------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 3 sequences from file RIBOSOMAL_S7E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 3 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S7E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS7_ANOGA 192 RS7_HUMAN 194 RS8_XENLA 194 Pratt run started at Thu Feb 6 21:06:31 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 166.3020 3( 3) K-x(0,1)-I-I-I-x-V-P-V-P-x(2)-K-x-F-Q-K-x-Q-x-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R 2: 165.8020 3( 3) R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F-E-F-P-E 3: 165.8020 3( 3) G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F-E-F-P 4: 165.8020 3( 3) V-G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F-E-F 5: 165.8020 3( 3) Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D-L-V-x-P-x-E-x(0,1)-V-x(0,1)-G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q 6: 165.8020 3( 3) K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D-L-V-x-P-x-E-x(0,1)-V-x(0,1)-G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q 7: 165.8020 3( 3) N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D-L-V-x-P-x-E-x(0,1)-V-x(0,1)-G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K 8: 165.8020 3( 3) K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D-L-V 9: 165.8020 3( 3) E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D-L 10: 165.8020 3( 3) L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E-D 11: 165.8020 3( 3) E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L-E 12: 165.8020 3( 3) R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I-L 13: 165.8020 3( 3) V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A-I 14: 165.8020 3( 3) L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D-A 15: 165.8020 3( 3) R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V-x-D 16: 165.8020 3( 3) Q-x-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x(3)-T-A-V 17: 165.8020 3( 3) P-x(0,1)-Q-x(0,1)-K-x-F-Q-K-x-Q-x-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-x-R-R-I-L-P-K-P-x-R-x(2)-R-x(2)-N-K-Q-K-R 18: 161.6319 3( 3) R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F-E-F-P-E-x(2)-L 19: 161.6319 3( 3) I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F-E-F-P-E 20: 161.6319 3( 3) E-x-V-G-x-R-I-R-V-K-L-D-G-S-x-L-I-K-V-H-L-D-K-x-Q-Q-x(3)-E-H-K-V-x-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-x-D-V-x-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 194.1342 3( 3) G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P B 2: 194.1342 3( 3) V-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F C 3: 193.1891 3( 3) E-[IV]-V-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F D 4: 191.4042 3( 3) Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q E 5: 191.4042 3( 3) K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q F 6: 190.8861 3( 3) R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E G 7: 188.1352 3( 3) N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K H 8: 186.7160 3( 3) R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E-x(2)-L I 9: 186.7160 3( 3) I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E J 10: 184.9579 3( 3) P-x(0,1)-Q-x(0,1)-K-[AS]-F-Q-K-[IV]-Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x-[RS]-R-[DT]-x-N-K-Q-K-R K 11: 182.2443 3( 3) K-x(0,1)-I-I-I-[FY]-V-P-V-P-x(2)-K-[AS]-F-Q-K-[IV]-Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R L 12: 178.5345 3( 3) K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V M 13: 178.5345 3( 3) E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L N 14: 178.5345 3( 3) L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D O 15: 178.5345 3( 3) E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E P 16: 178.5345 3( 3) R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L Q 17: 178.5345 3( 3) V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I R 18: 178.5345 3( 3) L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A S 19: 178.5345 3( 3) R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D T 20: 178.5339 3( 3) Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 194.1342 3( 3) G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P Occurences: 3(3) RS7_ANOGA : 139- 188: paevv GKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTFEFP enyl RS7_HUMAN : 141- 190: pseiv GKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNFEFP efql RS8_XENLA : 141- 190: pseiv GRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVFEFP efql B 2: 194.1342 3( 3) V-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F Occurences: 3(3) RS7_ANOGA : 138- 187: fpaev VGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTFEF penyl RS7_HUMAN : 140- 189: fpsei VGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNFEF pefql RS8_XENLA : 140- 189: ypsei VGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVFEF pefql C 3: 193.1891 3( 3) E-[IV]-V-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F Occurences: 3(3) RS7_ANOGA : 136- 185: lvfpa EVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTF efpen RS7_HUMAN : 138- 187: lvfps EIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNF efpef RS8_XENLA : 138- 187: lvyps EIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVF efpef D 4: 191.4042 3( 3) Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q Occurences: 3(3) RS7_ANOGA : 112- 161: rdpnk QKRPRSpNVTAVYDAILEDLVFPAEvV-GKRIRVKLDGSQLIKVHLDKNQQ ttieh RS7_ANOGA : 112- 161: rdpnk QKRPRSpNVTAVYDAILEDLVFPAE-VvGKRIRVKLDGSQLIKVHLDKNQQ ttieh RS7_HUMAN : 114- 163: rtknk QKRPRSrTLTAVHDAILEDLVFPSEiV-GKRIRVKLDGSRLIKVHLDKAQQ nnveh RS8_XENLA : 114- 163: rtknk QKRPRSrTLTAVHDAILEDLVYPSEiV-GRRIRVKLDGSRLIKVHLDKAQQ nnveh E 5: 191.4042 3( 3) K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q Occurences: 3(3) RS7_ANOGA : 111- 160: rrdpn KQKRPRSpNVTAVYDAILEDLVFPAEvV-GKRIRVKLDGSQLIKVHLDKNQ qttie RS7_ANOGA : 111- 160: rrdpn KQKRPRSpNVTAVYDAILEDLVFPAE-VvGKRIRVKLDGSQLIKVHLDKNQ qttie RS7_HUMAN : 113- 162: srtkn KQKRPRSrTLTAVHDAILEDLVFPSEiV-GKRIRVKLDGSRLIKVHLDKAQ qnnve RS8_XENLA : 113- 162: srtkn KQKRPRSrTLTAVHDAILEDLVYPSEiV-GRRIRVKLDGSRLIKVHLDKAQ qnnve F 6: 190.8861 3( 3) R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E Occurences: 3(3) RS7_ANOGA : 141- 189: evvgk RIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTFEFPE nyl RS7_HUMAN : 143- 191: eivgk RIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNFEFPE fql RS8_XENLA : 143- 191: eivgr RIRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVFEFPE fql G 7: 188.1352 3( 3) N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V-[FY]-P-[AS]-E-x(0,1)-V-x(0,1)-G-[KR]-R-I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K Occurences: 3(3) RS7_ANOGA : 110- 158: grrdp NKQKRPRSpNVTAVYDAILEDLVFPAEvV-GKRIRVKLDGSQLIKVHLDK nqqtt RS7_ANOGA : 110- 158: grrdp NKQKRPRSpNVTAVYDAILEDLVFPAE-VvGKRIRVKLDGSQLIKVHLDK nqqtt RS7_HUMAN : 112- 160: ksrtk NKQKRPRSrTLTAVHDAILEDLVFPSEiV-GKRIRVKLDGSRLIKVHLDK aqqnn RS8_XENLA : 112- 160: ksrtk NKQKRPRSrTLTAVHDAILEDLVYPSEiV-GRRIRVKLDGSRLIKVHLDK aqqnn H 8: 186.7160 3( 3) R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E-x(2)-L Occurences: 3(3) RS7_ANOGA : 143- 192: vgkri RVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTFEFPEnyL RS7_HUMAN : 145- 194: vgkri RVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNFEFPEfqL RS8_XENLA : 145- 194: vgrri RVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVFEFPEfqL I 9: 186.7160 3( 3) I-R-V-K-L-D-G-S-[QR]-L-I-K-V-H-L-D-K-[AN]-Q-Q-[NT]-[NT]-[IV]-E-H-K-V-[DE]-T-F-x(0,1)-S-x(0,1)-V-Y-K-K-L-T-G-[KR]-D-V-[NTV]-F-E-F-P-E Occurences: 3(3) RS7_ANOGA : 142- 189: vvgkr IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFaS-VYKKLTGRDVTFEFPE nyl RS7_HUMAN : 144- 191: ivgkr IRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVNFEFPE fql RS8_XENLA : 144- 191: ivgrr IRVKLDGSRLIKVHLDKAQQNNVEHKVETF-SgVYKKLTGKDVVFEFPE fql J 10: 184.9579 3( 3) P-x(0,1)-Q-x(0,1)-K-[AS]-F-Q-K-[IV]-Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x-[RS]-R-[DT]-x-N-K-Q-K-R Occurences: 3(3) RS7_ANOGA : 65- 114: iyvpv PkQ-KAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPmRgRRDpNKQKR prspn RS7_HUMAN : 67- 116: ifvpv P-QlKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPtRkSRTkNKQKR prsrt RS8_XENLA : 67- 116: ifvpv P-QlKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPtRkSRTkNKQKR prsrt K 11: 182.2443 3( 3) K-x(0,1)-I-I-I-[FY]-V-P-V-P-x(2)-K-[AS]-F-Q-K-[IV]-Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R Occurences: 3(3) RS7_ANOGA : 56- 104: efnnk KaIIIYVPVPkqKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPmR grrdp RS7_HUMAN : 58- 106: vgggr KaIIIFVPVPqlKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPtR ksrtk RS8_XENLA : 58- 106: vgagr KaIIIFVPVPqlKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPtR ksrtk L 12: 178.5345 3( 3) K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L-V Occurences: 3(3) RS7_ANOGA : 83- 132: vrele KKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAILEDLV fpaev RS7_ANOGA : 83- 132: vrele KKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAILEDLV fpaev RS7_HUMAN : 85- 134: vrele KKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILEDLV fpsei RS8_XENLA : 85- 134: vrele KKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILEDLV ypsei M 13: 178.5345 3( 3) E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D-L Occurences: 3(3) RS7_ANOGA : 82- 131: lvrel EKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAILEDL vfpae RS7_ANOGA : 82- 131: lvrel EKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAILEDL vfpae RS7_HUMAN : 84- 133: lvrel EKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILEDL vfpse RS8_XENLA : 84- 133: lvrel EKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILEDL vypse N 14: 178.5345 3( 3) L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E-D Occurences: 3(3) RS7_ANOGA : 81- 130: rlvre LEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAILED lvfpa RS7_ANOGA : 81- 130: rlvre LEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAILED lvfpa RS7_HUMAN : 83- 132: rlvre LEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILED lvfps RS8_XENLA : 83- 132: rlvre LEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILED lvyps O 15: 178.5345 3( 3) E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L-E Occurences: 3(3) RS7_ANOGA : 80- 129: trlvr ELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAILE dlvfp RS7_ANOGA : 80- 129: trlvr ELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAILE dlvfp RS7_HUMAN : 82- 131: vrlvr ELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILE dlvfp RS8_XENLA : 82- 131: vrlvr ELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAILE dlvyp P 16: 178.5345 3( 3) R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I-L Occurences: 3(3) RS7_ANOGA : 79- 128: qtrlv RELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAIL edlvf RS7_ANOGA : 79- 128: qtrlv RELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAIL edlvf RS7_HUMAN : 81- 130: qvrlv RELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAIL edlvf RS8_XENLA : 81- 130: qvrlv RELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAIL edlvy Q 17: 178.5345 3( 3) V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A-I Occurences: 3(3) RS7_ANOGA : 78- 127: vqtrl VRELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDAI ledlv RS7_ANOGA : 78- 127: vqtrl VRELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDAI ledlv RS7_HUMAN : 80- 129: iqvrl VRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAI ledlv RS8_XENLA : 80- 129: iqvrl VRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDAI ledlv R 18: 178.5345 3( 3) L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D-A Occurences: 3(3) RS7_ANOGA : 77- 126: kvqtr LVRELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYDA iledl RS7_ANOGA : 77- 126: kvqtr LVRELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYDA iledl RS7_HUMAN : 79- 128: kiqvr LVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDA iledl RS8_XENLA : 79- 128: kiqvr LVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHDA iledl S 19: 178.5345 3( 3) R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V-[HY]-D Occurences: 3(3) RS7_ANOGA : 76- 125: qkvqt RLVRELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAVYD ailed RS7_ANOGA : 76- 125: qkvqt RLVRELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAVYD ailed RS7_HUMAN : 78- 127: qkiqv RLVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHD ailed RS8_XENLA : 78- 127: qkiqv RLVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAVHD ailed T 20: 178.5339 3( 3) Q-[TV]-R-L-V-R-E-L-E-K-K-F-S-G-K-H-V-V-F-I-A-[EQ]-R-R-I-L-P-K-P-x-R-x(1,2)-R-x(2,3)-N-K-Q-K-R-P-R-S-x-[NT]-[LV]-T-A-V Occurences: 3(3) RS7_ANOGA : 74- 123: afqkv QTRLVRELEKKFSGKHVVFIAERRILPKPmRgrRdp-NKQKRPRSpNVTAV ydail RS7_ANOGA : 74- 123: afqkv QTRLVRELEKKFSGKHVVFIAERRILPKPmRg-RrdpNKQKRPRSpNVTAV ydail RS7_HUMAN : 76- 125: sfqki QVRLVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAV hdail RS8_XENLA : 76- 125: sfqki QVRLVRELEKKFSGKHVVFIAQRRILPKPtRksRtk-NKQKRPRSrTLTAV hdail Number of patterns evaluated by Pratt:46569 Total running time: 3 seconds