------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file RNA_POL_RPB6_6KD PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RNA_POL_RPB6_6KD.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RPB6_ASFB7 147 RPB6_ASFM2 139 RPB6_HALMA 57 RPB6_HUMAN 127 RPB6_SCHPO 142 RPB6_YEAST 155 Pratt run started at Thu Feb 6 21:11:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.0203 6( 6) E-x(0,1)-A-x(0,1)-R-x(4)-R-A-x-Q 2: 24.0203 6( 6) E-x(2)-R-x(0,1)-L-x(2,3)-R-A-x-Q 3: 16.6802 6( 6) R-x(4)-R-A-x-Q 4: 16.1802 6( 6) P-x(2)-I-A-x(1,2)-E 5: 16.1802 6( 6) L-x(2,3)-R-A-x-Q 6: 16.1802 6( 6) R-x(3,4)-R-A-x-Q 7: 15.6802 6( 6) P-x(2)-I-x(2,3)-E-x(4,5)-I 8: 15.6802 6( 6) G-x(2,3)-A-x(1,2)-Q-x(5)-P 9: 15.6802 6( 6) L-x(1,3)-R-A-x-Q 10: 15.6802 6( 6) R-x(4)-R-A-x(0,2)-L 11: 15.6802 6( 6) A-x(0,1)-R-x(0,1)-L-x(5)-Q 12: 15.1802 6( 6) V-x(4)-E-x(1,2)-T-x(1,3)-L 13: 15.1802 7( 6) A-x(2)-L-x(3,4)-A-x(0,2)-L 14: 15.1802 6( 6) L-x(2,3)-R-A-x(0,2)-L 15: 14.6802 6( 6) P-x(0,2)-I-x(0,2)-A-x(2)-E 16: 12.5102 9( 6) V-x(2)-E-x-E 17: 12.5102 6( 6) R-A-x-Q 18: 12.0102 6( 6) I-A-x(1,2)-E 19: 12.0102 7( 6) T-x(3)-Q-x(0,1)-I 20: 12.0102 7( 6) A-x(1,2)-Q-x(5)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 81.1696 6( 6) E-x(0,1)-A-x(0,1)-R-x-[LV]-[AG]-[ATV]-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] B 2: 75.4071 6( 6) E-x-[AT]-R-x(0,1)-L-x(2,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] C 3: 64.8690 6( 6) R-x(4)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] D 4: 64.3690 6( 6) L-x(2,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] E 5: 64.3690 6( 6) R-x(3,4)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] F 6: 63.8690 6( 6) L-x(1,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] G 7: 63.6842 6( 6) R-x-[LV]-[AG]-[ATV]-R-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] H 8: 60.6989 6( 6) R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] I 9: 60.0778 6( 6) A-x(0,1)-R-x(0,1)-L-[GV]-[AT]-x(2)-[AL]-Q-x(4)-[AN]-[GP]-[SV]-x-[IMV]-x(2)-[EK]-x(2)-[QST]-[DPS]-[IP]-[IL]-x-[AI]-A J 10: 54.2237 6( 6) A-x(2)-L-x(3,4)-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] K 11: 54.2237 6( 6) L-x(2,3)-R-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] L 12: 42.9926 6( 6) P-[ILV]-x-I-x(2,3)-E-x(4,5)-I-[LP]-[IL]-[AILV]-[AIV]-x-[ER]-x(3)-[DGV]-[GTV]-x(3)-[DQT]-x(3)-[ADES] M 13: 38.9405 6( 6) P-[IL]-x-I-A-x(1,2)-E-x(2)-[ADENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R N 14: 34.4895 6( 6) P-x(0,2)-I-x(0,2)-A-x(2)-E-x(2)-[AENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R O 15: 31.4839 6( 6) I-A-x(1,2)-E-x(2)-[ADENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R P 16: 30.5267 6( 6) G-x(2,3)-A-x(1,2)-Q-x(4)-[AI]-P-[DV]-x(2)-[DER]-x-[ET]-x-[ENT] Q 17: 27.1268 6( 6) V-[FLM]-x-[DET]-x-E-x(1,2)-T-x(1,3)-L-x-[AI]-[AV] R 18: 26.8566 6( 6) A-x(1,2)-Q-x(4)-[AI]-P-[DV]-x(2)-[DER]-x-[ET]-x-[ENT] S 19: 20.3271 6( 6) V-x(2)-E-[EGT]-E-x-[DET]-[DPQ] T 20: 12.5102 9( 6) V-x(2)-E-x-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 81.1696 6( 6) E-x(0,1)-A-x(0,1)-R-x-[LV]-[AG]-[ATV]-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 75- 109: vlttf E-AtRlVAVRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 79- 113: vlttf E-AtRlVAVRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 9- 43: qesry EkA-RkLGARAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 61- 95: ymtky ErA-RvLGTRAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 79- 113: ymtky ErA-RiLGTRAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 89- 123: ymtky ErA-RiLGTRAlQISmNAPVFVDlEgETDPlrIamK elaek B 2: 75.4071 6( 6) E-x-[AT]-R-x(0,1)-L-x(2,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 75- 109: vlttf EaTR-LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 79- 113: vlttf EaTR-LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 9- 43: qesry EkARkLga-RAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 61- 95: ymtky ErARvLgt-RAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 79- 113: ymtky ErARiLgt-RAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 89- 123: ymtky ErARiLgt-RAlQISmNAPVFVDlEgETDPlrIamK elaek C 3: 64.8690 6( 6) R-x(4)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 78- 109: tfeat RlvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 82- 113: tfeat RlvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 12- 43: ryeka RklgaRAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 64- 95: kyera RvlgtRAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 82- 113: kyera RilgtRAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 92- 123: kyera RilgtRAlQISmNAPVFVDlEgETDPlrIamK elaek D 4: 64.3690 6( 6) L-x(2,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 79- 109: featr LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 83- 113: featr LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 14- 43: ekark Lga-RAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 66- 95: erarv Lgt-RAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 84- 113: erari Lgt-RAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 94- 123: erari Lgt-RAlQISmNAPVFVDlEgETDPlrIamK elaek E 5: 64.3690 6( 6) R-x(3,4)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 78- 109: tfeat RlvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 82- 113: tfeat RlvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 12- 43: ryeka RklgaRAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 64- 95: kyera RvlgtRAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 82- 113: kyera RilgtRAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 92- 123: kyera RilgtRAlQISmNAPVFVDlEgETDPlrIamK elaek F 6: 63.8690 6( 6) L-x(1,3)-R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 79- 109: featr LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 83- 113: featr LvavRAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 14- 43: ekark Lga-RAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 66- 95: erarv Lgt-RAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 84- 113: erari Lgt-RAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 94- 123: erari Lgt-RAlQISmNAPVFVDlEgETDPlrIamK elaek G 7: 63.6842 6( 6) R-x-[LV]-[AG]-[ATV]-R-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] Occurences: 6(6) RPB6_ASFB7 : 78- 109: tfeat RlVAVRAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_ASFM2 : 82- 113: tfeat RlVAVRAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_HALMA : 12- 41: ryeka RkLGARA--LQLAhGApVliEtEhTqPILiaA eeyda RPB6_HUMAN : 64- 93: kyera RvLGTRA--LQIAmCApVmvElEgEtDPLliA mkelk RPB6_SCHPO : 82- 111: kyera RiLGTRA--LQISmNApVlvDlEgEtDPLqiA mkela RPB6_YEAST : 92- 121: kyera RiLGTRA--LQISmNApVfvDlEgEtDPLriA mkela H 8: 60.6989 6( 6) R-A-x-Q-[IL]-[AS]-x-[CGN]-[AG]-[PS]-[TV]-[FLM]-[ILV]-[DEK]-x-[EK]-x-[EST]-[QST]-[DP]-[IP]-x(2)-[AI]-x(2)-[EK] Occurences: 6(6) RPB6_ASFB7 : 83- 109: rlvav RAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_ASFM2 : 87- 113: rlvav RAqQLAiNGSTMLKkKySSPIdiAkqE lfnrk RPB6_HALMA : 17- 43: rklga RAlQLAhGAPVLIEtEhTQPIliAaeE ydagv RPB6_HUMAN : 69- 95: rvlgt RAlQIAmCAPVMVElEgETDPllIamK elkar RPB6_SCHPO : 87- 113: rilgt RAlQISmNAPVLVDlEgETDPlqIamK elaqk RPB6_YEAST : 97- 123: rilgt RAlQISmNAPVFVDlEgETDPlrIamK elaek I 9: 60.0778 6( 6) A-x(0,1)-R-x(0,1)-L-[GV]-[AT]-x(2)-[AL]-Q-x(4)-[AN]-[GP]-[SV]-x-[IMV]-x(2)-[EK]-x(2)-[QST]-[DPS]-[IP]-[IL]-x-[AI]-A Occurences: 6(6) RPB6_ASFB7 : 76- 106: lttfe AtR-LVAvrAQqlaiNGStMlkKkySSPIdIA kqelf RPB6_ASFM2 : 80- 110: lttfe AtR-LVAvrAQqlaiNGStMlkKkySSPIdIA kqelf RPB6_HALMA : 11- 41: sryek A-RkLGAraLQlahgAPVlIetEhtQPILiAA eeyda RPB6_HUMAN : 63- 93: tkyer A-RvLGTraLQiamcAPVmVelEgeTDPLlIA mkelk RPB6_SCHPO : 81- 111: tkyer A-RiLGTraLQismnAPVlVdlEgeTDPLqIA mkela RPB6_YEAST : 91- 121: tkyer A-RiLGTraLQismnAPVfVdlEgeTDPLrIA mkela J 10: 54.2237 6( 6) A-x(2)-L-x(3,4)-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] Occurences: 6(6) RPB6_ASFB7 : 76- 109: lttfe AtrLvavrAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_ASFM2 : 80- 113: lttfe AtrLvavrAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_HALMA : 11- 41: sryek ArkLgar-A--LQLAhGApVliEtEhTqPILiaA eeyda RPB6_HUMAN : 63- 93: tkyer ArvLgtr-A--LQIAmCApVmvElEgEtDPLliA mkelk RPB6_SCHPO : 81- 111: tkyer AriLgtr-A--LQISmNApVlvDlEgEtDPLqiA mkela RPB6_YEAST : 91- 121: tkyer AriLgtr-A--LQISmNApVfvDlEgEtDPLriA mkela K 11: 54.2237 6( 6) L-x(2,3)-R-A-x(0,2)-L-[AQ]-[IL]-[ANS]-x-[CGNS]-[AT]-x-[LV]-x(2)-[DEK]-x-[ES]-x-[EPT]-x-[DP]-[IP]-[AL]-x(2)-[AE] Occurences: 6(6) RPB6_ASFB7 : 79- 109: featr LvavRAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_ASFM2 : 83- 113: featr LvavRAqqLAINgSTmLkkKySsPiDIAkqE lfnrk RPB6_HALMA : 14- 41: ekark Lga-RA--LQLAhGApVliEtEhTqPILiaA eeyda RPB6_HUMAN : 66- 93: erarv Lgt-RA--LQIAmCApVmvElEgEtDPLliA mkelk RPB6_SCHPO : 84- 111: erari Lgt-RA--LQISmNApVlvDlEgEtDPLqiA mkela RPB6_YEAST : 94- 121: erari Lgt-RA--LQISmNApVfvDlEgEtDPLriA mkela L 12: 42.9926 6( 6) P-[ILV]-x-I-x(2,3)-E-x(4,5)-I-[LP]-[IL]-[AILV]-[AIV]-x-[ER]-x(3)-[DGV]-[GTV]-x(3)-[DQT]-x(3)-[ADES] Occurences: 6(6) RPB6_ASFB7 : 102- 134: kkyss PIdIakqElfnrkIPLLVmRcikVTpegQkivE iwnpr RPB6_ASFM2 : 106- 138: kkyss PIdIakqElfnrkIPLLVmRcikVTpegQkivE i RPB6_HALMA : 26- 56: lahga PVlIet-Ehtqp-ILIAAeEydaGVlpfTvnrS d RPB6_HUMAN : 89- 121: egetd PLlIamkElkarkIPIIIrRylpDGsyeDwgvD eliit RPB6_SCHPO : 107- 139: egetd PLqIamkElaqkkIPLLVrRylpDGsyeDwsvA eli RPB6_YEAST : 117- 149: egetd PLrIamkElaekkIPLVIrRylpDGsfeDwsvE elivd M 13: 38.9405 6( 6) P-[IL]-x-I-A-x(1,2)-E-x(2)-[ADENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R Occurences: 6(6) RPB6_ASFB7 : 102- 121: kkyss PIdIAkqElfNrkIPLlVmR cikvt RPB6_ASFM2 : 106- 125: kkyss PIdIAkqElfNrkIPLlVmR cikvt RPB6_HALMA : 36- 55: tehtq PIlIAaeEydAgvLPFtVnR sd RPB6_HUMAN : 89- 108: egetd PLlIAmkElkArkIPIiIrR ylpdg RPB6_SCHPO : 107- 126: egetd PLqIAmkElaQkkIPLlVrR ylpdg RPB6_YEAST : 117- 136: egetd PLrIAmkElaEkkIPLvIrR ylpdg N 14: 34.4895 6( 6) P-x(0,2)-I-x(0,2)-A-x(2)-E-x(2)-[AENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R Occurences: 6(6) RPB6_ASFB7 : 102- 121: kkyss PidI--AkqElfNrkIPLlVmR cikvt RPB6_ASFB7 : 102- 121: kkyss P--IdiAkqElfNrkIPLlVmR cikvt RPB6_ASFM2 : 106- 125: kkyss PidI--AkqElfNrkIPLlVmR cikvt RPB6_ASFM2 : 106- 125: kkyss P--IdiAkqElfNrkIPLlVmR cikvt RPB6_HALMA : 36- 55: tehtq PilI--AaeEydAgvLPFtVnR sd RPB6_HALMA : 36- 55: tehtq P--IliAaeEydAgvLPFtVnR sd RPB6_HUMAN : 89- 108: egetd PllI--AmkElkArkIPIiIrR ylpdg RPB6_SCHPO : 107- 126: egetd PlqI--AmkElaQkkIPLlVrR ylpdg RPB6_YEAST : 117- 136: egetd PlrI--AmkElaEkkIPLvIrR ylpdg O 15: 31.4839 6( 6) I-A-x(1,2)-E-x(2)-[ADENQ]-x(2)-[IL]-P-[FIL]-x-[IV]-x-R Occurences: 6(6) RPB6_ASFB7 : 105- 121: sspid IAkqElfNrkIPLlVmR cikvt RPB6_ASFM2 : 109- 125: sspid IAkqElfNrkIPLlVmR cikvt RPB6_HALMA : 39- 55: tqpil IAaeEydAgvLPFtVnR sd RPB6_HUMAN : 92- 108: tdpll IAmkElkArkIPIiIrR ylpdg RPB6_SCHPO : 110- 126: tdplq IAmkElaQkkIPLlVrR ylpdg RPB6_YEAST : 120- 136: tdplr IAmkElaEkkIPLvIrR ylpdg P 16: 30.5267 6( 6) G-x(2,3)-A-x(1,2)-Q-x(4)-[AI]-P-[DV]-x(2)-[DER]-x-[ET]-x-[ENT] Occurences: 6(6) RPB6_ASFB7 : 48- 69: psice GfvqAssQtlviIPDneRiTsN vlttf RPB6_ASFM2 : 52- 73: psice GfvqAssQtlviIPDneRiTsN vlttf RPB6_HALMA : 15- 34: karkl Gar-Al-QlahgAPVliEtEhT qpili RPB6_HUMAN : 67- 86: rarvl Gtr-Al-QiamcAPVmvElEgE tdpll RPB6_SCHPO : 85- 104: raril Gtr-Al-QismnAPVlvDlEgE tdplq RPB6_YEAST : 95- 114: raril Gtr-Al-QismnAPVfvDlEgE tdplr Q 17: 27.1268 6( 6) V-[FLM]-x-[DET]-x-E-x(1,2)-T-x(1,3)-L-x-[AI]-[AV] Occurences: 6(6) RPB6_ASFB7 : 70- 82: ritsn VLtTfEa-Tr--LvAV raqql RPB6_ASFM2 : 74- 86: ritsn VLtTfEa-Tr--LvAV raqql RPB6_HALMA : 27- 41: ahgap VLiEtEh-TqpiLiAA eeyda RPB6_HUMAN : 79- 93: amcap VMvElEgeTdp-LlIA mkelk RPB6_SCHPO : 97- 111: smnap VLvDlEgeTdp-LqIA mkela RPB6_YEAST : 107- 121: smnap VFvDlEgeTdp-LrIA mkela R 18: 26.8566 6( 6) A-x(1,2)-Q-x(4)-[AI]-P-[DV]-x(2)-[DER]-x-[ET]-x-[ENT] Occurences: 6(6) RPB6_ASFB7 : 52- 69: egfvq AssQtlviIPDneRiTsN vlttf RPB6_ASFM2 : 56- 73: egfvq AssQtlviIPDneRiTsN vlttf RPB6_HALMA : 18- 34: klgar Al-QlahgAPVliEtEhT qpili RPB6_HUMAN : 70- 86: vlgtr Al-QiamcAPVmvElEgE tdpll RPB6_SCHPO : 88- 104: ilgtr Al-QismnAPVlvDlEgE tdplq RPB6_YEAST : 98- 114: ilgtr Al-QismnAPVfvDlEgE tdplr S 19: 20.3271 6( 6) V-x(2)-E-[EGT]-E-x-[DET]-[DPQ] Occurences: 6(6) RPB6_ASFB7 : 27- 35: eeenf VdsEEEsED kdeiv RPB6_ASFM2 : 27- 35: eeenf VdsEEEsED ksedk RPB6_HALMA : 27- 35: ahgap VliETEhTQ pilia RPB6_HUMAN : 81- 89: capvm VelEGEtDP lliam RPB6_SCHPO : 99- 107: napvl VdlEGEtDP lqiam RPB6_YEAST : 109- 117: napvf VdlEGEtDP lriam T 20: 12.5102 9( 6) V-x(2)-E-x-E Occurences: 9(6) RPB6_ASFB7 : 19- 24: lveey VetEeE nfvds RPB6_ASFB7 : 27- 32: eeenf VdsEeE sedkd RPB6_ASFM2 : 19- 24: lveey VetEeE nfvds RPB6_ASFM2 : 27- 32: eeenf VdsEeE sedks RPB6_HALMA : 27- 32: ahgap VliEtE htqpi RPB6_HUMAN : 79- 84: amcap VmvElE getdp RPB6_HUMAN : 81- 86: capvm VelEgE tdpll RPB6_SCHPO : 99- 104: napvl VdlEgE tdplq RPB6_YEAST : 109- 114: napvf VdlEgE tdplr Number of patterns evaluated by Pratt:519 Total running time: 0 seconds