------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file SAR1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename SAR1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: SAR1_ARATH 193 SAR1_SCHPO 190 SAR1_YEAST 190 SARA_MOUSE 198 Pratt run started at Thu Feb 6 21:11:36 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 149.1218 4( 4) F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H 2: 144.9518 4( 4) L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H 3: 140.7817 4( 4) N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R 4: 140.7817 4( 4) D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R 5: 140.7817 4( 4) L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A 6: 140.7817 4( 4) G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H 7: 140.7817 4( 4) K-x(2)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L 8: 136.6117 4( 4) G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R-x-W 9: 136.6117 4( 4) A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R 10: 132.4416 4( 4) K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R-x-W 11: 132.4416 7( 4) L-x(1,3)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G 12: 129.2716 4( 4) G-x(3)-K-x(2)-K-x(2)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I 13: 129.2716 4( 4) L-x(4)-K-x(2)-K-x(2)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I 14: 128.7716 5( 4) L-x(3,4)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G 15: 128.7716 4( 4) K-x(4)-L-x(0,1)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F 16: 128.7716 4( 4) G-x(3)-K-x(1,2)-K-x(2)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I 17: 128.2716 4( 4) T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R-x-W-x(2)-Y 18: 128.2716 4( 4) T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F-x(2)-F-D-L-G-G-H-x(2)-A-R-R-x-W 19: 128.2716 4( 4) K-x(5)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I-x(4)-F 20: 128.2716 5( 4) L-x(2,3)-K-x(2,3)-K-x(2)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(2)-R-L-x(4)-P-T-x-H-P-T-S-E-E-L-x-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 163.4894 4( 4) F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H B 2: 161.2220 4( 4) K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L C 3: 159.3194 4( 4) L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H D 4: 155.1494 4( 4) N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R E 5: 155.1494 4( 4) D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R F 6: 155.1494 4( 4) L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A G 7: 155.1494 4( 4) G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H H 8: 154.1630 4( 4) G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W I 9: 153.1538 7( 4) L-x(1,3)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G J 10: 152.8540 4( 4) K-x-[AG]-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F K 11: 152.2451 4( 4) T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W-[KR]-[DN]-Y L 12: 150.9793 4( 4) A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R M 13: 149.9930 4( 4) K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W N 14: 149.5623 4( 4) G-x(3)-K-x(1,2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG] O 15: 149.4838 5( 4) L-x(3,4)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G P 16: 149.0711 4( 4) T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W-[KR] Q 17: 149.0623 5( 4) L-x(2,3)-K-x(2,3)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG] R 18: 146.8922 4( 4) G-x(3)-K-x(2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I S 19: 146.8922 4( 4) L-x(4)-K-x(2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I T 20: 146.2858 4( 4) K-x(4)-L-x(0,1)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F Best patterns with alignements: fitness hits(seqs) Pattern A 1: 163.4894 4( 4) F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H Occurences: 4(4) SAR1_ARATH : 25- 74: eakil FLGLDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGH qiarr SAR1_SCHPO : 25- 74: hakml FLGLDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGH qqarr SAR1_YEAST : 28- 77: hgkll FLGLDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGH iqarr SARA_MOUSE : 30- 79: sgklv FLGLDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr SARA_MOUSE : 30- 79: sgklv FLGLDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr B 2: 161.2220 4( 4) K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L Occurences: 4(4) SAR1_ARATH : 22- 71: wqkea KILFLGLDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDL gghqi SAR1_SCHPO : 22- 71: vnkha KMLFLGLDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDL gghqq SAR1_YEAST : 25- 74: wnkhg KLLFLGLDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDL gghiq SARA_MOUSE : 27- 76: ykksg KLVFLGLDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDL ggheq SARA_MOUSE : 27- 76: ykksg KLVFLGLDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDL ggheq C 3: 159.3194 4( 4) L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H Occurences: 4(4) SAR1_ARATH : 26- 74: akilf LGLDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGH qiarr SAR1_SCHPO : 26- 74: akmlf LGLDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGH qqarr SAR1_YEAST : 29- 77: gkllf LGLDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGH iqarr SARA_MOUSE : 31- 79: gklvf LGLDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr SARA_MOUSE : 31- 79: gklvf LGLDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr D 4: 155.1494 4( 4) N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R Occurences: 4(4) SAR1_ARATH : 30- 79: flgld NAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARR vwkdy SAR1_SCHPO : 30- 79: flgld NAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARR lwrdy SAR1_YEAST : 33- 82: flgld NAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARR lwkdy SARA_MOUSE : 35- 84: flgld NAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARR vwkny SARA_MOUSE : 35- 84: flgld NAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARR vwkny E 5: 155.1494 4( 4) D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R Occurences: 4(4) SAR1_ARATH : 29- 78: lflgl DNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiAR rvwkd SAR1_SCHPO : 29- 78: lflgl DNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqAR rlwrd SAR1_YEAST : 32- 81: lflgl DNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqAR rlwkd SARA_MOUSE : 34- 83: vflgl DNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqAR rvwkn SARA_MOUSE : 34- 83: vflgl DNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqAR rvwkn F 6: 155.1494 4( 4) L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A Occurences: 4(4) SAR1_ARATH : 28- 77: ilflg LDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiA rrvwk SAR1_SCHPO : 28- 77: mlflg LDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqA rrlwr SAR1_YEAST : 31- 80: llflg LDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqA rrlwk SARA_MOUSE : 33- 82: lvflg LDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqA rrvwk SARA_MOUSE : 33- 82: lvflg LDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqA rrvwk G 7: 155.1494 4( 4) G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H Occurences: 4(4) SAR1_ARATH : 27- 74: kilfl GLDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGH qiarr SAR1_SCHPO : 27- 74: kmlfl GLDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGH qqarr SAR1_YEAST : 30- 77: kllfl GLDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGH iqarr SARA_MOUSE : 32- 79: klvfl GLDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr SARA_MOUSE : 32- 79: klvfl GLDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGH eqarr H 8: 154.1630 4( 4) G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W Occurences: 4(4) SAR1_ARATH : 32- 81: gldna GKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARRVW kdyya SAR1_SCHPO : 32- 81: gldna GKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARRLW rdyfp SAR1_YEAST : 35- 84: gldna GKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARRLW kdyfp SARA_MOUSE : 37- 86: gldna GKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVW knylp SARA_MOUSE : 37- 86: gldna GKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVW knylp I 9: 153.1538 7( 4) L-x(1,3)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G Occurences: 7(4) SAR1_ARATH : 24- 73: keaki LflgLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIGkIkFkAFDLGG hqiar SAR1_ARATH : 26- 73: akilf Lg--LDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIGkIkFkAFDLGG hqiar SAR1_SCHPO : 24- 73: khakm LflgLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIGnVrFtTFDLGG hqqar SAR1_SCHPO : 26- 73: akmlf Lg--LDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIGnVrFtTFDLGG hqqar SAR1_YEAST : 27- 76: khgkl LflgLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIGnIkFtTFDLGG hiqar SAR1_YEAST : 29- 76: gkllf Lg--LDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIGnIkFtTFDLGG hiqar SARA_MOUSE : 31- 78: gklvf Lg--LDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIAgMtFtTFDLGG heqar J 10: 152.8540 4( 4) K-x-[AG]-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F Occurences: 4(4) SAR1_ARATH : 19- 66: lglwq KeAKILFLGLDNAGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkF kafdl SAR1_SCHPO : 19- 66: lglvn KhAKMLFLGLDNAGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrF ttfdl SAR1_YEAST : 22- 69: lglwn KhGKLLFLGLDNAGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkF ttfdl SARA_MOUSE : 24- 71: lglyk KsGKLVFLGLDNAGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtF ttfdl SARA_MOUSE : 24- 71: lglyk KsGKLVFLGLDNAGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtF ttfdl K 11: 152.2451 4( 4) T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W-[KR]-[DN]-Y Occurences: 4(4) SAR1_ARATH : 35- 84: nagkt TLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARRVWKDY yakvd SAR1_SCHPO : 35- 84: nagkt TLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARRLWRDY fpevn SAR1_YEAST : 38- 87: nagkt TLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARRLWKDY fpevn SARA_MOUSE : 40- 89: nagkt TLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVWKNY lpain SARA_MOUSE : 40- 89: nagkt TLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVWKNY lpain L 12: 150.9793 4( 4) A-G-K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R Occurences: 4(4) SAR1_ARATH : 31- 79: lgldn AGKTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARR vwkdy SAR1_SCHPO : 31- 79: lgldn AGKTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARR lwrdy SAR1_YEAST : 34- 82: lgldn AGKTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARR lwkdy SARA_MOUSE : 36- 84: lgldn AGKTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARR vwkny SARA_MOUSE : 36- 84: lgldn AGKTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARR vwkny M 13: 149.9930 4( 4) K-T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W Occurences: 4(4) SAR1_ARATH : 33- 81: ldnag KTTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARRVW kdyya SAR1_SCHPO : 33- 81: ldnag KTTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARRLW rdyfp SAR1_YEAST : 36- 84: ldnag KTTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARRLW kdyfp SARA_MOUSE : 38- 86: ldnag KTTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVW knylp SARA_MOUSE : 38- 86: ldnag KTTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVW knylp N 14: 149.5623 4( 4) G-x(3)-K-x(1,2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG] Occurences: 4(4) SAR1_ARATH : 15- 62: ilasl GlwqKeaKILFLGLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIG kikfk SAR1_SCHPO : 15- 62: alaml GlvnKhaKMLFLGLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIG nvrft SAR1_YEAST : 18- 65: vlasl GlwnKhgKLLFLGLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIG nikft SARA_MOUSE : 20- 67: vlqfl GlykKsgKLVFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIA gmtft O 15: 149.4838 5( 4) L-x(3,4)-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G Occurences: 5(4) SAR1_ARATH : 24- 72: keaki Lflg-LDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIGkIkFkAFDLG ghqia SAR1_SCHPO : 24- 72: khakm Lflg-LDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIGnVrFtTFDLG ghqqa SAR1_YEAST : 26- 75: nkhgk LlflgLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIGnIkFtTFDLG ghiqa SAR1_YEAST : 27- 75: khgkl Lflg-LDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIGnIkFtTFDLG ghiqa SARA_MOUSE : 28- 77: kksgk LvflgLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIAgMtFtTFDLG gheqa P 16: 149.0711 4( 4) T-T-L-L-x-M-L-K-x(0,1)-D-x(0,1)-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F-x-[AT]-F-D-L-G-G-H-x(2)-A-R-R-[LV]-W-[KR] Occurences: 4(4) SAR1_ARATH : 34- 82: dnagk TTLLhMLK-DeRLVqhqPTqHPTSEELSIGkIkFkAFDLGGHqiARRVWK dyyak SAR1_SCHPO : 34- 82: dnagk TTLLhMLKnD-RLAvmqPTlHPTSEELAIGnVrFtTFDLGGHqqARRLWR dyfpe SAR1_YEAST : 37- 85: dnagk TTLLhMLKnD-RLAtlqPTwHPTSEELAIGnIkFtTFDLGGHiqARRLWK dyfpe SARA_MOUSE : 39- 87: dnagk TTLLqMLKdD-RLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVWK nylpa SARA_MOUSE : 39- 87: dnagk TTLLqMLK-DdRLGqhvPTlHPTSEELTIAgMtFtTFDLGGHeqARRVWK nylpa Q 17: 149.0623 5( 4) L-x(2,3)-K-x(2,3)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG] Occurences: 5(4) SAR1_ARATH : 16- 62: laslg Lwq-Kea-KILFLGLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIG kikfk SAR1_SCHPO : 16- 62: lamlg Lvn-Kha-KMLFLGLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIG nvrft SAR1_YEAST : 19- 65: laslg Lwn-Khg-KLLFLGLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIG nikft SARA_MOUSE : 19- 67: svlqf LglyKksgKLVFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIA gmtft SARA_MOUSE : 21- 67: lqflg Lyk-Ksg-KLVFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIA gmtft R 18: 146.8922 4( 4) G-x(3)-K-x(2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I Occurences: 4(4) SAR1_ARATH : 15- 61: ilasl GlwqKeaKILFLGLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSI gkikf SAR1_SCHPO : 15- 61: alaml GlvnKhaKMLFLGLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAI gnvrf SAR1_YEAST : 18- 64: vlasl GlwnKhgKLLFLGLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAI gnikf SARA_MOUSE : 20- 66: vlqfl GlykKsgKLVFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTI agmtf S 19: 146.8922 4( 4) L-x(4)-K-x(2)-K-[ILM]-[LV]-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I Occurences: 4(4) SAR1_ARATH : 14- 61: gilas LglwqKeaKILFLGLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSI gkikf SAR1_SCHPO : 14- 61: dalam LglvnKhaKMLFLGLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAI gnvrf SAR1_YEAST : 17- 64: dvlas LglwnKhgKLLFLGLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAI gnikf SARA_MOUSE : 19- 66: svlqf LglykKsgKLVFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTI agmtf T 20: 146.2858 4( 4) K-x(4)-L-x(0,1)-F-L-G-L-D-N-A-G-K-T-T-L-L-x-M-L-K-[DN]-[DE]-R-L-[AGV]-x(3)-P-T-x-H-P-T-S-E-E-L-[AST]-I-[AG]-x-[IMV]-x-F Occurences: 4(4) SAR1_ARATH : 19- 66: lglwq KeakiL-FLGLDNAGKTTLLhMLKDERLVqhqPTqHPTSEELSIGkIkF kafdl SAR1_SCHPO : 19- 66: lglvn KhakmL-FLGLDNAGKTTLLhMLKNDRLAvmqPTlHPTSEELAIGnVrF ttfdl SAR1_YEAST : 22- 69: lglwn KhgklL-FLGLDNAGKTTLLhMLKNDRLAtlqPTwHPTSEELAIGnIkF ttfdl SARA_MOUSE : 23- 71: flgly KksgkLvFLGLDNAGKTTLLqMLKDDRLGqhvPTlHPTSEELTIAgMtF ttfdl Number of patterns evaluated by Pratt:17587 Total running time: 2 seconds