------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file ROK PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ROK.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GLK_STRCO 317 NAGC_ECOLI 406 SCRK_PEDPE 288 SCRK_STRMU 293 SCRK_ZYMMO 301 XYLR_BACSU 384 XYLR_LACPE 388 XYLR_STAXY 383 XYLR_THER8 399 YAJF_ECOLI 302 YAJF_HAEIN 313 YHCI_ECOLI 302 YHCI_HAEIN 300 YJCT_ECOLI 309 YNGA_CLOPE 182 Pratt run started at Thu Feb 6 21:11:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 24( 15) G-x-G-x-G 2: 12.0102 26( 15) G-x-G-x(0,1)-G 3: 12.0102 29( 15) G-x(1,2)-G-x-G 4: 11.5102 23( 15) A-G-x(2,4)-G 5: 11.5102 33( 15) A-x(0,1)-G-x(2,3)-G 6: 11.5102 43( 15) G-x(0,1)-G-x(0,1)-G 7: 11.5102 22( 15) E-x(2,3)-A-x(2,3)-A 8: 11.5102 36( 15) G-x(0,1)-I-x(0,1)-G 9: 11.5102 38( 15) G-x(5)-G-x(2,4)-G 10: 11.5102 34( 15) I-x(0,1)-G-x(1,2)-G 11: 11.5102 25( 15) I-x(2)-G-x(1,3)-G 12: 11.5102 34( 15) I-x(1,2)-G-x(1,2)-G 13: 11.5102 53( 15) G-x(2,3)-G-x(1,2)-G 14: 11.0102 36( 15) G-x(0,1)-G-x(0,2)-I 15: 11.0102 27( 15) V-x(0,1)-G-x(0,2)-G 16: 11.0102 32( 15) V-x(3,4)-G-x(0,2)-G 17: 11.0102 16( 15) E-x(3,5)-L-x(0,1)-G 18: 11.0102 24( 15) G-x(0,2)-E-x(0,1)-G 19: 11.0102 30( 15) G-x(0,2)-L-x(0,1)-G 20: 11.0102 35( 15) I-x(1,3)-G-x(3,4)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.9932 16( 15) G-x-G-x-G-x-[AGIV]-x(4)-[GILV] B 2: 16.4932 16( 15) G-x-G-x(0,1)-G-x-[AGIV]-x(4)-[GILV] C 3: 16.1701 17( 15) G-x(1,2)-G-x-G-x-[AGIPV]-x(4)-[GILV] D 4: 14.1787 25( 15) G-x(0,1)-G-x(0,1)-G-[GIV] E 5: 13.4189 28( 15) G-x(2,3)-G-x(1,2)-G-x(4)-[AGILV] F 6: 13.1674 31( 15) G-x(4)-[ACDGSV]-G-x(2,4)-G G 7: 11.5102 23( 15) A-G-x(2,4)-G H 8: 11.5102 33( 15) A-x(0,1)-G-x(2,3)-G I 9: 11.5102 22( 15) E-x(2,3)-A-x(2,3)-A J 10: 11.5102 36( 15) G-x(0,1)-I-x(0,1)-G K 11: 11.5102 34( 15) I-x(0,1)-G-x(1,2)-G L 12: 11.5102 25( 15) I-x(2)-G-x(1,3)-G M 13: 11.5102 34( 15) I-x(1,2)-G-x(1,2)-G N 14: 11.0102 36( 15) G-x(0,1)-G-x(0,2)-I O 15: 11.0102 27( 15) V-x(0,1)-G-x(0,2)-G P 16: 11.0102 32( 15) V-x(3,4)-G-x(0,2)-G Q 17: 11.0102 16( 15) E-x(3,5)-L-x(0,1)-G R 18: 11.0102 24( 15) G-x(0,2)-E-x(0,1)-G S 19: 11.0102 30( 15) G-x(0,2)-L-x(0,1)-G T 20: 11.0102 35( 15) I-x(1,3)-G-x(3,4)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.9932 16( 15) G-x-G-x-G-x-[AGIV]-x(4)-[GILV] Occurences: 16(15) GLK_STRCO : 133- 144: itlgt GlGgGiIignkL rrghf NAGC_ECOLI : 223- 234: vrvhr GtGaGiIsngrI figrn SCRK_PEDPE : 132- 143: mtigt GvGaGvIsqnhI fngrt SCRK_STRMU : 132- 143: vyyti GtGiGaGaiqnG efigg SCRK_ZYMMO : 141- 152: vyvtv GtGfGgGvlidG kpihg XYLR_BACSU : 216- 227: asist GiGiGvIinnhL yrgvs XYLR_LACPE : 218- 229: lsihr GiGaGiIldkhL frgkq XYLR_STAXY : 213- 224: lsihk GiGaGiIinkkL yrgsn XYLR_THER8 : 216- 227: vsvgi GiGaGiVigeeV yrgak YAJF_ECOLI : 131- 142: favii GtGcGaGvafnG rahig YAJF_HAEIN : 140- 151: lglil GtGfGgGfvlnG kvhsg YAJF_HAEIN : 142- 153: lilgt GfGgGfVlngkV hsgqv YHCI_ECOLI : 143- 154: itvst GvGgGvVsgckL ltgpg YHCI_HAEIN : 132- 143: itvst GvGgGiVlnqiL qtgsr YJCT_ECOLI : 140- 151: laayl GtGmGfAvwmnG apwtg YNGA_CLOPE : 22- 33: aclti GtGiGgAliidG kvlhg B 2: 16.4932 16( 15) G-x-G-x(0,1)-G-x-[AGIV]-x(4)-[GILV] Occurences: 16(15) GLK_STRCO : 133- 144: itlgt GlGgGiIignkL rrghf NAGC_ECOLI : 223- 234: vrvhr GtGaGiIsngrI figrn SCRK_PEDPE : 132- 143: mtigt GvGaGvIsqnhI fngrt SCRK_STRMU : 132- 143: vyyti GtGiGaGaiqnG efigg SCRK_ZYMMO : 141- 152: vyvtv GtGfGgGvlidG kpihg XYLR_BACSU : 216- 227: asist GiGiGvIinnhL yrgvs XYLR_LACPE : 218- 229: lsihr GiGaGiIldkhL frgkq XYLR_STAXY : 213- 224: lsihk GiGaGiIinkkL yrgsn XYLR_THER8 : 216- 227: vsvgi GiGaGiVigeeV yrgak YAJF_ECOLI : 131- 142: favii GtGcGaGvafnG rahig YAJF_HAEIN : 140- 151: lglil GtGfGgGfvlnG kvhsg YAJF_HAEIN : 142- 153: lilgt GfGgGfVlngkV hsgqv YHCI_ECOLI : 143- 154: itvst GvGgGvVsgckL ltgpg YHCI_HAEIN : 132- 142: itvst GvG-GgIvlnqI lqtgs YHCI_HAEIN : 132- 143: itvst GvGgGiVlnqiL qtgsr YJCT_ECOLI : 140- 151: laayl GtGmGfAvwmnG apwtg YNGA_CLOPE : 22- 33: aclti GtGiGgAliidG kvlhg C 3: 16.1701 17( 15) G-x(1,2)-G-x-G-x-[AGIPV]-x(4)-[GILV] Occurences: 17(15) GLK_STRCO : 133- 144: itlgt Gl-GgGiIignkL rrghf NAGC_ECOLI : 223- 234: vrvhr Gt-GaGiIsngrI figrn SCRK_PEDPE : 132- 143: mtigt Gv-GaGvIsqnhI fngrt SCRK_STRMU : 132- 143: vyyti Gt-GiGaGaiqnG efigg SCRK_ZYMMO : 141- 152: vyvtv Gt-GfGgGvlidG kpihg XYLR_BACSU : 216- 227: asist Gi-GiGvIinnhL yrgvs XYLR_LACPE : 218- 229: lsihr Gi-GaGiIldkhL frgkq XYLR_STAXY : 213- 224: lsihk Gi-GaGiIinkkL yrgsn XYLR_THER8 : 139- 151: pptqk GilGiGiGvpgiV eknsg XYLR_THER8 : 216- 227: vsvgi Gi-GaGiVigeeV yrgak YAJF_ECOLI : 131- 142: favii Gt-GcGaGvafnG rahig YAJF_HAEIN : 140- 151: lglil Gt-GfGgGfvlnG kvhsg YAJF_HAEIN : 142- 153: lilgt Gf-GgGfVlngkV hsgqv YHCI_ECOLI : 143- 154: itvst Gv-GgGvVsgckL ltgpg YHCI_HAEIN : 132- 143: itvst Gv-GgGiVlnqiL qtgsr YJCT_ECOLI : 140- 151: laayl Gt-GmGfAvwmnG apwtg YNGA_CLOPE : 22- 33: aclti Gt-GiGgAliidG kvlhg D 4: 14.1787 25( 15) G-x(0,1)-G-x(0,1)-G-[GIV] Occurences: 25(15) GLK_STRCO : 131- 136: icitl GtGlGG giiig GLK_STRCO : 133- 137: itlgt GlG-GG iiign GLK_STRCO : 133- 138: itlgt GlGgGI iignk GLK_STRCO : 135- 138: lgtgl G-G-GI iignk NAGC_ECOLI : 223- 228: vrvhr GtGaGI isngr SCRK_PEDPE : 132- 137: mtigt GvGaGV isqnh SCRK_STRMU : 234- 237: qvivf G-G-GV maqeh SCRK_ZYMMO : 141- 146: vyvtv GtGfGG gvlid SCRK_ZYMMO : 143- 147: vtvgt GfG-GG vlidg SCRK_ZYMMO : 143- 148: vtvgt GfGgGV lidgk SCRK_ZYMMO : 145- 148: vgtgf G-G-GV lidgk SCRK_ZYMMO : 243- 246: erivf G-G-GV mhvdg XYLR_BACSU : 216- 221: asist GiGiGV iinnh XYLR_LACPE : 218- 223: lsihr GiGaGI ildkh XYLR_STAXY : 213- 218: lsihk GiGaGI iinkk XYLR_THER8 : 142- 147: qkgil GiGiGV pgive XYLR_THER8 : 216- 221: vsvgi GiGaGI vigee YAJF_ECOLI : 133- 138: viigt GcGaGV afngr YAJF_HAEIN : 140- 145: lglil GtGfGG gfvln YAJF_HAEIN : 142- 146: lilgt GfG-GG fvlng YHCI_ECOLI : 143- 147: itvst GvG-GG vvsgc YHCI_ECOLI : 143- 148: itvst GvGgGV vsgck YHCI_ECOLI : 145- 148: vstgv G-G-GV vsgck YHCI_HAEIN : 132- 136: itvst GvG-GG ivlnq YHCI_HAEIN : 132- 137: itvst GvGgGI vlnqi YHCI_HAEIN : 134- 137: vstgv G-G-GI vlnqi YJCT_ECOLI : 245- 248: davil G-G-GV mdmpa YNGA_CLOPE : 22- 27: aclti GtGiGG aliid YNGA_CLOPE : 126- 129: evvvl G-G-GI maree E 5: 13.4189 28( 15) G-x(2,3)-G-x(1,2)-G-x(4)-[AGILV] Occurences: 28(15) GLK_STRCO : 208- 220: lalgd GtpdGieGkhisV aarqg GLK_STRCO : 298- 310: iaaql GnkaGlvGaadlA repdp NAGC_ECOLI : 237- 248: grifi Grn-GnvGeighI qvepl SCRK_PEDPE : 186- 198: agpav GkrtGkaGkdipV ddpvw SCRK_PEDPE : 269- 281: vpagl GnnsGiaGglllA qaalk SCRK_STRMU : 132- 143: vyyti GtgiGa-GaiqnG efigg SCRK_STRMU : 143- 155: gaiqn GefiGgmGhteaG hvyma SCRK_ZYMMO : 9- 20: dkkiy GcieGg-GtkfmL alids SCRK_ZYMMO : 141- 152: vyvtv GtgfGg-GvlidG kpihg SCRK_ZYMMO : 283- 295: vlpgl GdqaGmmGafalA laaen XYLR_BACSU : 140- 150: pqspy Gli-Gi-GicvpG lidkn XYLR_BACSU : 302- 313: alqnf GfylGi-GltniL ntfnp XYLR_LACPE : 235- 246: frgkq Gea-GevGrsltL lgpnt XYLR_STAXY : 230- 241: yrgsn Gea-GeiGktlvL esinn XYLR_THER8 : 139- 149: pptqk Gil-Gi-GigvpG ivekn YAJF_ECOLI : 55- 66: aeqat Gqr-GtvGmgipG sispy YAJF_ECOLI : 58- 68: atgqr Gtv-Gm-GipgsI spytg YAJF_ECOLI : 131- 142: favii GtgcGa-GvafnG rahig YAJF_HAEIN : 64- 75: adekf Gev-GtvGlgvpG fvnqq YAJF_HAEIN : 67- 77: kfgev Gtv-Gl-GvpgfV nqqtg YAJF_HAEIN : 140- 151: lglil GtgfGg-GfvlnG kvhsg YAJF_HAEIN : 156- 167: gkvhs Gqv-GmaGelghL qlnyh YHCI_ECOLI : 174- 185: ladph GpvcGc-GrtgcV eaias YHCI_HAEIN : 163- 174: ladpn GaicGc-GrrgcV eaias YHCI_HAEIN : 274- 286: etakf GqdaGliGaaywV kdvll YJCT_ECOLI : 156- 167: gapwt Gah-GvaGelghI plgdm YJCT_ECOLI : 159- 170: wtgah Gva-GelGhiplG dmtqh YNGA_CLOPE : 7- 17: sriiw Gml-Gk-GthsmA cltig F 6: 13.1674 31( 15) G-x(4)-[ACDGSV]-G-x(2,4)-G Occurences: 31(15) GLK_STRCO : 112- 121: naaaw GeykfGGgk--G hrnvi GLK_STRCO : 131- 141: icitl GtglgGGiii-G nklrr GLK_STRCO : 164- 173: rmvpd GllcgCGsq--G cweqy GLK_STRCO : 206- 215: vllal GdgtpDGie--G khisv NAGC_ECOLI : 237- 246: grifi GrngnVGei--G hiqve NAGC_ECOLI : 254- 263: qvepl GerchCGnf--G cleti SCRK_PEDPE : 267- 276: yivpa GlgnnSGia--G gllla SCRK_PEDPE : 267- 277: yivpa GlgnnSGiag-G lllaq SCRK_STRMU : 132- 143: vyyti GtgigAGaiqnG efigg SCRK_ZYMMO : 141- 152: vyvtv GtgfgGGvlidG kpihg SCRK_ZYMMO : 146- 157: gtgfg GgvliDGkpihG lahpe SCRK_ZYMMO : 281- 290: iivlp GlgdqAGmm--G afala XYLR_BACSU : 230- 239: nhlyr GvsgfSGem--G hmtid XYLR_BACSU : 247- 256: tidfn GpkcsCGnr--G cwely XYLR_LACPE : 232- 241: khlfr GkqgeAGev--G rsltl XYLR_STAXY : 227- 236: kklyr GsngeAGei--G ktlvl XYLR_THER8 : 214- 224: lyvsv GigigAGivi-G eevyr XYLR_THER8 : 230- 239: eevyr GakgfAGev--G hmtid YAJF_ECOLI : 55- 66: aeqat GqrgtVGmgipG sispy YAJF_ECOLI : 131- 142: favii GtgcgAGvafnG rahig YAJF_ECOLI : 142- 153: gvafn GrahiGGngtaG ewghn YAJF_ECOLI : 147- 156: grahi GgngtAGew--G hnplp YAJF_HAEIN : 64- 75: adekf GevgtVGlgvpG fvnqq YAJF_HAEIN : 140- 151: lglil GtgfgGGfvlnG kvhsg YAJF_HAEIN : 156- 165: gkvhs GqvgmAGel--G hlqln YHCI_ECOLI : 157- 166: ckllt GpgglAGhi--G htlad YHCI_ECOLI : 174- 183: ladph GpvcgCGrt--G cveai YHCI_HAEIN : 146- 155: qilqt GsrgiAGhi--G htlad YHCI_HAEIN : 163- 172: ladpn GaicgCGrr--G cveai YJCT_ECOLI : 156- 165: gapwt GahgvAGel--G hiplg YNGA_CLOPE : 27- 38: gtgig GaliiDGkvlhG fsnsa YNGA_CLOPE : 38- 47: gkvlh GfsnsAGei--G ymmvn G 7: 11.5102 23( 15) A-G-x(2,4)-G Occurences: 23(15) GLK_STRCO : 301- 305: qlgnk AGlv--G aadla NAGC_ECOLI : 226- 232: hrgtg AGiisnG rifig SCRK_PEDPE : 181- 186: legla AGpav-G krtgk SCRK_STRMU : 137- 143: gtgig AGaiqnG efigg SCRK_ZYMMO : 286- 290: glgdq AGmm--G afala XYLR_BACSU : 79- 84: vfnkk AGysi-G idvgv XYLR_BACSU : 191- 195: enean AGay--G ekvfg XYLR_LACPE : 237- 241: gkqge AGev--G rsltl XYLR_STAXY : 232- 236: gsnge AGei--G ktlvl XYLR_THER8 : 191- 195: dnean AGal--G ekwfg XYLR_THER8 : 219- 224: gigig AGivi-G eevyr XYLR_THER8 : 235- 239: gakgf AGev--G hmtid YAJF_ECOLI : 136- 142: gtgcg AGvafnG rahig YAJF_ECOLI : 152- 156: ggngt AGew--G hnplp YAJF_HAEIN : 161- 165: gqvgm AGel--G hlqln YHCI_ECOLI : 162- 166: gpggl AGhi--G htlad YHCI_ECOLI : 288- 292: hyrhd AGll--G aalla YHCI_HAEIN : 151- 155: gsrgi AGhi--G htlad YHCI_HAEIN : 277- 281: kfgqd AGli--G aaywv YJCT_ECOLI : 9- 14: qhnvv AGvdm-G athir YJCT_ECOLI : 161- 165: gahgv AGel--G hiplg YNGA_CLOPE : 43- 47: gfsns AGei--G ymmvn YNGA_CLOPE : 167- 171: klknt AGmk--G ayynf H 8: 11.5102 33( 15) A-x(0,1)-G-x(2,3)-G Occurences: 33(15) GLK_STRCO : 301- 305: qlgnk A-Glv-G aadla NAGC_ECOLI : 88- 94: trnfh AiGvrlG rhdat SCRK_PEDPE : 16- 22: tkfvc AtGaenG qvsdr SCRK_PEDPE : 180- 186: clegl AaGpavG krtgk SCRK_PEDPE : 181- 186: legla A-GpavG krtgk SCRK_PEDPE : 184- 190: laagp AvGkrtG kagkd SCRK_STRMU : 59- 64: dlasv AiGsf-G pidid SCRK_ZYMMO : 286- 290: glgdq A-Gmm-G afala XYLR_BACSU : 79- 84: vfnkk A-GysiG idvgv XYLR_BACSU : 191- 195: enean A-Gay-G ekvfg XYLR_LACPE : 237- 241: gkqge A-Gev-G rsltl XYLR_STAXY : 232- 236: gsnge A-Gei-G ktlvl XYLR_THER8 : 191- 195: dnean A-Gal-G ekwfg XYLR_THER8 : 219- 224: gigig A-GiviG eevyr XYLR_THER8 : 231- 236: evyrg AkGfa-G evghm XYLR_THER8 : 235- 239: gakgf A-Gev-G hmtid YAJF_ECOLI : 16- 21: ktevi AlGda-G eqlyr YAJF_ECOLI : 53- 58: dmaeq AtGqr-G tvgmg YAJF_ECOLI : 152- 156: ggngt A-Gew-G hnplp YAJF_HAEIN : 161- 165: gqvgm A-Gel-G hlqln YHCI_ECOLI : 162- 166: gpggl A-Ghi-G htlad YHCI_ECOLI : 198- 204: giaaa AqGelaG adakt YHCI_ECOLI : 288- 292: hyrhd A-Gll-G aalla YHCI_HAEIN : 151- 155: gsrgi A-Ghi-G htlad YHCI_HAEIN : 238- 244: diqki AiGgsvG laegy YHCI_HAEIN : 277- 281: kfgqd A-Gli-G aaywv YJCT_ECOLI : 9- 14: qhnvv A-GvdmG athir YJCT_ECOLI : 42- 48: taevi ApGlvsG igemi YJCT_ECOLI : 157- 162: apwtg AhGva-G elghi YJCT_ECOLI : 161- 165: gahgv A-Gel-G hiplg YJCT_ECOLI : 177- 182: mtqhc AcGnp-G cletn YNGA_CLOPE : 43- 47: gfsns A-Gei-G ymmvn YNGA_CLOPE : 167- 171: klknt A-Gmk-G ayynf I 9: 11.5102 22( 15) E-x(2,3)-A-x(2,3)-A Occurences: 22(15) GLK_STRCO : 103- 109: lpvvv End-Ana-A awgey GLK_STRCO : 103- 110: lpvvv End-AnaaA wgeyk GLK_STRCO : 176- 183: sqgcw Eqy-AsgrA lvrya NAGC_ECOLI : 266- 272: nfgcl Eti-Aan-A aieqr NAGC_ECOLI : 266- 273: nfgcl EtiaAna-A ieqrv NAGC_ECOLI : 266- 273: nfgcl Eti-AanaA ieqrv SCRK_PEDPE : 177- 184: hdicl EglaAgp-A vgkrt SCRK_PEDPE : 177- 184: hdicl Egl-AagpA vgkrt SCRK_STRMU : 52- 59: ffkkf EadlAsv-A igsfg SCRK_ZYMMO : 189- 196: hggcy Egl-AsgtA irkrw SCRK_ZYMMO : 218- 225: fekar Eii-AfylA hfnvt XYLR_BACSU : 186- 193: vpvfi Ene-AnagA ygekv XYLR_BACSU : 259- 266: nrgcw Ely-AsekA llksl XYLR_LACPE : 188- 195: vpvil Ene-AnlsA iyerd XYLR_STAXY : 183- 190: vpvvi Ene-AnlsA lyeks XYLR_THER8 : 259- 266: nvgcl Enf-AserA llsli YAJF_ECOLI : 13- 20: ggtkt Evi-AlgdA geqly YAJF_ECOLI : 99- 106: arlqr EvrlAnd-A nclav YAJF_ECOLI : 229- 237: alrry ElrlAkslA hvvni YAJF_HAEIN : 108- 115: trlgr Evr-AendA ncfal YAJF_HAEIN : 112- 119: revra End-AncfA lseaw YHCI_ECOLI : 265- 273: ylalv EtylAqepA afhvd YHCI_HAEIN : 175- 182: rrgcv Eai-AsgrA ieavs YHCI_HAEIN : 215- 222: atalv Ers-AkaiA nliad YJCT_ECOLI : 224- 231: vqsll Ena-AraiA tsinl YNGA_CLOPE : 101- 108: ckeev Ekl-AdnlA lgisn J 10: 11.5102 36( 15) G-x(0,1)-I-x(0,1)-G Occurences: 36(15) GLK_STRCO : 61- 63: eivav G-I-G aagyv GLK_STRCO : 137- 141: tglgg GiIiG nklrr GLK_STRCO : 212- 215: dgtpd G-IeG khisv NAGC_ECOLI : 243- 246: rngnv GeI-G hiqve SCRK_PEDPE : 55- 57: pvdai G-I-G sfgpi SCRK_PEDPE : 60- 63: gigsf GpI-G vnphd SCRK_PEDPE : 273- 276: lgnns G-IaG gllla SCRK_STRMU : 134- 136: ytigt G-I-G agaiq SCRK_STRMU : 195- 198: leart G-IrG elieq SCRK_ZYMMO : 9- 13: dkkiy GcIeG ggtkf XYLR_BACSU : 140- 143: pqspy GlI-G igicv XYLR_BACSU : 143- 145: pygli G-I-G icvpg XYLR_BACSU : 216- 218: asist G-I-G igvii XYLR_BACSU : 218- 220: istgi G-I-G viinn XYLR_BACSU : 306- 308: fgfyl G-I-G ltnil XYLR_LACPE : 218- 220: lsihr G-I-G agiil XYLR_STAXY : 213- 215: lsihk G-I-G agiii XYLR_STAXY : 233- 236: sngea GeI-G ktlvl XYLR_THER8 : 78- 82: vnknv GlIiG idlgv XYLR_THER8 : 139- 142: pptqk G-IlG igigv XYLR_THER8 : 142- 144: qkgil G-I-G igvpg XYLR_THER8 : 144- 146: gilgi G-I-G vpgiv XYLR_THER8 : 214- 216: lyvsv G-I-G igagi XYLR_THER8 : 216- 218: vsvgi G-I-G agivi XYLR_THER8 : 320- 322: iankl G-I-G ianlv YAJF_ECOLI : 63- 66: gtvgm G-IpG sispy YAJF_HAEIN : 136- 140: ystvl GlIlG tgfgg YHCI_ECOLI : 163- 166: pggla GhI-G htlad YHCI_HAEIN : 149- 152: qtgsr G-IaG hight YHCI_HAEIN : 152- 155: srgia GhI-G htlad YHCI_HAEIN : 163- 167: ladpn GaIcG cgrrg YHCI_HAEIN : 278- 281: fgqda GlI-G aaywv YHCI_HAEIN : 296- 300: ldkpe GtIyG YJCT_ECOLI : 48- 50: pglvs G-I-G emide YNGA_CLOPE : 24- 26: ltigt G-I-G galii YNGA_CLOPE : 24- 27: ltigt G-IgG aliid YNGA_CLOPE : 44- 47: fsnsa GeI-G ymmvn K 11: 11.5102 34( 15) I-x(0,1)-G-x(1,2)-G Occurences: 34(15) GLK_STRCO : 62- 66: ivavg I-GaaG yvnrq GLK_STRCO : 257- 261: dpsaf IvGg-G lsdeg NAGC_ECOLI : 236- 240: ngrif I-GrnG nvgei SCRK_PEDPE : 54- 57: hpvda I-Gi-G sfgpi SCRK_PEDPE : 56- 60: vdaig I-GsfG pigvn SCRK_PEDPE : 129- 132: siymt I-Gt-G vgagv SCRK_STRMU : 60- 64: lasva I-GsfG pidid SCRK_STRMU : 131- 134: lvyyt I-Gt-G igaga SCRK_STRMU : 135- 138: tigtg I-Ga-G aiqng SCRK_STRMU : 146- 150: qngef IgGm-G hteag SCRK_STRMU : 146- 150: qngef I-GgmG hteag SCRK_ZYMMO : 11- 15: kiygc IeGg-G tkfml XYLR_BACSU : 59- 62: nlvfe I-Gq-G qssgg XYLR_BACSU : 142- 145: spygl I-Gi-G icvpg XYLR_BACSU : 217- 220: sistg I-Gi-G viinn XYLR_LACPE : 141- 146: tqvha IhGllG icfsi XYLR_LACPE : 219- 222: sihrg I-Ga-G iildk XYLR_STAXY : 214- 217: sihkg I-Ga-G iiink XYLR_THER8 : 140- 144: ptqkg IlGi-G igvpg XYLR_THER8 : 143- 146: kgilg I-Gi-G vpgiv XYLR_THER8 : 145- 149: ilgig I-GvpG ivekn XYLR_THER8 : 215- 218: yvsvg I-Gi-G agivi XYLR_THER8 : 217- 220: svgig I-Ga-G ivige YAJF_ECOLI : 129- 133: tvfav IiGt-G cgagv YAJF_ECOLI : 130- 133: vfavi I-Gt-G cgagv YAJF_ECOLI : 146- 150: ngrah IgGn-G tagew YAJF_ECOLI : 146- 150: ngrah I-GgnG tagew YAJF_ECOLI : 188- 192: cietf IsGt-G famdy YAJF_HAEIN : 138- 142: tvlgl IlGt-G fgggf YHCI_ECOLI : 29- 33: laaal I-GadG qirdr YHCI_HAEIN : 150- 155: tgsrg IaGhiG htlad YHCI_HAEIN : 165- 169: dpnga IcGc-G rrgcv YHCI_HAEIN : 239- 244: iqkia IgGsvG laegy YJCT_ECOLI : 243- 247: dpdav IlGg-G vmdmp YNGA_CLOPE : 5- 10: nsri IwGmlG kgths YNGA_CLOPE : 21- 24: maclt I-Gt-G iggal L 12: 11.5102 25( 15) I-x(2)-G-x(1,3)-G Occurences: 25(15) GLK_STRCO : 128- 133: rnvic ItlGt--G lgggi GLK_STRCO : 128- 135: rnvic ItlGtglG ggiii NAGC_ECOLI : 234- 240: isngr IfiGrn-G nvgei SCRK_PEDPE : 54- 60: hpvda IgiGsf-G pigvn SCRK_PEDPE : 129- 134: siymt IgtGv--G agvis SCRK_PEDPE : 129- 136: siymt IgtGvgaG visqn SCRK_STRMU : 131- 136: lvyyt IgtGi--G agaiq SCRK_STRMU : 131- 138: lvyyt IgtGigaG aiqng SCRK_STRMU : 140- 147: igaga IqnGefiG gmght SCRK_STRMU : 231- 236: yrpqv IvfGg--G vmaqe SCRK_ZYMMO : 240- 245: isper IvfGg--G vmhvd XYLR_BACSU : 59- 66: nlvfe IgqGqssG grrpv XYLR_BACSU : 213- 218: iiyas IstGi--G igvii XYLR_BACSU : 213- 220: iiyas IstGigiG viinn XYLR_LACPE : 215- 220: sitls IhrGi--G agiil XYLR_LACPE : 215- 222: sitls IhrGigaG iildk XYLR_STAXY : 210- 215: litls IhkGi--G agiii XYLR_STAXY : 210- 217: litls IhkGigaG iiink XYLR_THER8 : 55- 60: kegfv IekGy--G hskgg XYLR_THER8 : 143- 149: kgilg IgiGvp-G ivekn XYLR_THER8 : 215- 220: yvsvg IgiGa--G ivige XYLR_THER8 : 217- 224: svgig IgaGiviG eevyr YAJF_ECOLI : 15- 21: tktev IalGda-G eqlyr YAJF_ECOLI : 130- 135: vfavi IgtGc--G agvaf YAJF_ECOLI : 130- 137: vfavi IgtGcgaG vafng YAJF_ECOLI : 248- 253: ldpdv IvlGg--G msnvd YAJF_HAEIN : 259- 264: fdphm IvlGg--G lsnfd YHCI_ECOLI : 188- 193: gcvea IasGr--G iaaaa YHCI_HAEIN : 237- 244: ldiqk IaiGgsvG laegy YJCT_ECOLI : 41- 48: rtaev IapGlvsG igemi YNGA_CLOPE : 4- 10: nsr IiwGml-G kgths YNGA_CLOPE : 21- 26: maclt IgtGi--G galii YNGA_CLOPE : 21- 27: maclt IgtGig-G aliid M 13: 11.5102 34( 15) I-x(1,2)-G-x(1,2)-G Occurences: 34(15) GLK_STRCO : 128- 133: rnvic ItlGt-G lgggi GLK_STRCO : 257- 261: dpsaf Iv-Gg-G lsdeg NAGC_ECOLI : 234- 240: isngr IfiGrnG nvgei SCRK_PEDPE : 54- 60: hpvda IgiGsfG pigvn SCRK_PEDPE : 129- 134: siymt IgtGv-G agvis SCRK_STRMU : 131- 136: lvyyt IgtGi-G agaiq SCRK_STRMU : 146- 150: qngef Ig-Gm-G hteag SCRK_STRMU : 231- 236: yrpqv IvfGg-G vmaqe SCRK_ZYMMO : 11- 15: kiygc Ie-Gg-G tkfml SCRK_ZYMMO : 240- 245: isper IvfGg-G vmhvd XYLR_BACSU : 213- 218: iiyas IstGi-G igvii XYLR_LACPE : 141- 146: tqvha Ih-GllG icfsi XYLR_LACPE : 215- 220: sitls IhrGi-G agiil XYLR_STAXY : 210- 215: litls IhkGi-G agiii XYLR_THER8 : 55- 60: kegfv IekGy-G hskgg XYLR_THER8 : 140- 144: ptqkg Il-Gi-G igvpg XYLR_THER8 : 143- 149: kgilg IgiGvpG ivekn XYLR_THER8 : 215- 220: yvsvg IgiGa-G ivige YAJF_ECOLI : 15- 21: tktev IalGdaG eqlyr YAJF_ECOLI : 129- 133: tvfav Ii-Gt-G cgagv YAJF_ECOLI : 130- 135: vfavi IgtGc-G agvaf YAJF_ECOLI : 146- 150: ngrah Ig-Gn-G tagew YAJF_ECOLI : 188- 192: cietf Is-Gt-G famdy YAJF_ECOLI : 248- 253: ldpdv IvlGg-G msnvd YAJF_HAEIN : 138- 142: tvlgl Il-Gt-G fgggf YAJF_HAEIN : 259- 264: fdphm IvlGg-G lsnfd YHCI_ECOLI : 188- 193: gcvea IasGr-G iaaaa YHCI_HAEIN : 150- 155: tgsrg Ia-GhiG htlad YHCI_HAEIN : 165- 169: dpnga Ic-Gc-G rrgcv YHCI_HAEIN : 239- 244: iqkia Ig-GsvG laegy YJCT_ECOLI : 243- 247: dpdav Il-Gg-G vmdmp YNGA_CLOPE : 4- 10: nsr IiwGmlG kgths YNGA_CLOPE : 5- 10: nsri Iw-GmlG kgths YNGA_CLOPE : 21- 26: maclt IgtGi-G galii YNGA_CLOPE : 21- 27: maclt IgtGigG aliid N 14: 11.0102 36( 15) G-x(0,1)-G-x(0,2)-I Occurences: 36(15) GLK_STRCO : 10- 14: igvdi G-GtkI aagvv GLK_STRCO : 133- 138: itlgt GlGggI iignk GLK_STRCO : 135- 138: lgtgl GgG--I iignk GLK_STRCO : 135- 138: lgtgl G-Gg-I iignk GLK_STRCO : 135- 139: lgtgl GgGi-I ignkl GLK_STRCO : 135- 139: lgtgl G-GgiI ignkl GLK_STRCO : 135- 140: lgtgl GgGiiI gnklr GLK_STRCO : 136- 138: gtglg G-G--I iignk GLK_STRCO : 136- 139: gtglg G-Gi-I ignkl GLK_STRCO : 136- 140: gtglg G-GiiI gnklr NAGC_ECOLI : 223- 228: vrvhr GtGagI isngr NAGC_ECOLI : 225- 228: vhrgt GaG--I isngr NAGC_ECOLI : 225- 229: vhrgt GaGi-I sngri SCRK_PEDPE : 134- 138: igtgv GaGv-I sqnhi SCRK_STRMU : 132- 135: vyyti GtG--I gagai SCRK_STRMU : 136- 140: igtgi GaGa-I qngef SCRK_ZYMMO : 145- 150: vgtgf GgGvlI dgkpi SCRK_ZYMMO : 146- 150: gtgfg G-GvlI dgkpi SCRK_ZYMMO : 164- 167: ahpem GhG--I pirhp SCRK_ZYMMO : 164- 169: ahpem GhGipI rhpdd XYLR_BACSU : 143- 146: pygli GiG--I cvpgl XYLR_BACSU : 216- 219: asist GiG--I gviin XYLR_BACSU : 218- 222: istgi GiGv-I innhl XYLR_BACSU : 218- 223: istgi GiGviI nnhly XYLR_LACPE : 218- 223: lsihr GiGagI ildkh XYLR_LACPE : 220- 223: ihrgi GaG--I ildkh XYLR_LACPE : 220- 224: ihrgi GaGi-I ldkhl XYLR_STAXY : 213- 218: lsihk GiGagI iinkk XYLR_STAXY : 215- 218: ihkgi GaG--I iinkk XYLR_STAXY : 215- 219: ihkgi GaGi-I inkkl XYLR_STAXY : 215- 220: ihkgi GaGiiI nkkly XYLR_THER8 : 142- 145: qkgil GiG--I gvpgi XYLR_THER8 : 214- 217: lyvsv GiG--I gagiv XYLR_THER8 : 216- 221: vsvgi GiGagI vigee XYLR_THER8 : 218- 221: vgigi GaG--I vigee XYLR_THER8 : 218- 223: vgigi GaGivI geevy XYLR_THER8 : 320- 323: iankl GiG--I anlvn YAJF_ECOLI : 61- 64: qrgtv GmG--I pgsis YAJF_HAEIN : 17- 21: ygldi G-GtkI elavf YHCI_ECOLI : 191- 194: eaias GrG--I aaaaq YHCI_HAEIN : 9- 13: laldi G-GtkI aaaiv YHCI_HAEIN : 132- 137: itvst GvGggI vlnqi YHCI_HAEIN : 134- 137: vstgv GgG--I vlnqi YHCI_HAEIN : 134- 137: vstgv G-Gg-I vlnqi YHCI_HAEIN : 135- 137: stgvg G-G--I vlnqi YJCT_ECOLI : 48- 53: pglvs GiGemI deqlr YNGA_CLOPE : 22- 25: aclti GtG--I ggali YNGA_CLOPE : 26- 30: igtgi G-GalI idgkv YNGA_CLOPE : 126- 129: evvvl GgG--I maree YNGA_CLOPE : 126- 129: evvvl G-Gg-I maree YNGA_CLOPE : 127- 129: vvvlg G-G--I maree O 15: 11.0102 27( 15) V-x(0,1)-G-x(0,2)-G Occurences: 27(15) GLK_STRCO : 60- 63: heiva V-Gi-G aagyv GLK_STRCO : 258- 260: psafi V-G--G glsde GLK_STRCO : 258- 261: psafi VgG--G lsdeg GLK_STRCO : 258- 261: psafi V-Gg-G lsdeg GLK_STRCO : 282- 284: ykrwl V-G--G nwrpv NAGC_ECOLI : 242- 246: grngn V-GeiG hiqve SCRK_PEDPE : 133- 136: tigtg V-Ga-G visqn SCRK_STRMU : 232- 235: rpqvi VfG--G gvmaq SCRK_STRMU : 232- 236: rpqvi VfGg-G vmaqe SCRK_ZYMMO : 140- 143: svyvt V-Gt-G fgggv SCRK_ZYMMO : 241- 244: speri VfG--G gvmhv SCRK_ZYMMO : 241- 245: speri VfGg-G vmhvd XYLR_BACSU : 231- 236: hlyrg VsGfsG emghm XYLR_LACPE : 69- 71: gaasn V-G--G rkpim XYLR_STAXY : 56- 59: slvne V-Ge-G nstks XYLR_THER8 : 213- 216: llyvs V-Gi-G igagi YAJF_ECOLI : 60- 63: gqrgt V-Gm-G ipgsi YAJF_ECOLI : 249- 252: dpdvi VlG--G gmsnv YAJF_ECOLI : 249- 253: dpdvi VlGg-G msnvd YAJF_ECOLI : 272- 275: likqf VfG--G ecetp YAJF_HAEIN : 66- 70: ekfge V-GtvG lgvpg YAJF_HAEIN : 69- 72: gevgt V-Gl-G vpgfv YAJF_HAEIN : 158- 162: vhsgq V-GmaG elghl YAJF_HAEIN : 260- 263: dphmi VlG--G glsnf YAJF_HAEIN : 260- 264: dphmi VlGg-G lsnfd YHCI_ECOLI : 144- 146: tvstg V-G--G gvvsg YHCI_ECOLI : 144- 147: tvstg VgG--G vvsgc YHCI_ECOLI : 144- 147: tvstg V-Gg-G vvsgc YHCI_ECOLI : 176- 180: dphgp VcGc-G rtgcv YHCI_ECOLI : 249- 252: dcqcv VvG--G svgla YHCI_ECOLI : 250- 252: cqcvv V-G--G svgla YHCI_ECOLI : 250- 255: cqcvv VgGsvG laegy YHCI_HAEIN : 133- 135: tvstg V-G--G givln YHCI_HAEIN : 133- 136: tvstg VgG--G ivlnq YHCI_HAEIN : 133- 136: tvstg V-Gg-G ivlnq YJCT_ECOLI : 46- 50: iapgl VsGi-G emide YJCT_ECOLI : 160- 165: tgahg VaGelG hiplg YNGA_CLOPE : 124- 127: npevv VlG--G gimar YNGA_CLOPE : 124- 128: npevv VlGg-G imare P 16: 11.0102 32( 15) V-x(3,4)-G-x(0,2)-G Occurences: 32(15) GLK_STRCO : 58- 66: vghei VavgiGaaG yvnrq GLK_STRCO : 201- 208: perae VllalGd-G tpdgi NAGC_ECOLI : 218- 225: edsil VrvhrGt-G agiis NAGC_ECOLI : 220- 227: silvr VhrgtGa-G iisng SCRK_PEDPE : 51- 57: ftthp Vdai-Gi-G sfgpi SCRK_PEDPE : 185- 193: aagpa VgkrtGkaG kdipv SCRK_STRMU : 127- 134: nvksl VyytiGt-G igaga SCRK_STRMU : 230- 235: lyrpq Vivf-G--G gvmaq SCRK_STRMU : 230- 236: lyrpq VivfgG--G vmaqe SCRK_STRMU : 230- 236: lyrpq Vivf-Gg-G vmaqe SCRK_ZYMMO : 136- 143: gthts VyvtvGt-G fgggv SCRK_ZYMMO : 138- 145: htsvy VtvgtGf-G ggvli SCRK_ZYMMO : 138- 146: htsvy VtvgtGfgG gvlid SCRK_ZYMMO : 140- 146: svyvt VgtgfG--G gvlid SCRK_ZYMMO : 140- 147: svyvt VgtgfGg-G vlidg XYLR_BACSU : 56- 62: mkenl Vfei-Gq-G qssgg XYLR_BACSU : 231- 239: hlyrg VsgfsGemG hmtid XYLR_LACPE : 138- 146: emqtq VhaihGllG icfsi XYLR_STAXY : 53- 59: khksl Vnev-Ge-G nstks XYLR_THER8 : 54- 60: ikegf Viek-Gy-G hskgg XYLR_THER8 : 211- 218: shlly VsvgiGi-G agivi XYLR_THER8 : 213- 220: llyvs VgigiGa-G ivige XYLR_THER8 : 249- 256: dfndd Vcsc-GnvG clenf YAJF_ECOLI : 14- 21: gtkte Vial-GdaG eqlyr YAJF_ECOLI : 128- 135: qtvfa ViigtGc-G agvaf YAJF_ECOLI : 174- 182: ryree VpcycGkqG cietf YAJF_ECOLI : 247- 252: ildpd Vivl-G--G gmsnv YAJF_ECOLI : 247- 253: ildpd VivlgG--G msnvd YAJF_ECOLI : 247- 253: ildpd Vivl-Gg-G msnvd YAJF_HAEIN : 66- 72: ekfge Vgtv-Gl-G vpgfv YAJF_HAEIN : 158- 165: vhsgq Vgma-GelG hlqln YHCI_ECOLI : 140- 146: mvfit VstgvG--G gvvsg YHCI_ECOLI : 140- 147: mvfit VstgvGg-G vvsgc YHCI_ECOLI : 176- 183: dphgp Vcgc-GrtG cveai YHCI_ECOLI : 248- 255: tdcqc Vvvg-GsvG laegy YHCI_HAEIN : 129- 135: fvfit VstgvG--G givln YHCI_HAEIN : 129- 136: fvfit VstgvGg-G ivlnq YJCT_ECOLI : 242- 247: fdpda Vilg-G--G vmdmp YNGA_CLOPE : 122- 127: linpe Vvvl-G--G gimar YNGA_CLOPE : 122- 128: linpe VvvlgG--G imare YNGA_CLOPE : 122- 128: linpe Vvvl-Gg-G imare YNGA_CLOPE : 123- 128: inpev Vvlg-G--G imare Q 17: 11.0102 16( 15) E-x(3,5)-L-x(0,1)-G Occurences: 16(15) GLK_STRCO : 200- 206: tpera Evlla-L-G dgtpd NAGC_ECOLI : 316- 323: asevi EyvgrhL-G ktiai SCRK_PEDPE : 244- 252: fpmir EkfaayLnG yeevp SCRK_STRMU : 275- 282: tpava EngsatL-G nlala SCRK_ZYMMO : 274- 281: egadf Ekiiv-LpG lgdqa XYLR_BACSU : 355- 362: lgnsy EllpssL-G knapa XYLR_LACPE : 330- 336: sella Etpel-L-G diqdn XYLR_LACPE : 330- 336: sella Etpe--LlG diqdn XYLR_STAXY : 130- 137: ninvs Ekydt-LyG llgis XYLR_THER8 : 188- 195: vyidn EanagaL-G ekwfg YAJF_ECOLI : 13- 18: ggtkt Evia--L-G dageq YAJF_HAEIN : 65- 72: dekfg EvgtvgL-G vpgfv YAJF_HAEIN : 205- 213: sgrgf EmlyqdLkG etlsa YHCI_ECOLI : 124- 130: aaawa Efqa--LdG ditdm YHCI_HAEIN : 38- 45: renvv EgmhqaL-G kllad YJCT_ECOLI : 163- 170: hgvag ElghipL-G dmtqh YNGA_CLOPE : 121- 126: ylinp Evvv--L-G ggima YNGA_CLOPE : 121- 127: ylinp Evvv--LgG gimar R 18: 11.0102 24( 15) G-x(0,2)-E-x(0,1)-G Occurences: 24(15) GLK_STRCO : 212- 215: dgtpd Gi-E-G khisv NAGC_ECOLI : 243- 246: rngnv G--EiG hiqve SCRK_PEDPE : 4- 9: mll GaiEaG gtkfv SCRK_PEDPE : 18- 22: fvcat Ga-EnG qvsdr SCRK_STRMU : 6- 11: mskly GsiEaG gtkfv SCRK_STRMU : 150- 155: figgm GhtEaG hvyma SCRK_STRMU : 179- 183: cpfhk GclE-G laagp SCRK_ZYMMO : 9- 13: dkkiy GciE-G ggtkf SCRK_ZYMMO : 9- 14: dkkiy GciEgG gtkfm SCRK_ZYMMO : 186- 190: cpyhg GcyE-G lasgt XYLR_BACSU : 236- 239: vsgfs G--EmG hmtid XYLR_LACPE : 62- 64: fieel G--E-G aasnv XYLR_LACPE : 235- 238: frgkq G--EaG evgrs XYLR_LACPE : 238- 241: kqgea G--EvG rsltl XYLR_STAXY : 57- 59: lvnev G--E-G nstks XYLR_STAXY : 230- 233: yrgsn G--EaG eigkt XYLR_STAXY : 233- 236: sngea G--EiG ktlvl XYLR_THER8 : 236- 239: akgfa G--EvG hmtid YAJF_ECOLI : 153- 156: gngta G--EwG hnplp YAJF_HAEIN : 64- 67: adekf G--EvG tvglg YAJF_HAEIN : 162- 165: qvgma G--ElG hlqln YHCI_ECOLI : 255- 259: vggsv GlaE-G ylalv YHCI_HAEIN : 244- 248: iggsv GlaE-G ylslv YJCT_ECOLI : 162- 165: ahgva G--ElG hiplg YNGA_CLOPE : 44- 47: fsnsa G--EiG ymmvn S 19: 11.0102 30( 15) G-x(0,2)-L-x(0,1)-G Occurences: 30(15) GLK_STRCO : 131- 135: icitl GtgL-G ggiii GLK_STRCO : 131- 136: icitl GtgLgG giiig GLK_STRCO : 133- 135: itlgt G--L-G ggiii GLK_STRCO : 133- 136: itlgt G--LgG giiig GLK_STRCO : 164- 168: rmvpd Gl-LcG cgsqg GLK_STRCO : 302- 305: lgnka G--LvG aadla NAGC_ECOLI : 90- 94: nfhai GvrL-G rhdat NAGC_ECOLI : 319- 323: vieyv GrhL-G ktiai SCRK_PEDPE : 267- 269: yivpa G--L-G nnsgi SCRK_STRMU : 179- 183: cpfhk Gc-LeG laagp SCRK_ZYMMO : 281- 283: iivlp G--L-G dqagm XYLR_BACSU : 140- 143: pqspy G--LiG igicv XYLR_BACSU : 302- 306: alqnf GfyL-G igltn XYLR_LACPE : 143- 146: vhaih Gl-L-G icfsi XYLR_LACPE : 143- 146: vhaih G--LlG icfsi XYLR_STAXY : 137- 140: ydtly Gl-L-G isisi XYLR_STAXY : 137- 140: ydtly G--LlG isisi XYLR_THER8 : 82- 86: vglii GidL-G vnyih XYLR_THER8 : 139- 142: pptqk Gi-L-G igigv XYLR_THER8 : 192- 195: neana Ga-L-G ekwfg YAJF_ECOLI : 4- 8: mri GidL-G gtkte YAJF_ECOLI : 4- 9: mri GidLgG tktev YAJF_ECOLI : 202- 207: yrrls GhaLkG seiir YAJF_HAEIN : 70- 72: evgtv G--L-G vpgfv YAJF_HAEIN : 136- 140: ystvl GliL-G tgfgg YAJF_HAEIN : 146- 151: tgfgg GfvLnG kvhsg YAJF_HAEIN : 162- 165: qvgma Ge-L-G hlqln YHCI_ECOLI : 159- 163: lltgp Gg-LaG hight YHCI_ECOLI : 160- 163: ltgpg G--LaG hight YHCI_ECOLI : 200- 204: aaaaq Ge-LaG adakt YHCI_ECOLI : 289- 292: yrhda Gl-L-G aalla YHCI_ECOLI : 289- 292: yrhda G--LlG aalla YHCI_HAEIN : 278- 281: fgqda G--LiG aaywv YJCT_ECOLI : 162- 165: ahgva Ge-L-G hiplg YNGA_CLOPE : 7- 10: sriiw Gm-L-G kgths YNGA_CLOPE : 33- 38: aliid GkvLhG fsnsa T 20: 11.0102 35( 15) I-x(1,3)-G-x(3,4)-G Occurences: 35(15) GLK_STRCO : 57- 66: rvghe IvavGigaaG yvnrq GLK_STRCO : 128- 135: rnvic Itl-Gtgl-G ggiii GLK_STRCO : 128- 136: rnvic Itl-GtglgG giiig GLK_STRCO : 257- 266: dpsaf IvggGlsdeG dlvld NAGC_ECOLI : 228- 237: gtgag IisnGrifiG rngnv NAGC_ECOLI : 229- 237: tgagi Isn-GrifiG rngnv NAGC_ECOLI : 315- 323: lasev IeyvGrhl-G ktiai SCRK_PEDPE : 129- 136: siymt Igt-Gvga-G visqn SCRK_PEDPE : 174- 182: cpyhd IcleGlaa-G pavgk SCRK_STRMU : 131- 138: lvyyt Igt-Giga-G aiqng SCRK_STRMU : 135- 143: tigtg Iga-GaiqnG efigg SCRK_STRMU : 140- 147: igaga Iqn-Gefi-G gmght SCRK_STRMU : 140- 148: igaga Iqn-GefigG mghte SCRK_STRMU : 146- 155: qngef IggmGhteaG hvyma SCRK_ZYMMO : 7- 13: kndkk Iy--Gcie-G ggtkf SCRK_ZYMMO : 7- 14: kndkk Iy--GciegG gtkfm SCRK_ZYMMO : 150- 157: gggvl Id--GkpihG lahpe XYLR_BACSU : 59- 66: nlvfe Igq-Gqss-G grrpv XYLR_BACSU : 59- 67: nlvfe Igq-GqssgG rrpvm XYLR_BACSU : 142- 150: spygl Igi-GicvpG lidkn XYLR_BACSU : 213- 220: iiyas Ist-Gigi-G viinn XYLR_LACPE : 215- 222: sitls Ihr-Giga-G iildk XYLR_STAXY : 210- 217: litls Ihk-Giga-G iiink XYLR_THER8 : 80- 86: knvgl Ii--Gidl-G vnyih XYLR_THER8 : 140- 146: ptqkg Il--Gigi-G vpgiv XYLR_THER8 : 140- 149: ptqkg IlgiGigvpG ivekn XYLR_THER8 : 217- 224: svgig Iga-Givi-G eevyr YAJF_ECOLI : 129- 135: tvfav Ii--Gtgc-G agvaf YAJF_ECOLI : 129- 137: tvfav IigtGcga-G vafng YAJF_ECOLI : 130- 137: vfavi Igt-Gcga-G vafng YAJF_ECOLI : 146- 153: ngrah Ig--GngtaG ewghn YAJF_HAEIN : 9- 17: fiqeq ImyyGldi-G gtkie YAJF_HAEIN : 9- 18: fiqeq ImyyGldigG tkiel YAJF_HAEIN : 138- 144: tvlgl Il--Gtgf-G ggfvl YAJF_HAEIN : 138- 146: tvlgl IlgtGfgg-G fvlng YAJF_HAEIN : 138- 145: tvlgl Il--GtgfgG gfvln YHCI_ECOLI : 72- 81: aqrva IastGiirdG sllal YHCI_HAEIN : 165- 172: dpnga Ic--GcgrrG cveai YHCI_HAEIN : 237- 244: ldiqk Iai-Ggsv-G laegy YJCT_ECOLI : 41- 48: rtaev Iap-Glvs-G igemi YNGA_CLOPE : 4- 12: nsr Iiw-GmlgkG thsma YNGA_CLOPE : 5- 12: nsri Iw--GmlgkG thsma YNGA_CLOPE : 30- 38: iggal Iid-GkvlhG fsnsa YNGA_CLOPE : 31- 38: ggali Id--GkvlhG fsnsa Number of patterns evaluated by Pratt:1453 Total running time: 2 seconds