------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file RIBOSOMAL_S4E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S4E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS4E_DROME 261 RS4E_GOSHI 262 RS4E_HALMA 233 RS4E_METVA 244 RS4E_SOLTU 264 RS4E_YEAST 260 RS4X_HUMAN 262 RS4X_MOUSE 262 RS4Y_HUMAN 262 Pratt run started at Thu Feb 6 21:06:25 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 24.5203 9( 9) H-x-K-R-x(3)-P-x(2)-W-x(3,4)-K 2: 24.0203 11( 9) L-x(0,1)-L-x(3,4)-R-x(2)-L-x(2)-A-x(4)-E 3: 20.8503 9( 9) P-x(5)-R-x(2)-L-x(2)-A-x(4)-E 4: 20.3503 12( 9) L-x(3,4)-R-x(2)-L-x(2)-A-x(4)-E 5: 20.3503 9( 9) K-R-x(3)-P-x(2)-W-x(3,4)-K 6: 16.6802 9( 9) R-x(2)-L-x(2)-A-x(4)-E 7: 16.1802 9( 9) K-L-x-K-x(0,1)-V 8: 16.1802 9( 9) R-x(3)-P-x(2)-W-x(3,4)-K 9: 15.6802 9( 9) A-x(4)-E-x(3)-I-x(0,2)-Q 10: 15.6802 9( 9) T-x(3,4)-D-x(5)-N-x(0,1)-D 11: 15.6802 9( 9) L-x(4)-G-x(2,3)-L-x(2,3)-E 12: 15.6802 9( 9) P-x-G-x(0,1)-M-x(0,1)-D 13: 15.6802 9( 9) V-x(0,1)-R-x(0,1)-D-x(4)-A 14: 15.1802 9( 9) D-x(1,2)-Y-x(2)-G-x(0,2)-D 15: 15.1802 10( 9) K-I-x(2,4)-K-x(3,4)-G 16: 15.1802 9( 9) G-x(4)-L-x(3,4)-A-x(0,2)-P 17: 15.1802 9( 9) E-x(1,2)-R-x(0,2)-L-x(2)-D 18: 15.1802 9( 9) R-x(5)-A-x(2,4)-E-x(3,4)-I 19: 14.6802 9( 9) G-x(2)-A-x(3,5)-G-x(3,5)-E 20: 14.6802 9( 9) Y-x(2)-G-x(0,2)-D-x(0,2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 64.6375 9( 9) P-[AV]-G-x(0,1)-M-x(0,1)-D-[IV]-[ILV]-[AST]-[FIL]-[DEPT]-x(2)-[EGN]-E-x-[FY]-x-[LV]-[FILV]-x-[DG]-x(2)-G-R-[FIL]-x-[ILV] B 2: 50.5810 9( 9) H-x-K-R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] C 3: 49.3831 9( 9) D-x(1,2)-Y-x-[AT]-G-x(0,2)-D-[SV]-[IV]-x-[ILV]-x(2)-[EPT]-[DEGN]-[EGQ]-x-[FV]-x-[AGL]-x(2)-[DE]-x(2)-[EG]-x(3)-[AILV] D 4: 46.4110 9( 9) K-R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] E 5: 45.9990 9( 9) P-L-[ILV]-x-[FIV]-[LMV]-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] F 6: 42.2409 9( 9) R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] G 7: 36.8663 11( 9) L-x(0,1)-L-x(3,4)-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] H 8: 35.4201 9( 9) V-x(0,1)-R-x(0,1)-D-x(4)-A-[DG]-x(2)-[DKR]-x-[AIV]-x(4)-[NQT]-x-[DEG]-x-[FIV]-x-[IL] I 9: 34.9163 9( 9) G-x(2)-A-x(3,5)-G-x(3,5)-E-x(4)-[ILPV]-x(4)-[NR]-x-[LV]-x(2)-[ADS]-x-[DNTV]-x(2)-E-[GNV] J 10: 33.3554 9( 9) K-I-x(2,4)-K-x(3,4)-G-x(4)-[ILV]-x-[GL]-x(2)-[GN]-x-[GNT]-x-[IV]-[GV] K 11: 33.1963 12( 9) L-x(3,4)-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] L 12: 29.5262 9( 9) R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] M 13: 28.1684 9( 9) K-L-[CG]-K-x(0,1)-V-x(4)-[FILV]-x(4)-[IV]-[PQ] N 14: 27.6208 9( 9) Y-x-[AT]-G-x(0,2)-D-x(0,2)-V-[ILV]-[GSTV]-x(3)-[EGT]-[EGNQ] O 15: 21.5985 9( 9) R-x(2)-[AL]-[KR]-x-A-x(2,4)-E-x(3,4)-I P 16: 21.4673 9( 9) A-x-[ENT]-x(2)-E-[AV]-x(2)-I-x(0,2)-Q Q 17: 20.5429 9( 9) T-x(3,4)-D-x(5)-N-x(0,1)-D-[GST]-x(2)-[FILV] R 18: 18.3572 9( 9) G-x(3)-[HR]-L-x(3,4)-A-x(0,2)-P S 19: 18.3114 9( 9) L-x(4)-G-x(2,3)-L-x(2,3)-E-[DEK] T 20: 15.1802 10( 9) K-I-x(2,4)-K-x(3,4)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 64.6375 9( 9) P-[AV]-G-x(0,1)-M-x(0,1)-D-[IV]-[ILV]-[AST]-[FIL]-[DEPT]-x(2)-[EGN]-E-x-[FY]-x-[LV]-[FILV]-x-[DG]-x(2)-G-R-[FIL]-x-[ILV] Occurences: 9(9) RS4E_DROME : 83- 111: tdpty PAGyM-DVITLEktGEfFrLVyDvkGRFvI hrisa RS4E_GOSHI : 83- 111: tdkty PAGfM-DVVSIPktNEdFrLLyDtkGRFcL haitg RS4E_HALMA : 77- 105: sdeer PVG-MfDILAFTerEEyYrVFpGegGRLaL taidp RS4E_METVA : 84- 112: keykh PVGlM-DVLSIPelNEnYlVLfDenGRIsL kktek RS4E_SOLTU : 83- 111: tdkty PAGfM-DVVSIPktNEnFrLLyDtkGRFrL hslrd RS4E_YEAST : 82- 110: tdtty PAGfM-DVITLDatNEnFrLVyDvkGRFaV hritd RS4X_HUMAN : 82- 110: tdity PAGfM-DVISIDktGEnFrLIyDtkGRFaV hritp RS4X_MOUSE : 82- 110: tdity PAGfM-DVISIDktGEnFrLIyDtkGRFaV hritp RS4Y_HUMAN : 82- 110: vdvty PAGfM-DVISIEktGEhFrLVyDtkGRFaV hritv B 2: 50.5810 9( 9) H-x-K-R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] Occurences: 9(9) RS4E_DROME : 8- 34: rgpkk HlKRLAAPkaWmld-KlgGvfAprPSTG phklr RS4E_GOSHI : 8- 34: rglkk HlKRLNAPrhWmld-KlgGafApkPSSG phksr RS4E_HALMA : 3- 30: sn HqKRLSVPnsWpverKtaTftVkaGAGP hgesg RS4E_METVA : 9- 36: kgprk HlKRLAAPanWqlprKerTftVrpSPGP hsmdk RS4E_SOLTU : 8- 34: rglkk HlKRLNAPkhWmld-KlgGafApkPSSG phksr RS4E_YEAST : 7- 33: rgpkk HlKRLAAPhhWlld-KlsGcyAprPSAG phklr RS4X_HUMAN : 7- 33: rgpkk HlKRVAAPkhWmld-KltGvfAprPSTG phklr RS4X_MOUSE : 7- 33: rgpkk HlKRVAAPkhWmld-KltGvfAprPSTG phklr RS4Y_HUMAN : 7- 33: rgpkk HlKRVAAPkhWmld-KltGvfAprPSTG phklr C 3: 49.3831 9( 9) D-x(1,2)-Y-x-[AT]-G-x(0,2)-D-[SV]-[IV]-x-[ILV]-x(2)-[EPT]-[DEGN]-[EGQ]-x-[FV]-x-[AGL]-x(2)-[DE]-x(2)-[EG]-x(3)-[AILV] Occurences: 9(9) RS4E_DROME : 79- 111: gkvrt DptYpAGymDVItLekTGEfFrLvyDvkGrfvI hrisa RS4E_GOSHI : 79- 111: gkvrt DktYpAGfmDVVsIpkTNEdFrLlyDtkGrfcL haitg RS4E_HALMA : 146- 176: lived DqtYdAG--DSIvVgnEDGeVvAhfEyeEgalV tavdg RS4E_METVA : 159- 188: lkaee Di-YkTG--DSVlVslPEQaVvGhvEfnEgklA yitgg RS4E_SOLTU : 79- 111: gkvrt DktYpAGfmDVVsIpkTNEnFrLlyDtkGrfrL hslrd RS4E_YEAST : 78- 110: gkvrt DttYpAGfmDVItLdaTNEnFrLvyDvkGrfaV hritd RS4X_HUMAN : 78- 110: gkvrt DitYpAGfmDVIsIdkTGEnFrLiyDtkGrfaV hritp RS4X_MOUSE : 78- 110: gkvrt DitYpAGfmDVIsIdkTGEnFrLiyDtkGrfaV hritp RS4Y_HUMAN : 78- 110: gkvrv DvtYpAGfmDVIsIekTGEhFrLvyDtkGrfaV hritv D 4: 46.4110 9( 9) K-R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] Occurences: 9(9) RS4E_DROME : 10- 34: pkkhl KRLAAPkaWmld-KlgGvfAprPSTG phklr RS4E_GOSHI : 10- 34: lkkhl KRLNAPrhWmld-KlgGafApkPSSG phksr RS4E_HALMA : 5- 30: snhq KRLSVPnsWpverKtaTftVkaGAGP hgesg RS4E_METVA : 11- 36: prkhl KRLAAPanWqlprKerTftVrpSPGP hsmdk RS4E_SOLTU : 10- 34: lkkhl KRLNAPkhWmld-KlgGafApkPSSG phksr RS4E_YEAST : 9- 33: pkkhl KRLAAPhhWlld-KlsGcyAprPSAG phklr RS4X_HUMAN : 9- 33: pkkhl KRVAAPkhWmld-KltGvfAprPSTG phklr RS4X_MOUSE : 9- 33: pkkhl KRVAAPkhWmld-KltGvfAprPSTG phklr RS4Y_HUMAN : 9- 33: pkkhl KRVAAPkhWmld-KltGvfAprPSTG phklr E 5: 45.9990 9( 9) P-L-[ILV]-x-[FIV]-[LMV]-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] Occurences: 9(9) RS4E_DROME : 43- 64: lresl PLLtFLRNrLkyAlNgaEVtkI vmqrl RS4E_GOSHI : 43- 64: srecl PLIlILRNrLkyAlTyrEViaI lmqrh RS4E_HALMA : 37- 58: gesgv PLLiVLRDvLgyAdNrkEAryA lnedn RS4E_METVA : 44- 65: mdksl PLLlIVRDtLkcAdNarEAkkI iqmgk RS4E_SOLTU : 43- 64: srecl PLViIMRNrLkyAlTyrEVisI lmqrq RS4E_YEAST : 42- 63: lresl PLIvFLRNrLkyAlNgrEVkaI lmqrh RS4X_HUMAN : 42- 63: lrecl PLIiFLRNrLkyAlTgdEVkkI cmqrf RS4X_MOUSE : 42- 63: lrecl PLIiFLRNrLkyAlTgdEVkkI cmqrf RS4Y_HUMAN : 42- 63: lrecl PLIvFLRNrLkyAlTgdEVkkI cmqrf F 6: 42.2409 9( 9) R-[LV]-[ANS]-[AV]-P-x(2)-W-x(3,4)-K-x(2)-[GT]-x(2)-[AV]-x(2)-[GPS]-[APS]-[AGST]-[GP] Occurences: 9(9) RS4E_DROME : 11- 34: kkhlk RLAAPkaWmld-KlgGvfAprPSTG phklr RS4E_GOSHI : 11- 34: kkhlk RLNAPrhWmld-KlgGafApkPSSG phksr RS4E_HALMA : 6- 30: snhqk RLSVPnsWpverKtaTftVkaGAGP hgesg RS4E_METVA : 12- 36: rkhlk RLAAPanWqlprKerTftVrpSPGP hsmdk RS4E_SOLTU : 11- 34: kkhlk RLNAPkhWmld-KlgGafApkPSSG phksr RS4E_YEAST : 10- 33: kkhlk RLAAPhhWlld-KlsGcyAprPSAG phklr RS4X_HUMAN : 10- 33: kkhlk RVAAPkhWmld-KltGvfAprPSTG phklr RS4X_MOUSE : 10- 33: kkhlk RVAAPkhWmld-KltGvfAprPSTG phklr RS4Y_HUMAN : 10- 33: kkhlk RVAAPkhWmld-KltGvfAprPSTG phklr G 7: 36.8663 11( 9) L-x(0,1)-L-x(3,4)-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] Occurences: 11(9) RS4E_DROME : 42- 64: klres LpLltflRNrLkyAlNgaEVtkI vmqrl RS4E_DROME : 44- 64: reslp L-Ltfl-RNrLkyAlNgaEVtkI vmqrl RS4E_GOSHI : 42- 64: ksrec LpLililRNrLkyAlTyrEViaI lmqrh RS4E_HALMA : 38- 58: esgvp L-Livl-RDvLgyAdNrkEAryA lnedn RS4E_METVA : 43- 65: smdks LpLllivRDtLkcAdNarEAkkI iqmgk RS4E_METVA : 45- 65: dkslp L-Lliv-RDtLkcAdNarEAkkI iqmgk RS4E_SOLTU : 42- 64: ksrec LpLviimRNrLkyAlTyrEVisI lmqrq RS4E_YEAST : 41- 63: klres LpLivflRNrLkyAlNgrEVkaI lmqrh RS4X_HUMAN : 41- 63: klrec LpLiiflRNrLkyAlTgdEVkkI cmqrf RS4X_MOUSE : 41- 63: klrec LpLiiflRNrLkyAlTgdEVkkI cmqrf RS4Y_HUMAN : 41- 63: klrec LpLivflRNrLkyAlTgdEVkkI cmqrf H 8: 35.4201 9( 9) V-x(0,1)-R-x(0,1)-D-x(4)-A-[DG]-x(2)-[DKR]-x-[AIV]-x(4)-[NQT]-x-[DEG]-x-[FIV]-x-[IL] Occurences: 9(9) RS4E_DROME : 76- 101: kvygk V-RtDptypAGymDvItlekTgEfFrL vydvk RS4E_GOSHI : 76- 101: mvdgk V-RtDktypAGfmDvVsipkTnEdFrL lydtk RS4E_HALMA : 41- 66: vplli VlR-DvlgyADnrKeAryalNeDnVlI ngkai RS4E_METVA : 49- 73: pllli V-R-DtlkcADnaReAkkiiQmGkIlI dgvkr RS4E_SOLTU : 76- 101: mvdgk V-RtDktypAGfmDvVsipkTnEnFrL lydtk RS4E_YEAST : 75- 100: kvdgk V-RtDttypAGfmDvItldaTnEnFrL vydvk RS4X_HUMAN : 75- 100: kidgk V-RtDitypAGfmDvIsidkTgEnFrL iydtk RS4X_MOUSE : 75- 100: kidgk V-RtDitypAGfmDvIsidkTgEnFrL iydtk RS4Y_HUMAN : 75- 100: kidgk V-RvDvtypAGfmDvIsiekTgEhFrL vydtk I 9: 34.9163 9( 9) G-x(2)-A-x(3,5)-G-x(3,5)-E-x(4)-[ILPV]-x(4)-[NR]-x-[LV]-x(2)-[ADS]-x-[DNTV]-x(2)-E-[GNV] Occurences: 9(9) RS4E_DROME : 25- 61: ldklg GvfAprpstGphklrEslplLtflrNrLkyAlNgaEV tkivm RS4E_GOSHI : 25- 61: ldklg GafApkpssGphksrEclplIlilrNrLkyAlTyrEV iailm RS4E_HALMA : 181- 213: vtavd GahAgev--Geve--EiqvtPgsaqNnVivSqDegEG fetve RS4E_METVA : 185- 219: vefne GklAyitg-Gkhvg-EfakvVevekRtLysDiVtlEN kdgek RS4E_METVA : 185- 219: vefne GklAyit--GgkhvgEfakvVevekRtLysDiVtlEN kdgek RS4E_SOLTU : 25- 61: ldklg GafApkpssGphksrEclplViimrNrLkyAlTyrEV isilm RS4E_YEAST : 24- 60: ldkls GcyAprpsaGphklrEslplIvflrNrLkyAlNgrEV kailm RS4X_HUMAN : 24- 60: ldklt GvfAprpstGphklrEclplIiflrNrLkyAlTgdEV kkicm RS4X_MOUSE : 24- 60: ldklt GvfAprpstGphklrEclplIiflrNrLkyAlTgdEV kkicm RS4Y_HUMAN : 24- 60: ldklt GvfAprpstGphklrEclplIvflrNrLkyAlTgdEV kkicm J 10: 33.3554 9( 9) K-I-x(2,4)-K-x(3,4)-G-x(4)-[ILV]-x-[GL]-x(2)-[GN]-x-[GNT]-x-[IV]-[GV] Occurences: 9(9) RS4E_DROME : 168- 193: diasg KItdyiKfds-GnlcmItGgrNlGrVG tvvnr RS4E_GOSHI : 168- 193: dlesn KIvdfiKfdv-GnvvmVtGgrNrGrVG viknr RS4E_HALMA : 119- 143: qsklg KIvt--KthvsGgdvqLgLhdGeTlIV eddqt RS4E_METVA : 124- 148: gvklc KIvn--KtvikGghiqLnLhdGrNqIV kvana RS4E_SOLTU : 168- 193: dlesn KIvdfiKfdv-GnvvmVtGgrNrGrVG viknr RS4E_YEAST : 167- 192: dlasg KItdfiKfda-GklvyVtGgrNlGrIG tivhk RS4X_HUMAN : 167- 192: dletg KItdfiKfdt-GnlcmVtGgaNlGrIG vitnr RS4X_MOUSE : 167- 192: dletg KItdfiKfdt-GnlcmVtGgaNlGrIG vitnr RS4Y_HUMAN : 167- 192: dlgtg KIinfiKfdt-GnlcmViGgaNlGrVG vitnr K 11: 33.1963 12( 9) L-x(3,4)-R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] Occurences: 12(9) RS4E_DROME : 44- 64: reslp LltflRNrLkyAlNgaEVtkI vmqrl RS4E_DROME : 45- 64: eslpl Ltfl-RNrLkyAlNgaEVtkI vmqrl RS4E_GOSHI : 44- 64: reclp LililRNrLkyAlTyrEViaI lmqrh RS4E_HALMA : 38- 58: esgvp LlivlRDvLgyAdNrkEAryA lnedn RS4E_HALMA : 39- 58: sgvpl Livl-RDvLgyAdNrkEAryA lnedn RS4E_METVA : 45- 65: dkslp LllivRDtLkcAdNarEAkkI iqmgk RS4E_METVA : 46- 65: kslpl Lliv-RDtLkcAdNarEAkkI iqmgk RS4E_SOLTU : 44- 64: reclp LviimRNrLkyAlTyrEVisI lmqrq RS4E_YEAST : 43- 63: reslp LivflRNrLkyAlNgrEVkaI lmqrh RS4X_HUMAN : 43- 63: reclp LiiflRNrLkyAlTgdEVkkI cmqrf RS4X_MOUSE : 43- 63: reclp LiiflRNrLkyAlTgdEVkkI cmqrf RS4Y_HUMAN : 43- 63: reclp LivflRNrLkyAlTgdEVkkI cmqrf L 12: 29.5262 9( 9) R-[DN]-x-L-x(2)-A-x-[NT]-x(2)-E-[AV]-x(2)-[AI] Occurences: 9(9) RS4E_DROME : 49- 64: lltfl RNrLkyAlNgaEVtkI vmqrl RS4E_GOSHI : 49- 64: lilil RNrLkyAlTyrEViaI lmqrh RS4E_HALMA : 43- 58: llivl RDvLgyAdNrkEAryA lnedn RS4E_METVA : 50- 65: llliv RDtLkcAdNarEAkkI iqmgk RS4E_SOLTU : 49- 64: lviim RNrLkyAlTyrEVisI lmqrq RS4E_YEAST : 48- 63: livfl RNrLkyAlNgrEVkaI lmqrh RS4X_HUMAN : 48- 63: liifl RNrLkyAlTgdEVkkI cmqrf RS4X_MOUSE : 48- 63: liifl RNrLkyAlTgdEVkkI cmqrf RS4Y_HUMAN : 48- 63: livfl RNrLkyAlTgdEVkkI cmqrf M 13: 28.1684 9( 9) K-L-[CG]-K-x(0,1)-V-x(4)-[FILV]-x(4)-[IV]-[PQ] Occurences: 9(9) RS4E_DROME : 122- 137: eeaky KLCK-VkktqLgakgVP flvth RS4E_GOSHI : 122- 137: detkf KLCK-VrsvqFgqkgIP ylnty RS4E_HALMA : 116- 132: daaqs KLGKiVtkthVsggdVQ lglhd RS4E_METVA : 121- 137: ektgv KLCKiVnktvIkgghIQ lnlhd RS4E_SOLTU : 122- 137: eeskf KLCK-VrsvqFgqkgIP ylnty RS4E_YEAST : 121- 136: eeasy KLGK-VkkvqLgkkgVP yvvth RS4X_HUMAN : 121- 136: eeaky KLCK-VrkifVgtkgIP hlvth RS4X_MOUSE : 121- 136: eeaky KLCK-VrkifVgtkgIP hlvth RS4Y_HUMAN : 121- 136: eeaky KLCK-VrkitVgvkgIP hlvth N 14: 27.6208 9( 9) Y-x-[AT]-G-x(0,2)-D-x(0,2)-V-[ILV]-[GSTV]-x(3)-[EGT]-[EGNQ] Occurences: 9(9) RS4E_DROME : 82- 96: rtdpt YpAGymD--VITlekTG effrl RS4E_GOSHI : 82- 96: rtdkt YpAGfmD--VVSipkTN edfrl RS4E_HALMA : 149- 163: eddqt YdAG--DsiVVGnedGE vvahf RS4E_METVA : 161- 174: aeedi YkTG--Ds-VLVslpEQ avvgh RS4E_SOLTU : 82- 96: rtdkt YpAGfmD--VVSipkTN enfrl RS4E_YEAST : 81- 95: rtdtt YpAGfmD--VITldaTN enfrl RS4X_HUMAN : 81- 95: rtdit YpAGfmD--VISidkTG enfrl RS4X_MOUSE : 81- 95: rtdit YpAGfmD--VISidkTG enfrl RS4Y_HUMAN : 81- 95: rvdvt YpAGfmD--VISiekTG ehfrl O 15: 21.5985 9( 9) R-x(2)-[AL]-[KR]-x-A-x(2,4)-E-x(3,4)-I Occurences: 9(9) RS4E_DROME : 49- 64: lltfl RnrLKyAlngaEvtk-I vmqrl RS4E_GOSHI : 49- 64: lilil RnrLKyAltyrEvia-I lmqrh RS4E_HALMA : 52- 66: gyadn RkeARyAln--EdnvlI ngkai RS4E_METVA : 50- 65: llliv RdtLKcAdnarEakk-I iqmgk RS4E_METVA : 50- 66: llliv RdtLKcAdnarEakkiI qmgki RS4E_SOLTU : 49- 64: lviim RnrLKyAltyrEvis-I lmqrq RS4E_YEAST : 48- 63: livfl RnrLKyAlngrEvka-I lmqrh RS4X_HUMAN : 48- 63: liifl RnrLKyAltgdEvkk-I cmqrf RS4X_MOUSE : 48- 63: liifl RnrLKyAltgdEvkk-I cmqrf RS4Y_HUMAN : 48- 63: livfl RnrLKyAltgdEvkk-I cmqrf P 16: 21.4673 9( 9) A-x-[ENT]-x(2)-E-[AV]-x(2)-I-x(0,2)-Q Occurences: 9(9) RS4E_DROME : 55- 67: nrlky AlNgaEVtkIvmQ rlvkv RS4E_GOSHI : 55- 67: nrlky AlTyrEViaIlmQ rhvmv RS4E_HALMA : 184- 194: vdgah AgEvgEVeeI--Q vtpgs RS4E_METVA : 56- 67: dtlkc AdNarEAkkIi-Q mgkil RS4E_SOLTU : 55- 67: nrlky AlTyrEVisIlmQ rqvmv RS4E_YEAST : 54- 66: nrlky AlNgrEVkaIlmQ rhvkv RS4X_HUMAN : 54- 66: nrlky AlTgdEVkkIcmQ rfiki RS4X_MOUSE : 54- 66: nrlky AlTgdEVkkIcmQ rfiki RS4Y_HUMAN : 54- 66: nrlky AlTgdEVkkIcmQ rfiki Q 17: 20.5429 9( 9) T-x(3,4)-D-x(5)-N-x(0,1)-D-[GST]-x(2)-[FILV] Occurences: 9(9) RS4E_DROME : 146- 162: thdgr TirypDplihaN-DSvqV diasg RS4E_GOSHI : 146- 162: tydgr TirypDplikaN-DTikL dlesn RS4E_HALMA : 148- 165: veddq TydagDsivvgNeDGevV ahfey RS4E_METVA : 209- 225: evekr Tlys-DivtleNkDGekF ktikp RS4E_SOLTU : 146- 162: tydgr TirypDplikaN-DTikL dlesn RS4E_YEAST : 145- 161: thdgr TirypDpnikvN-DTvkI dlasg RS4X_HUMAN : 145- 161: thdar TirypDplikvN-DTiqI dletg RS4X_MOUSE : 145- 161: thdar TirypDplikvN-DTiqI dletg RS4Y_HUMAN : 145- 161: thdar TirypDpvikvN-DTvqI dlgtg R 18: 18.3572 9( 9) G-x(3)-[HR]-L-x(3,4)-A-x(0,2)-P Occurences: 9(9) RS4E_DROME : 4- 15: mar GpkkHLkrlaA--P kawml RS4E_DROME : 4- 15: mar GpkkHLkrl-Aa-P kawml RS4E_GOSHI : 4- 15: mar GlkkHLkrlnA--P rhwml RS4E_HALMA : 98- 110: yrvfp GeggRLalt-AidP daaqs RS4E_METVA : 5- 16: maik GprkHLkrlaA--P anwql RS4E_METVA : 5- 16: maik GprkHLkrl-Aa-P anwql RS4E_SOLTU : 4- 15: mar GlkkHLkrlnA--P khwml RS4E_YEAST : 3- 14: ar GpkkHLkrlaA--P hhwll RS4E_YEAST : 3- 14: ar GpkkHLkrl-Aa-P hhwll RS4X_HUMAN : 3- 14: ar GpkkHLkrvaA--P khwml RS4X_HUMAN : 3- 14: ar GpkkHLkrv-Aa-P khwml RS4X_MOUSE : 3- 14: ar GpkkHLkrvaA--P khwml RS4X_MOUSE : 3- 14: ar GpkkHLkrv-Aa-P khwml RS4Y_HUMAN : 3- 14: ar GpkkHLkrvaA--P khwml RS4Y_HUMAN : 3- 14: ar GpkkHLkrv-Aa-P khwml S 19: 18.3114 9( 9) L-x(4)-G-x(2,3)-L-x(2,3)-E-[DEK] Occurences: 9(9) RS4E_DROME : 238- 251: kpyis LpkgkGvk-LsiaEE rdkrl RS4E_GOSHI : 238- 251: kpwvs LpkrkGik-LsiiEE arkrl RS4E_HALMA : 133- 145: ggdvq LglhdGet-Liv-ED dqtyd RS4E_METVA : 103- 117: enylv LfdenGrisLkktEK tgvkl RS4E_SOLTU : 238- 251: kpwvs LpkgkGik-LtiiED arkrl RS4E_YEAST : 237- 250: kpyis LpkgkGik-LsiaEE rdrrr RS4X_HUMAN : 237- 250: kpwis LprgkGir-LtiaEE rdkrl RS4X_MOUSE : 237- 250: kpwis LprgkGir-LtiaEE rdkrl RS4Y_HUMAN : 237- 250: kpwis LprgkGir-LtvaEE rdkrl T 20: 15.1802 10( 9) K-I-x(2,4)-K-x(3,4)-G Occurences: 10(9) RS4E_DROME : 168- 178: diasg KItdyiKfds-G nlcmi RS4E_GOSHI : 168- 178: dlesn KIvdfiKfdv-G nvvmv RS4E_HALMA : 119- 128: qsklg KIvt--KthvsG gdvql RS4E_METVA : 64- 75: areak KIiqmgKilidG vkrke RS4E_METVA : 124- 133: gvklc KIvn--KtvikG ghiql RS4E_SOLTU : 168- 178: dlesn KIvdfiKfdv-G nvvmv RS4E_YEAST : 167- 177: dlasg KItdfiKfda-G klvyv RS4X_HUMAN : 167- 177: dletg KItdfiKfdt-G nlcmv RS4X_MOUSE : 167- 177: dletg KItdfiKfdt-G nlcmv RS4Y_HUMAN : 167- 177: dlgtg KIinfiKfdt-G nlcmv Number of patterns evaluated by Pratt:3688 Total running time: 3 seconds