------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file RNA_POL_PHAGE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RNA_POL_PHAGE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RPOL_BPK11 906 RPOL_BPSP6 874 RPOL_BPT3 884 RPOL_BPT7 883 RPOM_NEUCR 1422 RPOM_YEAST 1351 RPOP_AGABT 1102 RPOP_CLAPU 936 RPOP_MAIZE 1098 RPOP_NEUCR 896 RPOP_NEUIN 811 Pratt run started at Thu Feb 6 21:08:42 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 11( 11) R-x(3)-K-x(3)-M-x(3)-Y 2: 16.1802 11( 11) K-x(3)-M-T-x(2,3)-Y 3: 15.6802 11( 11) P-x(3)-H-x(2)-D-x(1,3)-S 4: 15.6802 13( 11) K-x(2,3)-M-T-x(2,3)-Y 5: 15.6802 11( 11) P-x(3,4)-D-x(3,4)-G-x-Q 6: 15.1802 13( 11) A-x(2,4)-L-L-x(0,1)-S 7: 14.6802 12( 11) E-x-L-x(0,2)-K-x(3,5)-I 8: 12.5102 13( 11) I-x(3)-N-x(4)-D 9: 12.5102 11( 11) N-x(2)-H-x(2)-D 10: 12.5102 17( 11) L-x(3)-L-E 11: 12.5102 15( 11) N-x(4)-D-K 12: 12.5102 17( 11) L-x-K-A 13: 12.0102 19( 11) L-x(0,1)-P-x(4)-L 14: 12.0102 29( 11) L-x(2,3)-L-x(5)-L 15: 12.0102 14( 11) P-x(3,4)-L-x(4)-E 16: 12.0102 14( 11) P-x(3,4)-L-x(5)-L 17: 12.0102 17( 11) L-x-L-x(2,3)-L 18: 12.0102 28( 11) L-x(3,4)-L-x(5)-L 19: 12.0102 32( 11) K-x(2)-E-x(1,2)-L 20: 12.0102 36( 11) K-x(2,3)-E-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 25.3836 11( 11) R-x(3)-K-x(2)-[FILV]-M-[PT]-x(2)-Y-[GN] B 2: 24.6180 11( 11) P-x(3,4)-D-x(3,4)-G-x-Q-x(2)-[ASV]-[AL]-x(3)-[DE] C 3: 24.2665 11( 11) N-[FIL]-[IV]-H-[GQS]-x-D-[AG] D 4: 23.3324 11( 11) P-x(2)-[FIV]-H-[EGS]-x-D-x(1,3)-S-x-[ILMV] E 5: 23.1271 11( 11) R-x(3)-K-x(3)-M-[PT]-x(2)-Y-[GN] F 6: 18.8502 11( 11) K-x(3)-M-T-x(2,3)-Y-[EGN] G 7: 18.3502 13( 11) K-x(2,3)-M-T-x(2,3)-Y-[EGN] H 8: 15.1865 11( 11) I-x(3)-N-x(2)-[GIL]-x-D I 9: 15.1802 13( 11) A-x(2,4)-L-L-x(0,1)-S J 10: 14.6802 12( 11) E-x-L-x(0,2)-K-x(3,5)-I K 11: 13.4499 18( 11) L-x(2,3)-L-x(5)-L-x-[ADEGNQT] L 12: 12.5102 17( 11) L-x(3)-L-E M 13: 12.5102 15( 11) N-x(4)-D-K N 14: 12.5102 17( 11) L-x-K-A O 15: 12.0102 19( 11) L-x(0,1)-P-x(4)-L P 16: 12.0102 14( 11) P-x(3,4)-L-x(4)-E Q 17: 12.0102 14( 11) P-x(3,4)-L-x(5)-L R 18: 12.0102 17( 11) L-x-L-x(2,3)-L S 19: 12.0102 28( 11) L-x(3,4)-L-x(5)-L T 20: 12.0102 32( 11) K-x(2)-E-x(1,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 25.3836 11( 11) R-x(3)-K-x(2)-[FILV]-M-[PT]-x(2)-Y-[GN] Occurences: 11(11) RPOL_BPK11 : 650- 663: qygvt RkvtKrsVMTlaYG skesl RPOL_BPSP6 : 619- 632: sigit RsltKkpVMTlpYG strlt RPOL_BPT3 : 628- 641: aygvt RsvtKrsVMTlaYG skefg RPOL_BPT7 : 627- 640: aygvt RsvtKrsVMTlaYG skefg RPOM_NEUCR : 965- 978: hgkit RkvvKqtVMTnvYG vtyvg RPOM_YEAST : 1010- 1023: kdkit RkvvKqtVMTnvYG vtyvg RPOP_AGABT : 800- 813: dikln RkiiKrsVMTipYN ismag RPOP_CLAPU : 650- 663: nlgls RaniKqaIMTkpYN akdft RPOP_MAIZE : 746- 759: vsifd RnvvKkmFMPmmYG ktdyt RPOP_NEUCR : 613- 626: rinve RclvKrgLMTitYG aterg RPOP_NEUIN : 536- 549: disln RsllKkvIMTksYN vttyg B 2: 24.6180 11( 11) P-x(3,4)-D-x(3,4)-G-x-Q-x(2)-[ASV]-[AL]-x(3)-[DE] Occurences: 11(11) RPOL_BPK11 : 556- 575: yncsl Plaf-DgscsGiQhfSAmlrD siggr RPOL_BPSP6 : 532- 551: frthl Pvhq-DgscsGiQhySAmlrD evgak RPOL_BPT3 : 534- 553: yncsl Plaf-DgscsGiQhfSAmlrD evggr RPOL_BPT7 : 533- 552: yncsl Plaf-DgscsGiQhfSAmlrD evggr RPOM_NEUCR : 896- 915: yvshl Pihq-DgtcnGlQhyAAlggD twgaq RPOM_YEAST : 941- 960: fishq Pvhq-DgtcnGlQhyAAlggD vegat RPOP_AGABT : 730- 749: anisn Pilf-DascsGiQhiAAltlE kelas RPOP_CLAPU : 572- 591: fktyl Plql-DgtcnGfQhiVLlsnE vklys RPOP_MAIZE : 1072- 1091: efasd PvwssDntn-GtQadSLdkgE ddyci RPOP_NEUCR : 542- 561: fishl Pilm-DatcnGlQhlSAmvnD fvlae RPOP_NEUIN : 466- 485: ypvfn Pifl-DatcsGvQhfAAmllD lelgk C 3: 24.2665 11( 11) N-[FIL]-[IV]-H-[GQS]-x-D-[AG] Occurences: 11(11) RPOL_BPK11 : 804- 811: sgiap NFVHSqDG shlrm RPOL_BPSP6 : 776- 783: gaaap NFVHGhDA shlil RPOL_BPT3 : 782- 789: sgiap NFVHSqDG shlrm RPOL_BPT7 : 781- 788: sgiap NFVHSqDG shlrk RPOM_NEUCR : 1150- 1157: qafpp NFIHSlDA shmil RPOM_YEAST : 1160- 1167: aglpp NFIHSlDA shmll RPOP_AGABT : 951- 958: rsfmp NFIHSlDA snvhl RPOP_CLAPU : 806- 813: ialmp NLIHSlDA aslim RPOP_MAIZE : 882- 889: tstfa NFIHQkDA ftaiq RPOP_NEUCR : 767- 774: qafip NFVHSmDG snivl RPOP_NEUIN : 692- 699: qaiip NIIHSlDA shltm D 4: 23.3324 11( 11) P-x(2)-[FIV]-H-[EGS]-x-D-x(1,3)-S-x-[ILMV] Occurences: 11(11) RPOL_BPK11 : 803- 814: esgia PnfVHSqDg--ShL rmtvv RPOL_BPSP6 : 775- 786: mgaaa PnfVHGhDa--ShL iltvc RPOL_BPT3 : 781- 792: esgia PnfVHSqDg--ShL rmtvv RPOL_BPT7 : 780- 791: esgia PnfVHSqDg--ShL rktvv RPOM_NEUCR : 1149- 1160: lqafp PnfIHSlDa--ShM ilsal RPOM_YEAST : 1159- 1170: kaglp PnfIHSlDa--ShM llsaa RPOP_AGABT : 950- 961: krsfm PnfIHSlDa--SnV hllln RPOP_CLAPU : 805- 817: qialm PnlIHSlDaa-SlI mlyfa RPOP_MAIZE : 546- 559: nyrhg PfhFHErDlvrSlI ifdes RPOP_NEUCR : 766- 777: iqafi PnfVHSmDg--SnI vllin RPOP_NEUIN : 691- 702: vqaii PniIHSlDa--ShL tmiid E 5: 23.1271 11( 11) R-x(3)-K-x(3)-M-[PT]-x(2)-Y-[GN] Occurences: 11(11) RPOL_BPK11 : 650- 663: qygvt RkvtKrsvMTlaYG skesl RPOL_BPSP6 : 619- 632: sigit RsltKkpvMTlpYG strlt RPOL_BPT3 : 628- 641: aygvt RsvtKrsvMTlaYG skefg RPOL_BPT7 : 627- 640: aygvt RsvtKrsvMTlaYG skefg RPOM_NEUCR : 965- 978: hgkit RkvvKqtvMTnvYG vtyvg RPOM_YEAST : 1010- 1023: kdkit RkvvKqtvMTnvYG vtyvg RPOP_AGABT : 800- 813: dikln RkiiKrsvMTipYN ismag RPOP_CLAPU : 650- 663: nlgls RaniKqaiMTkpYN akdft RPOP_MAIZE : 746- 759: vsifd RnvvKkmfMPmmYG ktdyt RPOP_NEUCR : 613- 626: rinve RclvKrglMTitYG aterg RPOP_NEUIN : 536- 549: disln RsllKkviMTksYN vttyg F 6: 18.8502 11( 11) K-x(3)-M-T-x(2,3)-Y-[EGN] Occurences: 11(11) RPOL_BPK11 : 654- 663: trkvt KrsvMTla-YG skesl RPOL_BPSP6 : 623- 632: trslt KkpvMTlp-YG strlt RPOL_BPT3 : 632- 641: trsvt KrsvMTla-YG skefg RPOL_BPT7 : 631- 640: trsvt KrsvMTla-YG skefg RPOM_NEUCR : 969- 978: trkvv KqtvMTnv-YG vtyvg RPOM_YEAST : 1014- 1023: trkvv KqtvMTnv-YG vtyvg RPOP_AGABT : 804- 813: nrkii KrsvMTip-YN ismag RPOP_CLAPU : 654- 663: srani KqaiMTkp-YN akdft RPOP_MAIZE : 137- 147: kgiqt KierMTmyfYE anvye RPOP_NEUCR : 617- 626: erclv KrglMTit-YG aterg RPOP_NEUIN : 540- 549: nrsll KkviMTks-YN vttyg G 7: 18.3502 13( 11) K-x(2,3)-M-T-x(2,3)-Y-[EGN] Occurences: 13(11) RPOL_BPK11 : 654- 663: trkvt KrsvMTla-YG skesl RPOL_BPSP6 : 623- 632: trslt KkpvMTlp-YG strlt RPOL_BPSP6 : 624- 632: rsltk Kpv-MTlp-YG strlt RPOL_BPT3 : 632- 641: trsvt KrsvMTla-YG skefg RPOL_BPT7 : 631- 640: trsvt KrsvMTla-YG skefg RPOM_NEUCR : 969- 978: trkvv KqtvMTnv-YG vtyvg RPOM_YEAST : 1014- 1023: trkvv KqtvMTnv-YG vtyvg RPOP_AGABT : 804- 813: nrkii KrsvMTip-YN ismag RPOP_CLAPU : 654- 663: srani KqaiMTkp-YN akdft RPOP_MAIZE : 137- 147: kgiqt KierMTmyfYE anvye RPOP_NEUCR : 617- 626: erclv KrglMTit-YG aterg RPOP_NEUIN : 540- 549: nrsll KkviMTks-YN vttyg RPOP_NEUIN : 541- 549: rsllk Kvi-MTks-YN vttyg H 8: 15.1865 11( 11) I-x(3)-N-x(2)-[GIL]-x-D Occurences: 11(11) RPOL_BPK11 : 485- 494: fywlk IhgaNcaGvD kvpfp RPOL_BPSP6 : 454- 463: lkwfc IngaNlwGwD kktfd RPOL_BPT3 : 463- 472: fywlk IhgaNcaGvD kvpfp RPOL_BPT7 : 462- 471: yywlk IhgaNcaGvD kvsfp RPOM_NEUCR : 1188- 1197: thasd IdsmNavLrD afiri RPOM_YEAST : 867- 876: lkwlk IhlsNlfGfD klplk RPOP_AGABT : 253- 262: kvike IldsNliIeD kqlai RPOP_CLAPU : 552- 561: aycle IerlNqfLnD dsien RPOP_MAIZE : 982- 991: ldrmm IdlqNplIpD fgsvd RPOP_NEUCR : 476- 485: lkalk IytaNafGlD krske RPOP_NEUIN : 764- 773: lkdyk IeivNknGeD fvkik I 9: 15.1802 13( 11) A-x(2,4)-L-L-x(0,1)-S Occurences: 13(11) RPOL_BPK11 : 272- 278: vqlap Afve-LL-S kraga RPOL_BPK11 : 581- 587: siggr Avn--LLpS dtvqd RPOL_BPSP6 : 40- 47: sesdt AwnrrLL-S eliap RPOL_BPT3 : 559- 565: evggr Avn--LLpS etvqd RPOL_BPT7 : 558- 564: evggr Avn--LLpS etvqd RPOM_NEUCR : 40- 47: irgsl AatprLL-S tittq RPOM_NEUCR : 41- 47: rgsla Atpr-LL-S tittq RPOM_YEAST : 1167- 1173: ihsld Ashm-LL-S aaecg RPOP_AGABT : 169- 174: lnnni Aev--LL-S iknkv RPOP_CLAPU : 845- 853: cygvt AkyidLLiS qlrav RPOP_MAIZE : 477- 482: fkrke Alr--LL-S sllfk RPOP_MAIZE : 477- 483: fkrke Alr--LLsS llfkh RPOP_NEUCR : 565- 573: ndfvl AekvnLLkS tendn RPOP_NEUIN : 138- 145: kfifi Awsy-LLaS yskss J 10: 14.6802 12( 11) E-x-L-x(0,2)-K-x(3,5)-I Occurences: 12(11) RPOL_BPK11 : 740- 748: dkktk EvLr-Krca--I hwvtp RPOL_BPSP6 : 447- 454: pvngv EaL--Kwfc--I nganl RPOL_BPT3 : 581- 588: aqkvn EiL--Kqda--I ngtpn RPOL_BPT7 : 358- 367: paier EeLpmKped--I dmnpe RPOM_NEUCR : 1297- 1304: dltvp EdL--Kevt--I gnlag RPOM_YEAST : 323- 333: fhgst EvLs-KdaeklI avdti RPOP_AGABT : 672- 680: klpws ErLt-Kvdg--I ikeyl RPOP_AGABT : 672- 681: klpws ErLt-Kvdgi-I keyle RPOP_AGABT : 993- 1001: nmfkl EkLv-Knaf--I niyfn RPOP_AGABT : 993- 1003: nmfkl EkLv-KnafinI yfnde RPOP_CLAPU : 926- 935: irkay EeLa-Kanmf-I k RPOP_MAIZE : 129- 138: tnqta EeL--KgiqtkI ermtm RPOP_NEUCR : 129- 136: klpgv EyL--Kpsl--I isivl RPOP_NEUCR : 129- 137: klpgv EyL--Kpsli-I sivlg RPOP_NEUIN : 757- 764: dykfr EnL--Kdyk--I eivnk RPOP_NEUIN : 757- 766: dykfr EnL--KdykieI vnkng K 11: 13.4499 18( 11) L-x(2,3)-L-x(5)-L-x-[ADEGNQT] Occurences: 18(11) RPOL_BPK11 : 236- 248: hvgtk LlelLiegtgLvE mtknk RPOL_BPK11 : 237- 248: vgtkl Lel-LiegtgLvE mtknk RPOL_BPSP6 : 723- 735: krneg LmytLptgfiLeQ kimat RPOL_BPT3 : 217- 229: hvgir LiemLiestgLvE lqrhn RPOL_BPT7 : 398- 410: lavsa LsscLskpisLlT irpsg RPOM_NEUCR : 232- 243: yvtry Lsl-LptqiaLeT vfnte RPOM_YEAST : 1255- 1267: rirkd LsrkLgrsttLaD eiyfe RPOP_AGABT : 223- 234: eiksi Lke-LnkmeiLdN rinkl RPOP_AGABT : 402- 413: denps Lna-LypinkLkD eiskl RPOP_AGABT : 748- 760: iaalt LekeLasnvnLyT dssnp RPOP_AGABT : 869- 881: iiyfv LtkeLpslrlLsN yfesm RPOP_CLAPU : 84- 95: fifah Lqe-LlqnkpLnA dlqve RPOP_CLAPU : 746- 758: iseim LklnLpitwsLpT glevh RPOP_MAIZE : 481- 493: ealrl LsslLfkheeLsT iyrys RPOP_NEUCR : 269- 280: ipknk Lkt-LinnitLmD tielp RPOP_NEUCR : 519- 530: eadep Llf-LacaleLkG ynedp RPOP_NEUIN : 378- 389: elsla Lin-LfegkkLdE kglff RPOP_NEUIN : 484- 496: faaml LdleLgkyvnLiN sgesv L 12: 12.5102 17( 11) L-x(3)-L-E Occurences: 17(11) RPOL_BPK11 : 161- 166: avssq LgkaLE dearf RPOL_BPK11 : 895- 900: kgdln LrdiLE sdfaf RPOL_BPSP6 : 186- 191: qigtt LleiLE gsvfy RPOL_BPSP6 : 836- 841: idgna LqklLE ehevr RPOL_BPT3 : 399- 404: srris LefmLE qankf RPOL_BPT7 : 872- 877: kgnln LrdiLE sdfaf RPOM_NEUCR : 879- 884: atcfe LaaaLE ledpt RPOM_YEAST : 114- 119: rdvmq LwslLE aclqs RPOM_YEAST : 174- 179: kmnek LtndLE tsfkd RPOP_AGABT : 567- 572: kgynm LkpiLE tdske RPOP_CLAPU : 15- 20: vsnpc LtnlLE nktgt RPOP_CLAPU : 380- 385: inkkl LkylLE dyvfs RPOP_CLAPU : 546- 551: nkfmf LaycLE ierln RPOP_CLAPU : 756- 761: pitws LptgLE vhqqy RPOP_MAIZE : 173- 178: takdy LldkLE kpddl RPOP_NEUCR : 522- 527: epllf LacaLE lkgyn RPOP_NEUIN : 559- 564: giteq LkskLE vkeki M 13: 12.5102 15( 11) N-x(4)-D-K Occurences: 15(11) RPOL_BPK11 : 489- 495: kihga NcagvDK vpfpe RPOL_BPSP6 : 458- 464: cinga NlwgwDK ktfdv RPOL_BPT3 : 467- 473: kihga NcagvDK vpfpe RPOL_BPT7 : 466- 472: kihga NcagvDK vsfpe RPOM_NEUCR : 826- 832: kvhla NvygfDK aslqe RPOM_YEAST : 871- 877: kihls NlfgfDK lplkd RPOM_YEAST : 968- 974: gatqv NlvpsDK pqdvy RPOP_AGABT : 257- 263: eilds NliieDK qlaie RPOP_AGABT : 661- 667: nvyla NlagyDK lpwse RPOP_CLAPU : 131- 137: vnstm NnicfDK aeimk RPOP_CLAPU : 201- 207: vvtya NiytdDK lhtga RPOP_MAIZE : 207- 213: lskqf NvfalDK asvqv RPOP_MAIZE : 258- 264: inede NillqDK gvdtf RPOP_NEUCR : 480- 486: kiyta NafglDK rskee RPOP_NEUIN : 427- 433: venld NiiamDK efilk N 14: 12.5102 17( 11) L-x-K-A Occurences: 17(11) RPOL_BPK11 : 161- 164: avssq LgKA ledea RPOL_BPK11 : 847- 850: adagn LfKA vretm RPOL_BPSP6 : 430- 433: pqsnd LgKA llrft RPOL_BPT3 : 142- 145: aaagm LgKA iedea RPOL_BPT3 : 388- 391: agiyr LdKA rvsrr RPOL_BPT3 : 825- 828: adagk LfKA vretm RPOL_BPT7 : 824- 827: adaan LfKA vretm RPOM_NEUCR : 211- 214: etval LlKA sltst RPOM_NEUCR : 504- 507: iskrn LrKA kskqh RPOM_YEAST : 294- 297: endsk LhKA snass RPOP_AGABT : 300- 303: niypk LnKA ytell RPOP_CLAPU : 152- 155: klkks LnKA sglnk RPOP_CLAPU : 472- 475: yqsse LaKA lllfa RPOP_CLAPU : 928- 931: kayee LaKA nmfik RPOP_MAIZE : 211- 214: fnvfa LdKA svqva RPOP_NEUCR : 747- 750: ryklv LrKA dttsi RPOP_NEUIN : 65- 68: ehkkd LhKA qeiie O 15: 12.0102 19( 11) L-x(0,1)-P-x(4)-L Occurences: 19(11) RPOL_BPK11 : 269- 276: mqmvq LaPafveL lskra RPOL_BPSP6 : 423- 430: vqsst LsPqsndL gkall RPOL_BPSP6 : 727- 733: glmyt L-PtgfiL eqkim RPOL_BPT3 : 758- 765: lgqfr LqPtintL kdsgi RPOL_BPT3 : 865- 871: dkmpp L-PkkgnL nlqdi RPOL_BPT7 : 864- 870: dkmpa L-PakgnL nlrdi RPOM_NEUCR : 234- 241: tryls LlPtqiaL etvfn RPOM_NEUCR : 235- 241: rylsl L-PtqiaL etvfn RPOM_NEUCR : 1247- 1254: rvrnk LgPrkelL leker RPOM_YEAST : 2- 9: m LrPayksL vktsl RPOM_YEAST : 833- 840: grayp LsPhfnhL gndms RPOP_AGABT : 668- 674: agydk L-PwserL tkvdg RPOP_AGABT : 873- 879: vltke L-PslrlL snyfe RPOP_CLAPU : 33- 40: glnfp LkParlaL hgmgv RPOP_CLAPU : 750- 756: mlkln L-PitwsL ptgle RPOP_MAIZE : 351- 357: fdikd L-PfcstL pmvyp RPOP_MAIZE : 464- 471: vsvgl LrPknlaL fkrke RPOP_NEUCR : 125- 131: grtnk L-PgveyL kpsli RPOP_NEUIN : 791- 797: lplpv L-PqmgeL nvedi P 16: 12.0102 14( 11) P-x(3,4)-L-x(4)-E Occurences: 14(11) RPOL_BPK11 : 531- 540: tqqds Pfcf-LafcfE yagvk RPOL_BPSP6 : 502- 511: akada Pyef-LawcfE yaqyl RPOL_BPT3 : 509- 518: aeqds Pfcf-LafcfE yagvt RPOL_BPT7 : 508- 517: aeqds Pfcf-LafcfE yagvq RPOM_NEUCR : 869- 878: lqaed Pwqc-LatcfE laaal RPOM_NEUCR : 1249- 1258: rnklg Prke-LllekE rqell RPOM_YEAST : 914- 923: ttadk Pwqa-LatcfE lnevm RPOP_AGABT : 874- 884: ltkel PslrlLsnyfE smidi RPOP_CLAPU : 92- 102: llqnk PlnadLqveiE tfldn RPOP_CLAPU : 751- 761: lklnl PitwsLptglE vhqqy RPOP_MAIZE : 466- 476: vgllr PknlaLfkrkE alrll RPOP_MAIZE : 963- 973: iqneh PqnkhLfsveE rsmld RPOP_NEUCR : 518- 527: reade Pllf-LacalE lkgyn RPOP_NEUIN : 787- 796: ryeyl Plpv-LpqmgE lnved Q 17: 12.0102 14( 11) P-x(3,4)-L-x(5)-L Occurences: 14(11) RPOL_BPK11 : 888- 899: kmpav PakgdLnlrdiL esdfa RPOL_BPSP6 : 175- 186: rweaw PketqLqigttL leile RPOL_BPT3 : 866- 877: kmppl PkkgnLnlqdiL ksdfa RPOL_BPT7 : 865- 876: kmpal PakgnLnlrdiL esdfa RPOM_NEUCR : 869- 879: lqaed Pwqc-LatcfeL aaale RPOM_YEAST : 4- 15: mlr PayksLvktslL qrrli RPOM_YEAST : 163- 174: fsknd PnfpiLkmnekL tndle RPOM_YEAST : 914- 924: ttadk Pwqa-LatcfeL nevmk RPOP_AGABT : 400- 411: klden PslnaLypinkL kdeis RPOP_CLAPU : 776- 786: lkktk Pyty-LdtsltL kitdk RPOP_MAIZE : 1008- 1019: ksivi PkdllLkcfscL wmskt RPOP_NEUCR : 518- 528: reade Pllf-LacaleL kgyne RPOP_NEUIN : 643- 654: lswst PdgleLtqrynL skvkk RPOP_NEUIN : 787- 797: ryeyl Plpv-LpqmgeL nvedi R 18: 12.0102 17( 11) L-x-L-x(2,3)-L Occurences: 17(11) RPOL_BPK11 : 75- 81: akplv LtLhpqL tkrid RPOL_BPK11 : 770- 775: qnqar LkLvf-L gqanv RPOL_BPK11 : 893- 899: pakgd LnLrdiL esdfa RPOL_BPSP6 : 816- 822: hadnt LtLrvaL kgqmv RPOL_BPT3 : 871- 877: pkkgn LnLqdiL ksdfa RPOL_BPT7 : 747- 752: piqtr LnLmf-L gqfrl RPOL_BPT7 : 870- 876: pakgn LnLrdiL esdfa RPOM_NEUCR : 210- 216: getva LlLkasL tstdp RPOM_YEAST : 514- 519: cviti LeLlk-L nstgg RPOP_AGABT : 746- 752: qhiaa LtLekeL asnvn RPOP_CLAPU : 188- 194: gvvvg LmLyifL lvvty RPOP_CLAPU : 261- 267: ddafy LhLgakL ieili RPOP_MAIZE : 478- 484: krkea LrLlssL lfkhe RPOP_NEUCR : 520- 526: adepl LfLacaL elkgy RPOP_NEUIN : 376- 381: gsels LaLin-L fegkk RPOP_NEUIN : 632- 638: lakiy LkLdipL swstp RPOP_NEUIN : 786- 791: kryey LpLpv-L pqmge S 19: 12.0102 28( 11) L-x(3,4)-L-x(5)-L Occurences: 28(11) RPOL_BPK11 : 236- 246: hvgtk Llel-LiegtgL vemtk RPOL_BPSP6 : 723- 733: krneg Lmyt-LptgfiL eqkim RPOL_BPT3 : 217- 227: hvgir Liem-LiestgL velqr RPOL_BPT3 : 854- 865: qfadq LhetqLdkmppL pkkgn RPOL_BPT7 : 398- 408: lavsa Lssc-LskpisL ltirp RPOL_BPT7 : 853- 864: qfadq LhesqLdkmpaL pakgn RPOM_NEUCR : 250- 261: fntei LtyeeLtkvaeL cpkyn RPOM_YEAST : 475- 486: nhcrs LlsekLsdkksL nkvdt RPOM_YEAST : 476- 486: hcrsl Lsek-LsdkksL nkvdt RPOM_YEAST : 814- 824: iaraf Lgek-LyfphnL dfrgr RPOM_YEAST : 1255- 1265: rirkd Lsrk-LgrsttL adeiy RPOP_AGABT : 391- 402: riikv LkyikLdenpsL nalyp RPOP_AGABT : 748- 758: iaalt Leke-LasnvnL ytdss RPOP_AGABT : 869- 879: iiyfv Ltke-LpslrlL snyfe RPOP_AGABT : 1044- 1055: ndikg LtterLeykplL ssnyv RPOP_CLAPU : 148- 158: kyltk Lkks-LnkasgL nkegt RPOP_CLAPU : 267- 277: hlgak Liei-LiesdlL altlv RPOP_CLAPU : 746- 756: iseim Lkln-LpitwsL ptgle RPOP_MAIZE : 173- 183: takdy Lldk-LekpddL divra RPOP_MAIZE : 458- 469: khwsv LvsvgLlrpknL alfkr RPOP_MAIZE : 480- 491: kealr LlsslLfkheeL stiyr RPOP_MAIZE : 481- 491: ealrl Lssl-LfkheeL stiyr RPOP_NEUCR : 131- 141: pgvey Lkps-LiisivL gkvip RPOP_NEUIN : 376- 387: gsels LalinLfegkkL dekgl RPOP_NEUIN : 483- 494: hfaam LldleLgkyvnL insge RPOP_NEUIN : 484- 494: faaml Ldle-LgkyvnL insge RPOP_NEUIN : 627- 638: dyltr LakiyLkldipL swstp RPOP_NEUIN : 786- 797: kryey LplpvLpqmgeL nvedi T 20: 12.0102 32( 11) K-x(2)-E-x(1,2)-L Occurences: 32(11) RPOL_BPK11 : 235- 240: mhvgt KllEl-L iegtg RPOL_BPK11 : 600- 605: kivad KvnEv-L hqhav RPOL_BPK11 : 737- 742: evkdk KtkEv-L rkrca RPOL_BPSP6 : 718- 723: arfaa KrnEg-L mytlp RPOL_BPT3 : 165- 171: akhfk KhvEeqL nkrhg RPOL_BPT3 : 578- 583: givaq KvnEi-L kqdai RPOL_BPT3 : 715- 720: evkdk KtkEi-L rhrca RPOL_BPT7 : 53- 59: earfr KmfErqL kagev RPOL_BPT7 : 164- 170: akhfk KnvEeqL nkrvg RPOL_BPT7 : 577- 582: givak KvnEi-L qadai RPOL_BPT7 : 714- 719: evkdk KtgEi-L rkrca RPOM_NEUCR : 409- 415: lyqwq KdlEtrL rtmlv RPOM_NEUCR : 943- 949: aklvi KgiEddL akdne RPOM_NEUCR : 1086- 1091: kssah KndEi-L nnfqs RPOM_YEAST : 169- 174: nfpil KmnEk-L tndle RPOM_YEAST : 327- 332: tevls KdaEk-L iavdt RPOM_YEAST : 402- 408: tleek KafEsaL nifnq RPOM_YEAST : 1128- 1134: reesk KqvEtnL qtvfi RPOM_YEAST : 1211- 1217: reqfi KlhEvdL vlrlk RPOM_YEAST : 1274- 1279: iyfek KrqEl-L nspli RPOP_AGABT : 603- 609: lasly KdnEfyL pvyvd RPOP_CLAPU : 117- 123: liqdh KyaEvdL nkvns RPOP_CLAPU : 266- 271: lhlga KliEi-L iesdl RPOP_CLAPU : 923- 928: qehir KayEe-L akanm RPOP_MAIZE : 473- 478: nlalf KrkEa-L rllss RPOP_MAIZE : 519- 525: elytm KiaEayL dykiy RPOP_MAIZE : 731- 737: ltpne KdqEsvL akivs RPOP_MAIZE : 767- 772: dytlk KdvEd-L lkgks RPOP_MAIZE : 767- 773: dytlk KdvEdlL kgksd RPOP_NEUCR : 219- 224: ykntl KnlEe-L sgesi RPOP_NEUIN : 386- 392: lfegk KldEkgL fffyv RPOP_NEUIN : 754- 759: nkidy KfrEn-L kdyki RPOP_NEUIN : 781- 786: kikgn KryEy-L plpvl Number of patterns evaluated by Pratt:39502 Total running time: 76 seconds