------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 31 sequences from file RIBOSOMAL_S3_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 31 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S3_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS3_ACHAX 257 RS3_ACHFL 241 RS3_ACHLA 265 RS3_ACHSP 248 RS3_ACYKS 205 RS3_ANAAB 251 RS3_BACST 217 RS3_BACSU 217 RS3_CHLEU 800 RS3_CHLRE 712 RS3_CYAPA 219 RS3_ECOLI 232 RS3_EPIVI 220 RS3_EUGGR 218 RS3_GRATE 209 RS3_HAEIN 234 RS3_HALHA 302 RS3_HALMA 304 RS3_MAIZE 224 RS3_MARPO 217 RS3_MYCCA 232 RS3_ORYSA 239 RS3_PINTH 217 RS3_SPIOL 218 RS3_THEMA 209 RS3_TOBAC 218 RT03_MAIZE 559 RT03_MARPO 430 RT03_OENBE 550 RT03_ORYSA 538 RT03_PETHY 562 Pratt run started at Thu Feb 6 21:06:20 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 18.8503 32( 31) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G 2: 15.6802 31( 31) G-x(3)-A-x(0,2)-E-x(4)-G 3: 15.6802 31( 31) G-x(2,3)-A-x(1,2)-E-x(4)-G 4: 15.1802 45( 31) G-x(3,4)-A-x(0,2)-E-x(4)-G 5: 12.0102 52( 31) G-x(2)-G-x(0,1)-K 6: 12.0102 44( 31) G-x(1,2)-G-x-K 7: 12.0102 32( 31) T-x(2)-G-x(4,5)-K 8: 12.0102 34( 31) A-x(2,3)-E-x(4)-G 9: 12.0102 34( 31) A-x(1,2)-E-x(4)-G 10: 12.0102 36( 31) G-x(2,3)-G-x-E 11: 11.5102 55( 31) K-x(4,5)-G-x(0,1)-R 12: 11.5102 40( 31) G-x(2,3)-A-x(1,2)-E 13: 11.5102 33( 31) G-x(3)-A-x(0,2)-E 14: 11.5102 47( 31) T-x(1,2)-G-x(4,5)-K 15: 11.5102 37( 31) G-x(0,1)-E-x(1,2)-A 16: 11.5102 35( 31) R-x(2,3)-G-x(3,4)-A 17: 11.5102 58( 31) G-x(0,1)-R-x(0,1)-G 18: 11.5102 37( 31) G-x(2,3)-G-x(1,2)-E 19: 11.5102 55( 31) K-x(3,4)-G-x(2,3)-G 20: 11.5102 42( 31) G-x(2,3)-G-x(0,1)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 21.4475 32( 31) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] B 2: 18.2774 31( 31) G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] C 3: 17.9766 33( 31) R-x(2,3)-G-x(3,4)-A-x(2)-[EP]-x(4)-[GI] D 4: 17.7774 45( 31) G-x(3,4)-A-x(0,2)-E-x(4)-G-x(2)-[PST] E 5: 15.6802 31( 31) G-x(2,3)-A-x(1,2)-E-x(4)-G F 6: 14.6802 32( 31) R-x(2,4)-G-x(3)-A-x(0,2)-E G 7: 14.6787 42( 31) G-x(1,2)-G-[GIV]-K H 8: 14.6314 31( 31) A-x(1,2)-E-x(4)-G-x(2)-[GPS] I 9: 14.6074 31( 31) A-x(2,3)-E-x(4)-G-x(2)-[PST] J 10: 14.1720 45( 31) K-x(4,5)-G-x(0,1)-R-[ILV] K 11: 12.0102 52( 31) G-x(2)-G-x(0,1)-K L 12: 12.0102 32( 31) T-x(2)-G-x(4,5)-K M 13: 12.0102 36( 31) G-x(2,3)-G-x-E N 14: 11.5102 31( 31) G-x(3)-A-x(0,2)-E O 15: 11.5102 40( 31) G-x(2,3)-A-x(1,2)-E P 16: 11.5102 47( 31) T-x(1,2)-G-x(4,5)-K Q 17: 11.5102 37( 31) G-x(0,1)-E-x(1,2)-A R 18: 11.5102 35( 31) R-x(2,3)-G-x(3,4)-A S 19: 11.5102 58( 31) G-x(0,1)-R-x(0,1)-G T 20: 11.5102 37( 31) G-x(2,3)-G-x(1,2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 21.4475 32( 31) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] Occurences: 32(31) RS3_ACHAX : 160- 178: ktlsq Rlg--GremArtEgyseGqvP lhtlr RS3_ACHFL : 159- 177: tsvsg Rlg--GvemArtEgyieGsvP lstlr RS3_ACHLA : 160- 178: tlvsg Rlg--GaemArsEgyseGrvP lhtlr RS3_ACHSP : 160- 178: tlvsg Rlg--GaemArsEgyseGrvP lhtlr RS3_ACYKS : 129- 147: vdvsg Rlg--GaeiArtEwyreGrvP lhtlr RS3_ANAAB : 161- 179: tlisg Rlg--GaeiArsEgyneGqvP lqtlr RS3_BACST : 153- 172: ktmvv Rrlg-GaeiArsEhyseGtvP lhtlr RS3_BACST : 154- 172: tmvvr Rlg--GaeiArsEhyseGtvP lhtlr RS3_BACSU : 154- 172: tmvsg Rlg--GadiArpEyyseGtvP lhtlr RS3_CHLEU : 740- 758: iqvag Rln--GaeiArtEwvraGrvP lqtlr RS3_CHLRE : 659- 677: iqvag Rln--GaeiArsEwvraGrvP lqtlr RS3_CYAPA : 158- 176: iqisg Rln--GaeiArsEwsreGrvP lqtlr RS3_ECOLI : 155- 173: vevsg Rlg--GaeiArtEwyreGrvP lhtlr RS3_EPIVI : 169- 187: vqisg Rid--GkeiArvEwireGrvP lqtiq RS3_EUGGR : 169- 187: vqvsg Rln--GieiArtEwfreGrvP lhtlr RS3_GRATE : 158- 176: iqvsg Rln--GseiAriEsvreGrvP lqtlr RS3_HAEIN : 155- 173: vevsg Rlg--GaeiArsEwyreGrvP lhtlr RS3_HALHA : 119- 137: httid RimesGalgA--EivlsGkvT gnrgr RS3_HALMA : 119- 137: httid RimesGalgA--EivlsGkvT garsr RS3_MAIZE : 173- 191: iqiag Rla--GkeiAraEcikkGrlP lqtir RS3_MARPO : 166- 184: iqiag Rln--GaeiArvEwareGrvP lqtir RS3_MYCCA : 158- 176: tavsg Rlg--GvemArtEgyleGsvP lstlr RS3_ORYSA : 188- 206: vkiag Rla--GkeiAraEcikkGrlP lqtir RS3_PINTH : 168- 186: iqiag Rld--GkeiArvEwdrgGrvP lqtir RS3_SPIOL : 167- 185: iqiag Rid--GkeiAriEwireGrvP lqtir RS3_THEMA : 156- 174: vmvag Rlg--GaeiArrEwylrGrlP lqkik RS3_TOBAC : 167- 185: iqiag Rid--GkeiArvEwireGrvP lqtir RT03_MAIZE : 496- 514: iccsg Rlg--GaeiArtEcgkyGktS cnvfn RT03_MARPO : 363- 381: igcsg Rln--GaeiAktEckkyGetS lhvfs RT03_OENBE : 500- 518: iccsg Rsk--GaeiArtEcgkyGktS rnvfn RT03_ORYSA : 475- 493: iccsg Rlg--GaeiArtEcgkyGktS cnvfn RT03_PETHY : 499- 517: iccsg Rle--GaeiArtEcgkyGktS rnvfn B 2: 18.2774 31( 31) G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] Occurences: 31(31) RS3_ACHAX : 163- 178: sqrlg GremArtEgyseGqvP lhtlr RS3_ACHFL : 162- 177: sgrlg GvemArtEgyieGsvP lstlr RS3_ACHLA : 163- 178: sgrlg GaemArsEgyseGrvP lhtlr RS3_ACHSP : 163- 178: sgrlg GaemArsEgyseGrvP lhtlr RS3_ACYKS : 132- 147: sgrlg GaeiArtEwyreGrvP lhtlr RS3_ANAAB : 164- 179: sgrlg GaeiArsEgyneGqvP lqtlr RS3_BACST : 157- 172: vrrlg GaeiArsEhyseGtvP lhtlr RS3_BACSU : 157- 172: sgrlg GadiArpEyyseGtvP lhtlr RS3_CHLEU : 743- 758: agrln GaeiArtEwvraGrvP lqtlr RS3_CHLRE : 662- 677: agrln GaeiArsEwvraGrvP lqtlr RS3_CYAPA : 161- 176: sgrln GaeiArsEwsreGrvP lqtlr RS3_ECOLI : 158- 173: sgrlg GaeiArtEwyreGrvP lhtlr RS3_EPIVI : 172- 187: sgrid GkeiArvEwireGrvP lqtiq RS3_EUGGR : 172- 187: sgrln GieiArtEwfreGrvP lhtlr RS3_GRATE : 161- 176: sgrln GseiAriEsvreGrvP lqtlr RS3_HAEIN : 158- 173: sgrlg GaeiArsEwyreGrvP lhtlr RS3_HALHA : 124- 137: rimes GalgA--EivlsGkvT gnrgr RS3_HALMA : 124- 137: rimes GalgA--EivlsGkvT garsr RS3_MAIZE : 176- 191: agrla GkeiAraEcikkGrlP lqtir RS3_MARPO : 169- 184: agrln GaeiArvEwareGrvP lqtir RS3_MYCCA : 161- 176: sgrlg GvemArtEgyleGsvP lstlr RS3_ORYSA : 191- 206: agrla GkeiAraEcikkGrlP lqtir RS3_PINTH : 171- 186: agrld GkeiArvEwdrgGrvP lqtir RS3_SPIOL : 170- 185: agrid GkeiAriEwireGrvP lqtir RS3_THEMA : 159- 174: agrlg GaeiArrEwylrGrlP lqkik RS3_TOBAC : 170- 185: agrid GkeiArvEwireGrvP lqtir RT03_MAIZE : 499- 514: sgrlg GaeiArtEcgkyGktS cnvfn RT03_MARPO : 366- 381: sgrln GaeiAktEckkyGetS lhvfs RT03_OENBE : 503- 518: sgrsk GaeiArtEcgkyGktS rnvfn RT03_ORYSA : 478- 493: sgrlg GaeiArtEcgkyGktS cnvfn RT03_PETHY : 502- 517: sgrle GaeiArtEcgkyGktS rnvfn C 3: 17.9766 33( 31) R-x(2,3)-G-x(3,4)-A-x(2)-[EP]-x(4)-[GI] Occurences: 33(31) RS3_ACHAX : 160- 175: ktlsq Rlg-Grem-ArtEgyseG qvplh RS3_ACHFL : 159- 174: tsvsg Rlg-Gvem-ArtEgyieG svpls RS3_ACHLA : 160- 175: tlvsg Rlg-Gaem-ArsEgyseG rvplh RS3_ACHSP : 160- 175: tlvsg Rlg-Gaem-ArsEgyseG rvplh RS3_ACYKS : 129- 144: vdvsg Rlg-Gaei-ArtEwyreG rvplh RS3_ANAAB : 161- 176: tlisg Rlg-Gaei-ArsEgyneG qvplq RS3_BACST : 153- 169: ktmvv RrlgGaei-ArsEhyseG tvplh RS3_BACST : 153- 169: ktmvv Rrl-GgaeiArsEhyseG tvplh RS3_BACST : 154- 169: tmvvr Rlg-Gaei-ArsEhyseG tvplh RS3_BACSU : 154- 169: tmvsg Rlg-Gadi-ArpEyyseG tvplh RS3_CHLEU : 740- 755: iqvag Rln-Gaei-ArtEwvraG rvplq RS3_CHLRE : 659- 674: iqvag Rln-Gaei-ArsEwvraG rvplq RS3_CYAPA : 158- 173: iqisg Rln-Gaei-ArsEwsreG rvplq RS3_ECOLI : 155- 170: vevsg Rlg-Gaei-ArtEwyreG rvplh RS3_EPIVI : 169- 184: vqisg Rid-Gkei-ArvEwireG rvplq RS3_EUGGR : 169- 184: vqvsg Rln-Giei-ArtEwfreG rvplh RS3_GRATE : 158- 173: iqvsg Rln-Gsei-AriEsvreG rvplq RS3_HAEIN : 155- 170: vevsg Rlg-Gaei-ArsEwyreG rvplh RS3_HALHA : 27- 44: aeela RagyGsmelAptPmgmqI vlkae RS3_HALMA : 27- 44: aeelg RagyGgmdvAktPmgtqI vlkae RS3_MAIZE : 173- 188: iqiag Rla-Gkei-AraEcikkG rlplq RS3_MARPO : 166- 181: iqiag Rln-Gaei-ArvEwareG rvplq RS3_MYCCA : 158- 173: tavsg Rlg-Gvem-ArtEgyleG svpls RS3_ORYSA : 188- 203: vkiag Rla-Gkei-AraEcikkG rlplq RS3_PINTH : 168- 183: iqiag Rld-Gkei-ArvEwdrgG rvplq RS3_SPIOL : 167- 182: iqiag Rid-Gkei-AriEwireG rvplq RS3_THEMA : 156- 171: vmvag Rlg-Gaei-ArrEwylrG rlplq RS3_TOBAC : 52- 69: vqknm RtssGvegiAriEiqkrI dliqv RS3_TOBAC : 167- 182: iqiag Rid-Gkei-ArvEwireG rvplq RT03_MAIZE : 496- 511: iccsg Rlg-Gaei-ArtEcgkyG ktscn RT03_MARPO : 363- 378: igcsg Rln-Gaei-AktEckkyG etslh RT03_OENBE : 500- 515: iccsg Rsk-Gaei-ArtEcgkyG ktsrn RT03_ORYSA : 475- 490: iccsg Rlg-Gaei-ArtEcgkyG ktscn RT03_PETHY : 499- 514: iccsg Rle-Gaei-ArtEcgkyG ktsrn D 4: 17.7774 45( 31) G-x(3,4)-A-x(0,2)-E-x(4)-G-x(2)-[PST] Occurences: 45(31) RS3_ACHAX : 162- 178: lsqrl GgremArtEgyseGqvP lhtlr RS3_ACHAX : 163- 178: sqrlg Grem-ArtEgyseGqvP lhtlr RS3_ACHFL : 161- 177: vsgrl GgvemArtEgyieGsvP lstlr RS3_ACHFL : 162- 177: sgrlg Gvem-ArtEgyieGsvP lstlr RS3_ACHLA : 162- 178: vsgrl GgaemArsEgyseGrvP lhtlr RS3_ACHLA : 163- 178: sgrlg Gaem-ArsEgyseGrvP lhtlr RS3_ACHSP : 162- 178: vsgrl GgaemArsEgyseGrvP lhtlr RS3_ACHSP : 163- 178: sgrlg Gaem-ArsEgyseGrvP lhtlr RS3_ACYKS : 131- 147: vsgrl GgaeiArtEwyreGrvP lhtlr RS3_ACYKS : 132- 147: sgrlg Gaei-ArtEwyreGrvP lhtlr RS3_ANAAB : 163- 179: isgrl GgaeiArsEgyneGqvP lqtlr RS3_ANAAB : 164- 179: sgrlg Gaei-ArsEgyneGqvP lqtlr RS3_BACST : 156- 172: vvrrl GgaeiArsEhyseGtvP lhtlr RS3_BACST : 157- 172: vrrlg Gaei-ArsEhyseGtvP lhtlr RS3_BACSU : 156- 172: vsgrl GgadiArpEyyseGtvP lhtlr RS3_BACSU : 157- 172: sgrlg Gadi-ArpEyyseGtvP lhtlr RS3_CHLEU : 743- 758: agrln Gaei-ArtEwvraGrvP lqtlr RS3_CHLRE : 662- 677: agrln Gaei-ArsEwvraGrvP lqtlr RS3_CYAPA : 161- 176: sgrln Gaei-ArsEwsreGrvP lqtlr RS3_ECOLI : 157- 173: vsgrl GgaeiArtEwyreGrvP lhtlr RS3_ECOLI : 158- 173: sgrlg Gaei-ArtEwyreGrvP lhtlr RS3_EPIVI : 172- 187: sgrid Gkei-ArvEwireGrvP lqtiq RS3_EUGGR : 172- 187: sgrln Giei-ArtEwfreGrvP lhtlr RS3_GRATE : 161- 176: sgrln Gsei-AriEsvreGrvP lqtlr RS3_HAEIN : 157- 173: vsgrl GgaeiArsEwyreGrvP lhtlr RS3_HAEIN : 158- 173: sgrlg Gaei-ArsEwyreGrvP lhtlr RS3_HALHA : 124- 137: rimes Galg-A--EivlsGkvT gnrgr RS3_HALMA : 124- 137: rimes Galg-A--EivlsGkvT garsr RS3_MAIZE : 176- 191: agrla Gkei-AraEcikkGrlP lqtir RS3_MARPO : 169- 184: agrln Gaei-ArvEwareGrvP lqtir RS3_MYCCA : 160- 176: vsgrl GgvemArtEgyleGsvP lstlr RS3_MYCCA : 161- 176: sgrlg Gvem-ArtEgyleGsvP lstlr RS3_ORYSA : 191- 206: agrla Gkei-AraEcikkGrlP lqtir RS3_PINTH : 171- 186: agrld Gkei-ArvEwdrgGrvP lqtir RS3_SPIOL : 170- 185: agrid Gkei-AriEwireGrvP lqtir RS3_THEMA : 158- 174: vagrl GgaeiArrEwylrGrlP lqkik RS3_THEMA : 159- 174: agrlg Gaei-ArrEwylrGrlP lqkik RS3_TOBAC : 170- 185: agrid Gkei-ArvEwireGrvP lqtir RT03_MAIZE : 498- 514: csgrl GgaeiArtEcgkyGktS cnvfn RT03_MAIZE : 499- 514: sgrlg Gaei-ArtEcgkyGktS cnvfn RT03_MARPO : 366- 381: sgrln Gaei-AktEckkyGetS lhvfs RT03_OENBE : 503- 518: sgrsk Gaei-ArtEcgkyGktS rnvfn RT03_ORYSA : 477- 493: csgrl GgaeiArtEcgkyGktS cnvfn RT03_ORYSA : 478- 493: sgrlg Gaei-ArtEcgkyGktS cnvfn RT03_PETHY : 502- 517: sgrle Gaei-ArtEcgkyGktS rnvfn E 5: 15.6802 31( 31) G-x(2,3)-A-x(1,2)-E-x(4)-G Occurences: 31(31) RS3_ACHAX : 163- 175: sqrlg GremArtEgyseG qvplh RS3_ACHFL : 162- 174: sgrlg GvemArtEgyieG svpls RS3_ACHLA : 163- 175: sgrlg GaemArsEgyseG rvplh RS3_ACHSP : 163- 175: sgrlg GaemArsEgyseG rvplh RS3_ACYKS : 132- 144: sgrlg GaeiArtEwyreG rvplh RS3_ANAAB : 164- 176: sgrlg GaeiArsEgyneG qvplq RS3_BACST : 157- 169: vrrlg GaeiArsEhyseG tvplh RS3_BACSU : 157- 169: sgrlg GadiArpEyyseG tvplh RS3_CHLEU : 743- 755: agrln GaeiArtEwvraG rvplq RS3_CHLRE : 662- 674: agrln GaeiArsEwvraG rvplq RS3_CYAPA : 161- 173: sgrln GaeiArsEwsreG rvplq RS3_ECOLI : 158- 170: sgrlg GaeiArtEwyreG rvplh RS3_EPIVI : 172- 184: sgrid GkeiArvEwireG rvplq RS3_EUGGR : 172- 184: sgrln GieiArtEwfreG rvplh RS3_GRATE : 161- 173: sgrln GseiAriEsvreG rvplq RS3_HAEIN : 158- 170: sgrlg GaeiArsEwyreG rvplh RS3_HALHA : 155- 165: yikhn Gep-Ae-EivdhG kgvav RS3_HALMA : 155- 165: yvkhn Gep-Ae-EivdsG vgvav RS3_MAIZE : 176- 188: agrla GkeiAraEcikkG rlplq RS3_MARPO : 169- 181: agrln GaeiArvEwareG rvplq RS3_MYCCA : 161- 173: sgrlg GvemArtEgyleG svpls RS3_ORYSA : 191- 203: agrla GkeiAraEcikkG rlplq RS3_PINTH : 171- 183: agrld GkeiArvEwdrgG rvplq RS3_SPIOL : 170- 182: agrid GkeiAriEwireG rvplq RS3_THEMA : 159- 171: agrlg GaeiArrEwylrG rlplq RS3_TOBAC : 170- 182: agrid GkeiArvEwireG rvplq RT03_MAIZE : 499- 511: sgrlg GaeiArtEcgkyG ktscn RT03_MARPO : 366- 378: sgrln GaeiAktEckkyG etslh RT03_OENBE : 503- 515: sgrsk GaeiArtEcgkyG ktsrn RT03_ORYSA : 478- 490: sgrlg GaeiArtEcgkyG ktscn RT03_PETHY : 502- 514: sgrle GaeiArtEcgkyG ktsrn F 6: 14.6802 32( 31) R-x(2,4)-G-x(3)-A-x(0,2)-E Occurences: 32(31) RS3_ACHAX : 160- 170: ktlsq Rlg--GremArtE gyseg RS3_ACHFL : 159- 169: tsvsg Rlg--GvemArtE gyieg RS3_ACHLA : 160- 170: tlvsg Rlg--GaemArsE gyseg RS3_ACHSP : 160- 170: tlvsg Rlg--GaemArsE gyseg RS3_ACYKS : 129- 139: vdvsg Rlg--GaeiArtE wyreg RS3_ANAAB : 161- 171: tlisg Rlg--GaeiArsE gyneg RS3_BACST : 153- 164: ktmvv Rrlg-GaeiArsE hyseg RS3_BACST : 154- 164: tmvvr Rlg--GaeiArsE hyseg RS3_BACSU : 154- 164: tmvsg Rlg--GadiArpE yyseg RS3_CHLEU : 740- 750: iqvag Rln--GaeiArtE wvrag RS3_CHLRE : 659- 669: iqvag Rln--GaeiArsE wvrag RS3_CYAPA : 158- 168: iqisg Rln--GaeiArsE wsreg RS3_ECOLI : 155- 165: vevsg Rlg--GaeiArtE wyreg RS3_EPIVI : 169- 179: vqisg Rid--GkeiArvE wireg RS3_EUGGR : 169- 179: vqvsg Rln--GieiArtE wfreg RS3_GRATE : 158- 168: iqvsg Rln--GseiAriE svreg RS3_HAEIN : 155- 165: vevsg Rlg--GaeiArsE wyreg RS3_HALHA : 119- 129: httid RimesGalgA--E ivlsg RS3_HALMA : 119- 129: httid RimesGalgA--E ivlsg RS3_MAIZE : 173- 183: iqiag Rla--GkeiAraE cikkg RS3_MARPO : 166- 176: iqiag Rln--GaeiArvE wareg RS3_MYCCA : 158- 168: tavsg Rlg--GvemArtE gyleg RS3_ORYSA : 188- 198: vkiag Rla--GkeiAraE cikkg RS3_PINTH : 168- 178: iqiag Rld--GkeiArvE wdrgg RS3_SPIOL : 167- 177: iqiag Rid--GkeiAriE wireg RS3_THEMA : 156- 166: vmvag Rlg--GaeiArrE wylrg RS3_TOBAC : 167- 177: iqiag Rid--GkeiArvE wireg RT03_MAIZE : 496- 506: iccsg Rlg--GaeiArtE cgkyg RT03_MARPO : 363- 373: igcsg Rln--GaeiAktE ckkyg RT03_OENBE : 500- 510: iccsg Rsk--GaeiArtE cgkyg RT03_ORYSA : 475- 485: iccsg Rlg--GaeiArtE cgkyg RT03_PETHY : 499- 509: iccsg Rle--GaeiArtE cgkyg G 7: 14.6787 42( 31) G-x(1,2)-G-[GIV]-K Occurences: 42(31) RS3_ACHAX : 198- 203: aqtty GilGIK vwiyh RS3_ACHFL : 148- 153: kalka GvkGIK tsvsg RS3_ACHFL : 197- 202: aptty GqiGVK vwinh RS3_ACHLA : 198- 203: astty GilGIK vwiyh RS3_ACHSP : 149- 154: ralks GakGVK tlvsg RS3_ACHSP : 198- 203: ahtty GvlGIK vwvfh RS3_ACYKS : 118- 123: namrl GakGIK vdvsg RS3_ACYKS : 167- 172: ahtty GviGVK vwifk RS3_ANAAB : 199- 204: ahtty GklGIK vwiyk RS3_BACST : 143- 148: ramrp GrkGVK tmvvr RS3_BACST : 192- 197: adtty GkiGVK vwiyr RS3_BACSU : 143- 148: rtmra GaqGVK tmvsg RS3_BACSU : 192- 197: adtty GklGVK vwiyr RS3_CHLEU : 778- 783: antiy GiiGVK vwifk RS3_CHLRE : 697- 702: antiy GiiGVK vwifk RS3_CYAPA : 147- 152: raqrr GieGIK iqisg RS3_CYAPA : 196- 201: aqtiy GvlGVK vwifk RS3_ECOLI : 144- 149: namrl GakGIK vevsg RS3_ECOLI : 193- 198: ahtty GviGVK vwifk RS3_EPIVI : 207- 212: vrtth GvlGIK iwifi RS3_EUGGR : 158- 163: qamka GaeGIK vqvsg RS3_EUGGR : 207- 212: ahtiy GvlGIK vwvyk RS3_GRATE : 196- 201: thtiy GilGVK ygylk RS3_HAEIN : 144- 149: samrl GakGIK vevsg RS3_HAEIN : 193- 198: ahtty GviGVK vwifk RS3_HALHA : 56- 60: pgmvi Gk-GGK nirki RS3_HALMA : 56- 60: pgmvi Gk-GGK nirki RS3_MAIZE : 211- 216: irtiy GvlGVK iwifv RS3_MARPO : 204- 209: aqtiy GvlGIK vwifq RS3_MYCCA : 147- 152: kalka GakGIK tavsg RS3_MYCCA : 196- 201: aptty GqiGVK vwinh RS3_ORYSA : 226- 231: irtiy GvlGVK iwifv RS3_PINTH : 206- 211: vktiy GvlGIK iwile RS3_SPIOL : 205- 210: vrtiy GvlGIK iwifm RS3_THEMA : 145- 150: namrk GaqGIK vmvag RS3_THEMA : 194- 199: awtky GtiGIK vwiyk RS3_TOBAC : 205- 210: vrtiy GvlGIK iwifl RT03_MAIZE : 534- 539: vstrd GisGVK vrisy RT03_MARPO : 401- 406: astpy GilGVK vwvsy RT03_OENBE : 538- 543: vstry GilGVK vwisy RT03_ORYSA : 513- 518: vstrn GisGVK vrisy RT03_PETHY : 537- 542: vstry GisGVK vwisy H 8: 14.6314 31( 31) A-x(1,2)-E-x(4)-G-x(2)-[GPS] Occurences: 31(31) RS3_ACHAX : 167- 178: ggrem ArtEgyseGqvP lhtlr RS3_ACHFL : 166- 177: ggvem ArtEgyieGsvP lstlr RS3_ACHLA : 167- 178: ggaem ArsEgyseGrvP lhtlr RS3_ACHSP : 167- 178: ggaem ArsEgyseGrvP lhtlr RS3_ACYKS : 136- 147: ggaei ArtEwyreGrvP lhtlr RS3_ANAAB : 168- 179: ggaei ArsEgyneGqvP lqtlr RS3_BACST : 161- 172: ggaei ArsEhyseGtvP lhtlr RS3_BACSU : 161- 172: ggadi ArpEyyseGtvP lhtlr RS3_CHLEU : 747- 758: ngaei ArtEwvraGrvP lqtlr RS3_CHLRE : 666- 677: ngaei ArsEwvraGrvP lqtlr RS3_CYAPA : 165- 176: ngaei ArsEwsreGrvP lqtlr RS3_ECOLI : 162- 173: ggaei ArtEwyreGrvP lhtlr RS3_EPIVI : 176- 187: dgkei ArvEwireGrvP lqtiq RS3_EUGGR : 176- 187: ngiei ArtEwfreGrvP lhtlr RS3_GRATE : 165- 176: ngsei AriEsvreGrvP lqtlr RS3_HAEIN : 162- 173: ggaei ArsEwyreGrvP lhtlr RS3_HALHA : 22- 32: ideff Ae-ElaraGygS melap RS3_HALMA : 22- 32: ideff Ae-ElgraGygG mdvak RS3_MAIZE : 180- 191: agkei AraEcikkGrlP lqtir RS3_MARPO : 173- 184: ngaei ArvEwareGrvP lqtir RS3_MYCCA : 165- 176: ggvem ArtEgyleGsvP lstlr RS3_ORYSA : 195- 206: agkei AraEcikkGrlP lqtir RS3_PINTH : 175- 186: dgkei ArvEwdrgGrvP lqtir RS3_SPIOL : 174- 185: dgkei AriEwireGrvP lqtir RS3_THEMA : 163- 174: ggaei ArrEwylrGrlP lqkik RS3_TOBAC : 174- 185: dgkei ArvEwireGrvP lqtir RT03_MAIZE : 503- 514: ggaei ArtEcgkyGktS cnvfn RT03_MARPO : 370- 381: ngaei AktEckkyGetS lhvfs RT03_OENBE : 507- 518: kgaei ArtEcgkyGktS rnvfn RT03_ORYSA : 482- 493: ggaei ArtEcgkyGktS cnvfn RT03_PETHY : 506- 517: egaei ArtEcgkyGktS rnvfn I 9: 14.6074 31( 31) A-x(2,3)-E-x(4)-G-x(2)-[PST] Occurences: 31(31) RS3_ACHAX : 167- 178: ggrem Art-EgyseGqvP lhtlr RS3_ACHFL : 166- 177: ggvem Art-EgyieGsvP lstlr RS3_ACHLA : 167- 178: ggaem Ars-EgyseGrvP lhtlr RS3_ACHSP : 167- 178: ggaem Ars-EgyseGrvP lhtlr RS3_ACYKS : 136- 147: ggaei Art-EwyreGrvP lhtlr RS3_ANAAB : 168- 179: ggaei Ars-EgyneGqvP lqtlr RS3_BACST : 161- 172: ggaei Ars-EhyseGtvP lhtlr RS3_BACSU : 161- 172: ggadi Arp-EyyseGtvP lhtlr RS3_CHLEU : 747- 758: ngaei Art-EwvraGrvP lqtlr RS3_CHLRE : 666- 677: ngaei Ars-EwvraGrvP lqtlr RS3_CYAPA : 165- 176: ngaei Ars-EwsreGrvP lqtlr RS3_ECOLI : 162- 173: ggaei Art-EwyreGrvP lhtlr RS3_EPIVI : 176- 187: dgkei Arv-EwireGrvP lqtiq RS3_EUGGR : 176- 187: ngiei Art-EwfreGrvP lhtlr RS3_GRATE : 165- 176: ngsei Ari-EsvreGrvP lqtlr RS3_HAEIN : 162- 173: ggaei Ars-EwyreGrvP lhtlr RS3_HALHA : 125- 137: imesg AlgaEivlsGkvT gnrgr RS3_HALMA : 125- 137: imesg AlgaEivlsGkvT garsr RS3_MAIZE : 180- 191: agkei Ara-EcikkGrlP lqtir RS3_MARPO : 173- 184: ngaei Arv-EwareGrvP lqtir RS3_MYCCA : 165- 176: ggvem Art-EgyleGsvP lstlr RS3_ORYSA : 195- 206: agkei Ara-EcikkGrlP lqtir RS3_PINTH : 175- 186: dgkei Arv-EwdrgGrvP lqtir RS3_SPIOL : 174- 185: dgkei Ari-EwireGrvP lqtir RS3_THEMA : 163- 174: ggaei Arr-EwylrGrlP lqkik RS3_TOBAC : 174- 185: dgkei Arv-EwireGrvP lqtir RT03_MAIZE : 503- 514: ggaei Art-EcgkyGktS cnvfn RT03_MARPO : 370- 381: ngaei Akt-EckkyGetS lhvfs RT03_OENBE : 507- 518: kgaei Art-EcgkyGktS rnvfn RT03_ORYSA : 482- 493: ggaei Art-EcgkyGktS cnvfn RT03_PETHY : 506- 517: egaei Art-EcgkyGktS rnvfn J 10: 14.1720 45( 31) K-x(4,5)-G-x(0,1)-R-[ILV] Occurences: 45(31) RS3_ACHAX : 4- 12: mgq Kvnpi-GfRV gvird RS3_ACHFL : 153- 160: gvkgi Ktsvs-G-RL ggvem RS3_ACHLA : 4- 12: mgq Ktnpn-GlRL giirt RS3_ACHSP : 4- 12: mgq Ktnpn-GlRL giirs RS3_ACHSP : 154- 161: gakgv Ktlvs-G-RL ggaem RS3_ACYKS : 123- 130: gakgi Kvdvs-G-RL ggaei RS3_ANAAB : 4- 12: mgq Kvspm-GlRV ginre RS3_ANAAB : 155- 162: gakga Ktlis-G-RL ggaei RS3_BACST : 3- 11: gq Kvnpi-GlRI giird RS3_BACSU : 3- 11: gq Kvnpv-GlRI gvird RS3_BACSU : 148- 155: gaqgv Ktmvs-G-RL ggadi RS3_CHLEU : 4- 12: mgq Kvhps-GfRV gitkk RS3_CHLEU : 734- 741: eikgv Kiqva-G-RL ngaei RS3_CHLRE : 4- 12: mgq Kvhpl-GfRV gitkk RS3_CHLRE : 653- 660: rvkgv Kiqva-G-RL ngaei RS3_CYAPA : 4- 12: mgq Kihpi-GfRL gitqk RS3_CYAPA : 152- 159: giegi Kiqis-G-RL ngaei RS3_ECOLI : 3- 11: gq Kvhpn-GiRL givkp RS3_ECOLI : 149- 156: gakgi Kvevs-G-RL ggaei RS3_EPIVI : 4- 12: mgq Kinpl-GfRL gttqs RS3_EUGGR : 4- 12: mgq Kvhpl-GfRL gitks RS3_EUGGR : 163- 170: gaegi Kvqvs-G-RL ngiei RS3_GRATE : 4- 12: mgq Kthpl-GfRI gitrd RS3_GRATE : 152- 159: knqgi Kiqvs-G-RL ngsei RS3_HAEIN : 3- 11: gq Kvhph-GiRL givkp RS3_HAEIN : 149- 156: gakgi Kvevs-G-RL ggaei RS3_HALHA : 135- 143: ivlsg KvtgnrG-RV ekfnr RS3_HALMA : 172- 180: gvavm Klgti-GvRV kiipp RS3_MAIZE : 4- 12: mgq Kinpl-GfRL gttqn RS3_MAIZE : 167- 174: dikgi Kiqia-G-RL agkei RS3_MARPO : 4- 12: mgq Kinpl-GfRL gitqn RS3_MARPO : 160- 167: nikgi Kiqia-G-RL ngaei RS3_MYCCA : 152- 159: gakgi Ktavs-G-RL ggvem RS3_ORYSA : 4- 12: mgq Kinpl-GfRL gttqn RS3_ORYSA : 182- 189: dikgv Kvkia-G-RL agkei RS3_PINTH : 4- 12: maq Kinpl-GfRL gvtqn RS3_SPIOL : 4- 12: mgq Kinpl-GfRL gttqs RS3_THEMA : 4- 12: mgq Kvhpr-GfRL glsad RS3_THEMA : 150- 157: gaqgi Kvmva-G-RL ggaei RS3_TOBAC : 4- 12: mgq Kinpl-GfRL gttqg RT03_MAIZE : 382- 389: melie Kfidl-G-RI gklik RT03_MARPO : 349- 358: fkqik KcpyvkGiRI gcsgr RT03_OENBE : 487- 495: iplvm Kkgve-GiRI ccsgr RT03_ORYSA : 361- 368: melie Kfiyl-G-RI gklik RT03_PETHY : 486- 494: iplvm Kkgve-GiRI ccsgr K 11: 12.0102 52( 31) G-x(2)-G-x(0,1)-K Occurences: 52(31) RS3_ACHAX : 198- 203: aqtty GilGiK vwiyh RS3_ACHFL : 78- 82: paivl GqeG-K nvsni RS3_ACHFL : 148- 153: kalka GvkGiK tsvsg RS3_ACHFL : 197- 202: aptty GqiGvK vwinh RS3_ACHLA : 198- 203: astty GilGiK vwiyh RS3_ACHSP : 149- 154: ralks GakGvK tlvsg RS3_ACHSP : 198- 203: ahtty GvlGiK vwvfh RS3_ACYKS : 118- 123: namrl GakGiK vdvsg RS3_ACYKS : 167- 172: ahtty GviGvK vwifk RS3_ANAAB : 150- 155: ralka GakGaK tlisg RS3_ANAAB : 199- 204: ahtty GklGiK vwiyk RS3_BACST : 143- 148: ramrp GrkGvK tmvvr RS3_BACST : 192- 197: adtty GkiGvK vwiyr RS3_BACSU : 143- 148: rtmra GaqGvK tmvsg RS3_BACSU : 192- 197: adtty GklGvK vwiyr RS3_CHLEU : 778- 783: antiy GiiGvK vwifk RS3_CHLRE : 697- 702: antiy GiiGvK vwifk RS3_CYAPA : 147- 152: raqrr GieGiK iqisg RS3_CYAPA : 196- 201: aqtiy GvlGvK vwifk RS3_ECOLI : 144- 149: namrl GakGiK vevsg RS3_ECOLI : 193- 198: ahtty GviGvK vwifk RS3_EPIVI : 207- 212: vrtth GvlGiK iwifi RS3_EUGGR : 158- 163: qamka GaeGiK vqvsg RS3_EUGGR : 207- 212: ahtiy GvlGiK vwvyk RS3_GRATE : 196- 201: thtiy GilGvK ygylk RS3_HAEIN : 144- 149: samrl GakGiK vevsg RS3_HAEIN : 193- 198: ahtty GviGvK vwifk RS3_HALHA : 56- 60: pgmvi GkgG-K nirki RS3_HALMA : 56- 60: pgmvi GkgG-K nirki RS3_MAIZE : 211- 216: irtiy GvlGvK iwifv RS3_MARPO : 204- 209: aqtiy GvlGiK vwifq RS3_MYCCA : 77- 81: paivl GqeG-K nieki RS3_MYCCA : 147- 152: kalka GakGiK tavsg RS3_MYCCA : 196- 201: aptty GqiGvK vwinh RS3_ORYSA : 226- 231: irtiy GvlGvK iwifv RS3_PINTH : 206- 211: vktiy GvlGiK iwile RS3_SPIOL : 205- 210: vrtiy GvlGiK iwifm RS3_THEMA : 145- 150: namrk GaqGiK vmvag RS3_THEMA : 194- 199: awtky GtiGiK vwiyk RS3_TOBAC : 205- 210: vrtiy GvlGiK iwifl RT03_MAIZE : 387- 391: kfidl GriG-K likgi RT03_MAIZE : 508- 512: artec GkyG-K tscnv RT03_MAIZE : 534- 539: vstrd GisGvK vrisy RT03_MARPO : 401- 406: astpy GilGvK vwvsy RT03_OENBE : 512- 516: artec GkyG-K tsrnv RT03_OENBE : 538- 543: vstry GilGvK vwisy RT03_ORYSA : 366- 370: kfiyl GriG-K likgi RT03_ORYSA : 487- 491: artec GkyG-K tscnv RT03_ORYSA : 513- 518: vstrn GisGvK vrisy RT03_PETHY : 97- 101: ekgrw GafG-K vgpig RT03_PETHY : 511- 515: artec GkyG-K tsrnv RT03_PETHY : 537- 542: vstry GisGvK vwisy L 12: 12.0102 32( 31) T-x(2)-G-x(4,5)-K Occurences: 32(31) RS3_ACHAX : 195- 203: taeaq TtyGilgi-K vwiyh RS3_ACHFL : 194- 202: lyeap TtyGqigv-K vwinh RS3_ACHLA : 195- 203: taeas TtyGilgi-K vwiyh RS3_ACHSP : 195- 203: taeah TtyGvlgi-K vwvfh RS3_ACYKS : 164- 172: tseah TtyGvigv-K vwifk RS3_ANAAB : 196- 204: vaeah TtyGklgi-K vwiyk RS3_BACST : 189- 197: taead TtyGkigv-K vwiyr RS3_BACSU : 189- 197: tsead TtyGklgv-K vwiyr RS3_CHLEU : 403- 412: lfley TskGfdsnnK avlsl RS3_CHLEU : 775- 783: yrtan TiyGiigv-K vwifk RS3_CHLRE : 694- 702: yrtan TiyGiigv-K vwifk RS3_CYAPA : 193- 201: ykraq TiyGvlgv-K vwifk RS3_ECOLI : 190- 198: tseah TtyGvigv-K vwifk RS3_EPIVI : 204- 212: symvr TthGvlgi-K iwifi RS3_EUGGR : 204- 212: ndiah TiyGvlgi-K vwvyk RS3_GRATE : 193- 201: yktth TiyGilgv-K ygylk RS3_HAEIN : 190- 198: taeah TtyGvigv-K vwifk RS3_HALHA : 38- 47: melap TpmGmqivlK aekpg RS3_HALMA : 38- 47: mdvak TpmGtqivlK aekpg RS3_MAIZE : 208- 216: cypir TiyGvlgv-K iwifv RS3_MARPO : 201- 209: yyaaq TiyGvlgi-K vwifq RS3_MYCCA : 193- 201: lyeap TtyGqigv-K vwinh RS3_ORYSA : 223- 231: cypir TiyGvlgv-K iwifv RS3_PINTH : 203- 211: yypvk TiyGvlgi-K iwile RS3_SPIOL : 202- 210: aytvr TiyGvlgi-K iwifm RS3_THEMA : 191- 199: tataw TkyGtigi-K vwiyk RS3_TOBAC : 202- 210: sytvr TiyGvlgi-K iwifl RT03_MAIZE : 531- 539: paevs TrdGisgv-K vrisy RT03_MARPO : 398- 406: ktqas TpyGilgv-K vwvsy RT03_OENBE : 535- 543: paevs TryGilgv-K vwisy RT03_ORYSA : 510- 518: laevs TrnGisgv-K vrisy RT03_PETHY : 534- 542: paevs TryGisgv-K vwisy M 13: 12.0102 36( 31) G-x(2,3)-G-x-E Occurences: 36(31) RS3_ACHAX : 79- 85: hsgkp GvviGrE aatmk RS3_ACHFL : 158- 164: ktsvs GrlgGvE marte RS3_ACHLA : 78- 84: yvskp GialGkE asvkn RS3_ACHLA : 159- 165: rtlvs GrlgGaE marse RS3_ACHSP : 159- 165: ktlvs GrlgGaE marse RS3_ACYKS : 128- 134: kvdvs GrlgGaE iarte RS3_ANAAB : 79- 85: htakp GvviGhE aetkn RS3_ANAAB : 160- 166: ktlis GrlgGaE iarse RS3_BACST : 76- 81: pgmvi Gkg-GsE vealr RS3_BACSU : 76- 81: pgmvi Gkg-GsE vealr RS3_CHLEU : 739- 745: kiqva GrlnGaE iarte RS3_CHLRE : 658- 664: kiqva GrlnGaE iarse RS3_CYAPA : 80- 85: vvvgr Ggr-GiE vlrkg RS3_CYAPA : 157- 163: kiqis GrlnGaE iarse RS3_ECOLI : 154- 160: kvevs GrlgGaE iarte RS3_EPIVI : 168- 174: qvqis GridGkE iarve RS3_EUGGR : 168- 174: kvqvs GrlnGiE iarte RS3_GRATE : 157- 163: kiqvs GrlnGsE iarie RS3_HAEIN : 154- 160: kvevs GrlgGaE iarse RS3_HALHA : 124- 129: rimes Gal-GaE ivlsg RS3_HALMA : 124- 129: rimes Gal-GaE ivlsg RS3_MAIZE : 172- 178: kiqia GrlaGkE iarae RS3_MARPO : 165- 171: kiqia GrlnGaE iarve RS3_MYCCA : 157- 163: ktavs GrlgGvE marte RS3_ORYSA : 187- 193: kvkia GrlaGkE iarae RS3_PINTH : 88- 94: lllie GrgqGiE klrnd RS3_PINTH : 167- 173: qiqia GrldGkE iarve RS3_SPIOL : 166- 172: qiqia GridGkE iarie RS3_THEMA : 78- 83: pgiii Grk-GsE itslr RS3_THEMA : 155- 161: kvmva GrlgGaE iarre RS3_TOBAC : 166- 172: qiqia GridGkE iarve RT03_MAIZE : 495- 501: riccs GrlgGaE iarte RT03_MARPO : 362- 368: rigcs GrlnGaE iakte RT03_OENBE : 499- 505: riccs GrskGaE iarte RT03_ORYSA : 474- 480: riccs GrlgGaE iarte RT03_PETHY : 498- 504: riccs GrleGaE iarte N 14: 11.5102 31( 31) G-x(3)-A-x(0,2)-E Occurences: 31(31) RS3_ACHAX : 163- 170: sqrlg GremArtE gyseg RS3_ACHFL : 162- 169: sgrlg GvemArtE gyieg RS3_ACHLA : 163- 170: sgrlg GaemArsE gyseg RS3_ACHSP : 163- 170: sgrlg GaemArsE gyseg RS3_ACYKS : 132- 139: sgrlg GaeiArtE wyreg RS3_ANAAB : 164- 171: sgrlg GaeiArsE gyneg RS3_BACST : 157- 164: vrrlg GaeiArsE hyseg RS3_BACSU : 157- 164: sgrlg GadiArpE yyseg RS3_CHLEU : 743- 750: agrln GaeiArtE wvrag RS3_CHLRE : 662- 669: agrln GaeiArsE wvrag RS3_CYAPA : 161- 168: sgrln GaeiArsE wsreg RS3_ECOLI : 158- 165: sgrlg GaeiArtE wyreg RS3_EPIVI : 172- 179: sgrid GkeiArvE wireg RS3_EUGGR : 172- 179: sgrln GieiArtE wfreg RS3_GRATE : 161- 168: sgrln GseiAriE svreg RS3_HAEIN : 158- 165: sgrlg GaeiArsE wyreg RS3_HALHA : 124- 129: rimes GalgA--E ivlsg RS3_HALMA : 124- 129: rimes GalgA--E ivlsg RS3_MAIZE : 176- 183: agrla GkeiAraE cikkg RS3_MARPO : 169- 176: agrln GaeiArvE wareg RS3_MYCCA : 161- 168: sgrlg GvemArtE gyleg RS3_ORYSA : 191- 198: agrla GkeiAraE cikkg RS3_PINTH : 171- 178: agrld GkeiArvE wdrgg RS3_SPIOL : 170- 177: agrid GkeiAriE wireg RS3_THEMA : 159- 166: agrlg GaeiArrE wylrg RS3_TOBAC : 170- 177: agrid GkeiArvE wireg RT03_MAIZE : 499- 506: sgrlg GaeiArtE cgkyg RT03_MARPO : 366- 373: sgrln GaeiAktE ckkyg RT03_OENBE : 503- 510: sgrsk GaeiArtE cgkyg RT03_ORYSA : 478- 485: sgrlg GaeiArtE cgkyg RT03_PETHY : 502- 509: sgrle GaeiArtE cgkyg O 15: 11.5102 40( 31) G-x(2,3)-A-x(1,2)-E Occurences: 40(31) RS3_ACHAX : 163- 170: sqrlg GremArtE gyseg RS3_ACHFL : 162- 169: sgrlg GvemArtE gyieg RS3_ACHLA : 163- 170: sgrlg GaemArsE gyseg RS3_ACHSP : 163- 170: sgrlg GaemArsE gyseg RS3_ACYKS : 132- 139: sgrlg GaeiArtE wyreg RS3_ACYKS : 182- 188: kgeil GgmaAv-E qpepa RS3_ACYKS : 182- 188: kgeil Ggm-AavE qpepa RS3_ACYKS : 183- 188: geilg Gma-Av-E qpepa RS3_ANAAB : 164- 171: sgrlg GaeiArsE gyneg RS3_BACST : 157- 164: vrrlg GaeiArsE hyseg RS3_BACSU : 157- 164: sgrlg GadiArpE yyseg RS3_CHLEU : 743- 750: agrln GaeiArtE wvrag RS3_CHLRE : 662- 669: agrln GaeiArsE wvrag RS3_CYAPA : 161- 168: sgrln GaeiArsE wsreg RS3_ECOLI : 158- 165: sgrlg GaeiArtE wyreg RS3_ECOLI : 208- 214: kgeil GgmaAv-E qpekp RS3_ECOLI : 208- 214: kgeil Ggm-AavE qpekp RS3_ECOLI : 209- 214: geilg Gma-Av-E qpekp RS3_EPIVI : 172- 179: sgrid GkeiArvE wireg RS3_EUGGR : 172- 179: sgrln GieiArtE wfreg RS3_GRATE : 161- 168: sgrln GseiAriE svreg RS3_HAEIN : 158- 165: sgrlg GaeiArsE wyreg RS3_HALHA : 155- 160: yikhn Gep-Ae-E ivdhg RS3_HALHA : 221- 227: eelle Ged-AdaE dadad RS3_HALMA : 155- 160: yvkhn Gep-Ae-E ivdsg RS3_MAIZE : 172- 178: kiqia Grl-AgkE iarae RS3_MAIZE : 176- 183: agrla GkeiAraE cikkg RS3_MARPO : 57- 63: nssny Ggi-ArvE ikrkt RS3_MARPO : 169- 176: agrln GaeiArvE wareg RS3_MYCCA : 161- 168: sgrlg GvemArtE gyleg RS3_ORYSA : 187- 193: kvkia Grl-AgkE iarae RS3_ORYSA : 191- 198: agrla GkeiAraE cikkg RS3_PINTH : 58- 64: sssny Ggi-ArvE irrki RS3_PINTH : 171- 178: agrld GkeiArvE wdrgg RS3_SPIOL : 170- 177: agrid GkeiAriE wireg RS3_THEMA : 159- 166: agrlg GaeiArrE wylrg RS3_TOBAC : 170- 177: agrid GkeiArvE wireg RT03_MAIZE : 499- 506: sgrlg GaeiArtE cgkyg RT03_MARPO : 366- 373: sgrln GaeiAktE ckkyg RT03_OENBE : 503- 510: sgrsk GaeiArtE cgkyg RT03_ORYSA : 478- 485: sgrlg GaeiArtE cgkyg RT03_PETHY : 502- 509: sgrle GaeiArtE cgkyg P 16: 11.5102 47( 31) T-x(1,2)-G-x(4,5)-K Occurences: 47(31) RS3_ACHAX : 195- 203: taeaq TtyGilgi-K vwiyh RS3_ACHAX : 196- 203: aeaqt Ty-Gilgi-K vwiyh RS3_ACHFL : 194- 202: lyeap TtyGqigv-K vwinh RS3_ACHFL : 195- 202: yeapt Ty-Gqigv-K vwinh RS3_ACHLA : 195- 203: taeas TtyGilgi-K vwiyh RS3_ACHLA : 196- 203: aeast Ty-Gilgi-K vwiyh RS3_ACHSP : 195- 203: taeah TtyGvlgi-K vwvfh RS3_ACHSP : 196- 203: aeaht Ty-Gvlgi-K vwvfh RS3_ACYKS : 164- 172: tseah TtyGvigv-K vwifk RS3_ACYKS : 165- 172: seaht Ty-Gvigv-K vwifk RS3_ANAAB : 196- 204: vaeah TtyGklgi-K vwiyk RS3_ANAAB : 197- 204: aeaht Ty-Gklgi-K vwiyk RS3_BACST : 189- 197: taead TtyGkigv-K vwiyr RS3_BACST : 190- 197: aeadt Ty-Gkigv-K vwiyr RS3_BACSU : 189- 197: tsead TtyGklgv-K vwiyr RS3_BACSU : 190- 197: seadt Ty-Gklgv-K vwiyr RS3_CHLEU : 57- 64: llnps Tk-Ggsap-K rhqna RS3_CHLEU : 195- 202: ttran Tt-Gtrqk-K lsskt RS3_CHLEU : 403- 412: lfley TskGfdsnnK avlsl RS3_CHLEU : 775- 783: yrtan TiyGiigv-K vwifk RS3_CHLRE : 180- 187: qtqkp Tk-Gkfvf-K gkrkq RS3_CHLRE : 694- 702: yrtan TiyGiigv-K vwifk RS3_CYAPA : 193- 201: ykraq TiyGvlgv-K vwifk RS3_ECOLI : 190- 198: tseah TtyGvigv-K vwifk RS3_ECOLI : 191- 198: seaht Ty-Gvigv-K vwifk RS3_EPIVI : 204- 212: symvr TthGvlgi-K iwifi RS3_EPIVI : 205- 212: ymvrt Th-Gvlgi-K iwifi RS3_EUGGR : 204- 212: ndiah TiyGvlgi-K vwvyk RS3_GRATE : 193- 201: yktth TiyGilgv-K ygylk RS3_HAEIN : 190- 198: taeah TtyGvigv-K vwifk RS3_HAEIN : 191- 198: aeaht Ty-Gvigv-K vwifk RS3_HALHA : 38- 47: melap TpmGmqivlK aekpg RS3_HALMA : 38- 47: mdvak TpmGtqivlK aekpg RS3_MAIZE : 208- 216: cypir TiyGvlgv-K iwifv RS3_MARPO : 201- 209: yyaaq TiyGvlgi-K vwifq RS3_MYCCA : 193- 201: lyeap TtyGqigv-K vwinh RS3_MYCCA : 194- 201: yeapt Ty-Gqigv-K vwinh RS3_ORYSA : 223- 231: cypir TiyGvlgv-K iwifv RS3_PINTH : 203- 211: yypvk TiyGvlgi-K iwile RS3_SPIOL : 202- 210: aytvr TiyGvlgi-K iwifm RS3_THEMA : 191- 199: tataw TkyGtigi-K vwiyk RS3_TOBAC : 202- 210: sytvr TiyGvlgi-K iwifl RT03_MAIZE : 531- 539: paevs TrdGisgv-K vrisy RT03_MARPO : 398- 406: ktqas TpyGilgv-K vwvsy RT03_OENBE : 535- 543: paevs TryGilgv-K vwisy RT03_ORYSA : 510- 518: laevs TrnGisgv-K vrisy RT03_PETHY : 534- 542: paevs TryGisgv-K vwisy Q 17: 11.5102 37( 31) G-x(0,1)-E-x(1,2)-A Occurences: 37(31) RS3_ACHAX : 83- 87: pgvvi GrEa-A tmket RS3_ACHAX : 163- 167: sqrlg GrEm-A rtegy RS3_ACHFL : 162- 166: sgrlg GvEm-A rtegy RS3_ACHLA : 163- 167: sgrlg GaEm-A rsegy RS3_ACHSP : 163- 167: sgrlg GaEm-A rsegy RS3_ACYKS : 132- 136: sgrlg GaEi-A rtewy RS3_ANAAB : 164- 168: sgrlg GaEi-A rsegy RS3_BACST : 79- 84: vigkg GsEveA lrkal RS3_BACST : 157- 161: vrrlg GaEi-A rsehy RS3_BACSU : 79- 84: vigkg GsEveA lrkal RS3_CHLEU : 743- 747: agrln GaEi-A rtewv RS3_CHLRE : 662- 666: agrln GaEi-A rsewv RS3_CYAPA : 161- 165: sgrln GaEi-A rsews RS3_ECOLI : 158- 162: sgrlg GaEi-A rtewy RS3_EPIVI : 172- 176: sgrid GkEi-A rvewi RS3_EUGGR : 172- 176: sgrln GiEi-A rtewf RS3_GRATE : 161- 165: sgrln GsEi-A riesv RS3_HAEIN : 158- 162: sgrlg GaEi-A rsewy RS3_HALHA : 155- 158: yikhn G-Ep-A eeivd RS3_HALHA : 221- 224: eelle G-Ed-A daeda RS3_HALMA : 155- 158: yvkhn G-Ep-A eeivd RS3_MAIZE : 176- 180: agrla GkEi-A raeci RS3_MARPO : 169- 173: agrln GaEi-A rvewa RS3_MYCCA : 161- 165: sgrlg GvEm-A rtegy RS3_ORYSA : 191- 195: agrla GkEi-A raeci RS3_PINTH : 171- 175: agrld GkEi-A rvewd RS3_SPIOL : 56- 61: tktss GvEgiA rieiq RS3_SPIOL : 170- 174: agrid GkEi-A riewi RS3_THEMA : 159- 163: agrlg GaEi-A rrewy RS3_TOBAC : 56- 61: mrtss GvEgiA rieiq RS3_TOBAC : 170- 174: agrid GkEi-A rvewi RT03_MAIZE : 499- 503: sgrlg GaEi-A rtecg RT03_MARPO : 366- 370: sgrln GaEi-A kteck RT03_OENBE : 91- 95: kksrp GkEk-A rwwef RT03_OENBE : 503- 507: sgrsk GaEi-A rtecg RT03_ORYSA : 478- 482: sgrlg GaEi-A rtecg RT03_PETHY : 502- 506: sgrle GaEi-A rtecg R 18: 11.5102 35( 31) R-x(2,3)-G-x(3,4)-A Occurences: 35(31) RS3_ACHAX : 160- 167: ktlsq Rlg-Grem-A rtegy RS3_ACHFL : 159- 166: tsvsg Rlg-Gvem-A rtegy RS3_ACHLA : 160- 167: tlvsg Rlg-Gaem-A rsegy RS3_ACHSP : 160- 167: tlvsg Rlg-Gaem-A rsegy RS3_ACYKS : 129- 136: vdvsg Rlg-Gaei-A rtewy RS3_ANAAB : 161- 168: tlisg Rlg-Gaei-A rsegy RS3_BACST : 153- 161: ktmvv RrlgGaei-A rsehy RS3_BACST : 153- 161: ktmvv Rrl-GgaeiA rsehy RS3_BACST : 154- 161: tmvvr Rlg-Gaei-A rsehy RS3_BACSU : 154- 161: tmvsg Rlg-Gadi-A rpeyy RS3_CHLEU : 740- 747: iqvag Rln-Gaei-A rtewv RS3_CHLRE : 659- 666: iqvag Rln-Gaei-A rsewv RS3_CYAPA : 158- 165: iqisg Rln-Gaei-A rsews RS3_ECOLI : 155- 162: vevsg Rlg-Gaei-A rtewy RS3_EPIVI : 88- 96: flien Rql-GiikeA lhidl RS3_EPIVI : 169- 176: vqisg Rid-Gkei-A rvewi RS3_EUGGR : 169- 176: vqvsg Rln-Giei-A rtewf RS3_GRATE : 158- 165: iqvsg Rln-Gsei-A riesv RS3_HAEIN : 155- 162: vevsg Rlg-Gaei-A rsewy RS3_HALHA : 27- 36: aeela RagyGsmelA ptpmg RS3_HALMA : 27- 36: aeelg RagyGgmdvA ktpmg RS3_MAIZE : 173- 180: iqiag Rla-Gkei-A raeci RS3_MARPO : 166- 173: iqiag Rln-Gaei-A rvewa RS3_MYCCA : 158- 165: tavsg Rlg-Gvem-A rtegy RS3_ORYSA : 188- 195: vkiag Rla-Gkei-A raeci RS3_PINTH : 168- 175: iqiag Rld-Gkei-A rvewd RS3_SPIOL : 167- 174: iqiag Rid-Gkei-A riewi RS3_THEMA : 156- 163: vmvag Rlg-Gaei-A rrewy RS3_TOBAC : 52- 61: vqknm RtssGvegiA rieiq RS3_TOBAC : 167- 174: iqiag Rid-Gkei-A rvewi RT03_MAIZE : 496- 503: iccsg Rlg-Gaei-A rtecg RT03_MARPO : 363- 370: igcsg Rln-Gaei-A kteck RT03_OENBE : 119- 127: dteee RnevGgrg-A gkrve RT03_OENBE : 500- 507: iccsg Rsk-Gaei-A rtecg RT03_ORYSA : 475- 482: iccsg Rlg-Gaei-A rtecg RT03_PETHY : 499- 506: iccsg Rle-Gaei-A rtecg S 19: 11.5102 58( 31) G-x(0,1)-R-x(0,1)-G Occurences: 58(31) RS3_ACHAX : 9- 13: kvnpi GfRvG virdw RS3_ACHFL : 158- 161: ktsvs G-RlG gvema RS3_ACHLA : 9- 13: ktnpn GlRlG iirtw RS3_ACHLA : 159- 162: rtlvs G-RlG gaema RS3_ACHSP : 9- 13: ktnpn GlRlG iirsw RS3_ACHSP : 82- 85: pgivi G-RdG etrnk RS3_ACHSP : 159- 162: ktlvs G-RlG gaema RS3_ACYKS : 128- 131: kvdvs G-RlG gaeia RS3_ANAAB : 9- 13: kvspm GlRvG inrew RS3_ANAAB : 160- 163: ktlis G-RlG gaeia RS3_BACST : 8- 12: kvnpi GlRiG iirdw RS3_BACST : 143- 146: ramrp G-RkG vktmv RS3_BACSU : 8- 12: kvnpv GlRiG virdw RS3_BACSU : 153- 156: ktmvs G-RlG gadia RS3_CHLEU : 9- 13: kvhps GfRvG itkkh RS3_CHLRE : 9- 13: kvhpl GfRvG itkkh RS3_CYAPA : 9- 13: kihpi GfRlG itqkh RS3_CYAPA : 78- 80: pgvvv G-R-G grgie RS3_CYAPA : 78- 81: pgvvv G-RgG rgiev RS3_CYAPA : 80- 83: vvvgr GgR-G ievlr RS3_CYAPA : 81- 83: vvgrg G-R-G ievlr RS3_ECOLI : 8- 12: kvhpn GiRlG ivkpw RS3_ECOLI : 154- 157: kvevs G-RlG gaeia RS3_EPIVI : 9- 13: kinpl GfRlG ttqsh RS3_EUGGR : 9- 13: kvhpl GfRlG itksh RS3_EUGGR : 84- 87: pervi G-RdG qglsr RS3_GRATE : 9- 13: kthpl GfRiG itrdh RS3_GRATE : 81- 83: ilgkl G-R-G ledlr RS3_HAEIN : 8- 12: kvhph GiRlG ivkpw RS3_HAEIN : 154- 157: kvevs G-RlG gaeia RS3_HALHA : 138- 141: sgkvt GnR-G rvekf RS3_HALMA : 26- 29: faeel G-RaG yggmd RS3_MAIZE : 9- 13: kinpl GfRlG ttqnh RS3_MARPO : 9- 13: kinpl GfRlG itqnh RS3_MYCCA : 157- 160: ktavs G-RlG gvema RS3_ORYSA : 9- 13: kinpl GfRlG ttqnh RS3_PINTH : 9- 13: kinpl GfRlG vtqne RS3_PINTH : 88- 90: lllie G-R-G qgiek RS3_SPIOL : 9- 13: kinpl GfRlG ttqsh RS3_THEMA : 9- 13: kvhpr GfRlG lsadw RS3_THEMA : 78- 81: pgiii G-RkG seits RS3_THEMA : 155- 158: kvmva G-RlG gaeia RS3_TOBAC : 9- 13: kinpl GfRlG ttqgh RT03_MAIZE : 54- 58: trltf GfRlG rciil RT03_MAIZE : 124- 126: rnevr G-R-G agkrv RT03_MAIZE : 387- 390: kfidl G-RiG klikg RT03_MAIZE : 495- 498: riccs G-RlG gaeia RT03_MARPO : 54- 58: tgntf GfRlG rciih RT03_MARPO : 355- 359: cpyvk GiRiG csgrl RT03_OENBE : 54- 58: trltf GfRlG rciil RT03_OENBE : 123- 126: ernev GgR-G agkrv RT03_OENBE : 124- 126: rnevg G-R-G agkrv RT03_ORYSA : 54- 58: tiltf GfRlG rciil RT03_ORYSA : 124- 126: rnevr G-R-G agkrv RT03_ORYSA : 366- 369: kfiyl G-RiG klikg RT03_ORYSA : 474- 477: riccs G-RlG gaeia RT03_PETHY : 53- 57: trltf GfRlG rciil RT03_PETHY : 94- 97: pvkek G-RwG afgkv RT03_PETHY : 123- 125: rnevr G-R-G agkrv T 20: 11.5102 37( 31) G-x(2,3)-G-x(1,2)-E Occurences: 37(31) RS3_ACHAX : 79- 85: hsgkp GvviGr-E aatmk RS3_ACHFL : 158- 164: ktsvs GrlgGv-E marte RS3_ACHFL : 158- 164: ktsvs Grl-GgvE marte RS3_ACHLA : 78- 84: yvskp GialGk-E asvkn RS3_ACHLA : 159- 165: rtlvs GrlgGa-E marse RS3_ACHLA : 159- 165: rtlvs Grl-GgaE marse RS3_ACHSP : 159- 165: ktlvs GrlgGa-E marse RS3_ACHSP : 159- 165: ktlvs Grl-GgaE marse RS3_ACYKS : 128- 134: kvdvs GrlgGa-E iarte RS3_ACYKS : 128- 134: kvdvs Grl-GgaE iarte RS3_ANAAB : 79- 85: htakp GvviGh-E aetkn RS3_ANAAB : 160- 166: ktlis GrlgGa-E iarse RS3_ANAAB : 160- 166: ktlis Grl-GgaE iarse RS3_BACST : 76- 81: pgmvi Gkg-Gs-E vealr RS3_BACSU : 76- 81: pgmvi Gkg-Gs-E vealr RS3_CHLEU : 739- 745: kiqva GrlnGa-E iarte RS3_CHLRE : 658- 664: kiqva GrlnGa-E iarse RS3_CYAPA : 80- 85: vvvgr Ggr-Gi-E vlrkg RS3_CYAPA : 157- 163: kiqis GrlnGa-E iarse RS3_ECOLI : 154- 160: kvevs GrlgGa-E iarte RS3_ECOLI : 154- 160: kvevs Grl-GgaE iarte RS3_EPIVI : 168- 174: qvqis GridGk-E iarve RS3_EUGGR : 168- 174: kvqvs GrlnGi-E iarte RS3_GRATE : 157- 163: kiqvs GrlnGs-E iarie RS3_HAEIN : 154- 160: kvevs GrlgGa-E iarse RS3_HAEIN : 154- 160: kvevs Grl-GgaE iarse RS3_HALHA : 124- 129: rimes Gal-Ga-E ivlsg RS3_HALHA : 138- 144: sgkvt Gnr-GrvE kfnrg RS3_HALMA : 124- 129: rimes Gal-Ga-E ivlsg RS3_MAIZE : 172- 178: kiqia GrlaGk-E iarae RS3_MARPO : 165- 171: kiqia GrlnGa-E iarve RS3_MYCCA : 157- 163: ktavs GrlgGv-E marte RS3_MYCCA : 157- 163: ktavs Grl-GgvE marte RS3_ORYSA : 187- 193: kvkia GrlaGk-E iarae RS3_PINTH : 88- 94: lllie GrgqGi-E klrnd RS3_PINTH : 167- 173: qiqia GrldGk-E iarve RS3_SPIOL : 166- 172: qiqia GridGk-E iarie RS3_THEMA : 78- 83: pgiii Grk-Gs-E itslr RS3_THEMA : 155- 161: kvmva GrlgGa-E iarre RS3_THEMA : 155- 161: kvmva Grl-GgaE iarre RS3_TOBAC : 166- 172: qiqia GridGk-E iarve RT03_MAIZE : 495- 501: riccs GrlgGa-E iarte RT03_MAIZE : 495- 501: riccs Grl-GgaE iarte RT03_MARPO : 362- 368: rigcs GrlnGa-E iakte RT03_OENBE : 499- 505: riccs GrskGa-E iarte RT03_ORYSA : 474- 480: riccs GrlgGa-E iarte RT03_ORYSA : 474- 480: riccs Grl-GgaE iarte RT03_PETHY : 498- 504: riccs GrleGa-E iarte Number of patterns evaluated by Pratt:1415 Total running time: 4 seconds