------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file RIBOSOMAL_S6E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S6E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS6E_HALMA 135 RS6_DROME 248 RS6_HUMAN 249 RS6_KLUMA 235 RS6_SCHPO 239 RS6_TOBAC 211 RS6_XENLA 249 RS6_YEAST 236 Pratt run started at Thu Feb 6 21:06:29 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 29.1904 8( 8) G-G-x-D-x(2)-G-x-P-M-x(3)-V 2: 25.0203 8( 8) G-x-D-x(2)-G-x-P-M-x(3)-V 3: 24.0203 8( 8) R-x(2)-V-R-G-x(2)-V-x(0,2)-D 4: 24.0203 8( 8) G-x(0,1)-R-x(1,2)-R-x(2)-V-R-G 5: 24.0203 8( 8) G-x(3)-R-x(2)-V-R-G-x(0,2)-V 6: 24.0203 8( 8) E-x(2)-G-x(0,1)-Y-x(2,3)-I-x(4)-D-x(2)-G 7: 23.5203 8( 8) G-x(0,1)-R-x(2,4)-V-R-G-x(2)-V 8: 23.5203 8( 8) R-x(1,2)-R-x(2)-V-R-G-x(0,2)-V 9: 23.5203 8( 8) G-x(3,4)-R-x(3)-R-x(0,2)-G-x(2)-V-x(5)-V 10: 20.8503 8( 8) D-x(2)-G-x-P-M-x(3)-V 11: 20.3503 8( 8) R-x(2)-G-x(0,1)-E-x(5)-V-x-G 12: 19.8503 8( 8) V-R-G-x(2)-V-x(0,2)-D 13: 19.8503 8( 8) G-F-x(0,1)-P-x(3)-G-x(4,5)-R 14: 19.8503 8( 8) D-x(2,3)-G-F-x(0,1)-P-x(3)-G 15: 19.8503 9( 8) R-x(2)-V-R-G-x(0,2)-V 16: 19.8503 8( 8) R-x(3,4)-E-x(4,5)-V-x-G-x(2)-V 17: 19.8503 8( 8) Y-x(2,3)-I-x(4)-D-x(2)-G-x(0,1)-F 18: 19.8503 8( 8) G-x(0,1)-Y-x(2,3)-I-x(4)-D-x(2)-G 19: 19.8503 8( 8) G-x(4)-I-x(2,3)-G-x(0,1)-D-x(2)-G 20: 19.3503 8( 8) G-x(2,4)-G-F-x(0,1)-P-x(3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 93.3654 8( 8) G-x(0,1)-R-x(1,2)-R-x-[DS]-V-R-G-[ACV]-x-[TV]-x(3)-[LM]-[AS]-[DV]-[GL]-[AGN]-[LV]-[AGV]-[FIV]-x(3)-[GT]-[DE]-x-[DER]-[IL]-[EPT]-[GV]-x-[GT]-[DNR]-x(3)-[DP]-[DKR]-x(2)-[GQ]-[IP] B 2: 86.7647 8( 8) R-[ER]-x-G-x(0,1)-E-x-[DKR]-x(2)-[AS]-V-x-G-x(2)-[GV]-[DGS]-x-[DEN]-[LM]-[AST]-[GV]-[GL]-[ANS]-x-[ATV]-x-[GILV]-[KR]-x(2)-[DER]-x-[DE]-[ILV]-x-G-[LV]-T-[DNT]-x-[ET] C 3: 84.0856 8( 8) R-x(3,4)-E-x(4,5)-V-[DR]-G-[ACG]-[AI]-V-[DGSV]-x(3)-[AGS]-[SV]-L-[AEN]-L-[ATV]-[GIV]-[GILV]-x(2)-[GT]-[DES]-x-[DER]-[ILP]-x(2)-[LPV]-[DT]-[DNV]-x-[EGT]-x-[PT]-x(3)-[GI] D 4: 82.0094 8( 8) G-[ER]-x(2)-R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] E 5: 78.3328 8( 8) R-x(1,2)-R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] F 6: 77.3424 8( 8) G-x(3,4)-R-x(2)-[GV]-R-x(0,2)-G-[ACD]-x-V-[DGS]-x-[DGN]-x-[ASV]-V-[GL]-x(2)-[AGV]-x-[ILV]-[EKR]-x-[GT]-[DEG]-x-[DES]-x-[EPT]-[GS]-[GLV]-x-[DNP]-x(3)-[DP]-x(3)-[GV]-[PT] G 7: 74.6627 8( 8) R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] H 8: 67.0274 8( 8) G-x(0,1)-R-x(2,4)-V-R-G-x(2)-V-[DGS]-x-[DN]-x(3)-[IL]-[AN]-[AL]-x-[IV]-x(3)-G-[DES]-x-[DE]-[ILV]-[DEP]-[GL]-[LV]-[GT] I 9: 64.7369 8( 8) E-x(2)-G-x(0,1)-Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] J 10: 62.4929 8( 8) Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(0,1)-F-[PQ]-[IM]-x(2)-[DG]-[GV]-x(4)-R-[FIV]-x-[GL]-x(4)-[DGN]-x(2)-[CD]-x(2)-[AGP]-x(4)-[DEN]-x(3)-[EKR] K 11: 60.5669 8( 8) G-x(0,1)-Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] L 12: 54.5464 8( 8) G-x(4)-I-x(2,3)-G-x(0,1)-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] M 13: 45.9335 8( 8) R-x-[ST]-V-R-G-x(2)-V-x(0,2)-D-x-[ANST]-x(4)-[ANV]-x-[IV]-x(4)-[GNQS]-[DE]-x(3)-[LPV]-x(3)-[DET] N 14: 41.5049 8( 8) G-G-[CNS]-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V O 15: 38.8460 8( 8) G-G-x-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V P 16: 38.5880 8( 8) V-R-G-x(2)-V-x(0,2)-D-x-[ANST]-x(4)-[ANV]-x-[IV]-x(4)-[GNQS]-[DE]-x(3)-[LPV]-x(3)-[DET] Q 17: 37.4133 8( 8) G-F-x(0,1)-P-x(2)-[DQ]-G-x(4,5)-R-[GIV]-[KR]-x-[LV]-x(3)-[GNT]-x-[PQS] R 18: 37.3349 8( 8) G-[CNS]-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V S 19: 30.5058 8( 8) D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V T 20: 26.3143 8( 8) D-x(2,3)-G-F-x(0,1)-P-x(2)-[DQ]-G-x-[IL] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 93.3654 8( 8) G-x(0,1)-R-x(1,2)-R-x-[DS]-V-R-G-[ACV]-x-[TV]-x(3)-[LM]-[AS]-[DV]-[GL]-[AGN]-[LV]-[AGV]-[FIV]-x(3)-[GT]-[DE]-x-[DER]-[IL]-[EPT]-[GV]-x-[GT]-[DNR]-x(3)-[DP]-[DKR]-x(2)-[GQ]-[IP] Occurences: 8(8) RS6E_HALMA : 72- 117: gsdts G-RpmRpDVRGVtTkeiMSDGGVGFeptTDgRITVrGRevsDDtrQI nakit RS6_DROME : 90- 135: rprrt GeRk-RkSVRGCiVdanMSVLALVVlkkGEkDIPGlTDttiPRrlGP krask RS6_HUMAN : 90- 135: rprrt GeRk-RkSVRGCiVdanLSVLNLVIvkkGEkDIPGlTDttvPRrlGP krasr RS6_KLUMA : 90- 135: rprrn GeRk-RkSVRGAiVgpdLAVLALVIvkkGDqEIEGvTNetvPKrlGP krann RS6_SCHPO : 90- 135: rprrd GeRk-RkSVRGCiVgqdLAVLALAIikqGEqDIPGlTDvtvPKrlGP krask RS6_TOBAC : 59- 104: ygrrn GeRr-RkSVRGCiVspdLSVLNLVIvkkGEnDLPGlTDtekPRmrGP repqr RS6_XENLA : 90- 135: rprrt GeRk-RkSVRGCiVdanLSVLNLVIvrkGEkDIPGlTDntvPRrlGP krasr RS6_YEAST : 90- 135: rprrd GeRk-RkSVRGAiVgpdLAVLALVIvkkGEqELEGlTDttvPKrlGP krann B 2: 86.7647 8( 8) R-[ER]-x-G-x(0,1)-E-x-[DKR]-x(2)-[AS]-V-x-G-x(2)-[GV]-[DGS]-x-[DEN]-[LM]-[AST]-[GV]-[GL]-[ANS]-x-[ATV]-x-[GILV]-[KR]-x(2)-[DER]-x-[DE]-[ILV]-x-G-[LV]-T-[DNT]-x-[ET] Occurences: 8(8) RS6E_HALMA : 44- 86: nrfig RElGdEvDggAVvGldGSlELTGGSdTsGRpmRpDVrGVTTkE imsdg RS6_DROME : 87- 128: scyrp RRtG-ErKrkSVrGciVDaNMSVLAlVvLKkgEkDIpGLTDtT iprrl RS6_HUMAN : 87- 128: scyrp RRtG-ErKrkSVrGciVDaNLSVLNlViVKkgEkDIpGLTDtT vprrl RS6_KLUMA : 87- 128: scyrp RRnG-ErKrkSVrGaiVGpDLAVLAlViVKkgDqEIeGVTNeT vpkrl RS6_SCHPO : 87- 128: pcyrp RRdG-ErKrkSVrGciVGqDLAVLAlAiIKqgEqDIpGLTDvT vpkrl RS6_TOBAC : 56- 97: frgyg RRnG-ErRrkSVrGciVSpDLSVLNlViVKkgEnDLpGLTDtE kprmr RS6_XENLA : 87- 128: scyrp RRtG-ErKrkSVrGciVDaNLSVLNlViVRkgEkDIpGLTDnT vprrl RS6_YEAST : 87- 128: scyrp RRdG-ErKrkSVrGaiVGpDLAVLAlViVKkgEqELeGLTDtT vpkrl C 3: 84.0856 8( 8) R-x(3,4)-E-x(4,5)-V-[DR]-G-[ACG]-[AI]-V-[DGSV]-x(3)-[AGS]-[SV]-L-[AEN]-L-[ATV]-[GIV]-[GILV]-x(2)-[GT]-[DES]-x-[DER]-[ILP]-x(2)-[LPV]-[DT]-[DNV]-x-[EGT]-x-[PT]-x(3)-[GI] Occurences: 8(8) RS6E_HALMA : 40- 87: gqdan RfigrElgde-VDGGAVVgldGSLELTGGsdTSgRPmrPDVrGvTtkeI msdgg RS6_DROME : 87- 134: scyrp Rrtg-ErkrksVRGCIVDanmSVLALVVLkkGEkDIpgLTDtTiPrrlG pkras RS6_HUMAN : 87- 134: scyrp Rrtg-ErkrksVRGCIVDanlSVLNLVIVkkGEkDIpgLTDtTvPrrlG pkras RS6_KLUMA : 87- 134: scyrp Rrng-ErkrksVRGAIVGpdlAVLALVIVkkGDqEIegVTNeTvPkrlG pkran RS6_SCHPO : 87- 134: pcyrp Rrdg-ErkrksVRGCIVGqdlAVLALAIIkqGEqDIpgLTDvTvPkrlG pkras RS6_TOBAC : 56- 103: frgyg Rrng-ErrrksVRGCIVSpdlSVLNLVIVkkGEnDLpgLTDtEkPrmrG prepq RS6_XENLA : 87- 134: scyrp Rrtg-ErkrksVRGCIVDanlSVLNLVIVrkGEkDIpgLTDnTvPrrlG pkras RS6_YEAST : 87- 134: scyrp Rrdg-ErkrksVRGAIVGpdlAVLALVIVkkGEqELegLTDtTvPkrlG pkran D 4: 82.0094 8( 8) G-[ER]-x(2)-R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] Occurences: 8(8) RS6E_HALMA : 72- 119: gsdts GRpmRpDVRG--VTtkeiMsDGGVGfePTtDGrItVRgreVsddTrqiNA kitar RS6_DROME : 90- 139: rprrt GErkRkSVRGciVDanmsVlALVVLkkGEkDIpGlTDttiPrrlGpkrAS kirkl RS6_HUMAN : 90- 139: rprrt GErkRkSVRGciVDanlsVlNLVIVkkGEkDIpGlTDttvPrrlGpkrAS rirkl RS6_KLUMA : 90- 139: rprrn GErkRkSVRGaiVGpdlaVlALVIVkkGDqEIeGvTNetvPkrlGpkrAN nirkf RS6_SCHPO : 90- 139: rprrd GErkRkSVRGciVGqdlaVlALAIIkqGEqDIpGlTDvtvPkrlGpkrAS kirrf RS6_TOBAC : 59- 108: ygrrn GErrRkSVRGciVSpdlsVlNLVIVkkGEnDLpGlTDtekPrmrGprePQ rseal RS6_XENLA : 90- 139: rprrt GErkRkSVRGciVDanlsVlNLVIVrkGEkDIpGlTDntvPrrlGpkrAS rirkl RS6_YEAST : 90- 139: rprrd GErkRkSVRGaiVGpdlaVlALVIVkkGEqELeGlTDttvPkrlGpkrAN nirkf E 5: 78.3328 8( 8) R-x(1,2)-R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] Occurences: 8(8) RS6E_HALMA : 73- 119: sdtsg RpmRpDVRG--VTtkeiMsDGGVGfePTtDGrItVRgreVsddTrqiNA kitar RS6_DROME : 92- 139: rrtge Rk-RkSVRGciVDanmsVlALVVLkkGEkDIpGlTDttiPrrlGpkrAS kirkl RS6_HUMAN : 92- 139: rrtge Rk-RkSVRGciVDanlsVlNLVIVkkGEkDIpGlTDttvPrrlGpkrAS rirkl RS6_KLUMA : 92- 139: rrnge Rk-RkSVRGaiVGpdlaVlALVIVkkGDqEIeGvTNetvPkrlGpkrAN nirkf RS6_SCHPO : 92- 139: rrdge Rk-RkSVRGciVGqdlaVlALAIIkqGEqDIpGlTDvtvPkrlGpkrAS kirrf RS6_TOBAC : 61- 108: rrnge Rr-RkSVRGciVSpdlsVlNLVIVkkGEnDLpGlTDtekPrmrGprePQ rseal RS6_XENLA : 92- 139: rrtge Rk-RkSVRGciVDanlsVlNLVIVrkGEkDIpGlTDntvPrrlGpkrAS rirkl RS6_YEAST : 92- 139: rrdge Rk-RkSVRGaiVGpdlaVlALVIVkkGEqELeGlTDttvPkrlGpkrAN nirkf F 6: 77.3424 8( 8) G-x(3,4)-R-x(2)-[GV]-R-x(0,2)-G-[ACD]-x-V-[DGS]-x-[DGN]-x-[ASV]-V-[GL]-x(2)-[AGV]-x-[ILV]-[EKR]-x-[GT]-[DEG]-x-[DES]-x-[EPT]-[GS]-[GLV]-x-[DNP]-x(3)-[DP]-x(3)-[GV]-[PT] Occurences: 8(8) RS6E_HALMA : 35- 83: qidvd GqdanRfiGRelGDeVDgGaVVGldGsLElTGgSdTSGrPmrpDvrgVT tkeim RS6_DROME : 90- 135: rprrt Gerk-RksVR--GCiVDaNmSVLalVvLKkGEkDiPGLtDttiPrrlGP krask RS6_HUMAN : 90- 135: rprrt Gerk-RksVR--GCiVDaNlSVLnlViVKkGEkDiPGLtDttvPrrlGP krasr RS6_KLUMA : 90- 135: rprrn Gerk-RksVR--GAiVGpDlAVLalViVKkGDqEiEGVtNetvPkrlGP krann RS6_SCHPO : 90- 135: rprrd Gerk-RksVR--GCiVGqDlAVLalAiIKqGEqDiPGLtDvtvPkrlGP krask RS6_TOBAC : 59- 104: ygrrn Gerr-RksVR--GCiVSpDlSVLnlViVKkGEnDlPGLtDtekPrmrGP repqr RS6_XENLA : 90- 135: rprrt Gerk-RksVR--GCiVDaNlSVLnlViVRkGEkDiPGLtDntvPrrlGP krasr RS6_YEAST : 90- 135: rprrd Gerk-RksVR--GAiVGpDlAVLalViVKkGEqElEGLtDttvPkrlGP krann G 7: 74.6627 8( 8) R-x-[DS]-V-R-G-x(0,2)-V-[DGST]-x(4)-[MV]-x-[ADN]-[GL]-[AGV]-[IV]-[GILV]-x(2)-[GP]-[DET]-x-[DE]-[GIL]-x-[GI]-x-[TV]-[DNR]-x(3)-[PV]-x(3)-[GT]-x(3)-[ANP]-[ANQS] Occurences: 8(8) RS6E_HALMA : 76- 119: sgrpm RpDVRG--VTtkeiMsDGGVGfePTtDGrItVRgreVsddTrqiNA kitar RS6_DROME : 94- 139: tgerk RkSVRGciVDanmsVlALVVLkkGEkDIpGlTDttiPrrlGpkrAS kirkl RS6_HUMAN : 94- 139: tgerk RkSVRGciVDanlsVlNLVIVkkGEkDIpGlTDttvPrrlGpkrAS rirkl RS6_KLUMA : 94- 139: ngerk RkSVRGaiVGpdlaVlALVIVkkGDqEIeGvTNetvPkrlGpkrAN nirkf RS6_SCHPO : 94- 139: dgerk RkSVRGciVGqdlaVlALAIIkqGEqDIpGlTDvtvPkrlGpkrAS kirrf RS6_TOBAC : 63- 108: ngerr RkSVRGciVSpdlsVlNLVIVkkGEnDLpGlTDtekPrmrGprePQ rseal RS6_XENLA : 94- 139: tgerk RkSVRGciVDanlsVlNLVIVrkGEkDIpGlTDntvPrrlGpkrAS rirkl RS6_YEAST : 94- 139: dgerk RkSVRGaiVGpdlaVlALVIVkkGEqELeGlTDttvPkrlGpkrAN nirkf H 8: 67.0274 8( 8) G-x(0,1)-R-x(2,4)-V-R-G-x(2)-V-[DGS]-x-[DN]-x(3)-[IL]-[AN]-[AL]-x-[IV]-x(3)-G-[DES]-x-[DE]-[ILV]-[DEP]-[GL]-[LV]-[GT] Occurences: 8(8) RS6E_HALMA : 101- 133: epttd G-Rit--VRGreVSdDtrqINAkItarGSdDVDLLG ld RS6_DROME : 90- 125: rprrt GeRkrksVRGciVDaNmsvLALvVlkkGEkDIPGLT dttip RS6_HUMAN : 90- 125: rprrt GeRkrksVRGciVDaNlsvLNLvIvkkGEkDIPGLT dttvp RS6_KLUMA : 90- 125: rprrn GeRkrksVRGaiVGpDlavLALvIvkkGDqEIEGVT netvp RS6_SCHPO : 90- 125: rprrd GeRkrksVRGciVGqDlavLALaIikqGEqDIPGLT dvtvp RS6_TOBAC : 59- 94: ygrrn GeRrrksVRGciVSpDlsvLNLvIvkkGEnDLPGLT dtekp RS6_XENLA : 90- 125: rprrt GeRkrksVRGciVDaNlsvLNLvIvrkGEkDIPGLT dntvp RS6_YEAST : 90- 125: rprrd GeRkrksVRGaiVGpDlavLALvIvkkGEqELEGLT dttvp I 9: 64.7369 8( 8) E-x(2)-G-x(0,1)-Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] Occurences: 8(8) RS6E_HALMA : 11- 53: avsdp EdgGtYdg-IdmIGDyiGefqiDVDGqdaNrfIGrelGdEVdgG avvgl RS6_DROME : 44- 86: dilgd EwkG-YqlrIagGNDkqGfpmkQGVLthgRvrLLlkkGhSCyrP rrtge RS6_HUMAN : 44- 86: dalge EwkG-YvvrIsgGNDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_KLUMA : 44- 86: eavgd EfkG-YvfkIagGNDkqGfpmkQGVLlptRvkLLmakGtSCyrP rrnge RS6_SCHPO : 44- 86: dsvgp EfaG-YvfkItgGNDkqGfpmfQGVLlphRvrLLlraGhPCyrP rrdge RS6_TOBAC : 11- 53: stdpr EfkG-YvfkImgGCDkqGfpmkQGVLtpgRvrLLlyrGtPCfrG ygrrn RS6_XENLA : 44- 86: dplgd EwkG-YvvrIsgGNDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_YEAST : 44- 86: eavgd EfkG-YvfkIsgGNDkqGfpmkQGVLlptRikLLltkNvSCyrP rrdge J 10: 62.4929 8( 8) Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(0,1)-F-[PQ]-[IM]-x(2)-[DG]-[GV]-x(4)-R-[FIV]-x-[GL]-x(4)-[DGN]-x(2)-[CD]-x(2)-[AGP]-x(4)-[DEN]-x(3)-[EKR] Occurences: 8(8) RS6E_HALMA : 16- 63: edggt Ydg-IdmIGDyiGeFQIdvDGqdanRFiGrelgDevDggAvvglDgslE ltggs RS6_DROME : 48- 95: dewkg YqlrIagGNDkqG-FPMkqGVlthgRVrLllkkGhsCyrPrrtgErkrK svrgc RS6_HUMAN : 48- 95: eewkg YvvrIsgGNDkqG-FPMkqGVlthgRVrLllskGhsCyrPrrtgErkrK svrgc RS6_KLUMA : 48- 95: defkg YvfkIagGNDkqG-FPMkqGVllptRVkLlmakGtsCyrPrrngErkrK svrga RS6_SCHPO : 48- 95: pefag YvfkItgGNDkqG-FPMfqGVllphRVrLllraGhpCyrPrrdgErkrK svrgc RS6_TOBAC : 15- 62: refkg YvfkImgGCDkqG-FPMkqGVltpgRVrLllyrGtpCfrGygrrNgerR rksvr RS6_XENLA : 48- 95: dewkg YvvrIsgGNDkqG-FPMkqGVlthgRVrLllskGhsCyrPrrtgErkrK svrgc RS6_YEAST : 48- 95: defkg YvfkIsgGNDkqG-FPMkqGVllptRIkLlltkNvsCyrPrrdgErkrK svrga K 11: 60.5669 8( 8) G-x(0,1)-Y-x(2,3)-I-x(2)-[GI]-[CGN]-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] Occurences: 8(8) RS6E_HALMA : 14- 53: dpedg GtYdg-IdmIGDyiGefqiDVDGqdaNrfIGrelGdEVdgG avvgl RS6_DROME : 47- 86: gdewk G-YqlrIagGNDkqGfpmkQGVLthgRvrLLlkkGhSCyrP rrtge RS6_HUMAN : 47- 86: geewk G-YvvrIsgGNDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_KLUMA : 47- 86: gdefk G-YvfkIagGNDkqGfpmkQGVLlptRvkLLmakGtSCyrP rrnge RS6_SCHPO : 47- 86: gpefa G-YvfkItgGNDkqGfpmfQGVLlphRvrLLlraGhPCyrP rrdge RS6_TOBAC : 14- 53: prefk G-YvfkImgGCDkqGfpmkQGVLtpgRvrLLlyrGtPCfrG ygrrn RS6_XENLA : 47- 86: gdewk G-YvvrIsgGNDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_YEAST : 47- 86: gdefk G-YvfkIsgGNDkqGfpmkQGVLlptRikLLltkNvSCyrP rrdge L 12: 54.5464 8( 8) G-x(4)-I-x(2,3)-G-x(0,1)-D-x(2)-G-x(4)-[DQ]-[GV]-[DV]-[GL]-x(3)-[NR]-x(2)-[IL]-[GL]-x(3)-[GN]-x-[EPS]-[CV]-x(2)-[GP] Occurences: 8(8) RS6E_HALMA : 14- 53: dpedg GtydgIdmiG-DyiGefqiDVDGqdaNrfIGrelGdEVdgG avvgl RS6_DROME : 47- 86: gdewk GyqlrIag-GnDkqGfpmkQGVLthgRvrLLlkkGhSCyrP rrtge RS6_HUMAN : 47- 86: geewk GyvvrIsg-GnDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_KLUMA : 47- 86: gdefk GyvfkIag-GnDkqGfpmkQGVLlptRvkLLmakGtSCyrP rrnge RS6_SCHPO : 47- 86: gpefa GyvfkItg-GnDkqGfpmfQGVLlphRvrLLlraGhPCyrP rrdge RS6_TOBAC : 14- 53: prefk GyvfkImg-GcDkqGfpmkQGVLtpgRvrLLlyrGtPCfrG ygrrn RS6_XENLA : 47- 86: gdewk GyvvrIsg-GnDkqGfpmkQGVLthgRvrLLlskGhSCyrP rrtge RS6_YEAST : 47- 86: gdefk GyvfkIsg-GnDkqGfpmkQGVLlptRikLLltkNvSCyrP rrdge M 13: 45.9335 8( 8) R-x-[ST]-V-R-G-x(2)-V-x(0,2)-D-x-[ANST]-x(4)-[ANV]-x-[IV]-x(4)-[GNQS]-[DE]-x(3)-[LPV]-x(3)-[DET] Occurences: 8(8) RS6E_HALMA : 102- 135: pttdg RiTVRGreVs-DdTrqinAkItargSDdvdLlglD RS6_DROME : 94- 126: tgerk RkSVRGciV--DaNmsvlAlVvlkkGEkdiPgltD ttipr RS6_HUMAN : 94- 126: tgerk RkSVRGciV--DaNlsvlNlVivkkGEkdiPgltD ttvpr RS6_KLUMA : 94- 128: ngerk RkSVRGaiVgpDlAvlalViVkkgdQEiegVtneT vpkrl RS6_SCHPO : 94- 128: dgerk RkSVRGciVgqDlAvlalAiIkqgeQDipgLtdvT vpkrl RS6_TOBAC : 63- 97: ngerr RkSVRGciVspDlSvlnlViVkkgeNDlpgLtdtE kprmr RS6_XENLA : 94- 126: tgerk RkSVRGciV--DaNlsvlNlVivrkGEkdiPgltD ntvpr RS6_YEAST : 94- 128: dgerk RkSVRGaiVgpDlAvlalViVkkgeQElegLtdtT vpkrl N 14: 41.5049 8( 8) G-G-[CNS]-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V Occurences: 8(8) RS6E_HALMA : 66- 79: slelt GGSDtSGrPMrPDV rgvtt RS6_DROME : 54- 67: qlria GGNDkQGfPMkQGV lthgr RS6_HUMAN : 54- 67: vvris GGNDkQGfPMkQGV lthgr RS6_KLUMA : 54- 67: vfkia GGNDkQGfPMkQGV llptr RS6_SCHPO : 54- 67: vfkit GGNDkQGfPMfQGV llphr RS6_TOBAC : 21- 34: vfkim GGCDkQGfPMkQGV ltpgr RS6_XENLA : 54- 67: vvris GGNDkQGfPMkQGV lthgr RS6_YEAST : 54- 67: vfkis GGNDkQGfPMkQGV llptr O 15: 38.8460 8( 8) G-G-x-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V Occurences: 8(8) RS6E_HALMA : 66- 79: slelt GGsDtSGrPMrPDV rgvtt RS6_DROME : 54- 67: qlria GGnDkQGfPMkQGV lthgr RS6_HUMAN : 54- 67: vvris GGnDkQGfPMkQGV lthgr RS6_KLUMA : 54- 67: vfkia GGnDkQGfPMkQGV llptr RS6_SCHPO : 54- 67: vfkit GGnDkQGfPMfQGV llphr RS6_TOBAC : 21- 34: vfkim GGcDkQGfPMkQGV ltpgr RS6_XENLA : 54- 67: vvris GGnDkQGfPMkQGV lthgr RS6_YEAST : 54- 67: vfkis GGnDkQGfPMkQGV llptr P 16: 38.5880 8( 8) V-R-G-x(2)-V-x(0,2)-D-x-[ANST]-x(4)-[ANV]-x-[IV]-x(4)-[GNQS]-[DE]-x(3)-[LPV]-x(3)-[DET] Occurences: 8(8) RS6E_HALMA : 105- 135: dgrit VRGreVs-DdTrqinAkItargSDdvdLlglD RS6_DROME : 97- 126: rkrks VRGciV--DaNmsvlAlVvlkkGEkdiPgltD ttipr RS6_HUMAN : 97- 126: rkrks VRGciV--DaNlsvlNlVivkkGEkdiPgltD ttvpr RS6_KLUMA : 97- 128: rkrks VRGaiVgpDlAvlalViVkkgdQEiegVtneT vpkrl RS6_SCHPO : 97- 128: rkrks VRGciVgqDlAvlalAiIkqgeQDipgLtdvT vpkrl RS6_TOBAC : 66- 97: rrrks VRGciVspDlSvlnlViVkkgeNDlpgLtdtE kprmr RS6_XENLA : 97- 126: rkrks VRGciV--DaNlsvlNlVivrkGEkdiPgltD ntvpr RS6_YEAST : 97- 128: rkrks VRGaiVgpDlAvlalViVkkgeQElegLtdtT vpkrl Q 17: 37.4133 8( 8) G-F-x(0,1)-P-x(2)-[DQ]-G-x(4,5)-R-[GIV]-[KR]-x-[LV]-x(3)-[GNT]-x-[PQS] Occurences: 8(8) RS6E_HALMA : 94- 116: sdggv GFePttDGritv-RGReVsddTrQ inaki RS6_DROME : 60- 82: gndkq GF-PmkQGvlthgRVRlLlkkGhS cyrpr RS6_HUMAN : 60- 82: gndkq GF-PmkQGvlthgRVRlLlskGhS cyrpr RS6_KLUMA : 60- 82: gndkq GF-PmkQGvllptRVKlLmakGtS cyrpr RS6_SCHPO : 60- 82: gndkq GF-PmfQGvllphRVRlLlraGhP cyrpr RS6_TOBAC : 27- 49: gcdkq GF-PmkQGvltpgRVRlLlyrGtP cfrgy RS6_XENLA : 60- 82: gndkq GF-PmkQGvlthgRVRlLlskGhS cyrpr RS6_YEAST : 60- 82: gndkq GF-PmkQGvllptRIKlLltkNvS cyrpr R 18: 37.3349 8( 8) G-[CNS]-D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V Occurences: 8(8) RS6E_HALMA : 67- 79: leltg GSDtSGrPMrPDV rgvtt RS6_DROME : 55- 67: lriag GNDkQGfPMkQGV lthgr RS6_HUMAN : 55- 67: vrisg GNDkQGfPMkQGV lthgr RS6_KLUMA : 55- 67: fkiag GNDkQGfPMkQGV llptr RS6_SCHPO : 55- 67: fkitg GNDkQGfPMfQGV llphr RS6_TOBAC : 22- 34: fkimg GCDkQGfPMkQGV ltpgr RS6_XENLA : 55- 67: vrisg GNDkQGfPMkQGV lthgr RS6_YEAST : 55- 67: fkisg GNDkQGfPMkQGV llptr S 19: 30.5058 8( 8) D-x-[QS]-G-x-P-M-x-[PQ]-[DG]-V Occurences: 8(8) RS6E_HALMA : 69- 79: ltggs DtSGrPMrPDV rgvtt RS6_DROME : 57- 67: iaggn DkQGfPMkQGV lthgr RS6_HUMAN : 57- 67: isggn DkQGfPMkQGV lthgr RS6_KLUMA : 57- 67: iaggn DkQGfPMkQGV llptr RS6_SCHPO : 57- 67: itggn DkQGfPMfQGV llphr RS6_TOBAC : 24- 34: imggc DkQGfPMkQGV ltpgr RS6_XENLA : 57- 67: isggn DkQGfPMkQGV lthgr RS6_YEAST : 57- 67: isggn DkQGfPMkQGV llptr T 20: 26.3143 8( 8) D-x(2,3)-G-F-x(0,1)-P-x(2)-[DQ]-G-x-[IL] Occurences: 8(8) RS6E_HALMA : 90- 103: keims DggvGFePttDGrI tvrgr RS6_DROME : 57- 68: iaggn Dkq-GF-PmkQGvL thgrv RS6_HUMAN : 57- 68: isggn Dkq-GF-PmkQGvL thgrv RS6_KLUMA : 57- 68: iaggn Dkq-GF-PmkQGvL lptrv RS6_SCHPO : 57- 68: itggn Dkq-GF-PmfQGvL lphrv RS6_TOBAC : 24- 35: imggc Dkq-GF-PmkQGvL tpgrv RS6_XENLA : 57- 68: isggn Dkq-GF-PmkQGvL thgrv RS6_YEAST : 57- 68: isggn Dkq-GF-PmkQGvL lptri Number of patterns evaluated by Pratt:2614 Total running time: 1 seconds