------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file RNASE_T2_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 42 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RNASE_T2_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: POLG_BVDVN 3988 POLG_BVDVS 3898 POLG_HCVA 3898 POLG_HCVB 3898 RNI_AERHY 215 RNI_ECOLI 268 RNLE_LYCES 205 RNLX_LYCES 213 RNMC_MOMCH 191 RNM_ASPSA 238 RNRH_RHINI 238 RNS1_ARATH 230 RNS2_ARATH 259 RNS2_NICAL 214 RNS2_SOLTU 223 RNS3_ARATH 222 RNT2_ASPOR 276 RNTR_TRIVI 234 Pratt run started at Thu Feb 6 21:06:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 18( 18) K-H-G-x-C 2: 16.6802 18( 18) H-G-x-W-P 3: 16.1802 18( 18) G-L-x(0,1)-W-P 4: 12.5102 20( 18) H-G-x-C 5: 12.5102 20( 18) E-x(4)-G-x-C 6: 12.5102 18( 18) G-L-W 7: 12.5102 23( 18) K-x-G-x-C 8: 12.0102 21( 18) G-x(0,1)-L-x-P 9: 12.0102 23( 18) L-x(0,1)-W-P 10: 11.5102 27( 18) K-x(1,2)-G-x(1,2)-C 11: 11.5102 31( 18) F-x(3,4)-G-x(0,1)-L 12: 11.0102 34( 18) F-x(3,4)-G-x(0,2)-L 13: 11.0102 39( 18) L-x(1,2)-P-x(2,4)-G 14: 11.0102 34( 18) G-x(1,2)-P-x(0,2)-D 15: 10.5102 30( 18) H-x(0,2)-G-x(0,2)-P 16: 10.5102 67( 18) E-x(0,2)-K-x(2,4)-T 17: 10.5102 105( 18) K-x(1,3)-L-x(3,5)-L 18: 10.5102 81( 18) G-x(0,2)-L-x(1,3)-P 19: 8.3401 49( 18) T-C 20: 8.3401 122( 18) S-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 21.8932 18( 18) H-G-[IL]-W-P-[DEGNQ] B 2: 18.6066 18( 18) H-G-x-W-P-[DEGNQ] C 3: 18.4458 18( 18) G-L-x(0,1)-W-P-[DGNQ] D 4: 17.4037 18( 18) G-L-W-[GP]-[ADGNQT] E 5: 16.6802 18( 18) K-H-G-x-C F 6: 15.7215 19( 18) E-x(2)-[EK]-x-G-x-C G 7: 14.2758 21( 18) L-x(0,1)-W-P-[DGNQ] H 8: 12.7295 32( 18) E-x(0,2)-K-x(2,4)-T-[CDST] I 9: 12.6604 19( 18) F-x(3,4)-G-x(0,2)-L-x(2)-[DEGNQT] J 10: 12.5102 20( 18) H-G-x-C K 11: 12.5102 23( 18) K-x-G-x-C L 12: 12.1851 24( 18) H-x(0,2)-G-x(0,2)-P-[ADEGNQ] M 13: 12.0102 18( 18) G-L-x(0,1)-W N 14: 12.0102 21( 18) G-x(0,1)-L-x-P O 15: 11.5102 27( 18) K-x(1,2)-G-x(1,2)-C P 16: 11.5102 31( 18) F-x(3,4)-G-x(0,1)-L Q 17: 11.0102 39( 18) L-x(1,2)-P-x(2,4)-G R 18: 11.0102 34( 18) G-x(1,2)-P-x(0,2)-D S 19: 10.5102 105( 18) K-x(1,3)-L-x(3,5)-L T 20: 10.5102 81( 18) G-x(0,2)-L-x(1,3)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 21.8932 18( 18) H-G-[IL]-W-P-[DEGNQ] Occurences: 18(18) POLG_BVDVN : 300- 305: vnrsl HGIWPE kictg POLG_BVDVS : 300- 305: vnrsl HGIWPE kictg POLG_HCVA : 297- 302: vnrsl HGIWPE kickg POLG_HCVB : 297- 302: vsrsl HGIWPE kickg RNI_AERHY : 62- 67: lgfvl HGLWPQ yqrgy RNI_ECOLI : 78- 83: dfltv HGLWPG lpksv RNLE_LYCES : 39- 44: adfgi HGLWPN nndgt RNLX_LYCES : 39- 44: edfsi HGLWPN ykdgk RNMC_MOMCH : 34- 39: rtfti HGLWPQ gsgts RNM_ASPSA : 51- 56: dswti HGLWPD ncdgs RNRH_RHINI : 62- 67: naftl HGLWPD kcsga RNS1_ARATH : 65- 70: adfgi HGLWPN ykdgt RNS2_ARATH : 71- 76: tqfti HGLWPD yndgs RNS2_NICAL : 53- 58: tnfti HGLWPD nhttm RNS2_SOLTU : 55- 60: nnfti HGLWPD kkpmr RNS3_ARATH : 57- 62: adfgi HGLWPN yktgg RNT2_ASPOR : 70- 75: dswti HGLWPD ncdgs RNTR_TRIVI : 52- 57: dswti HGLWPD ncdgs B 2: 18.6066 18( 18) H-G-x-W-P-[DEGNQ] Occurences: 18(18) POLG_BVDVN : 300- 305: vnrsl HGiWPE kictg POLG_BVDVS : 300- 305: vnrsl HGiWPE kictg POLG_HCVA : 297- 302: vnrsl HGiWPE kickg POLG_HCVB : 297- 302: vsrsl HGiWPE kickg RNI_AERHY : 62- 67: lgfvl HGlWPQ yqrgy RNI_ECOLI : 78- 83: dfltv HGlWPG lpksv RNLE_LYCES : 39- 44: adfgi HGlWPN nndgt RNLX_LYCES : 39- 44: edfsi HGlWPN ykdgk RNMC_MOMCH : 34- 39: rtfti HGlWPQ gsgts RNM_ASPSA : 51- 56: dswti HGlWPD ncdgs RNRH_RHINI : 62- 67: naftl HGlWPD kcsga RNS1_ARATH : 65- 70: adfgi HGlWPN ykdgt RNS2_ARATH : 71- 76: tqfti HGlWPD yndgs RNS2_NICAL : 53- 58: tnfti HGlWPD nhttm RNS2_SOLTU : 55- 60: nnfti HGlWPD kkpmr RNS3_ARATH : 57- 62: adfgi HGlWPN yktgg RNT2_ASPOR : 70- 75: dswti HGlWPD ncdgs RNTR_TRIVI : 52- 57: dswti HGlWPD ncdgs C 3: 18.4458 18( 18) G-L-x(0,1)-W-P-[DGNQ] Occurences: 18(18) POLG_BVDVN : 2338- 2343: avdll GLdWPD pgnqq POLG_BVDVS : 2248- 2253: avdll GLdWPD pgnqq POLG_HCVA : 2248- 2253: avell GLdWPD pgnqg POLG_HCVB : 2248- 2253: avell GLdWPD pgnqg RNI_AERHY : 63- 67: gfvlh GL-WPQ yqrgy RNI_ECOLI : 79- 83: fltvh GL-WPG lpksv RNLE_LYCES : 40- 44: dfgih GL-WPN nndgt RNLX_LYCES : 40- 44: dfsih GL-WPN ykdgk RNMC_MOMCH : 35- 39: tftih GL-WPQ gsgts RNM_ASPSA : 52- 56: swtih GL-WPD ncdgs RNRH_RHINI : 63- 67: aftlh GL-WPD kcsga RNS1_ARATH : 66- 70: dfgih GL-WPN ykdgt RNS2_ARATH : 72- 76: qftih GL-WPD yndgs RNS2_NICAL : 54- 58: nftih GL-WPD nhttm RNS2_SOLTU : 56- 60: nftih GL-WPD kkpmr RNS3_ARATH : 58- 62: dfgih GL-WPN yktgg RNT2_ASPOR : 71- 75: swtih GL-WPD ncdgs RNTR_TRIVI : 53- 57: swtih GL-WPD ncdgs D 4: 17.4037 18( 18) G-L-W-[GP]-[ADGNQT] Occurences: 18(18) POLG_BVDVN : 2491- 2495: eiiry GLWGT htaly POLG_BVDVS : 2401- 2405: viiry GLWGT htaly POLG_HCVA : 2401- 2405: diiky GLWGA htaly POLG_HCVB : 2401- 2405: diiky GLWGT htaly RNI_AERHY : 63- 67: gfvlh GLWPQ yqrgy RNI_ECOLI : 79- 83: fltvh GLWPG lpksv RNLE_LYCES : 40- 44: dfgih GLWPN nndgt RNLX_LYCES : 40- 44: dfsih GLWPN ykdgk RNMC_MOMCH : 35- 39: tftih GLWPQ gsgts RNM_ASPSA : 52- 56: swtih GLWPD ncdgs RNRH_RHINI : 63- 67: aftlh GLWPD kcsga RNS1_ARATH : 66- 70: dfgih GLWPN ykdgt RNS2_ARATH : 72- 76: qftih GLWPD yndgs RNS2_NICAL : 54- 58: nftih GLWPD nhttm RNS2_SOLTU : 56- 60: nftih GLWPD kkpmr RNS3_ARATH : 58- 62: dfgih GLWPN yktgg RNT2_ASPOR : 71- 75: swtih GLWPD ncdgs RNTR_TRIVI : 53- 57: swtih GLWPD ncdgs E 5: 16.6802 18( 18) K-H-G-x-C Occurences: 18(18) POLG_BVDVN : 348- 352: rhewn KHGwC nwyni POLG_BVDVS : 348- 352: rhewn KHGwC nwyni POLG_HCVA : 345- 349: rhewn KHGwC nwyni POLG_HCVB : 345- 349: rhewn KHGwC nwyni RNI_AERHY : 105- 109: rhewe KHGtC sglsq RNI_ECOLI : 155- 159: ryeya KHGaC fgfdp RNLE_LYCES : 96- 100: shewe KHGtC aesvl RNLX_LYCES : 96- 100: shewl KHGtC salnq RNMC_MOMCH : 88- 92: shewt KHGtC sestf RNM_ASPSA : 114- 118: ehewn KHGtC intid RNRH_RHINI : 124- 128: shews KHGtC vstyd RNS1_ARATH : 122- 126: ehewe KHGtC sesvi RNS2_ARATH : 132- 136: ghewe KHGtC sspvf RNS2_NICAL : 112- 116: kdeyv KHGtC csdkf RNS2_SOLTU : 115- 119: kdqyk KHGtC clpry RNS3_ARATH : 114- 118: thewe KHGtC aesel RNT2_ASPOR : 131- 135: ehewn KHGtC intie RNTR_TRIVI : 113- 117: ehewg KHGtC ittld F 6: 15.7215 19( 18) E-x(2)-[EK]-x-G-x-C Occurences: 19(18) POLG_BVDVN : 345- 352: rlqrh EwnKhGwC nwyni POLG_BVDVS : 345- 352: rlqrh EwnKhGwC nwyni POLG_HCVA : 342- 349: rlqrh EwnKhGwC nwyni POLG_HCVB : 342- 349: klqrh EwnKhGwC nwyni RNI_AERHY : 102- 109: flyrh EweKhGtC sglsq RNI_ECOLI : 152- 159: clery EyaKhGaC fgfdp RNLE_LYCES : 93- 100: tfwsh EweKhGtC aesvl RNLX_LYCES : 93- 100: kfwsh EwlKhGtC salnq RNMC_MOMCH : 85- 92: qfwsh EwtKhGtC sestf RNM_ASPSA : 111- 118: sfweh EwnKhGtC intid RNRH_RHINI : 121- 128: vfwsh EwsKhGtC vstyd RNS1_ARATH : 119- 126: afweh EweKhGtC sesvi RNS2_ARATH : 129- 136: sfwgh EweKhGtC sspvf RNS2_NICAL : 109- 116: afwkd EyvKhGtC csdkf RNS2_NICAL : 180- 187: csrlr ElkEiGiC fdetv RNS2_SOLTU : 187- 194: iqgvl ElyEiGiC ftpea RNS3_ARATH : 111- 118: kfwth EweKhGtC aesel RNT2_ASPOR : 128- 135: efweh EwnKhGtC intie RNTR_TRIVI : 110- 117: sfweh EwgKhGtC ittld G 7: 14.2758 21( 18) L-x(0,1)-W-P-[DGNQ] Occurences: 21(18) POLG_BVDVN : 2339- 2343: vdllg LdWPD pgnqq POLG_BVDVS : 2249- 2253: vdllg LdWPD pgnqq POLG_HCVA : 2249- 2253: vellg LdWPD pgnqg POLG_HCVB : 2249- 2253: vellg LdWPD pgnqg RNI_AERHY : 64- 67: fvlhg L-WPQ yqrgy RNI_ECOLI : 80- 83: ltvhg L-WPG lpksv RNLE_LYCES : 41- 44: fgihg L-WPN nndgt RNLX_LYCES : 41- 44: fsihg L-WPN ykdgk RNMC_MOMCH : 36- 39: ftihg L-WPQ gsgts RNMC_MOMCH : 69- 72: sqlnt L-WPN vlran RNM_ASPSA : 53- 56: wtihg L-WPD ncdgs RNRH_RHINI : 64- 67: ftlhg L-WPD kcsga RNS1_ARATH : 67- 70: fgihg L-WPN ykdgt RNS2_ARATH : 39- 43: yfals LqWPG tycrg RNS2_ARATH : 73- 76: ftihg L-WPD yndgs RNS2_NICAL : 55- 58: ftihg L-WPD nhttm RNS2_SOLTU : 57- 60: ftihg L-WPD kkpmr RNS3_ARATH : 29- 33: ffyfv LqWPG aycds RNS3_ARATH : 59- 62: fgihg L-WPN yktgg RNT2_ASPOR : 72- 75: wtihg L-WPD ncdgs RNTR_TRIVI : 54- 57: wtihg L-WPD ncdgs H 8: 12.7295 32( 18) E-x(0,2)-K-x(2,4)-T-[CDST] Occurences: 32(18) POLG_BVDVN : 332- 338: mmdas E--Ktny-TC crlqr POLG_BVDVN : 1494- 1500: vcegr Ew-Kgg--TC pkcgr POLG_BVDVN : 1887- 1894: tadlt EmvKki--TS mnrgd POLG_BVDVS : 332- 338: mmdas E--Ktny-TC crlqr POLG_BVDVS : 1491- 1500: ictvc EgrKwkggTC pkcgr POLG_BVDVS : 1797- 1804: tadlt EmvKki--TS mnrgd POLG_BVDVS : 2979- 2986: vtpvm E--KvepdTD nnqss POLG_HCVA : 1797- 1804: atdlt EmvKki--TT mnrge POLG_HCVA : 3154- 3163: iatik EkaKqlgaTD stkis POLG_HCVB : 1599- 1606: ckkvt EheKct--TS imdkl POLG_HCVB : 1601- 1606: kvteh E--Kct--TS imdkl POLG_HCVB : 1797- 1804: ttdlt EmvKki--TT mnrge POLG_HCVB : 3154- 3163: iatik EkaKqlgaTD stkis RNI_AERHY : 102- 109: flyrh EweKhg--TC sglsq RNI_AERHY : 104- 109: yrhew E--Khg--TC sglsq RNI_ECOLI : 211- 220: kswgk EnvKavklTC qgnpa RNLE_LYCES : 93- 100: tfwsh EweKhg--TC aesvl RNLE_LYCES : 95- 100: wshew E--Khg--TC aesvl RNLX_LYCES : 93- 100: kfwsh EwlKhg--TC salnq RNMC_MOMCH : 85- 92: qfwsh EwtKhg--TC sestf RNM_ASPSA : 111- 118: sfweh EwnKhg--TC intid RNRH_RHINI : 121- 128: vfwsh EwsKhg--TC vstyd RNS1_ARATH : 119- 126: afweh EweKhg--TC sesvi RNS1_ARATH : 121- 126: wehew E--Khg--TC sesvi RNS2_ARATH : 129- 136: sfwgh EweKhg--TC sspvf RNS2_ARATH : 131- 136: wghew E--Khg--TC sspvf RNS2_NICAL : 109- 116: afwkd EyvKhg--TC csdkf RNS2_SOLTU : 138- 145: amrlk E--KfdllTT lrthg RNS3_ARATH : 111- 118: kfwth EweKhg--TC aesel RNS3_ARATH : 113- 118: wthew E--Khg--TC aesel RNT2_ASPOR : 128- 135: efweh EwnKhg--TC intie RNTR_TRIVI : 110- 117: sfweh EwgKhg--TC ittld I 9: 12.6604 19( 18) F-x(3,4)-G-x(0,2)-L-x(2)-[DEGNQT] Occurences: 19(18) POLG_BVDVN : 414- 423: kkgkn Fsfa-Gi-LmrG pcnfe POLG_BVDVS : 414- 423: kkgkn Fsfa-Gv-LtrG pcnfe POLG_HCVA : 3078- 3089: tallk FvdykGtfLtrE tleal POLG_HCVB : 3078- 3089: nallk FvdykGtfLtrE tleal RNI_AERHY : 59- 67: srqlg Fvlh-G--LwpQ yqrgy RNI_ECOLI : 74- 83: tnkad FltvhG--LwpG lpksv RNLE_LYCES : 36- 44: kpaad Fgih-G--LwpN nndgt RNLX_LYCES : 36- 44: kpded Fsih-G--LwpN ykdgk RNMC_MOMCH : 31- 39: sglrt Ftih-G--LwpQ gsgts RNM_ASPSA : 23- 33: eascc FnspgGs-LlqT qfwdy RNM_ASPSA : 23- 33: eascc Fnsp-GgsLlqT qfwdy RNM_ASPSA : 23- 34: eascc FnspgGslLqtQ fwdyd RNRH_RHINI : 59- 67: gpdna Ftlh-G--LwpD kcsga RNS1_ARATH : 62- 70: kpaad Fgih-G--LwpN ykdgt RNS2_ARATH : 68- 76: daptq Ftih-G--LwpD yndgs RNS2_NICAL : 50- 58: rtptn Ftih-G--LwpD nhttm RNS2_SOLTU : 52- 60: ippnn Ftih-G--LwpD kkpmr RNS3_ARATH : 54- 62: kpaad Fgih-G--LwpN yktgg RNT2_ASPOR : 42- 52: adscc FnspgGa-LlqT qfwdt RNT2_ASPOR : 42- 52: adscc Fnsp-GgaLlqT qfwdt RNT2_ASPOR : 42- 53: adscc FnspgGalLqtQ fwdtn RNTR_TRIVI : 25- 34: qdtcc Fips-Gq-LlqT qfwdt RNTR_TRIVI : 25- 35: qdtcc Fips-GqlLqtQ fwdtd RNTR_TRIVI : 201- 210: evwyh Fnvk-Gs-LqdG qfvaa J 10: 12.5102 20( 18) H-G-x-C Occurences: 20(18) POLG_BVDVN : 349- 352: hewnk HGwC nwyni POLG_BVDVS : 349- 352: hewnk HGwC nwyni POLG_HCVA : 346- 349: hewnk HGwC nwyni POLG_HCVB : 346- 349: hewnk HGwC nwyni RNI_AERHY : 106- 109: hewek HGtC sglsq RNI_ECOLI : 156- 159: yeyak HGaC fgfdp RNLE_LYCES : 97- 100: hewek HGtC aesvl RNLX_LYCES : 97- 100: hewlk HGtC salnq RNMC_MOMCH : 89- 92: hewtk HGtC sestf RNM_ASPSA : 115- 118: hewnk HGtC intid RNRH_RHINI : 125- 128: hewsk HGtC vstyd RNS1_ARATH : 123- 126: hewek HGtC sesvi RNS1_ARATH : 218- 221: cpvfp HGkC gaeie RNS2_ARATH : 133- 136: hewek HGtC sspvf RNS2_NICAL : 113- 116: deyvk HGtC csdkf RNS2_SOLTU : 116- 119: dqykk HGtC clpry RNS3_ARATH : 115- 118: hewek HGtC aesel RNS3_ARATH : 210- 213: cpvmp HGrC dsrvq RNT2_ASPOR : 132- 135: hewnk HGtC intie RNTR_TRIVI : 114- 117: hewgk HGtC ittld K 11: 12.5102 23( 18) K-x-G-x-C Occurences: 23(18) POLG_BVDVN : 65- 69: laslp KrGdC rsgns POLG_BVDVN : 348- 352: rhewn KhGwC nwyni POLG_BVDVN : 1496- 1500: egrew KgGtC pkcgr POLG_BVDVS : 65- 69: laslp KrGdC rsgns POLG_BVDVS : 348- 352: rhewn KhGwC nwyni POLG_BVDVS : 1496- 1500: egrkw KgGtC pkcgr POLG_HCVA : 345- 349: rhewn KhGwC nwyni POLG_HCVB : 345- 349: rhewn KhGwC nwyni RNI_AERHY : 105- 109: rhewe KhGtC sglsq RNI_ECOLI : 155- 159: ryeya KhGaC fgfdp RNLE_LYCES : 96- 100: shewe KhGtC aesvl RNLX_LYCES : 96- 100: shewl KhGtC salnq RNMC_MOMCH : 19- 23: vcsfq KsGsC pgsgl RNMC_MOMCH : 88- 92: shewt KhGtC sestf RNM_ASPSA : 114- 118: ehewn KhGtC intid RNRH_RHINI : 124- 128: shews KhGtC vstyd RNS1_ARATH : 122- 126: ehewe KhGtC sesvi RNS2_ARATH : 132- 136: ghewe KhGtC sspvf RNS2_NICAL : 112- 116: kdeyv KhGtC csdkf RNS2_SOLTU : 115- 119: kdqyk KhGtC clpry RNS3_ARATH : 114- 118: thewe KhGtC aesel RNT2_ASPOR : 131- 135: ehewn KhGtC intie RNTR_TRIVI : 113- 117: ehewg KhGtC ittld L 12: 12.1851 24( 18) H-x(0,2)-G-x(0,2)-P-[ADEGNQ] Occurences: 24(18) POLG_BVDVN : 300- 305: vnrsl H--GiwPE kictg POLG_BVDVN : 3324- 3330: lgcgv Hl-GtiPA rrvki POLG_BVDVN : 3740- 3746: gmqil HeaGk-PQ kiteg POLG_BVDVS : 300- 305: vnrsl H--GiwPE kictg POLG_BVDVS : 3234- 3240: lgcgv Hl-GtvPA rrvkm POLG_BVDVS : 3650- 3656: gmqil HeaGk-PQ klteg POLG_HCVA : 297- 302: vnrsl H--GiwPE kickg POLG_HCVB : 297- 302: vsrsl H--GiwPE kickg RNI_AERHY : 62- 67: lgfvl H--GlwPQ yqrgy RNI_ECOLI : 78- 83: dfltv H--GlwPG lpksv RNLE_LYCES : 39- 44: adfgi H--GlwPN nndgt RNLX_LYCES : 39- 44: edfsi H--GlwPN ykdgk RNMC_MOMCH : 34- 39: rtfti H--GlwPQ gsgts RNMC_MOMCH : 122- 127: galrp HaaG--PN grtks RNM_ASPSA : 51- 56: dswti H--GlwPD ncdgs RNRH_RHINI : 62- 67: naftl H--GlwPD kcsga RNS1_ARATH : 65- 70: adfgi H--GlwPN ykdgt RNS2_ARATH : 71- 76: tqfti H--GlwPD yndgs RNS2_NICAL : 53- 58: tnfti H--GlwPD nhttm RNS2_SOLTU : 55- 60: nnfti H--GlwPD kkpmr RNS2_SOLTU : 149- 154: ttlrt H--GitPG tkhtf RNS3_ARATH : 57- 62: adfgi H--GlwPN yktgg RNT2_ASPOR : 70- 75: dswti H--GlwPD ncdgs RNTR_TRIVI : 52- 57: dswti H--GlwPD ncdgs M 13: 12.0102 18( 18) G-L-x(0,1)-W Occurences: 18(18) POLG_BVDVN : 2338- 2341: avdll GLdW pdpgn POLG_BVDVS : 2248- 2251: avdll GLdW pdpgn POLG_HCVA : 2248- 2251: avell GLdW pdpgn POLG_HCVB : 2248- 2251: avell GLdW pdpgn RNI_AERHY : 63- 65: gfvlh GL-W pqyqr RNI_ECOLI : 79- 81: fltvh GL-W pglpk RNLE_LYCES : 40- 42: dfgih GL-W pnnnd RNLX_LYCES : 40- 42: dfsih GL-W pnykd RNMC_MOMCH : 35- 37: tftih GL-W pqgsg RNM_ASPSA : 52- 54: swtih GL-W pdncd RNRH_RHINI : 63- 65: aftlh GL-W pdkcs RNS1_ARATH : 66- 68: dfgih GL-W pnykd RNS2_ARATH : 72- 74: qftih GL-W pdynd RNS2_NICAL : 54- 56: nftih GL-W pdnht RNS2_SOLTU : 56- 58: nftih GL-W pdkkp RNS3_ARATH : 58- 60: dfgih GL-W pnykt RNT2_ASPOR : 71- 73: swtih GL-W pdncd RNTR_TRIVI : 53- 55: swtih GL-W pdncd N 14: 12.0102 21( 18) G-x(0,1)-L-x-P Occurences: 21(18) POLG_BVDVN : 794- 797: dnfef G-LcP cdakp POLG_BVDVS : 794- 797: ddfef G-LcP cdakp POLG_HCVA : 790- 793: ddfgf G-LcP fdtsp POLG_HCVA : 3192- 3196: eenkq GsLaP lfeel POLG_HCVB : 790- 793: ddfgf G-LcP ydtsp RNI_AERHY : 63- 66: gfvlh G-LwP qyqrg RNI_AERHY : 91- 94: eqefa G-LyP srfly RNI_ECOLI : 79- 82: fltvh G-LwP glpks RNLE_LYCES : 40- 43: dfgih G-LwP nnndg RNLX_LYCES : 40- 43: dfsih G-LwP nykdg RNMC_MOMCH : 35- 38: tftih G-LwP qgsgt RNMC_MOMCH : 117- 121: nydii GaLrP haagp RNM_ASPSA : 52- 55: swtih G-LwP dncdg RNRH_RHINI : 63- 66: aftlh G-LwP dkcsg RNS1_ARATH : 66- 69: dfgih G-LwP nykdg RNS2_ARATH : 72- 75: qftih G-LwP dyndg RNS2_NICAL : 54- 57: nftih G-LwP dnhtt RNS2_SOLTU : 56- 59: nftih G-LwP dkkpm RNS3_ARATH : 58- 61: dfgih G-LwP nyktg RNT2_ASPOR : 71- 74: swtih G-LwP dncdg RNTR_TRIVI : 53- 56: swtih G-LwP dncdg O 15: 11.5102 27( 18) K-x(1,2)-G-x(1,2)-C Occurences: 27(18) POLG_BVDVN : 65- 69: laslp Kr-Gd-C rsgns POLG_BVDVN : 348- 352: rhewn Kh-Gw-C nwyni POLG_BVDVN : 1496- 1500: egrew Kg-Gt-C pkcgr POLG_BVDVS : 65- 69: laslp Kr-Gd-C rsgns POLG_BVDVS : 348- 352: rhewn Kh-Gw-C nwyni POLG_BVDVS : 1494- 1500: vcegr KwkGgtC pkcgr POLG_BVDVS : 1496- 1500: egrkw Kg-Gt-C pkcgr POLG_HCVA : 345- 349: rhewn Kh-Gw-C nwyni POLG_HCVB : 345- 349: rhewn Kh-Gw-C nwyni RNI_AERHY : 105- 109: rhewe Kh-Gt-C sglsq RNI_ECOLI : 155- 159: ryeya Kh-Ga-C fgfdp RNLE_LYCES : 96- 100: shewe Kh-Gt-C aesvl RNLX_LYCES : 96- 100: shewl Kh-Gt-C salnq RNMC_MOMCH : 19- 23: vcsfq Ks-Gs-C pgsgl RNMC_MOMCH : 88- 92: shewt Kh-Gt-C sestf RNMC_MOMCH : 146- 152: kakfg KfpGlrC rtdpq RNM_ASPSA : 114- 118: ehewn Kh-Gt-C intid RNRH_RHINI : 124- 128: shews Kh-Gt-C vstyd RNS1_ARATH : 122- 126: ehewe Kh-Gt-C sesvi RNS2_ARATH : 132- 136: ghewe Kh-Gt-C sspvf RNS2_NICAL : 112- 116: kdeyv Kh-Gt-C csdkf RNS2_NICAL : 112- 117: kdeyv Kh-GtcC sdkfd RNS2_NICAL : 182- 187: rlrel KeiGi-C fdetv RNS2_SOLTU : 114- 119: wkdqy KkhGt-C clpry RNS2_SOLTU : 114- 120: wkdqy KkhGtcC lpryn RNS2_SOLTU : 115- 119: kdqyk Kh-Gt-C clpry RNS2_SOLTU : 115- 120: kdqyk Kh-GtcC lpryn RNS3_ARATH : 114- 118: thewe Kh-Gt-C aesel RNT2_ASPOR : 131- 135: ehewn Kh-Gt-C intie RNTR_TRIVI : 113- 117: ehewg Kh-Gt-C ittld P 16: 11.5102 31( 18) F-x(3,4)-G-x(0,1)-L Occurences: 31(18) POLG_BVDVN : 414- 420: kkgkn Fsfa-GiL mrgpc POLG_BVDVN : 904- 910: wcgyq FkeseG-L phypi POLG_BVDVN : 1433- 1440: kglkk FyllsGrL rnlii POLG_BVDVN : 2063- 2069: dlgsq FldiaG-L kipvd POLG_BVDVN : 2164- 2169: sskip Fivt-G-L krmav POLG_BVDVN : 2839- 2846: yemka FknvgGkL tkvee POLG_BVDVS : 414- 420: kkgkn Fsfa-GvL trgpc POLG_BVDVS : 904- 910: wcgyk FqkseG-L phypi POLG_BVDVS : 1433- 1440: kglkk FyllsGrL rnlii POLG_BVDVS : 1973- 1979: dlgsq FldiaG-L kipvd POLG_BVDVS : 2074- 2079: sskip Fivt-G-L krmav POLG_HCVA : 900- 906: wcgfe FkepyG-L phypi POLG_HCVA : 2074- 2079: spkmp Fivt-G-L krmav POLG_HCVB : 900- 906: wcgfd FnepdG-L phypi POLG_HCVB : 2074- 2079: spkmp Fivt-G-L krmav RNI_AERHY : 59- 64: srqlg Fvlh-G-L wpqyq RNI_ECOLI : 74- 80: tnkad FltvhG-L wpglp RNLE_LYCES : 36- 41: kpaad Fgih-G-L wpnnn RNLX_LYCES : 36- 41: kpded Fsih-G-L wpnyk RNMC_MOMCH : 31- 36: sglrt Ftih-G-L wpqgs RNMC_MOMCH : 144- 150: flkak FgkfpG-L rcrtd RNM_ASPSA : 23- 30: eascc FnspgGsL lqtqf RNRH_RHINI : 59- 64: gpdna Ftlh-G-L wpdkc RNS1_ARATH : 62- 67: kpaad Fgih-G-L wpnyk RNS2_ARATH : 68- 73: daptq Ftih-G-L wpdyn RNS2_NICAL : 50- 55: rtptn Ftih-G-L wpdnh RNS2_SOLTU : 52- 57: ippnn Ftih-G-L wpdkk RNS3_ARATH : 54- 59: kpaad Fgih-G-L wpnyk RNT2_ASPOR : 42- 49: adscc FnspgGaL lqtqf RNTR_TRIVI : 25- 31: qdtcc Fips-GqL lqtqf RNTR_TRIVI : 201- 207: evwyh Fnvk-GsL qdgqf Q 17: 11.0102 39( 18) L-x(1,2)-P-x(2,4)-G Occurences: 39(18) POLG_BVDVN : 45- 52: hpqst LklPhkr-G erdvp POLG_BVDVN : 1566- 1572: aecnr Lh-Paee-G dfwae POLG_BVDVN : 2292- 2299: vqvpv Lf-PkirnG evtdt POLG_BVDVN : 2339- 2345: vdllg LdwPdp--G nqqvv POLG_BVDVN : 3929- 3935: sktgh LyiPdk--G ftlqg POLG_BVDVS : 45- 52: hpqst LklPhkr-G ernvp POLG_BVDVS : 2202- 2209: vqvpv Lf-PkirnG evtdt POLG_BVDVS : 2249- 2255: vdllg LdwPdp--G nqqvv POLG_BVDVS : 3839- 3845: sktgh LyiPdk--G ftlqg POLG_HCVA : 45- 52: hpqst LklPhdr-G rgdir POLG_HCVA : 75- 80: rsgnh Lg-Pvs--G iyikp POLG_HCVA : 816- 824: gsafy LvcPigwtG vvect POLG_HCVA : 2202- 2209: tqvpv Lf-PkirnG evtdt POLG_HCVA : 2249- 2255: vellg LdwPdp--G nqgtv POLG_HCVB : 45- 52: hpqst LklPhdr-G rgnik POLG_HCVB : 75- 80: rsgnh Lg-Pvs--G iyvkp POLG_HCVB : 816- 824: gsafy LvcPigwtG viect POLG_HCVB : 2202- 2209: tqvpv Lf-PkiknG evtds POLG_HCVB : 2249- 2255: vellg LdwPdp--G nqgtv RNI_AERHY : 64- 71: fvlhg Lw-PqyqrG ypssc RNI_AERHY : 158- 166: gqcqr LagPgqhhG glrrr RNI_ECOLI : 249- 255: sansf LpqPhp--G ncgkt RNLE_LYCES : 41- 48: fgihg Lw-PnnndG typsn RNLE_LYCES : 79- 86: qnwpt LacPsgs-G stfws RNLX_LYCES : 41- 48: fsihg Lw-PnykdG kwpqn RNLX_LYCES : 79- 86: knwps LacPssd-G lkfws RNMC_MOMCH : 36- 42: ftihg Lw-Pqgs-G tsltn RNMC_MOMCH : 119- 125: diiga Lr-Phaa-G pngrt RNM_ASPSA : 53- 60: wtihg Lw-PdncdG syqey RNRH_RHINI : 64- 71: ftlhg Lw-PdkcsG ayaps RNS1_ARATH : 67- 74: fgihg Lw-PnykdG typsn RNS1_ARATH : 105- 112: kswpt LacPsgs-G eafwe RNS2_ARATH : 73- 80: ftihg Lw-PdyndG swpsc RNS2_NICAL : 17- 22: illca Ls-Piy--G afeym RNS2_SOLTU : 17- 22: vfffs Ls-Piy--G dfdym RNS3_ARATH : 59- 66: fgihg Lw-PnyktG gwpqn RNS3_ARATH : 97- 104: rewpt LscPsnd-G mkfwt RNT2_ASPOR : 72- 79: wtihg Lw-PdncdG sygqf RNTR_TRIVI : 54- 61: wtihg Lw-PdncdG sfpqt R 18: 11.0102 34( 18) G-x(1,2)-P-x(0,2)-D Occurences: 34(18) POLG_BVDVN : 794- 799: dnfef GlcPc-D akpiv POLG_BVDVN : 1608- 1612: gcqrv GisP--D thrvp POLG_BVDVN : 1787- 1790: vktds Gc-P--D garcy POLG_BVDVN : 3675- 3678: gqrgs Gq-P--D tsagn POLG_BVDVS : 794- 799: ddfef GlcPc-D akpiv POLG_BVDVS : 1697- 1700: vktds Gc-P--D garcy POLG_BVDVS : 3585- 3588: gqrgs Gq-P--D tsagn POLG_HCVA : 371- 374: tnlte Gp-P--D kecav POLG_HCVA : 790- 795: ddfgf GlcPf-D tspvi POLG_HCVA : 2727- 2731: tddri Gl-Ph-D nylrv POLG_HCVA : 3586- 3589: gqrgs Gq-P--D tsagn POLG_HCVB : 790- 795: ddfgf GlcPy-D tspvv POLG_HCVB : 2727- 2731: tddri Gl-Pq-D nflrv POLG_HCVB : 3586- 3589: gqrgs Gq-P--D tsagn RNI_AERHY : 205- 208: elpsc Gq-P--D fllrt RNI_ECOLI : 161- 165: hgacf GfdP--D ayfgt RNLE_LYCES : 30- 35: cyptt Gk-PaaD fgihg RNLX_LYCES : 30- 33: cyptt Gk-P--D edfsi RNLX_LYCES : 30- 35: cyptt Gk-PdeD fsihg RNMC_MOMCH : 51- 55: tncpq Gs-Pf-D itkis RNM_ASPSA : 52- 56: swtih GlwP--D ncdgs RNM_ASPSA : 160- 166: alsda GitPseD atykl RNRH_RHINI : 52- 56: mqwap GygP--D naftl RNRH_RHINI : 63- 67: aftlh GlwP--D kcsga RNS1_ARATH : 56- 61: cypns Gk-PaaD fgihg RNS1_ARATH : 157- 161: altka GinP--D gksys RNS2_ARATH : 72- 76: qftih GlwP--D yndgs RNS2_NICAL : 54- 58: nftih GlwP--D nhttm RNS2_SOLTU : 56- 60: nftih GlwP--D kkpmr RNS3_ARATH : 48- 53: cypqt Gk-PaaD fgihg RNS3_ARATH : 149- 153: altna GikP--D dkfye RNS3_ARATH : 149- 154: altna GikPd-D kfyem RNT2_ASPOR : 71- 75: swtih GlwP--D ncdgs RNT2_ASPOR : 177- 181: alaka GivP--D sskty RNTR_TRIVI : 53- 57: swtih GlwP--D ncdgs RNTR_TRIVI : 159- 163: wlada GitP--D gsksy S 19: 10.5102 105( 18) K-x(1,3)-L-x(3,5)-L Occurences: 105(18) POLG_BVDVN : 248- 254: pqesr Kk--Leka--L lawai POLG_BVDVN : 248- 255: pqesr Kk--Lekal-L awaii POLG_BVDVN : 593- 602: vmdcd Ktq-LnltveL ttaev POLG_BVDVN : 644- 653: vsqvv Klv-LralrdL triwn POLG_BVDVN : 864- 870: gcitq Kn--Lged--L hncil POLG_BVDVN : 1105- 1115: reesv KkwvLllyhiL vvhpi POLG_BVDVN : 1106- 1115: eesvk KwvlLlyhi-L vvhpi POLG_BVDVN : 1106- 1115: eesvk Kwv-LllyhiL vvhpi POLG_BVDVN : 1215- 1222: dyfry Kkw-Lqci--L slvsg POLG_BVDVN : 1215- 1224: dyfry Kkw-LqcilsL vsgvf POLG_BVDVN : 1216- 1222: yfryk Kw--Lqci--L slvsg POLG_BVDVN : 1216- 1224: yfryk Kw--LqcilsL vsgvf POLG_BVDVN : 1376- 1385: scvss Kwq-LiymsyL tldfm POLG_BVDVN : 1428- 1435: eeees Kg--Lkkfy-L lsgrl POLG_BVDVN : 1428- 1436: eeees Kg--LkkfylL sgrlr POLG_BVDVN : 1431- 1440: eskgl KkfyLlsgr-L rnlii POLG_BVDVN : 1432- 1440: skglk KfylLsgr--L rnlii POLG_BVDVN : 1432- 1440: skglk Kfy-Llsgr-L rnlii POLG_BVDVN : 1655- 1664: pvlat KvkmLmvgn-L geeig POLG_BVDVN : 1657- 1664: latkv Km--Lmvgn-L geeig POLG_BVDVN : 1836- 1844: affdl Kn--LkgwsgL pifea POLG_BVDVN : 1927- 1935: eigrh Krv-Lvlip-L raaae POLG_BVDVN : 2055- 2064: apevm KgedLgsqf-L diagl POLG_BVDVN : 2354- 2362: vvetg Ka--LkqvtgL ssaen POLG_BVDVN : 2769- 2779: mdsqg KirnLsgnyiL dliyg POLG_BVDVN : 3172- 3181: emvdf KgtfLdrea-L ealsl POLG_BVDVN : 3382- 3390: gnlnt Kkm-Lnpgk-L seqld POLG_BVDVN : 3383- 3390: nlntk Km--Lnpgk-L seqld POLG_BVDVN : 3507- 3513: vldse Kh--Lveq--L vrdlk POLG_BVDVN : 3878- 3886: rtgfe KlanLnls--L stlgv POLG_BVDVS : 248- 254: ppesr Kk--Leka--L lawai POLG_BVDVS : 248- 255: ppesr Kk--Lekal-L awail POLG_BVDVS : 252- 260: rkkle Kal-Lawai-L avvli POLG_BVDVS : 252- 260: rkkle Ka--LlawaiL avvli POLG_BVDVS : 593- 602: itdcd Ktq-LnltieL ttadv POLG_BVDVS : 644- 653: vgqvv Kiv-LralrdL triwn POLG_BVDVS : 864- 870: gcitq Kt--Lged--L ydcal POLG_BVDVS : 1105- 1115: reesv KkwvLllyhiL vahpl POLG_BVDVS : 1106- 1115: eesvk KwvlLlyhi-L vahpl POLG_BVDVS : 1106- 1115: eesvk Kwv-LllyhiL vahpl POLG_BVDVS : 1215- 1222: dyfry Krw-Lqci--L slvsg POLG_BVDVS : 1215- 1224: dyfry Krw-LqcilsL vsgvf POLG_BVDVS : 1270- 1277: vvtmw Kid-Lagl--L lqgvp POLG_BVDVS : 1270- 1278: vvtmw Kid-Lagll-L qgvpi POLG_BVDVS : 1376- 1385: scvss Kwq-LiymayL svdfm POLG_BVDVS : 1428- 1435: eeees Kg--Lkkfy-L lsgrl POLG_BVDVS : 1428- 1436: eeees Kg--LkkfylL sgrlr POLG_BVDVS : 1431- 1440: eskgl KkfyLlsgr-L rnlii POLG_BVDVS : 1432- 1440: skglk KfylLsgr--L rnlii POLG_BVDVS : 1432- 1440: skglk Kfy-Llsgr-L rnlii POLG_BVDVS : 1565- 1574: pilat KvkmLmvgn-L geevg POLG_BVDVS : 1567- 1574: latkv Km--Lmvgn-L geevg POLG_BVDVS : 1746- 1754: affdl Kn--LkgwsgL pifea POLG_BVDVS : 1837- 1845: eigrh Krv-Lvlip-L raaae POLG_BVDVS : 2264- 2272: vvetg Ka--LkqvagL ssaen POLG_BVDVS : 2679- 2689: mdseg KirnLsgnyiL dlihg POLG_BVDVS : 3082- 3091: elvdf KgtfLdrea-L ealsl POLG_BVDVS : 3292- 3300: gnlnt Kkm-Lnpgk-L seqld POLG_BVDVS : 3293- 3300: nlntk Km--Lnpgk-L seqld POLG_BVDVS : 3417- 3423: vldse Kh--Lveq--L vrdlk POLG_BVDVS : 3788- 3796: rtgfe KlanLnls--L stlgi POLG_HCVA : 245- 251: ppesr Kk--Leka--L lawav POLG_HCVA : 245- 252: ppesr Kk--Lekal-L awavi POLG_HCVA : 641- 650: agqvi Klv-LralrdL trvwn POLG_HCVA : 863- 871: ttive Ked-Lfhck-L ggnwt POLG_HCVA : 953- 961: gnttv KvhaLder--L gpmpc POLG_HCVA : 1376- 1383: scisn Kwq-Liyl--L ylife POLG_HCVA : 1376- 1385: scisn Kwq-LiyllyL ifevs POLG_HCVA : 1428- 1435: dneev Kg--Lkkff-L lssrv POLG_HCVA : 1428- 1436: dneev Kg--LkkfflL ssrvk POLG_HCVA : 1468- 1478: iygmp KligLvkaatL srnkh POLG_HCVA : 1565- 1574: pvlat KvkmLlvgn-L gteig POLG_HCVA : 1567- 1574: latkv Kml-Lvgn--L gteig POLG_HCVA : 1567- 1574: latkv Km--Llvgn-L gteig POLG_HCVA : 1746- 1754: affdl Kn--LkgwsgL pifea POLG_HCVA : 1837- 1845: eigrh Krv-Lvlip-L raaae POLG_HCVA : 1965- 1974: apevm KgedLgsey-L diagl POLG_HCVA : 2511- 2521: lpyaa KalkLfaptrL esvvi POLG_HCVA : 2679- 2689: vdseg KirqLssnyiL ellyk POLG_HCVA : 3062- 3068: mmkrg Ki--Lvva--L srvdt POLG_HCVA : 3082- 3091: kfvdy KgtfLtret-L ealsl POLG_HCVA : 3263- 3273: lvdeh KmkaLcggsgL skhne POLG_HCVA : 3265- 3273: dehkm Ka--LcggsgL skhne POLG_HCVA : 3355- 3364: rdkid KeenLqtpg-L hkklm POLG_HCVA : 3792- 3800: fekla Kln-Lsmst-L gvwtr POLG_HCVB : 245- 251: ppesr Kk--Leka--L lawav POLG_HCVB : 245- 252: ppesr Kk--Lekal-L awavi POLG_HCVB : 641- 650: agqvv Kla-LralrdL trvwn POLG_HCVB : 953- 961: gnttv KvhaLder--L gpmpc POLG_HCVB : 1213- 1221: isdyy KyktLlqy--L istvt POLG_HCVB : 1215- 1221: dyyky Kt--Llqy--L istvt POLG_HCVB : 1468- 1478: vygmp KlvgLvkaatL sknkh POLG_HCVB : 1565- 1574: pvlat KvkmLlvgn-L gtevg POLG_HCVB : 1567- 1574: latkv Kml-Lvgn--L gtevg POLG_HCVB : 1567- 1574: latkv Km--Llvgn-L gtevg POLG_HCVB : 1746- 1754: affdl Kn--LkgwsgL pifea POLG_HCVB : 1837- 1845: eigrh Krv-Lvlip-L raaae POLG_HCVB : 1965- 1974: apevm KgedLgpey-L diagl POLG_HCVB : 2679- 2689: vdseg KirqLssnyiL ellyk POLG_HCVB : 3062- 3068: mmrrg Ki--Lvia--L srvdn POLG_HCVB : 3082- 3091: kfvdy KgtfLtret-L ealsl POLG_HCVB : 3263- 3273: lveeh KmktLcpgssL rndne POLG_HCVB : 3265- 3273: eehkm Kt--LcpgssL rndne POLG_HCVB : 3355- 3364: rdkid KeenLqtpg-L hkklm POLG_HCVB : 3792- 3800: fekla Kln-Lsmsv-L gawtr RNI_AERHY : 3- 11: mk KivvLlgm--L lapwf RNI_AERHY : 3- 12: mk KivvLlgml-L apwfs RNI_ECOLI : 71- 80: tettn KadfLtvhg-L wpglp RNLE_LYCES : 114- 124: hayfk KaldLknqidL lsilq RNLX_LYCES : 118- 125: ldfkt Ksn-Llqn--L nnagi RNMC_MOMCH : 58- 66: pfdit KishLqsq--L ntlwp RNM_ASPSA : 148- 156: vvdlf Kt--LdsytaL sdagi RNRH_RHINI : 2- 10: m Kav-Lalat-L igstl RNRH_RHINI : 95- 104: sviks KdssLynsm-L tywps RNS1_ARATH : 2- 8: m Ki--Llas--L clisl RNS1_ARATH : 2- 10: m Kil-Laslc-L isllv RNS1_ARATH : 2- 10: m Ki--LlaslcL isllv RNS1_ARATH : 146- 153: lnlkq Ktn-Llga--L tkagi RNS2_ARATH : 233- 243: rkscp KyvsLpeytpL dgeam RNS2_NICAL : 136- 143: mtlrd Kfd-Llss--L rnhgi RNS2_SOLTU : 3- 10: ma Ksq-Lvsa--L fvfff RNS2_SOLTU : 139- 146: mrlke Kfd-Lltt--L rthgi RNS3_ARATH : 138- 145: lklkq Kan-Llha--L tnagi RNT2_ASPOR : 159- 167: gdylq KtvdLfkg--L dsyka RNT2_ASPOR : 165- 173: tvdlf Kg--LdsykaL akagi RNTR_TRIVI : 141- 149: adffs KtvsLfkt--L ptyqw RNTR_TRIVI : 147- 155: tvslf Kt--LptyqwL adagi T 20: 10.5102 81( 18) G-x(0,2)-L-x(1,3)-P Occurences: 81(18) POLG_BVDVN : 80- 85: rgpvs GiyLk--P gplfy POLG_BVDVN : 80- 87: rgpvs GiyLkpgP lfyqd POLG_BVDVN : 418- 424: nfsfa Gi-LmrgP cnfei POLG_BVDVN : 692- 698: itgvq Gh-LdckP efsya POLG_BVDVN : 794- 797: dnfef G--Lc--P cdakp POLG_BVDVN : 909- 914: fkese G--LphyP igkck POLG_BVDVN : 1275- 1282: kvdva GllLqcvP illlv POLG_BVDVN : 1344- 1349: desge GvyLf--P srqka POLG_BVDVN : 1675- 1681: nlehl GwiLrg-P avckk POLG_BVDVN : 2068- 2072: fldia G--Lki-P vdemk POLG_BVDVN : 2078- 2085: vdemk GnmLvfvP trnma POLG_BVDVN : 2338- 2342: avdll G--Ldw-P dpgnq POLG_BVDVN : 2937- 2944: gvgfn GayLgdeP nhral POLG_BVDVN : 3322- 3329: eplgc GvhLgtiP arrvk POLG_BVDVN : 3416- 3423: imssa GirLeklP ivraq POLG_BVDVN : 3912- 3918: igkee GnwLvk-P drlis POLG_BVDVN : 3927- 3932: isskt Gh-Lyi-P dkgft POLG_BVDVS : 80- 85: kgpvs GiyLk--P gplfy POLG_BVDVS : 80- 87: kgpvs GiyLkpgP lfyqd POLG_BVDVS : 418- 424: nfsfa Gv-LtrgP cnfei POLG_BVDVS : 692- 698: itgvq Gh-LdckP eysya POLG_BVDVS : 794- 797: ddfef G--Lc--P cdakp POLG_BVDVS : 909- 914: fqkse G--LphyP igkcr POLG_BVDVS : 1184- 1189: slrvt G--LtysP gvdaa POLG_BVDVS : 1275- 1282: kidla GllLqgvP illli POLG_BVDVS : 1344- 1349: desge GvyLf--P srqka POLG_BVDVS : 1585- 1591: dlehl GwiLrg-P avckk POLG_BVDVS : 1978- 1982: fldia G--Lki-P vdemk POLG_BVDVS : 1988- 1995: vdemk GnmLvfvP trnma POLG_BVDVS : 2248- 2252: avdll G--Ldw-P dpgnq POLG_BVDVS : 2847- 2854: gvgfr GayLgdeP nhrdl POLG_BVDVS : 3232- 3239: eplgc GvhLgtvP arrvk POLG_BVDVS : 3326- 3333: vmssa GirLeklP ivraq POLG_BVDVS : 3837- 3842: isskt Gh-Lyi-P dkgft POLG_HCVA : 29- 36: vydta GrpLfgnP sevhp POLG_HCVA : 72- 77: gdcrs GnhLg--P vsgiy POLG_HCVA : 187- 193: drmnk Gk-LkiaP rehek POLG_HCVA : 788- 793: mdddf GfgLc--P fdtsp POLG_HCVA : 790- 793: ddfgf G--Lc--P fdtsp POLG_HCVA : 905- 910: fkepy G--LphyP igkci POLG_HCVA : 1275- 1282: nldva GllLqcvP tllmv POLG_HCVA : 1344- 1349: dqtse GvyLf--P skqrt POLG_HCVA : 1585- 1591: dlehl GwvLrg-P avckk POLG_HCVA : 1978- 1982: yldia G--Lki-P veemk POLG_HCVA : 2248- 2252: avell G--Ldw-P dpgnq POLG_HCVA : 2847- 2854: gagyr GayLgekP nhkhl POLG_HCVA : 3192- 3196: eenkq Gs-La--P lfeel POLG_HCVA : 3327- 3334: vmtat GirLeklP vvraq POLG_HCVB : 29- 36: vydvt GrpLfgdP sevhp POLG_HCVB : 72- 77: gdcrs GnhLg--P vsgiy POLG_HCVB : 187- 193: drink Gk-LkiaP kehek POLG_HCVB : 788- 793: mgddf GfgLc--P ydtsp POLG_HCVB : 790- 793: ddfgf G--Lc--P ydtsp POLG_HCVB : 905- 910: fnepd G--LphyP igkci POLG_HCVB : 1275- 1282: nldia GllLqcvP tllmv POLG_HCVB : 1344- 1349: dqage GvyLf--P skqkt POLG_HCVB : 1585- 1591: dlehl GwvLrg-P avckk POLG_HCVB : 1966- 1971: pevmk GedLg--P eyldi POLG_HCVB : 1978- 1982: yldia G--Lki-P veemk POLG_HCVB : 2248- 2252: avell G--Ldw-P dpgnq POLG_HCVB : 2847- 2854: gagyc GayLgekP nhkhl POLG_HCVB : 3327- 3334: vmtat GirLeklP vvraq RNI_AERHY : 9- 14: ivvll GmlLa--P wfssa RNI_AERHY : 9- 14: ivvll Gm-Lla-P wfssa RNI_AERHY : 63- 66: gfvlh G--Lw--P qyqrg RNI_AERHY : 91- 94: eqefa G--Ly--P srfly RNI_ECOLI : 79- 82: fltvh G--Lw--P glpks RNLE_LYCES : 40- 43: dfgih G--Lw--P nnndg RNLE_LYCES : 182- 189: cvdgs GssLiecP ifpgg RNLX_LYCES : 40- 43: dfsih G--Lw--P nykdg RNMC_MOMCH : 35- 38: tftih G--Lw--P qgsgt RNMC_MOMCH : 42- 49: wpqgs GtsLtncP qgspf RNMC_MOMCH : 117- 121: nydii Ga-Lr--P haagp RNM_ASPSA : 52- 55: swtih G--Lw--P dncdg RNRH_RHINI : 63- 66: aftlh G--Lw--P dkcsg RNS1_ARATH : 66- 69: dfgih G--Lw--P nykdg RNS1_ARATH : 207- 214: cvdrs GsgLiecP vfphg RNS1_ARATH : 209- 214: drsgs G--LiecP vfphg RNS2_ARATH : 72- 75: qftih G--Lw--P dyndg RNS2_NICAL : 54- 57: nftih G--Lw--P dnhtt RNS2_SOLTU : 56- 59: nftih G--Lw--P dkkpm RNS3_ARATH : 58- 61: dfgih G--Lw--P nyktg RNT2_ASPOR : 71- 74: swtih G--Lw--P dncdg RNTR_TRIVI : 53- 56: swtih G--Lw--P dncdg Number of patterns evaluated by Pratt:631 Total running 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