------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file RNASE_T2_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RNASE_T2_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RNI_AERHY 215 RNI_ECOLI 268 RNLE_LYCES 205 RNLX_LYCES 213 RNMC_MOMCH 191 RNM_ASPSA 238 RNRH_RHINI 238 RNS1_ARATH 230 RNS2_ARATH 259 RNS2_NICAL 214 RNS2_SOLTU 223 RNS3_ARATH 222 RNT2_ASPOR 276 RNTR_TRIVI 234 Pratt run started at Thu Feb 6 21:06:51 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 14( 14) H-G-L-W-P 2: 16.6802 14( 14) K-H-G-x-C 3: 16.6802 14( 14) G-L-W-P 4: 12.5102 16( 14) H-G-x-C 5: 12.5102 15( 14) E-x(4)-G-x-C 6: 12.5102 15( 14) L-W-P 7: 12.5102 15( 14) K-x-G-x-C 8: 12.0102 16( 14) G-x(0,1)-L-x-P 9: 11.5102 18( 14) K-x(1,2)-G-x(1,2)-C 10: 11.5102 16( 14) F-x(3,4)-G-x(0,1)-L 11: 11.5102 22( 14) F-x(2,3)-H-x(1,2)-W 12: 11.0102 17( 14) F-x(3,4)-G-x(0,2)-L 13: 11.0102 20( 14) L-x(1,2)-P-x(2,4)-G 14: 11.0102 20( 14) G-x(1,2)-P-x(0,2)-D 15: 10.5102 18( 14) H-x(0,2)-G-x(0,2)-P 16: 10.5102 22( 14) E-x(0,2)-K-x(2,4)-T 17: 10.5102 19( 14) K-x(1,3)-L-x(3,5)-L 18: 10.5102 21( 14) G-x(0,2)-L-x(1,3)-P 19: 8.3401 24( 14) T-C 20: 8.3401 44( 14) S-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 23.1159 14( 14) H-G-L-W-P-[DGNQ] B 2: 19.8782 14( 14) K-H-G-[AT]-C C 3: 18.9458 14( 14) G-L-W-P-[DGNQ] D 4: 18.8111 14( 14) E-x(2)-[EK]-x-G-x-C-x-[ADEGNST]-x(4)-[ADGNQS] E 5: 16.6184 14( 14) F-x(3,4)-G-x(0,1)-L-x-[PQ]-[DGNQT] F 6: 16.4496 14( 14) F-x(3,4)-G-x(0,2)-L-x-[PT]-[DGNQ] G 7: 16.3819 14( 14) H-G-x(0,2)-P-[DGNQ]-x(3)-[GST] H 8: 15.7082 14( 14) H-G-[AT]-C I 9: 14.7758 15( 14) L-W-P-[DGNQ] J 10: 13.7344 19( 14) E-x(0,2)-K-x(2,4)-T-[CT] K 11: 12.7758 15( 14) G-x(0,2)-L-x(1,3)-P-[DGNQ] L 12: 12.5102 16( 14) H-G-x-C M 13: 12.5102 15( 14) K-x-G-x-C N 14: 12.1464 15( 14) K-x(1,3)-L-x(3,5)-L-x-[DGNPST] O 15: 11.5102 18( 14) K-x(1,2)-G-x(1,2)-C P 16: 11.5102 22( 14) F-x(2,3)-H-x(1,2)-W Q 17: 11.0102 20( 14) L-x(1,2)-P-x(2,4)-G R 18: 11.0102 20( 14) G-x(1,2)-P-x(0,2)-D S 19: 9.7609 34( 14) S-x-L-x-[ADENQST] T 20: 8.3401 24( 14) T-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 23.1159 14( 14) H-G-L-W-P-[DGNQ] Occurences: 14(14) RNI_AERHY : 62- 67: lgfvl HGLWPQ yqrgy RNI_ECOLI : 78- 83: dfltv HGLWPG lpksv RNLE_LYCES : 39- 44: adfgi HGLWPN nndgt RNLX_LYCES : 39- 44: edfsi HGLWPN ykdgk RNMC_MOMCH : 34- 39: rtfti HGLWPQ gsgts RNM_ASPSA : 51- 56: dswti HGLWPD ncdgs RNRH_RHINI : 62- 67: naftl HGLWPD kcsga RNS1_ARATH : 65- 70: adfgi HGLWPN ykdgt RNS2_ARATH : 71- 76: tqfti HGLWPD yndgs RNS2_NICAL : 53- 58: tnfti HGLWPD nhttm RNS2_SOLTU : 55- 60: nnfti HGLWPD kkpmr RNS3_ARATH : 57- 62: adfgi HGLWPN yktgg RNT2_ASPOR : 70- 75: dswti HGLWPD ncdgs RNTR_TRIVI : 52- 57: dswti HGLWPD ncdgs B 2: 19.8782 14( 14) K-H-G-[AT]-C Occurences: 14(14) RNI_AERHY : 105- 109: rhewe KHGTC sglsq RNI_ECOLI : 155- 159: ryeya KHGAC fgfdp RNLE_LYCES : 96- 100: shewe KHGTC aesvl RNLX_LYCES : 96- 100: shewl KHGTC salnq RNMC_MOMCH : 88- 92: shewt KHGTC sestf RNM_ASPSA : 114- 118: ehewn KHGTC intid RNRH_RHINI : 124- 128: shews KHGTC vstyd RNS1_ARATH : 122- 126: ehewe KHGTC sesvi RNS2_ARATH : 132- 136: ghewe KHGTC sspvf RNS2_NICAL : 112- 116: kdeyv KHGTC csdkf RNS2_SOLTU : 115- 119: kdqyk KHGTC clpry RNS3_ARATH : 114- 118: thewe KHGTC aesel RNT2_ASPOR : 131- 135: ehewn KHGTC intie RNTR_TRIVI : 113- 117: ehewg KHGTC ittld C 3: 18.9458 14( 14) G-L-W-P-[DGNQ] Occurences: 14(14) RNI_AERHY : 63- 67: gfvlh GLWPQ yqrgy RNI_ECOLI : 79- 83: fltvh GLWPG lpksv RNLE_LYCES : 40- 44: dfgih GLWPN nndgt RNLX_LYCES : 40- 44: dfsih GLWPN ykdgk RNMC_MOMCH : 35- 39: tftih GLWPQ gsgts RNM_ASPSA : 52- 56: swtih GLWPD ncdgs RNRH_RHINI : 63- 67: aftlh GLWPD kcsga RNS1_ARATH : 66- 70: dfgih GLWPN ykdgt RNS2_ARATH : 72- 76: qftih GLWPD yndgs RNS2_NICAL : 54- 58: nftih GLWPD nhttm RNS2_SOLTU : 56- 60: nftih GLWPD kkpmr RNS3_ARATH : 58- 62: dfgih GLWPN yktgg RNT2_ASPOR : 71- 75: swtih GLWPD ncdgs RNTR_TRIVI : 53- 57: swtih GLWPD ncdgs D 4: 18.8111 14( 14) E-x(2)-[EK]-x-G-x-C-x-[ADEGNST]-x(4)-[ADGNQS] Occurences: 14(14) RNI_AERHY : 102- 116: flyrh EweKhGtCsGlsqhD fhqla RNI_ECOLI : 152- 166: clery EyaKhGaCfGfdpdA yfgtm RNLE_LYCES : 93- 107: tfwsh EweKhGtCaEsvltN qhayf RNLX_LYCES : 93- 107: kfwsh EwlKhGtCsAlnqhA yfqta RNMC_MOMCH : 85- 99: qfwsh EwtKhGtCsEstfnQ aayfk RNM_ASPSA : 111- 125: sfweh EwnKhGtCiNtidpS cytdy RNRH_RHINI : 121- 135: vfwsh EwsKhGtCvStydpD cydny RNS1_ARATH : 119- 133: afweh EweKhGtCsEsvidQ heyfq RNS2_ARATH : 129- 143: sfwgh EweKhGtCsSpvfhD eynyf RNS2_NICAL : 180- 194: csrlr ElkEiGiCfDetvkN vidcp RNS2_SOLTU : 187- 201: iqgvl ElyEiGiCfTpeadS lfpcr RNS3_ARATH : 111- 125: kfwth EweKhGtCaEseldQ hdyfe RNT2_ASPOR : 128- 142: efweh EwnKhGtCiNtiepS cykdy RNTR_TRIVI : 110- 124: sfweh EwgKhGtCiTtldpG cyddy E 5: 16.6184 14( 14) F-x(3,4)-G-x(0,1)-L-x-[PQ]-[DGNQT] Occurences: 14(14) RNI_AERHY : 59- 67: srqlg Fvlh-G-LwPQ yqrgy RNI_ECOLI : 74- 83: tnkad FltvhG-LwPG lpksv RNLE_LYCES : 36- 44: kpaad Fgih-G-LwPN nndgt RNLX_LYCES : 36- 44: kpded Fsih-G-LwPN ykdgk RNMC_MOMCH : 31- 39: sglrt Ftih-G-LwPQ gsgts RNM_ASPSA : 23- 33: eascc FnspgGsLlQT qfwdy RNRH_RHINI : 59- 67: gpdna Ftlh-G-LwPD kcsga RNS1_ARATH : 62- 70: kpaad Fgih-G-LwPN ykdgt RNS2_ARATH : 68- 76: daptq Ftih-G-LwPD yndgs RNS2_NICAL : 50- 58: rtptn Ftih-G-LwPD nhttm RNS2_SOLTU : 52- 60: ippnn Ftih-G-LwPD kkpmr RNS3_ARATH : 54- 62: kpaad Fgih-G-LwPN yktgg RNT2_ASPOR : 42- 52: adscc FnspgGaLlQT qfwdt RNTR_TRIVI : 25- 34: qdtcc Fips-GqLlQT qfwdt F 6: 16.4496 14( 14) F-x(3,4)-G-x(0,2)-L-x-[PT]-[DGNQ] Occurences: 14(14) RNI_AERHY : 59- 67: srqlg Fvlh-G--LwPQ yqrgy RNI_ECOLI : 74- 83: tnkad FltvhG--LwPG lpksv RNLE_LYCES : 36- 44: kpaad Fgih-G--LwPN nndgt RNLX_LYCES : 36- 44: kpded Fsih-G--LwPN ykdgk RNMC_MOMCH : 31- 39: sglrt Ftih-G--LwPQ gsgts RNM_ASPSA : 23- 34: eascc FnspgGslLqTQ fwdyd RNRH_RHINI : 59- 67: gpdna Ftlh-G--LwPD kcsga RNS1_ARATH : 62- 70: kpaad Fgih-G--LwPN ykdgt RNS2_ARATH : 68- 76: daptq Ftih-G--LwPD yndgs RNS2_NICAL : 50- 58: rtptn Ftih-G--LwPD nhttm RNS2_SOLTU : 52- 60: ippnn Ftih-G--LwPD kkpmr RNS3_ARATH : 54- 62: kpaad Fgih-G--LwPN yktgg RNT2_ASPOR : 42- 53: adscc FnspgGalLqTQ fwdtn RNTR_TRIVI : 25- 35: qdtcc Fips-GqlLqTQ fwdtd G 7: 16.3819 14( 14) H-G-x(0,2)-P-[DGNQ]-x(3)-[GST] Occurences: 14(14) RNI_AERHY : 62- 71: lgfvl HGlwPQyqrG ypssc RNI_ECOLI : 78- 87: dfltv HGlwPGlpkS vaarg RNLE_LYCES : 39- 48: adfgi HGlwPNnndG typsn RNLX_LYCES : 39- 48: edfsi HGlwPNykdG kwpqn RNMC_MOMCH : 34- 43: rtfti HGlwPQgsgT sltnc RNM_ASPSA : 51- 60: dswti HGlwPDncdG syqey RNRH_RHINI : 62- 71: naftl HGlwPDkcsG ayaps RNS1_ARATH : 65- 74: adfgi HGlwPNykdG typsn RNS2_ARATH : 71- 80: tqfti HGlwPDyndG swpsc RNS2_NICAL : 53- 62: tnfti HGlwPDnhtT mlnyc RNS2_SOLTU : 149- 158: ttlrt HGitPGtkhT fkkiq RNS3_ARATH : 57- 66: adfgi HGlwPNyktG gwpqn RNT2_ASPOR : 70- 79: dswti HGlwPDncdG sygqf RNTR_TRIVI : 52- 61: dswti HGlwPDncdG sfpqt H 8: 15.7082 14( 14) H-G-[AT]-C Occurences: 14(14) RNI_AERHY : 106- 109: hewek HGTC sglsq RNI_ECOLI : 156- 159: yeyak HGAC fgfdp RNLE_LYCES : 97- 100: hewek HGTC aesvl RNLX_LYCES : 97- 100: hewlk HGTC salnq RNMC_MOMCH : 89- 92: hewtk HGTC sestf RNM_ASPSA : 115- 118: hewnk HGTC intid RNRH_RHINI : 125- 128: hewsk HGTC vstyd RNS1_ARATH : 123- 126: hewek HGTC sesvi RNS2_ARATH : 133- 136: hewek HGTC sspvf RNS2_NICAL : 113- 116: deyvk HGTC csdkf RNS2_SOLTU : 116- 119: dqykk HGTC clpry RNS3_ARATH : 115- 118: hewek HGTC aesel RNT2_ASPOR : 132- 135: hewnk HGTC intie RNTR_TRIVI : 114- 117: hewgk HGTC ittld I 9: 14.7758 15( 14) L-W-P-[DGNQ] Occurences: 15(14) RNI_AERHY : 64- 67: fvlhg LWPQ yqrgy RNI_ECOLI : 80- 83: ltvhg LWPG lpksv RNLE_LYCES : 41- 44: fgihg LWPN nndgt RNLX_LYCES : 41- 44: fsihg LWPN ykdgk RNMC_MOMCH : 36- 39: ftihg LWPQ gsgts RNMC_MOMCH : 69- 72: sqlnt LWPN vlran RNM_ASPSA : 53- 56: wtihg LWPD ncdgs RNRH_RHINI : 64- 67: ftlhg LWPD kcsga RNS1_ARATH : 67- 70: fgihg LWPN ykdgt RNS2_ARATH : 73- 76: ftihg LWPD yndgs RNS2_NICAL : 55- 58: ftihg LWPD nhttm RNS2_SOLTU : 57- 60: ftihg LWPD kkpmr RNS3_ARATH : 59- 62: fgihg LWPN yktgg RNT2_ASPOR : 72- 75: wtihg LWPD ncdgs RNTR_TRIVI : 54- 57: wtihg LWPD ncdgs J 10: 13.7344 19( 14) E-x(0,2)-K-x(2,4)-T-[CT] Occurences: 19(14) RNI_AERHY : 102- 109: flyrh EweKhg--TC sglsq RNI_AERHY : 104- 109: yrhew E--Khg--TC sglsq RNI_ECOLI : 211- 220: kswgk EnvKavklTC qgnpa RNLE_LYCES : 93- 100: tfwsh EweKhg--TC aesvl RNLE_LYCES : 95- 100: wshew E--Khg--TC aesvl RNLX_LYCES : 93- 100: kfwsh EwlKhg--TC salnq RNMC_MOMCH : 85- 92: qfwsh EwtKhg--TC sestf RNM_ASPSA : 111- 118: sfweh EwnKhg--TC intid RNRH_RHINI : 121- 128: vfwsh EwsKhg--TC vstyd RNS1_ARATH : 119- 126: afweh EweKhg--TC sesvi RNS1_ARATH : 121- 126: wehew E--Khg--TC sesvi RNS2_ARATH : 129- 136: sfwgh EweKhg--TC sspvf RNS2_ARATH : 131- 136: wghew E--Khg--TC sspvf RNS2_NICAL : 109- 116: afwkd EyvKhg--TC csdkf RNS2_SOLTU : 138- 145: amrlk E--KfdllTT lrthg RNS3_ARATH : 111- 118: kfwth EweKhg--TC aesel RNS3_ARATH : 113- 118: wthew E--Khg--TC aesel RNT2_ASPOR : 128- 135: efweh EwnKhg--TC intie RNTR_TRIVI : 110- 117: sfweh EwgKhg--TC ittld K 11: 12.7758 15( 14) G-x(0,2)-L-x(1,3)-P-[DGNQ] Occurences: 15(14) RNI_AERHY : 63- 67: gfvlh G--Lw--PQ yqrgy RNI_ECOLI : 79- 83: fltvh G--Lw--PG lpksv RNLE_LYCES : 40- 44: dfgih G--Lw--PN nndgt RNLX_LYCES : 40- 44: dfsih G--Lw--PN ykdgk RNMC_MOMCH : 35- 39: tftih G--Lw--PQ gsgts RNMC_MOMCH : 42- 50: wpqgs GtsLtncPQ gspfd RNM_ASPSA : 52- 56: swtih G--Lw--PD ncdgs RNRH_RHINI : 63- 67: aftlh G--Lw--PD kcsga RNS1_ARATH : 66- 70: dfgih G--Lw--PN ykdgt RNS2_ARATH : 72- 76: qftih G--Lw--PD yndgs RNS2_NICAL : 54- 58: nftih G--Lw--PD nhttm RNS2_SOLTU : 56- 60: nftih G--Lw--PD kkpmr RNS3_ARATH : 58- 62: dfgih G--Lw--PN yktgg RNT2_ASPOR : 71- 75: swtih G--Lw--PD ncdgs RNTR_TRIVI : 53- 57: swtih G--Lw--PD ncdgs L 12: 12.5102 16( 14) H-G-x-C Occurences: 16(14) RNI_AERHY : 106- 109: hewek HGtC sglsq RNI_ECOLI : 156- 159: yeyak HGaC fgfdp RNLE_LYCES : 97- 100: hewek HGtC aesvl RNLX_LYCES : 97- 100: hewlk HGtC salnq RNMC_MOMCH : 89- 92: hewtk HGtC sestf RNM_ASPSA : 115- 118: hewnk HGtC intid RNRH_RHINI : 125- 128: hewsk HGtC vstyd RNS1_ARATH : 123- 126: hewek HGtC sesvi RNS1_ARATH : 218- 221: cpvfp HGkC gaeie RNS2_ARATH : 133- 136: hewek HGtC sspvf RNS2_NICAL : 113- 116: deyvk HGtC csdkf RNS2_SOLTU : 116- 119: dqykk HGtC clpry RNS3_ARATH : 115- 118: hewek HGtC aesel RNS3_ARATH : 210- 213: cpvmp HGrC dsrvq RNT2_ASPOR : 132- 135: hewnk HGtC intie RNTR_TRIVI : 114- 117: hewgk HGtC ittld M 13: 12.5102 15( 14) K-x-G-x-C Occurences: 15(14) RNI_AERHY : 105- 109: rhewe KhGtC sglsq RNI_ECOLI : 155- 159: ryeya KhGaC fgfdp RNLE_LYCES : 96- 100: shewe KhGtC aesvl RNLX_LYCES : 96- 100: shewl KhGtC salnq RNMC_MOMCH : 19- 23: vcsfq KsGsC pgsgl RNMC_MOMCH : 88- 92: shewt KhGtC sestf RNM_ASPSA : 114- 118: ehewn KhGtC intid RNRH_RHINI : 124- 128: shews KhGtC vstyd RNS1_ARATH : 122- 126: ehewe KhGtC sesvi RNS2_ARATH : 132- 136: ghewe KhGtC sspvf RNS2_NICAL : 112- 116: kdeyv KhGtC csdkf RNS2_SOLTU : 115- 119: kdqyk KhGtC clpry RNS3_ARATH : 114- 118: thewe KhGtC aesel RNT2_ASPOR : 131- 135: ehewn KhGtC intie RNTR_TRIVI : 113- 117: ehewg KhGtC ittld N 14: 12.1464 15( 14) K-x(1,3)-L-x(3,5)-L-x-[DGNPST] Occurences: 15(14) RNI_AERHY : 3- 14: mk KivvLlgml-LaP wfssa RNI_ECOLI : 71- 82: tettn KadfLtvhg-LwP glpks RNLE_LYCES : 114- 126: hayfk KaldLknqidLlS ilqga RNLX_LYCES : 118- 127: ldfkt Ksn-Llqn--LnN agikp RNMC_MOMCH : 58- 68: pfdit KishLqsq--LnT lwpnv RNM_ASPSA : 148- 158: vvdlf Kt--LdsytaLsD agitp RNRH_RHINI : 2- 12: m Kav-Lalat-LiG stlas RNS1_ARATH : 2- 12: m Kil-Laslc-LiS llvil RNS1_ARATH : 2- 12: m Ki--LlaslcLiS llvil RNS2_ARATH : 233- 245: rkscp KyvsLpeytpLdG eamvl RNS2_NICAL : 136- 145: mtlrd Kfd-Llss--LrN hgisr RNS2_SOLTU : 139- 148: mrlke Kfd-Lltt--LrT hgitp RNS3_ARATH : 138- 147: lklkq Kan-Llha--LtN agikp RNT2_ASPOR : 159- 169: gdylq KtvdLfkg--LdS ykala RNTR_TRIVI : 141- 151: adffs KtvsLfkt--LpT yqwla RNTR_TRIVI : 147- 157: tvslf Kt--LptyqwLaD agitp O 15: 11.5102 18( 14) K-x(1,2)-G-x(1,2)-C Occurences: 18(14) RNI_AERHY : 105- 109: rhewe Kh-Gt-C sglsq RNI_ECOLI : 155- 159: ryeya Kh-Ga-C fgfdp RNLE_LYCES : 96- 100: shewe Kh-Gt-C aesvl RNLX_LYCES : 96- 100: shewl Kh-Gt-C salnq RNMC_MOMCH : 19- 23: vcsfq Ks-Gs-C pgsgl RNMC_MOMCH : 88- 92: shewt Kh-Gt-C sestf RNMC_MOMCH : 146- 152: kakfg KfpGlrC rtdpq RNM_ASPSA : 114- 118: ehewn Kh-Gt-C intid RNRH_RHINI : 124- 128: shews Kh-Gt-C vstyd RNS1_ARATH : 122- 126: ehewe Kh-Gt-C sesvi RNS2_ARATH : 132- 136: ghewe Kh-Gt-C sspvf RNS2_NICAL : 112- 116: kdeyv Kh-Gt-C csdkf RNS2_NICAL : 112- 117: kdeyv Kh-GtcC sdkfd RNS2_NICAL : 182- 187: rlrel KeiGi-C fdetv RNS2_SOLTU : 114- 119: wkdqy KkhGt-C clpry RNS2_SOLTU : 114- 120: wkdqy KkhGtcC lpryn RNS2_SOLTU : 115- 119: kdqyk Kh-Gt-C clpry RNS2_SOLTU : 115- 120: kdqyk Kh-GtcC lpryn RNS3_ARATH : 114- 118: thewe Kh-Gt-C aesel RNT2_ASPOR : 131- 135: ehewn Kh-Gt-C intie RNTR_TRIVI : 113- 117: ehewg Kh-Gt-C ittld P 16: 11.5102 22( 14) F-x(2,3)-H-x(1,2)-W Occurences: 22(14) RNI_AERHY : 59- 65: srqlg Fvl-HglW pqyqr RNI_AERHY : 97- 103: lypsr FlyrHe-W ekhgt RNI_ECOLI : 74- 81: tnkad FltvHglW pglpk RNLE_LYCES : 36- 42: kpaad Fgi-HglW pnnnd RNLE_LYCES : 89- 94: gsgst Fws-He-W ekhgt RNLX_LYCES : 36- 42: kpded Fsi-HglW pnykd RNLX_LYCES : 89- 94: sdglk Fws-He-W lkhgt RNMC_MOMCH : 31- 37: sglrt Fti-HglW pqgsg RNMC_MOMCH : 81- 86: annqq Fws-He-W tkhgt RNM_ASPSA : 107- 112: dedes Fwe-He-W nkhgt RNRH_RHINI : 59- 65: gpdna Ftl-HglW pdkcs RNRH_RHINI : 117- 122: gnnnv Fws-He-W skhgt RNS1_ARATH : 62- 68: kpaad Fgi-HglW pnykd RNS1_ARATH : 115- 120: gsgea Fwe-He-W ekhgt RNS2_ARATH : 68- 74: daptq Fti-HglW pdynd RNS2_ARATH : 125- 130: ggkgs Fwg-He-W ekhgt RNS2_NICAL : 50- 56: rtptn Fti-HglW pdnht RNS2_SOLTU : 52- 58: ippnn Fti-HglW pdkkp RNS3_ARATH : 54- 60: kpaad Fgi-HglW pnykt RNS3_ARATH : 107- 112: ndgmk Fwt-He-W ekhgt RNT2_ASPOR : 124- 129: gddee Fwe-He-W nkhgt RNTR_TRIVI : 106- 111: gndes Fwe-He-W gkhgt Q 17: 11.0102 20( 14) L-x(1,2)-P-x(2,4)-G Occurences: 20(14) RNI_AERHY : 64- 71: fvlhg Lw-PqyqrG ypssc RNI_AERHY : 158- 166: gqcqr LagPgqhhG glrrr RNI_ECOLI : 249- 255: sansf LpqPhp--G ncgkt RNLE_LYCES : 41- 48: fgihg Lw-PnnndG typsn RNLE_LYCES : 79- 86: qnwpt LacPsgs-G stfws RNLX_LYCES : 41- 48: fsihg Lw-PnykdG kwpqn RNLX_LYCES : 79- 86: knwps LacPssd-G lkfws RNMC_MOMCH : 36- 42: ftihg Lw-Pqgs-G tsltn RNMC_MOMCH : 119- 125: diiga Lr-Phaa-G pngrt RNM_ASPSA : 53- 60: wtihg Lw-PdncdG syqey RNRH_RHINI : 64- 71: ftlhg Lw-PdkcsG ayaps RNS1_ARATH : 67- 74: fgihg Lw-PnykdG typsn RNS1_ARATH : 105- 112: kswpt LacPsgs-G eafwe RNS2_ARATH : 73- 80: ftihg Lw-PdyndG swpsc RNS2_NICAL : 17- 22: illca Ls-Piy--G afeym RNS2_SOLTU : 17- 22: vfffs Ls-Piy--G dfdym RNS3_ARATH : 59- 66: fgihg Lw-PnyktG gwpqn RNS3_ARATH : 97- 104: rewpt LscPsnd-G mkfwt RNT2_ASPOR : 72- 79: wtihg Lw-PdncdG sygqf RNTR_TRIVI : 54- 61: wtihg Lw-PdncdG sfpqt R 18: 11.0102 20( 14) G-x(1,2)-P-x(0,2)-D Occurences: 20(14) RNI_AERHY : 205- 208: elpsc Gq-P--D fllrt RNI_ECOLI : 161- 165: hgacf GfdP--D ayfgt RNLE_LYCES : 30- 35: cyptt Gk-PaaD fgihg RNLX_LYCES : 30- 33: cyptt Gk-P--D edfsi RNLX_LYCES : 30- 35: cyptt Gk-PdeD fsihg RNMC_MOMCH : 51- 55: tncpq Gs-Pf-D itkis RNM_ASPSA : 52- 56: swtih GlwP--D ncdgs RNM_ASPSA : 160- 166: alsda GitPseD atykl RNRH_RHINI : 52- 56: mqwap GygP--D naftl RNRH_RHINI : 63- 67: aftlh GlwP--D kcsga RNS1_ARATH : 56- 61: cypns Gk-PaaD fgihg RNS1_ARATH : 157- 161: altka GinP--D gksys RNS2_ARATH : 72- 76: qftih GlwP--D yndgs RNS2_NICAL : 54- 58: nftih GlwP--D nhttm RNS2_SOLTU : 56- 60: nftih GlwP--D kkpmr RNS3_ARATH : 48- 53: cypqt Gk-PaaD fgihg RNS3_ARATH : 149- 153: altna GikP--D dkfye RNS3_ARATH : 149- 154: altna GikPd-D kfyem RNT2_ASPOR : 71- 75: swtih GlwP--D ncdgs RNT2_ASPOR : 177- 181: alaka GivP--D sskty RNTR_TRIVI : 53- 57: swtih GlwP--D ncdgs RNTR_TRIVI : 159- 163: wlada GitP--D gsksy S 19: 9.7609 34( 14) S-x-L-x-[ADENQST] Occurences: 34(14) RNI_AERHY : 110- 114: khgtc SgLsQ hdfhq RNI_AERHY : 122- 126: fhqla SdLrQ kredp RNI_ECOLI : 247- 251: plsan SfLpQ phpgn RNLE_LYCES : 66- 70: dqsqi SdLiS smqqn RNLE_LYCES : 103- 107: gtcae SvLtN qhayf RNLE_LYCES : 169- 173: dqsgn SqLyQ vyicv RNLE_LYCES : 183- 187: vdgsg SsLiE cpifp RNLX_LYCES : 58- 62: ncdre SsLdE sefsd RNLX_LYCES : 66- 70: desef SdLiS tmekn RNLX_LYCES : 101- 105: khgtc SaLnQ hayfq RNLX_LYCES : 119- 123: dfktk SnLlQ nlnna RNMC_MOMCH : 26- 30: gscpg SgLrT ftihg RNMC_MOMCH : 60- 64: ditki ShLqS qlntl RNMC_MOMCH : 64- 68: ishlq SqLnT lwpnv RNMC_MOMCH : 161- 165: pqtkv SyLvQ vvacf RNMC_MOMCH : 175- 179: faqdg StLiD ctrdt RNM_ASPSA : 29- 33: nspgg SlLqT qfwdy RNM_ASPSA : 77- 81: ysnit SiLeA qdrte RNRH_RHINI : 13- 17: atlig StLaS scsst RNRH_RHINI : 97- 101: ikskd SsLyN smlty RNS1_ARATH : 92- 96: dssti SdLlT smkks RNS1_ARATH : 194- 198: dgsgn SqLyQ vylcv RNS1_ARATH : 208- 212: vdrsg SgLiE cpvfp RNS2_ARATH : 97- 101: kekei StLmD gleky RNS2_NICAL : 4- 8: msk SqLtS vffil RNS2_NICAL : 141- 145: kfdll SsLrN hgisr RNS2_NICAL : 176- 180: pnltc SrLrE lkeig RNS2_SOLTU : 4- 8: mak SqLvS alfvf RNS2_SOLTU : 83- 87: kftpg SvLdA ldhhw RNS3_ARATH : 84- 88: ddlrv SdLmS dlqre RNS3_ARATH : 121- 125: gtcae SeLdQ hdyfe RNS3_ARATH : 186- 190: dsshn SqLyQ iylcv RNT2_ASPOR : 193- 197: rseie SaLaA ihdgk RNTR_TRIVI : 175- 179: lddiq SaLsQ qhgae T 20: 8.3401 24( 14) T-C Occurences: 24(14) RNI_AERHY : 108- 109: wekhg TC sglsq RNI_AERHY : 191- 192: gtdav TC sdemq RNI_ECOLI : 219- 220: kavkl TC qgnpa RNLE_LYCES : 99- 100: wekhg TC aesvl RNLX_LYCES : 99- 100: wlkhg TC salnq RNMC_MOMCH : 91- 92: wtkhg TC sestf RNMC_MOMCH : 184- 185: dctrd TC ganfi RNM_ASPSA : 4- 5: tid TC ssdsp RNM_ASPSA : 117- 118: wnkhg TC intid RNRH_RHINI : 34- 35: sansd TC cspey RNRH_RHINI : 127- 128: wskhg TC vstyd RNS1_ARATH : 125- 126: wekhg TC sesvi RNS2_ARATH : 135- 136: wekhg TC sspvf RNS2_NICAL : 115- 116: yvkhg TC csdkf RNS2_NICAL : 174- 175: gfpnl TC srlre RNS2_NICAL : 203- 204: cpnpk TC kptnk RNS2_SOLTU : 118- 119: ykkhg TC clpry RNS3_ARATH : 117- 118: wekhg TC aesel RNT2_ASPOR : 134- 135: wnkhg TC intie RNTR_TRIVI : 4- 5: ask TC psntp RNTR_TRIVI : 22- 23: tvvqd TC cfips RNTR_TRIVI : 66- 67: gsfpq TC dasra RNTR_TRIVI : 116- 117: wgkhg TC ittld RNTR_TRIVI : 223- 224: dgaks TC pddvy Number of patterns evaluated by Pratt:586 Total running time: 1 seconds