayq Lsa--DdnlA qldth SAPA_SALTY : 58- 64: kassg Liv--Dtl-A aqlyd SAPA_SALTY : 58- 65: kassg Liv--DtlaA qlydr SAPA_SALTY : 265- 273: rlskl LtgecDvl-A wpaas SAPA_SALTY : 401- 407: lktae Liqa-Dm--A qvgvk XP55_STRLI : 251- 259: vratr Lrsg-DldgA vlppn XP55_STRLI : 306- 314: airra LdaavDrq-A mvdki XP55_STRLI : 393- 402: rqdha LayasDakkA gievk Y213_HAEIN : 178- 185: endrt LrielDk--A spylp Y213_HAEIN : 309- 314: istnn Lva--Di--A hlypn O 15: 10.5102 37( 16) T-x(2,4)-L-x(0,2)-D Occurences: 37(16) AMIA_STRPN : 330- 338: sekva TkkalLnkD frqal AMIA_STRPN : 525- 533: ttsse TtktyLgfD npnsp AMIA_STRPN : 526- 533: tsset Tkty-LgfD npnsp APPA_BACSU : 129- 137: ddvvf TysvpLskD ykger APPA_BACSU : 311- 315: vrqal Tta--L--D resiv DPPA_ECOLI : 110- 116: kefkp Tre--LnaD dvvfs DPPA_ECOLI : 199- 204: mmkag Tpek-L--D lnpig DPPE_BACSU : 245- 249: ywdkd Tvk--L--D kvkwa EXP1_STRPN : 86- 92: qaegv TfpihL--D mpvdq HBPA_HAEIN : 184- 192: nktda TflasLgmD fisiy NIKA_ECOLI : 84- 91: sedgk TwtftLr-D dvkfs NIKA_ECOLI : 84- 92: sedgk TwtftLrdD vkfsn NIKA_ECOLI : 86- 91: dgktw Tft--Lr-D dvkfs NIKA_ECOLI : 86- 92: dgktw Tft--LrdD vkfsn NIKA_ECOLI : 467- 475: athde TqrqaLyrD iltrl OPPA_BACSU : 152- 158: aeaan TgkgsL--D dvavk OPPA_BACSU : 152- 159: aeaan TgkgsLd-D vavka OPPA_BACSU : 307- 313: wykfn TeakpL--D nvnir OPPA_BACSU : 322- 326: irkal Tys--L--D rqsiv OPPA_ECOLI : 99- 105: dakvw Tfh--LrkD akwsd OPPA_ECOLI : 317- 324: dvrvr Talk-LgmD rdiiv OPPA_ECOLI : 525- 531: wvggy TgkdpL--D ntytr OPPA_LACLA : 119- 127: dkesk TatitLrkD lkwsd OPPA_LACLA : 121- 127: eskta Tit--LrkD lkwsd OPPA_LACLA : 524- 529: ndsei Tkd--Ln-D idsak OPPA_LACLC : 48- 53: ndsei Tkd--Ln-D idsak OPPA_SALTY : 316- 323: dvrvr Talk-LalD rdiiv OPPA_SALTY : 379- 387: aeagf TadkpLtfD llynt OPPA_SALTY : 524- 530: wvggy TgkdpL--D niyvk SAPA_HAEIN : 548- 554: kgvkm TpfgsL--D fstly SAPA_SALTY : 62- 69: glivd TlaaqLy-D rlldv SAPA_SALTY : 97- 105: ldnga TyrfhLrrD vsfqk SAPA_SALTY : 115- 123: ktawf TptrkLnaD dvvft SAPA_SALTY : 117- 123: awftp Trk--LnaD dvvft XP55_STRLI : 131- 137: agdvy TyrtvL--D ektnn XP55_STRLI : 143- 149: ektnn TarseL--D avrer XP55_STRLI : 422- 428: eprmk Tdav-La-D lgsvg Y213_HAEIN : 73- 78: qseeq Tql--Lr-D lfegl Y213_HAEIN : 177- 183: aendr TlrieL--D kaspy Y213_HAEIN : 306- 312: vsmis Tnn--LvaD iahly P 16: 10.5102 34( 16) Q-x(1,3)-L-x(0,2)-A Occurences: 34(16) AMIA_STRPN : 341- 346: nkdfr Qa--LnfA ldrsa AMIA_STRPN : 407- 413: nladg Qdg-LfnA dkaka AMIA_STRPN : 651- 655: sneka Qke-L--A shvk APPA_BACSU : 220- 226: ewkqg QyikLe-A nddyf APPA_BACSU : 308- 313: dkkvr Qa--LttA ldres APPA_BACSU : 360- 363: ekkak Qm--L--A eagwk APPA_BACSU : 360- 365: ekkak Qm--LaeA gwkdt DPPA_ECOLI : 311- 316: dvkvr Qa--LtyA vnkda DPPA_ECOLI : 497- 504: vvmhd QapaLiiA hstvf DPPE_BACSU : 267- 274: dyqmk QsgeLdtA yvpae EXP1_STRPN : 111- 115: vqsmk Qs--Le-A tlgad HBPA_HAEIN : 298- 304: vqlle Qkg-LnvA yiafn HBPA_HAEIN : 322- 327: nvkvr Qa--LnyA vdkka HBPA_HAEIN : 372- 375: pekak Ql--L--A eagyp HBPA_HAEIN : 372- 377: pekak Ql--LaeA gypng NIKA_ECOLI : 141- 147: sktel Qit-LksA yypfl NIKA_ECOLI : 153- 156: yypfl Qe--L--A lprpf NIKA_ECOLI : 444- 448: adfqa Qqg-L--A dkpli NIKA_ECOLI : 445- 448: dfqaq Qg--L--A dkpli OPPA_BACSU : 264- 271: elkkf QageLdwA gmplg OPPA_ECOLI : 246- 253: ktvin QvtyLpiA sevtd OPPA_LACLA : 401- 406: kgyek Qd--LdkA nklld OPPA_LACLA : 503- 509: aseps Qqd-LfsA aapyn OPPA_LACLA : 504- 509: sepsq Qd--LfsA aapyn OPPA_LACLC : 27- 33: aseps Qqd-LfsA sapyn OPPA_LACLC : 28- 33: sepsq Qd--LfsA sapyn OPPA_SALTY : 123- 126: fvysw Qr--L--A dpnta OPPA_SALTY : 334- 339: nkvkn Qgd-Lp-A ysytp OPPA_SALTY : 486- 492: vaddt QrseLy-A kaeqq SAPA_HAEIN : 17- 23: llcii QsveLq-A apsvp SAPA_HAEIN : 17- 24: llcii QsveLqaA psvpt SAPA_HAEIN : 341- 346: raais Qs--LnrA riihs SAPA_SALTY : 484- 487: kalss Qq--L--A sriea XP55_STRLI : 389- 394: gdkvr QdhaL--A yasda XP55_STRLI : 389- 396: gdkvr QdhaLayA sdakk XP55_STRLI : 487- 492: ayrei Qka-Lv-A dpgyt Y213_HAEIN : 89- 95: taydv Qgn-LvpA vaenw Y213_HAEIN : 394- 399: qgmsw Qe--LqtA rtkgd Q 17: 10.5102 30( 16) L-x(0,2)-A-x(0,2)-E Occurences: 30(16) AMIA_STRPN : 78- 84: dnygn LapAvaE dwevs AMIA_STRPN : 138- 140: seamy L--A--E nsvkg APPA_BACSU : 90- 94: klnvk LslA--E sikel APPA_BACSU : 92- 94: nvkls L--A--E sikel APPA_BACSU : 362- 364: kakqm L--A--E agwkd DPPA_ECOLI : 78- 80: evipg L--A--E kwevs DPPA_ECOLI : 363- 369: kakal LkeAglE kgfsi DPPE_BACSU : 421- 425: gvdvk L--AnmE wnvfl EXP1_STRPN : 80- 83: kaksa Lq-A--E gvtfp HBPA_HAEIN : 89- 91: diepa L--A--E sweis HBPA_HAEIN : 373- 376: ekakq Ll-A--E agypn HBPA_HAEIN : 374- 376: kakql L--A--E agypn NIKA_ECOLI : 285- 289: aptne L--AvrE alnya OPPA_BACSU : 497- 501: krael LkkA--E gifid OPPA_ECOLI : 35- 37: pagvt L--A--E kqtlv OPPA_ECOLI : 250- 255: nqvty LpiAs-E vtdvn OPPA_ECOLI : 373- 376: eeakk Ll-A--E agyta OPPA_ECOLI : 374- 376: eakkl L--A--E agyta OPPA_LACLA : 497- 500: dgsws L--As-E psqqd OPPA_LACLC : 21- 24: dgsws L--As-E psqqd OPPA_SALTY : 372- 375: eeakk Ll-A--E agfta OPPA_SALTY : 373- 375: eakkl L--A--E agfta OPPA_SALTY : 490- 495: tqrse Ly-AkaE qqldk SAPA_HAEIN : 141- 143: tylpt L--A--E tnvty SAPA_SALTY : 85- 87: rlvpe L--A--E swevl SAPA_SALTY : 396- 400: wnpsp LktA--E liqad XP55_STRLI : 148- 153: tarse Ld-AvrE rsara XP55_STRLI : 265- 270: vlppn La-AtfE kddgr Y213_HAEIN : 92- 98: dvqgn LvpAvaE nwqte Y213_HAEIN : 170- 173: veslg Lf-A--E ndrtl R 18: 10.5102 24( 16) P-x(1,3)-A-x(0,2)-D Occurences: 24(16) AMIA_STRPN : 80- 85: ygnla Pav-Ae-D wevsk APPA_BACSU : 191- 194: ilgnv Pi--A--D leene DPPA_ECOLI : 173- 177: trpea Pfl-A--D lamdf DPPA_ECOLI : 268- 272: qvmpy Pnp-A--D iarmk DPPA_ECOLI : 473- 478: edliq Par-At-D dhnkr DPPA_ECOLI : 473- 479: edliq Par-AtdD hnkrv DPPE_BACSU : 119- 124: wtngd Pvt-Ag-D feyaw DPPE_BACSU : 206- 213: vdkdn PkwfAesD tfvgn DPPE_BACSU : 447- 451: qssfl Pdy-A--D pisfl EXP1_STRPN : 159- 163: nvgwg Pdf-A--D HBPA_HAEIN : 279- 283: dlilf Pnv-A--D lakmk NIKA_ECOLI : 436- 440: ssmrv Psh-A--D fqaqq OPPA_BACSU : 55- 60: pfslh Pgl-An-D svsgg OPPA_BACSU : 115- 120: wsngd Pvt-Aq-D feyaw OPPA_ECOLI : 113- 118: wsdgt Pvt-Aq-D fvysw OPPA_LACLA : 482- 487: dhmtt Ppg-An-D wditd OPPA_LACLA : 483- 487: hmttp Pg--An-D wditd OPPA_LACLC : 6- 11: dhmtt Ppg-An-D wditd OPPA_LACLC : 7- 11: hmttp Pg--An-D wditd OPPA_SALTY : 23- 27: liaat Pta-A--D vpagv OPPA_SALTY : 23- 27: liaat Pt--Aa-D vpagv OPPA_SALTY : 112- 117: wsdgt Pvt-Ah-D fvysw SAPA_HAEIN : 49- 53: gfsfn Pqt-A--D agtsm SAPA_SALTY : 25- 32: taata PeqtAsaD irdsg XP55_STRLI : 123- 128: fsdge Plt-Ag-D vytyr Y213_HAEIN : 123- 128: wsnge Pit-As-D fvqsw S 19: 8.3401 81( 16) L-A Occurences: 81(16) AMIA_STRPN : 15- 16: aglvl LA agvla AMIA_STRPN : 20- 21: laagv LA acsss AMIA_STRPN : 78- 79: dnygn LA pavae AMIA_STRPN : 138- 139: seamy LA ensvk AMIA_STRPN : 146- 147: nsvkg LA dylsg AMIA_STRPN : 252- 253: ldtin LA yydgs AMIA_STRPN : 364- 365: kdgaa LA vrnlf AMIA_STRPN : 403- 404: wkgvn LA dgqdg AMIA_STRPN : 654- 655: kaqke LA shvk APPA_BACSU : 17- 18: svlmv LA iflsa APPA_BACSU : 92- 93: nvkls LA esike APPA_BACSU : 103- 104: eldgg LA ydvki APPA_BACSU : 285- 286: kivtd LA lsyvy APPA_BACSU : 362- 363: kakqm LA eagwk APPA_BACSU : 541- 542: iekww LA k DPPA_ECOLI : 78- 79: evipg LA ekwev DPPA_ECOLI : 175- 176: peapf LA dlamd DPPA_ECOLI : 178- 179: pflad LA mdfas DPPE_BACSU : 12- 13: lwgmg LA lglsf DPPE_BACSU : 421- 422: gvdvk LA nmewn EXP1_STRPN : 56- 57: wkdvn LA dsqdg HBPA_HAEIN : 9- 10: katlt LA aatlv HBPA_HAEIN : 16- 17: aatlv LA acdqs HBPA_HAEIN : 89- 90: diepa LA eswei HBPA_HAEIN : 186- 187: tdatf LA slgmd HBPA_HAEIN : 284- 285: pnvad LA kmktd HBPA_HAEIN : 374- 375: kakql LA eagyp NIKA_ECOLI : 13- 14: tlfal LA casfi NIKA_ECOLI : 72- 73: svipw LA kswth NIKA_ECOLI : 125- 126: hawle LA nqivd NIKA_ECOLI : 155- 156: pflqe LA lprpf NIKA_ECOLI : 273- 274: ietvm LA lntak NIKA_ECOLI : 285- 286: aptne LA vreal NIKA_ECOLI : 447- 448: qaqqg LA dkpli NIKA_ECOLI : 461- 462: eigev LA thdet OPPA_BACSU : 57- 58: slhpg LA ndsvs OPPA_ECOLI : 15- 16: vaagv LA almag OPPA_ECOLI : 25- 26: agnva LA advpa OPPA_ECOLI : 35- 36: pagvt LA ekqtl OPPA_ECOLI : 374- 375: eakkl LA eagyt OPPA_ECOLI : 400- 401: dlhkk LA iaass OPPA_LACLA : 9- 10: lkvtl LA ssvvl OPPA_LACLA : 15- 16: assvv LA atlls OPPA_LACLA : 162- 163: rwtds LA nivgl OPPA_LACLA : 230- 231: vapkd LA sspkt OPPA_LACLA : 497- 498: dgsws LA sepsq OPPA_LACLA : 597- 598: vssak LA tk OPPA_LACLC : 21- 22: dgsws LA sepsq OPPA_LACLC : 121- 122: vssak LA tk OPPA_SALTY : 34- 35: pagvq LA dkqtl OPPA_SALTY : 125- 126: yswqr LA dpnta OPPA_SALTY : 320- 321: rtalk LA ldrdi OPPA_SALTY : 373- 374: eakkl LA eagft OPPA_SALTY : 399- 400: dlhkk LA iavas SAPA_HAEIN : 83- 84: tltpm LA qsysi SAPA_HAEIN : 141- 142: tylpt LA etnvt SAPA_HAEIN : 203- 204: silsh LA sqyai SAPA_HAEIN : 225- 226: saddn LA qldth SAPA_HAEIN : 318- 319: tdgmn LA ylafn SAPA_HAEIN : 321- 322: mnlay LA fnfdk SAPA_HAEIN : 391- 392: iaknk LA dknll SAPA_HAEIN : 424- 425: mikwd LA qagvk SAPA_HAEIN : 460- 461: ilsgw LA gnldp SAPA_SALTY : 63- 64: livdt LA aqlyd SAPA_SALTY : 85- 86: rlvpe LA eswev SAPA_SALTY : 185- 186: sflwh LA thyas SAPA_SALTY : 272- 273: gecdv LA wpaas SAPA_SALTY : 302- 303: mniay LA fntdk SAPA_SALTY : 320- 321: avrha LA lsinn SAPA_SALTY : 486- 487: lssqq LA sriea SAPA_SALTY : 509- 510: lpilp LA sslrl XP55_STRLI : 82- 83: ifdgl LA rdtdl XP55_STRLI : 94- 95: elkpa LA aalpk XP55_STRLI : 265- 266: vlppn LA atfek XP55_STRLI : 348- 349: erprd LA aagri XP55_STRLI : 393- 394: rqdha LA yasda XP55_STRLI : 426- 427: ktdav LA dlgsv XP55_STRLI : 447- 448: llhst LA gdgfn XP55_STRLI : 508- 509: dhlyv LA drwdg Y213_HAEIN : 147- 148: plkny LA fmnlk Y213_HAEIN : 193- 194: ylpsm LA hvsll T 20: 8.3401 58( 16) K-L Occurences: 58(16) AMIA_STRPN : 184- 185: pfwns KL tysif AMIA_STRPN : 550- 551: lkeyd KL vdeaa AMIA_STRPN : 621- 622: yfkyl KL qdkav APPA_BACSU : 85- 86: tktde KL nvkls APPA_BACSU : 89- 90: eklnv KL slaes APPA_BACSU : 163- 164: yevlf KL kykdg APPA_BACSU : 223- 224: qgqyi KL eandd APPA_BACSU : 475- 476: naead KL mkdak DPPA_ECOLI : 12- 13: ksgml KL glslv DPPA_ECOLI : 202- 203: agtpe KL dlnpi DPPA_ECOLI : 256- 257: svrya KL qknec DPPE_BACSU : 6- 7: mkrvk KL wgmgl DPPE_BACSU : 222- 223: gngpf KL tewkh DPPE_BACSU : 247- 248: dkdtv KL dkvkw DPPE_BACSU : 386- 387: eenyn KL paitl DPPE_BACSU : 410- 411: eaiqq KL knslg DPPE_BACSU : 420- 421: lgvdv KL anmew EXP1_STRPN : 43- 44: dmvke KL vtygd HBPA_HAEIN : 2- 3: m KL katlt HBPA_HAEIN : 267- 268: ttrya KL qagtc HBPA_HAEIN : 495- 496: keera KL ykqaq NIKA_ECOLI : 193- 194: ilqes KL nqydv OPPA_BACSU : 244- 245: dkdkv KL kkidm OPPA_BACSU : 392- 393: dlpki KL syntd OPPA_BACSU : 433- 434: nvyid KL hsqdy OPPA_BACSU : 479- 480: npefk KL lnqsq OPPA_ECOLI : 183- 184: vpyfy KL lvhps OPPA_ECOLI : 281- 282: ielfq KL kkeip OPPA_ECOLI : 320- 321: vrtal KL gmdrd OPPA_ECOLI : 352- 353: ytdga KL tqpew OPPA_ECOLI : 372- 373: neeak KL laeag OPPA_ECOLI : 399- 400: sdlhk KL aiaas OPPA_ECOLI : 417- 418: igvnv KL vnqew OPPA_LACLA : 3- 4: mn KL kvtll OPPA_LACLA : 35- 36: ststk KL kagnf OPPA_LACLA : 271- 272: wgekp KL nsity OPPA_LACLA : 408- 409: ldkan KL ldedg OPPA_LACLA : 416- 417: dedgw KL nkstg OPPA_LACLA : 468- 469: slyng KL mefns OPPA_LACLA : 596- 597: gvssa KL atk OPPA_LACLC : 120- 121: gvssa KL atk OPPA_SALTY : 182- 183: vpyfy KL lvhps OPPA_SALTY : 217- 218: tngay KL knwvv OPPA_SALTY : 280- 281: ielfq KL kkeip OPPA_SALTY : 319- 320: vrtal KL aldrd OPPA_SALTY : 351- 352: ytdga KL vepew OPPA_SALTY : 371- 372: neeak KL laeag OPPA_SALTY : 398- 399: sdlhk KL aiava OPPA_SALTY : 473- 474: spafd KL iadtl SAPA_HAEIN : 68- 69: eqiyn KL fdikn SAPA_HAEIN : 172- 173: yfdsi KL nekik SAPA_HAEIN : 390- 391: kiakn KL adknl SAPA_SALTY : 119- 120: ftptr KL naddv SAPA_SALTY : 263- 264: tgrls KL ltgec XP55_STRLI : 217- 218: wskge KL gfran Y213_HAEIN : 26- 27: vvacd KL dspkp Y213_HAEIN : 356- 357: etrpl KL riryd Y213_HAEIN : 464- 465: lenya KL kgivq Number of patterns evaluated by Pratt:1220 Total running time: 3 seconds