------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file RING_HYDROXYL_ALPHA PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RING_HYDROXYL_ALPHA.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BED1_PSEPU 450 BENA_ACICA 461 BNZA_PSEPU 448 BPHA_BURCE 459 NDOB_PSEPU 449 TOD1_PSEPU 450 XYLX_PSEPU 454 Pratt run started at Thu Feb 6 21:06:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 36.5305 7( 7) G-N-x(5)-C-x(2)-H-G-W-x(5)-G-x-L-x(0,2)-V 2: 36.5305 7( 7) G-x(1,2)-K-x(3,4)-C-x(2)-H-G-W-x(5)-G-x-L-x(2)-V 3: 31.8604 7( 7) K-x(3,4)-C-x(2)-H-G-W-x(5)-G-x-L-x(0,2)-V 4: 31.3604 7( 7) C-x(2)-H-G-W-x(5)-G-x-L-x(0,2)-V-x(0,2)-P 5: 28.6904 7( 7) N-W-K-x(3)-E-x(3,4)-D-x-Y-H 6: 27.1904 7( 7) H-G-W-x(5)-G-x-L-x(0,2)-V-x(0,2)-P 7: 25.0203 7( 7) L-x(3)-E-x(4)-F-x(3)-W-x(2)-L-x-H 8: 24.5203 7( 7) W-K-x(3)-E-x(3,4)-D-x-Y-H 9: 24.5203 7( 7) L-x(3)-E-x(3,4)-F-x(3)-W-x(2)-L-x-H 10: 24.5203 7( 7) L-x(2,3)-E-x(4)-F-x(3)-W-x(2)-L-x-H 11: 24.0203 7( 7) N-A-x(4)-C-S-x(0,1)-H-x(0,1)-G 12: 24.0203 7( 7) L-x(2,3)-E-x(3,4)-F-x(3)-W-x(2)-L-x-H 13: 23.5203 7( 7) I-x(1,2)-R-x(3)-G-x(1,3)-A-x(4)-C-x(3)-G 14: 23.5203 11( 7) L-x(2,3)-E-x(2,4)-F-x(3)-W-x(2)-L-x-H 15: 23.0203 8( 7) G-W-x(5)-G-x-L-x(0,2)-V-x(0,2)-P 16: 23.0203 7( 7) L-x(3)-E-x(4)-F-x(3)-W-x(0,2)-L-x(1,3)-H 17: 20.8503 7( 7) E-x(4)-F-x(3)-W-x(2)-L-x-H 18: 20.3503 7( 7) K-x(3)-E-x(3,4)-D-x-Y-H 19: 19.8503 10( 7) K-x(1,2)-I-x(2,3)-N-W-x(3)-A 20: 19.8503 7( 7) K-x(5)-N-W-x(2,3)-A-x(0,1)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 109.2411 7( 7) L-[FY]-[DEQ]-x-E-[LM]-[EK]-x-[IV]-F-[AEG]-x-[NS]-W-x(0,2)-L-x(1,3)-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES] B 2: 103.5172 7( 7) L-x(3)-E-x(3,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] C 3: 103.5172 7( 7) L-x(2,3)-E-x(4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] D 4: 103.0172 7( 7) L-x(2,3)-E-x(3,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] E 5: 102.5172 11( 7) L-x(2,3)-E-x(2,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] F 6: 100.7306 7( 7) L-x(3)-E-x(4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES] G 7: 100.5095 7( 7) E-x(4)-F-x(3)-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL]-x-[AV]-[FM] H 8: 67.7824 7( 7) G-N-x(2)-[AGT]-[FHY]-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] I 9: 65.1735 7( 7) G-N-x(3)-[FHY]-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] J 10: 62.5785 7( 7) G-N-x(4)-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] K 11: 59.4066 7( 7) G-N-x(5)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] L 12: 59.4066 7( 7) G-x(1,2)-K-x(3,4)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(2)-V-x(2)-[EP]-x-[DEG] M 13: 55.9959 7( 7) C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(0,2)-P-x-[DEG]-x-[DEG]-x(2)-[ACDG] N 14: 54.7365 7( 7) K-x(3,4)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] O 15: 51.7809 7( 7) K-x(1,2)-I-x(2,3)-N-W-x(3)-A-[EH]-[ENQ]-x(3)-[DP]-x(3)-[ADV]-x(2)-T-x(3)-[GS]-x(3)-[AGI]-x(4)-[DENS]-x(3)-[AEGS]-x(2)-[AQ]-x-[IPV] P 16: 51.5486 7( 7) K-x(3,4)-C-x-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Q 17: 48.9208 7( 7) N-W-K-x(2)-[AV]-E-x(3,4)-D-x-Y-H-[AV]-[GS]-x-[TV]-x(4)-[AGL]-x(2)-[AGQT]-[EGQ] R 18: 48.3641 7( 7) K-x(3,4)-C-x(2)-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] S 19: 47.3747 7( 7) K-x-[IV]-[FI]-x-[ACG]-N-W-x(2,3)-A-x(0,1)-E-[NQS]-x(2)-[GPS]-[DEN]-x(2)-[DH]-x(3)-T-x(3)-[RS] T 20: 45.5259 7( 7) I-x(1,2)-R-[ANQS]-x-[ADN]-G-x(1,3)-A-x-[AILV]-x-[ATV]-C-[RS]-[HY]-[HR]-G-x-[AQT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 109.2411 7( 7) L-[FY]-[DEQ]-x-E-[LM]-[EK]-x-[IV]-F-[AEG]-x-[NS]-W-x(0,2)-L-x(1,3)-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES] Occurences: 7(7) BED1_PSEPU : 41- 88: ytded LYQlELErVFArSWllLg--HEThIrkpGDYfTTyMGeDPVVVVRQkDaS iavfl BED1_PSEPU : 41- 88: ytded LYQlELErVFArSWl-Llg-HEThIrkpGDYfTTyMGeDPVVVVRQkDaS iavfl BED1_PSEPU : 41- 88: ytded LYQlELErVFArSW--LllgHEThIrkpGDYfTTyMGeDPVVVVRQkDaS iavfl BENA_ACICA : 40- 87: ftdqa LFDlEMKyIFEgNWvyLa--HESqIpnnNDYyTTyIGrQPILIARNpNgE lnami BNZA_PSEPU : 41- 88: ytded LYQlELErVFArSWllLg--HETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl BNZA_PSEPU : 41- 88: ytded LYQlELErVFArSWl-Llg-HETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl BNZA_PSEPU : 41- 88: ytded LYQlELErVFArSW--LllgHETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl BPHA_BURCE : 45- 92: yadqs LYElELErVFGrSWllLg--HEShVpetGDFlATyMGeDPVVMVRQkDkS ikvfl BPHA_BURCE : 45- 92: yadqs LYElELErVFGrSWl-Llg-HEShVpetGDFlATyMGeDPVVMVRQkDkS ikvfl BPHA_BURCE : 45- 92: yadqs LYElELErVFGrSW--LllgHEShVpetGDFlATyMGeDPVVMVRQkDkS ikvfl NDOB_PSEPU : 26- 73: hgdee LFQhELKtIFArNWlfLt--HDSlIpapGDYvTAkMGiDEVIVSRQnDgS irafl NDOB_PSEPU : 26- 73: hgdee LFQhELKtIFArNW--LfltHDSlIpapGDYvTAkMGiDEVIVSRQnDgS irafl TOD1_PSEPU : 41- 88: ytded LYQlELErVFArSWllLg--HETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl TOD1_PSEPU : 41- 88: ytded LYQlELErVFArSWl-Llg-HETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl TOD1_PSEPU : 41- 88: ytded LYQlELErVFArSW--LllgHETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl XYLX_PSEPU : 37- 84: ftdpr LFDlEMKhIFEgNWiyLa--HESqIpekNDYyTTqMGrQPIFITRNkDgE lnafv B 2: 103.5172 7( 7) L-x(3)-E-x(3,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] Occurences: 7(7) BED1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSI avfln BENA_ACICA : 40- 88: ftdqa LfdlEmkyiFEgNWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgEL namin BNZA_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln BPHA_BURCE : 45- 93: yadqs LyelElervFGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSI kvfln NDOB_PSEPU : 26- 74: hgdee LfqhElktiFArNWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgSI rafln TOD1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln XYLX_PSEPU : 37- 85: ftdpr LfdlEmkhiFEgNWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgEL nafvn C 3: 103.5172 7( 7) L-x(2,3)-E-x(4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] Occurences: 7(7) BED1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSI avfln BENA_ACICA : 40- 88: ftdqa LfdlEmkyiFEgNWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgEL namin BNZA_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln BPHA_BURCE : 45- 93: yadqs LyelElervFGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSI kvfln NDOB_PSEPU : 26- 74: hgdee LfqhElktiFArNWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgSI rafln TOD1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln XYLX_PSEPU : 37- 85: ftdpr LfdlEmkhiFEgNWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgEL nafvn D 4: 103.0172 7( 7) L-x(2,3)-E-x(3,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] Occurences: 7(7) BED1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSI avfln BENA_ACICA : 40- 88: ftdqa LfdlEmkyiFEgNWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgEL namin BNZA_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln BPHA_BURCE : 45- 93: yadqs LyelElervFGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSI kvfln NDOB_PSEPU : 26- 74: hgdee LfqhElktiFArNWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgSI rafln TOD1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln XYLX_PSEPU : 37- 85: ftdpr LfdlEmkhiFEgNWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgEL nafvn E 5: 102.5172 11( 7) L-x(2,3)-E-x(2,4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL] Occurences: 11(7) BED1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSI avfln BED1_PSEPU : 44- 89: edlyq Lel-Erv--FArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSI avfln BENA_ACICA : 40- 88: ftdqa LfdlEmkyiFEgNWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgEL namin BNZA_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln BNZA_PSEPU : 44- 89: edlyq Lel-Erv--FArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln BPHA_BURCE : 45- 93: yadqs LyelElervFGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSI kvfln BPHA_BURCE : 48- 93: qslye Lel-Erv--FGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSI kvfln NDOB_PSEPU : 26- 74: hgdee LfqhElktiFArNWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgSI rafln TOD1_PSEPU : 41- 89: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln TOD1_PSEPU : 44- 89: edlyq Lel-Erv--FArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSI avfln XYLX_PSEPU : 37- 85: ftdpr LfdlEmkhiFEgNWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgEL nafvn F 6: 100.7306 7( 7) L-x(3)-E-x(4)-F-[AEG]-x-[NS]-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES] Occurences: 7(7) BED1_PSEPU : 41- 88: ytded LyqlElervFArSWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaS iavfl BENA_ACICA : 40- 87: ftdqa LfdlEmkyiFEgNWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgE lnami BNZA_PSEPU : 41- 88: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl BPHA_BURCE : 45- 92: yadqs LyelElervFGrSWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkS ikvfl NDOB_PSEPU : 26- 73: hgdee LfqhElktiFArNWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgS irafl TOD1_PSEPU : 41- 88: ytded LyqlElervFArSWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaS iavfl XYLX_PSEPU : 37- 84: ftdpr LfdlEmkhiFEgNWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgE lnafv G 7: 100.5095 7( 7) E-x(4)-F-x(3)-W-[ILV]-x-L-[AGT]-H-[DE]-[ST]-x-[IV]-x(3)-[GN]-D-[FY]-x-[AT]-[AT]-x-[IM]-G-x-[DQ]-[EP]-[IV]-[FILV]-[IMV]-[ASTV]-R-[NQ]-x-[DN]-x-[ES]-[IL]-x-[AV]-[FM] Occurences: 7(7) BED1_PSEPU : 45- 92: dlyql ElervFarsWLlLGHEThIrkpGDYfTTyMGeDPVVVVRQkDaSIaVF lnqcr BENA_ACICA : 44- 91: alfdl EmkyiFegnWVyLAHESqIpnnNDYyTTyIGrQPILIARNpNgELnAM inacs BNZA_PSEPU : 45- 92: dlyql ElervFarsWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSIaVF lnqcr BPHA_BURCE : 49- 96: slyel ElervFgrsWLlLGHEShVpetGDFlATyMGeDPVVMVRQkDkSIkVF lnqcr NDOB_PSEPU : 30- 77: elfqh ElktiFarnWLfLTHDSlIpapGDYvTAkMGiDEVIVSRQnDgSIrAF lnvcr TOD1_PSEPU : 45- 92: dlyql ElervFarsWLlLGHETqIrkpGDYiTTyMGeDPVVVVRQkDaSIaVF lnqcr XYLX_PSEPU : 41- 88: rlfdl EmkhiFegnWIyLAHESqIpekNDYyTTqMGrQPIFITRNkDgELnAF vnacs H 8: 67.7824 7( 7) G-N-x(2)-[AGT]-[FHY]-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 109- 137: crsda GNakAFTCSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 108- 136: lghkr GNktTYTCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 109- 135: crada GNakAFTCSYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 109- 137: crada GNakAFTCSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 113- 139: crsda GNakAFTCSYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 113- 141: crsda GNakAFTCSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 94- 122: vsvea GNakGFVCSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 109- 135: crada GNakAFTCSYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 109- 137: crada GNakAFTCSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 105- 133: crfrs GNkaTHTCSFHGWTFSnSGkLlkVkdPkG agypd I 9: 65.1735 7( 7) G-N-x(3)-[FHY]-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 109- 137: crsda GNakaFTCSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 108- 136: lghkr GNkttYTCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 109- 135: crada GNakaFTCSYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 109- 137: crada GNakaFTCSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 113- 139: crsda GNakaFTCSYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 113- 141: crsda GNakaFTCSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 94- 122: vsvea GNakgFVCSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 109- 135: crada GNakaFTCSYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 109- 137: crada GNakaFTCSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 105- 133: crfrs GNkatHTCSFHGWTFSnSGkLlkVkdPkG agypd J 10: 62.5785 7( 7) G-N-x(4)-[TV]-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 109- 137: crsda GNakafTCSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 108- 136: lghkr GNkttyTCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 109- 135: crada GNakafTCSYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 109- 137: crada GNakafTCSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 113- 139: crsda GNakafTCSYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 113- 141: crsda GNakafTCSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 94- 122: vsvea GNakgfVCSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 109- 135: crada GNakafTCSYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 109- 137: crada GNakafTCSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 105- 133: crfrs GNkathTCSFHGWTFSnSGkLlkVkdPkG agypd K 11: 59.4066 7( 7) G-N-x(5)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 109- 137: crsda GNakaftCSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 108- 136: lghkr GNkttytCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 109- 135: crada GNakaftCSYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 109- 137: crada GNakaftCSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 113- 139: crsda GNakaftCSYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 113- 141: crsda GNakaftCSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 94- 122: vsvea GNakgfvCSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 109- 135: crada GNakaftCSYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 109- 137: crada GNakaftCSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 105- 133: crfrs GNkathtCSFHGWTFSnSGkLlkVkdPkG agypd L 12: 59.4066 7( 7) G-x(1,2)-K-x(3,4)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 109- 137: crsda GnaKaft-CSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 108- 136: lghkr Gn-KttytCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 109- 137: crada GnaKaft-CSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 113- 141: crsda GnaKaft-CSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 94- 122: vsvea GnaKgfv-CSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 109- 137: crada GnaKaft-CSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 105- 133: crfrs Gn-KathtCSFHGWTFSnSGkLlkVkdPkG agypd M 13: 55.9959 7( 7) C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(0,2)-P-x-[DEG]-x-[DEG]-x(2)-[ACDG] Occurences: 7(7) BED1_PSEPU : 116- 140: akaft CSYHGWAYDtAGnLinV--PyEaEsfA cldkk BENA_ACICA : 115- 141: kttyt CPFHGWTFNnSGkLlkVkdPsDaGysD cfnqd BNZA_PSEPU : 116- 140: akaft CSYHGWAYDtAGnLvnV--PyEaEsfA clnkk BNZA_PSEPU : 116- 140: akaft CSYHGWAYDtAGnL--VnvPyEaEsfA clnkk BPHA_BURCE : 120- 144: akaft CSYHGWAYDiAGkLvnV--PfEkEafC dkkeg BPHA_BURCE : 120- 144: akaft CSYHGWAYDiAGkL--VnvPfEkEafC dkkeg NDOB_PSEPU : 101- 125: akgfv CSYHGWGFGsNGeLqsV--PfEkDlyG eslnk TOD1_PSEPU : 116- 140: akaft CSYHGWAYDtAGnLvnV--PyEaEsfA clnkk TOD1_PSEPU : 116- 140: akaft CSYHGWAYDtAGnL--VnvPyEaEsfA clnkk XYLX_PSEPU : 112- 138: katht CSFHGWTFSnSGkLlkVkdPkGaGypD sfdcd N 14: 54.7365 7( 7) K-x(3,4)-C-[PS]-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 112- 137: dagna Kaft-CSYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 110- 136: hkrgn KttytCPFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 112- 135: dagna Kaft-CSYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 112- 137: dagna Kaft-CSYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 116- 139: dagna Kaft-CSYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 116- 141: dagna Kaft-CSYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 97- 122: eagna Kgfv-CSYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 112- 135: dagna Kaft-CSYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 112- 137: dagna Kaft-CSYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 107- 133: frsgn KathtCSFHGWTFSnSGkLlkVkdPkG agypd O 15: 51.7809 7( 7) K-x(1,2)-I-x(2,3)-N-W-x(3)-A-[EH]-[ENQ]-x(3)-[DP]-x(3)-[ADV]-x(2)-T-x(3)-[GS]-x(3)-[AGI]-x(4)-[DENS]-x(3)-[AEGS]-x(2)-[AQ]-x-[IPV] Occurences: 7(7) BED1_PSEPU : 202- 248: ipgiq KwvIpc-NWkfaAEQfcsDmyhAgtTahlSgiiAglpeDlelAdlApP kfgkq BENA_ACICA : 46- 92: fdlem Ky-IfegNWvylAHEsqiPnnnDyyTtyiGrqpIliarNpngElnAmI nacsh BNZA_PSEPU : 202- 248: ipgvq KwvIpc-NWkfaAEQfcsDmyhAgtTshlSgilAglpeDlemAdlApP tvgkq BPHA_BURCE : 213- 259: iggmq KwvIpc-NWkfaAEQfcsDmyhAgtTthlSgilAgippEmdlSqaQiP tkgnq NDOB_PSEPU : 188- 234: vgppg KvvIka-NWkapAENfvgDayhVgwThasSlrsGesifSslaGnaAlP pegag TOD1_PSEPU : 202- 248: ipgvq KwvIpc-NWkfaAEQfcsDmyhAgtTshlSgilAglpeDlemAdlApP tvgkq XYLX_PSEPU : 43- 89: fdlem Kh-IfegNWiylAHEsqiPeknDyyTtqmGrqpIfitrNkdgElnAfV nacsh P 16: 51.5486 7( 7) K-x(3,4)-C-x-[FY]-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 112- 137: dagna Kaft-CsYHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 110- 136: hkrgn KttytCpFHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 112- 135: dagna Kaft-CsYHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 112- 137: dagna Kaft-CsYHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 116- 139: dagna Kaft-CsYHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 116- 141: dagna Kaft-CsYHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 97- 122: eagna Kgfv-CsYHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 112- 135: dagna Kaft-CsYHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 112- 137: dagna Kaft-CsYHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 107- 133: frsgn KathtCsFHGWTFSnSGkLlkVkdPkG agypd Q 17: 48.9208 7( 7) N-W-K-x(2)-[AV]-E-x(3,4)-D-x-Y-H-[AV]-[GS]-x-[TV]-x(4)-[AGL]-x(2)-[AGQT]-[EGQ] Occurences: 7(7) BED1_PSEPU : 208- 235: wvipc NWKfaAEqfcsDmYHAGtTahlsGiiAG lpedl BENA_ACICA : 211- 237: ytyeg NWKltAEnga-DgYHVSaVhwnyAatTQ hrkek BNZA_PSEPU : 208- 235: wvipc NWKfaAEqfcsDmYHAGtTshlsGilAG lpedl BPHA_BURCE : 219- 246: wvipc NWKfaAEqfcsDmYHAGtTthlsGilAG ippem NDOB_PSEPU : 194- 221: vvika NWKapAEnfvgDaYHVGwThassLrsGE sifss TOD1_PSEPU : 208- 235: wvipc NWKfaAEqfcsDmYHAGtTshlsGilAG lpedl XYLX_PSEPU : 208- 234: yvyeg NWKvqVEnga-DgYHVStVhwnyAatQQ qrklr R 18: 48.3641 7( 7) K-x(3,4)-C-x(2)-H-G-W-[AGT]-[FY]-[DGNS]-x-[ANS]-G-x-L-x(0,2)-V-x(2)-[EP]-x-[DEG] Occurences: 7(7) BED1_PSEPU : 112- 137: dagna Kaft-CsyHGWAYDtAGnLinVpyEaE sfacl BENA_ACICA : 110- 136: hkrgn KttytCpfHGWTFNnSGkLlkVkdPsD agysd BNZA_PSEPU : 112- 135: dagna Kaft-CsyHGWAYDtAGnL--VnvPyE aesfa BNZA_PSEPU : 112- 137: dagna Kaft-CsyHGWAYDtAGnLvnVpyEaE sfacl BPHA_BURCE : 116- 139: dagna Kaft-CsyHGWAYDiAGkL--VnvPfE keafc BPHA_BURCE : 116- 141: dagna Kaft-CsyHGWAYDiAGkLvnVpfEkE afcdk NDOB_PSEPU : 97- 122: eagna Kgfv-CsyHGWGFGsNGeLqsVpfEkD lyges TOD1_PSEPU : 112- 135: dagna Kaft-CsyHGWAYDtAGnL--VnvPyE aesfa TOD1_PSEPU : 112- 137: dagna Kaft-CsyHGWAYDtAGnLvnVpyEaE sfacl XYLX_PSEPU : 107- 133: frsgn KathtCsfHGWTFSnSGkLlkVkdPkG agypd S 19: 47.3747 7( 7) K-x-[IV]-[FI]-x-[ACG]-N-W-x(2,3)-A-x(0,1)-E-[NQS]-x(2)-[GPS]-[DEN]-x(2)-[DH]-x(3)-T-x(3)-[RS] Occurences: 7(7) BED1_PSEPU : 202- 230: ipgiq KwVIpCNWkfaA-EQfcSDmyHagtTahlS giiag BED1_PSEPU : 202- 230: ipgiq KwVIpCNWkf-AaEQfcSDmyHagtTahlS giiag BENA_ACICA : 46- 75: fdlem KyIFeGNWvylAhESqiPNnnDyytTyigR qpili BNZA_PSEPU : 202- 230: ipgvq KwVIpCNWkfaA-EQfcSDmyHagtTshlS gilag BNZA_PSEPU : 202- 230: ipgvq KwVIpCNWkf-AaEQfcSDmyHagtTshlS gilag BPHA_BURCE : 213- 241: iggmq KwVIpCNWkfaA-EQfcSDmyHagtTthlS gilag BPHA_BURCE : 213- 241: iggmq KwVIpCNWkf-AaEQfcSDmyHagtTthlS gilag NDOB_PSEPU : 188- 216: vgppg KvVIkANWkapA-ENfvGDayHvgwThasS lrsge TOD1_PSEPU : 202- 230: ipgvq KwVIpCNWkfaA-EQfcSDmyHagtTshlS gilag TOD1_PSEPU : 202- 230: ipgvq KwVIpCNWkf-AaEQfcSDmyHagtTshlS gilag XYLX_PSEPU : 43- 72: fdlem KhIFeGNWiylAhESqiPEknDyytTqmgR qpifi T 20: 45.5259 7( 7) I-x(1,2)-R-[ANQS]-x-[ADN]-G-x(1,3)-A-x-[AILV]-x-[ATV]-C-[RS]-[HY]-[HR]-G-x-[AQT] Occurences: 7(7) BED1_PSEPU : 103- 122: hrgmr Ic-RSdAGn--AkAfTCSYHGwA ydtag BENA_ACICA : 80- 101: rqpil Ia-RNpNGelnAmInACSHRGaQ llghk BNZA_PSEPU : 103- 122: hrgmr Ic-RAdAGn--AkAfTCSYHGwA ydtag BPHA_BURCE : 107- 126: hrgmr Ic-RSdAGn--AkAfTCSYHGwA ydiag NDOB_PSEPU : 65- 87: gidev IvsRQnDGsirAfLnVCRHRGkT lvsve TOD1_PSEPU : 103- 122: hrgmr Ic-RAdAGn--AkAfTCSYHGwA ydtag XYLX_PSEPU : 77- 98: rqpif It-RNkDGelnAfVnACSHRGaT lcrfr Number of patterns evaluated by Pratt:13403 Total running time: 9 seconds