------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 29 sequences from file RIBOSOMAL_S3_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 29 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S3_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS3_ACHAX 257 RS3_ACHFL 241 RS3_ACHLA 265 RS3_ACHSP 248 RS3_ANAAB 251 RS3_BACST 217 RS3_BACSU 217 RS3_CHLEU 800 RS3_CHLRE 712 RS3_CYAPA 219 RS3_ECOLI 232 RS3_EPIVI 220 RS3_EUGGR 218 RS3_GRATE 209 RS3_HAEIN 234 RS3_HALHA 302 RS3_HALMA 304 RS3_MAIZE 224 RS3_MARPO 217 RS3_MYCCA 232 RS3_ORYSA 239 RS3_PINTH 217 RS3_SPIOL 218 RS3_THEMA 209 RS3_TOBAC 218 RT03_MAIZE 559 RT03_MARPO 430 RT03_OENBE 550 RT03_PETHY 562 Pratt run started at Thu Feb 6 21:06:16 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 18.8503 30( 29) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G 2: 15.6802 29( 29) G-x(3)-A-x(0,2)-E-x(4)-G 3: 15.6802 29( 29) G-x(2,3)-A-x(1,2)-E-x(4)-G 4: 12.0102 47( 29) G-x(2)-G-x(0,1)-K 5: 12.0102 41( 29) G-x(1,2)-G-x-K 6: 12.0102 30( 29) T-x(2)-G-x(4,5)-K 7: 12.0102 32( 29) A-x(2,3)-E-x(4)-G 8: 12.0102 32( 29) A-x(1,2)-E-x(4)-G 9: 12.0102 34( 29) G-x(2,3)-G-x-E 10: 11.5102 35( 29) G-x(0,1)-E-x(1,2)-A 11: 11.5102 33( 29) R-x(2,3)-G-x(3,4)-A 12: 11.5102 51( 29) K-x(4,5)-G-x(0,1)-R 13: 11.5102 52( 29) K-x(3,4)-G-x(2,3)-G 14: 11.5102 53( 29) G-x(0,1)-R-x(0,1)-G 15: 11.5102 38( 29) G-x(1,3)-G-x-E 16: 11.5102 41( 29) G-x(3)-G-x(2,4)-R 17: 11.5102 39( 29) T-x(2,3)-G-x(4,5)-K 18: 11.0102 60( 29) G-x(2,3)-G-x(1,3)-K 19: 11.0102 51( 29) G-x(0,1)-L-x(0,2)-G 20: 11.0102 56( 29) L-x(0,1)-G-x(0,2)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 21.4475 30( 29) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] B 2: 18.2774 29( 29) G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] C 3: 17.9766 31( 29) R-x(2,3)-G-x(3,4)-A-x(2)-[EP]-x(4)-[GI] D 4: 15.6802 29( 29) G-x(2,3)-A-x(1,2)-E-x(4)-G E 5: 14.6802 30( 29) R-x(2,4)-G-x(3)-A-x(0,2)-E F 6: 14.6787 39( 29) G-x(1,2)-G-[GIV]-K G 7: 14.6314 29( 29) A-x(1,2)-E-x(4)-G-x(2)-[GPS] H 8: 14.6074 29( 29) A-x(2,3)-E-x(4)-G-x(2)-[PST] I 9: 14.1720 43( 29) K-x(4,5)-G-x(0,1)-R-[ILV] J 10: 13.4189 35( 29) T-x(2,3)-G-x(4,5)-K-[AGILV] K 11: 13.2525 45( 29) G-x(0,1)-L-x(0,2)-G-[AGIV] L 12: 12.0102 47( 29) G-x(2)-G-x(0,1)-K M 13: 12.0102 41( 29) G-x(1,2)-G-x-K N 14: 12.0102 30( 29) T-x(2)-G-x(4,5)-K O 15: 12.0102 34( 29) G-x(2,3)-G-x-E P 16: 11.5102 29( 29) G-x(3)-A-x(0,2)-E Q 17: 11.5102 35( 29) G-x(0,1)-E-x(1,2)-A R 18: 11.5102 52( 29) K-x(3,4)-G-x(2,3)-G S 19: 11.5102 53( 29) G-x(0,1)-R-x(0,1)-G T 20: 11.5102 38( 29) G-x(1,3)-G-x-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 21.4475 30( 29) R-x(2,4)-G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] Occurences: 30(29) RS3_ACHAX : 160- 178: ktlsq Rlg--GremArtEgyseGqvP lhtlr RS3_ACHFL : 159- 177: tsvsg Rlg--GvemArtEgyieGsvP lstlr RS3_ACHLA : 160- 178: tlvsg Rlg--GaemArsEgyseGrvP lhtlr RS3_ACHSP : 160- 178: tlvsg Rlg--GaemArsEgyseGrvP lhtlr RS3_ANAAB : 161- 179: tlisg Rlg--GaeiArsEgyneGqvP lqtlr RS3_BACST : 153- 172: ktmvv Rrlg-GaeiArsEhyseGtvP lhtlr RS3_BACST : 154- 172: tmvvr Rlg--GaeiArsEhyseGtvP lhtlr RS3_BACSU : 154- 172: tmvsg Rlg--GadiArpEyyseGtvP lhtlr RS3_CHLEU : 740- 758: iqvag Rln--GaeiArtEwvraGrvP lqtlr RS3_CHLRE : 659- 677: iqvag Rln--GaeiArsEwvraGrvP lqtlr RS3_CYAPA : 158- 176: iqisg Rln--GaeiArsEwsreGrvP lqtlr RS3_ECOLI : 155- 173: vevsg Rlg--GaeiArtEwyreGrvP lhtlr RS3_EPIVI : 169- 187: vqisg Rid--GkeiArvEwireGrvP lqtiq RS3_EUGGR : 169- 187: vqvsg Rln--GieiArtEwfreGrvP lhtlr RS3_GRATE : 158- 176: iqvsg Rln--GseiAriEsvreGrvP lqtlr RS3_HAEIN : 155- 173: vevsg Rlg--GaeiArsEwyreGrvP lhtlr RS3_HALHA : 119- 137: httid RimesGalgA--EivlsGkvT gnrgr RS3_HALMA : 119- 137: httid RimesGalgA--EivlsGkvT garsr RS3_MAIZE : 173- 191: iqiag Rla--GkeiAraEcikkGrlP lqtir RS3_MARPO : 166- 184: iqiag Rln--GaeiArvEwareGrvP lqtir RS3_MYCCA : 158- 176: tavsg Rlg--GvemArtEgyleGsvP lstlr RS3_ORYSA : 188- 206: vkiag Rla--GkeiAraEcikkGrlP lqtir RS3_PINTH : 168- 186: iqiag Rld--GkeiArvEwdrgGrvP lqtir RS3_SPIOL : 167- 185: iqiag Rid--GkeiAriEwireGrvP lqtir RS3_THEMA : 156- 174: vmvag Rlg--GaeiArrEwylrGrlP lqkik RS3_TOBAC : 167- 185: iqiag Rid--GkeiArvEwireGrvP lqtir RT03_MAIZE : 496- 514: iccsg Rlg--GaeiArtEcgkyGktS cnvfn RT03_MARPO : 363- 381: igcsg Rln--GaeiAktEckkyGetS lhvfs RT03_OENBE : 500- 518: iccsg Rsk--GaeiArtEcgkyGktS rnvfn RT03_PETHY : 499- 517: iccsg Rle--GaeiArtEcgkyGktS rnvfn B 2: 18.2774 29( 29) G-x(3)-A-x(0,2)-E-x(4)-G-x(2)-[PST] Occurences: 29(29) RS3_ACHAX : 163- 178: sqrlg GremArtEgyseGqvP lhtlr RS3_ACHFL : 162- 177: sgrlg GvemArtEgyieGsvP lstlr RS3_ACHLA : 163- 178: sgrlg GaemArsEgyseGrvP lhtlr RS3_ACHSP : 163- 178: sgrlg GaemArsEgyseGrvP lhtlr RS3_ANAAB : 164- 179: sgrlg GaeiArsEgyneGqvP lqtlr RS3_BACST : 157- 172: vrrlg GaeiArsEhyseGtvP lhtlr RS3_BACSU : 157- 172: sgrlg GadiArpEyyseGtvP lhtlr RS3_CHLEU : 743- 758: agrln GaeiArtEwvraGrvP lqtlr RS3_CHLRE : 662- 677: agrln GaeiArsEwvraGrvP lqtlr RS3_CYAPA : 161- 176: sgrln GaeiArsEwsreGrvP lqtlr RS3_ECOLI : 158- 173: sgrlg GaeiArtEwyreGrvP lhtlr RS3_EPIVI : 172- 187: sgrid GkeiArvEwireGrvP lqtiq RS3_EUGGR : 172- 187: sgrln GieiArtEwfreGrvP lhtlr RS3_GRATE : 161- 176: sgrln GseiAriEsvreGrvP lqtlr RS3_HAEIN : 158- 173: sgrlg GaeiArsEwyreGrvP lhtlr RS3_HALHA : 124- 137: rimes GalgA--EivlsGkvT gnrgr RS3_HALMA : 124- 137: rimes GalgA--EivlsGkvT garsr RS3_MAIZE : 176- 191: agrla GkeiAraEcikkGrlP lqtir RS3_MARPO : 169- 184: agrln GaeiArvEwareGrvP lqtir RS3_MYCCA : 161- 176: sgrlg GvemArtEgyleGsvP lstlr RS3_ORYSA : 191- 206: agrla GkeiAraEcikkGrlP lqtir RS3_PINTH : 171- 186: agrld GkeiArvEwdrgGrvP lqtir RS3_SPIOL : 170- 185: agrid GkeiAriEwireGrvP lqtir RS3_THEMA : 159- 174: agrlg GaeiArrEwylrGrlP lqkik RS3_TOBAC : 170- 185: agrid GkeiArvEwireGrvP lqtir RT03_MAIZE : 499- 514: sgrlg GaeiArtEcgkyGktS cnvfn RT03_MARPO : 366- 381: sgrln GaeiAktEckkyGetS lhvfs RT03_OENBE : 503- 518: sgrsk GaeiArtEcgkyGktS rnvfn RT03_PETHY : 502- 517: sgrle GaeiArtEcgkyGktS rnvfn C 3: 17.9766 31( 29) R-x(2,3)-G-x(3,4)-A-x(2)-[EP]-x(4)-[GI] Occurences: 31(29) RS3_ACHAX : 160- 175: ktlsq Rlg-Grem-ArtEgyseG qvplh RS3_ACHFL : 159- 174: tsvsg Rlg-Gvem-ArtEgyieG svpls RS3_ACHLA : 160- 175: tlvsg Rlg-Gaem-ArsEgyseG rvplh RS3_ACHSP : 160- 175: tlvsg Rlg-Gaem-ArsEgyseG rvplh RS3_ANAAB : 161- 176: tlisg Rlg-Gaei-ArsEgyneG qvplq RS3_BACST : 153- 169: ktmvv RrlgGaei-ArsEhyseG tvplh RS3_BACST : 153- 169: ktmvv Rrl-GgaeiArsEhyseG tvplh RS3_BACST : 154- 169: tmvvr Rlg-Gaei-ArsEhyseG tvplh RS3_BACSU : 154- 169: tmvsg Rlg-Gadi-ArpEyyseG tvplh RS3_CHLEU : 740- 755: iqvag Rln-Gaei-ArtEwvraG rvplq RS3_CHLRE : 659- 674: iqvag Rln-Gaei-ArsEwvraG rvplq RS3_CYAPA : 158- 173: iqisg Rln-Gaei-ArsEwsreG rvplq RS3_ECOLI : 155- 170: vevsg Rlg-Gaei-ArtEwyreG rvplh RS3_EPIVI : 169- 184: vqisg Rid-Gkei-ArvEwireG rvplq RS3_EUGGR : 169- 184: vqvsg Rln-Giei-ArtEwfreG rvplh RS3_GRATE : 158- 173: iqvsg Rln-Gsei-AriEsvreG rvplq RS3_HAEIN : 155- 170: vevsg Rlg-Gaei-ArsEwyreG rvplh RS3_HALHA : 27- 44: aeela RagyGsmelAptPmgmqI vlkae RS3_HALMA : 27- 44: aeelg RagyGgmdvAktPmgtqI vlkae RS3_MAIZE : 173- 188: iqiag Rla-Gkei-AraEcikkG rlplq RS3_MARPO : 166- 181: iqiag Rln-Gaei-ArvEwareG rvplq RS3_MYCCA : 158- 173: tavsg Rlg-Gvem-ArtEgyleG svpls RS3_ORYSA : 188- 203: vkiag Rla-Gkei-AraEcikkG rlplq RS3_PINTH : 168- 183: iqiag Rld-Gkei-ArvEwdrgG rvplq RS3_SPIOL : 167- 182: iqiag Rid-Gkei-AriEwireG rvplq RS3_THEMA : 156- 171: vmvag Rlg-Gaei-ArrEwylrG rlplq RS3_TOBAC : 52- 69: vqknm RtssGvegiAriEiqkrI dliqv RS3_TOBAC : 167- 182: iqiag Rid-Gkei-ArvEwireG rvplq RT03_MAIZE : 496- 511: iccsg Rlg-Gaei-ArtEcgkyG ktscn RT03_MARPO : 363- 378: igcsg Rln-Gaei-AktEckkyG etslh RT03_OENBE : 500- 515: iccsg Rsk-Gaei-ArtEcgkyG ktsrn RT03_PETHY : 499- 514: iccsg Rle-Gaei-ArtEcgkyG ktsrn D 4: 15.6802 29( 29) G-x(2,3)-A-x(1,2)-E-x(4)-G Occurences: 29(29) RS3_ACHAX : 163- 175: sqrlg GremArtEgyseG qvplh RS3_ACHFL : 162- 174: sgrlg GvemArtEgyieG svpls RS3_ACHLA : 163- 175: sgrlg GaemArsEgyseG rvplh RS3_ACHSP : 163- 175: sgrlg GaemArsEgyseG rvplh RS3_ANAAB : 164- 176: sgrlg GaeiArsEgyneG qvplq RS3_BACST : 157- 169: vrrlg GaeiArsEhyseG tvplh RS3_BACSU : 157- 169: sgrlg GadiArpEyyseG tvplh RS3_CHLEU : 743- 755: agrln GaeiArtEwvraG rvplq RS3_CHLRE : 662- 674: agrln GaeiArsEwvraG rvplq RS3_CYAPA : 161- 173: sgrln GaeiArsEwsreG rvplq RS3_ECOLI : 158- 170: sgrlg GaeiArtEwyreG rvplh RS3_EPIVI : 172- 184: sgrid GkeiArvEwireG rvplq RS3_EUGGR : 172- 184: sgrln GieiArtEwfreG rvplh RS3_GRATE : 161- 173: sgrln GseiAriEsvreG rvplq RS3_HAEIN : 158- 170: sgrlg GaeiArsEwyreG rvplh RS3_HALHA : 155- 165: yikhn Gep-Ae-EivdhG kgvav RS3_HALMA : 155- 165: yvkhn Gep-Ae-EivdsG vgvav RS3_MAIZE : 176- 188: agrla GkeiAraEcikkG rlplq RS3_MARPO : 169- 181: agrln GaeiArvEwareG rvplq RS3_MYCCA : 161- 173: sgrlg GvemArtEgyleG svpls RS3_ORYSA : 191- 203: agrla GkeiAraEcikkG rlplq RS3_PINTH : 171- 183: agrld GkeiArvEwdrgG rvplq RS3_SPIOL : 170- 182: agrid GkeiAriEwireG rvplq RS3_THEMA : 159- 171: agrlg GaeiArrEwylrG rlplq RS3_TOBAC : 170- 182: agrid GkeiArvEwireG rvplq RT03_MAIZE : 499- 511: sgrlg GaeiArtEcgkyG ktscn RT03_MARPO : 366- 378: sgrln GaeiAktEckkyG etslh RT03_OENBE : 503- 515: sgrsk GaeiArtEcgkyG ktsrn RT03_PETHY : 502- 514: sgrle GaeiArtEcgkyG ktsrn E 5: 14.6802 30( 29) R-x(2,4)-G-x(3)-A-x(0,2)-E Occurences: 30(29) RS3_ACHAX : 160- 170: ktlsq Rlg--GremArtE gyseg RS3_ACHFL : 159- 169: tsvsg Rlg--GvemArtE gyieg RS3_ACHLA : 160- 170: tlvsg Rlg--GaemArsE gyseg RS3_ACHSP : 160- 170: tlvsg Rlg--GaemArsE gyseg RS3_ANAAB : 161- 171: tlisg Rlg--GaeiArsE gyneg RS3_BACST : 153- 164: ktmvv Rrlg-GaeiArsE hyseg RS3_BACST : 154- 164: tmvvr Rlg--GaeiArsE hyseg RS3_BACSU : 154- 164: tmvsg Rlg--GadiArpE yyseg RS3_CHLEU : 740- 750: iqvag Rln--GaeiArtE wvrag RS3_CHLRE : 659- 669: iqvag Rln--GaeiArsE wvrag RS3_CYAPA : 158- 168: iqisg Rln--GaeiArsE wsreg RS3_ECOLI : 155- 165: vevsg Rlg--GaeiArtE wyreg RS3_EPIVI : 169- 179: vqisg Rid--GkeiArvE wireg RS3_EUGGR : 169- 179: vqvsg Rln--GieiArtE wfreg RS3_GRATE : 158- 168: iqvsg Rln--GseiAriE svreg RS3_HAEIN : 155- 165: vevsg Rlg--GaeiArsE wyreg RS3_HALHA : 119- 129: httid RimesGalgA--E ivlsg RS3_HALMA : 119- 129: httid RimesGalgA--E ivlsg RS3_MAIZE : 173- 183: iqiag Rla--GkeiAraE cikkg RS3_MARPO : 166- 176: iqiag Rln--GaeiArvE wareg RS3_MYCCA : 158- 168: tavsg Rlg--GvemArtE gyleg RS3_ORYSA : 188- 198: vkiag Rla--GkeiAraE cikkg RS3_PINTH : 168- 178: iqiag Rld--GkeiArvE wdrgg RS3_SPIOL : 167- 177: iqiag Rid--GkeiAriE wireg RS3_THEMA : 156- 166: vmvag Rlg--GaeiArrE wylrg RS3_TOBAC : 167- 177: iqiag Rid--GkeiArvE wireg RT03_MAIZE : 496- 506: iccsg Rlg--GaeiArtE cgkyg RT03_MARPO : 363- 373: igcsg Rln--GaeiAktE ckkyg RT03_OENBE : 500- 510: iccsg Rsk--GaeiArtE cgkyg RT03_PETHY : 499- 509: iccsg Rle--GaeiArtE cgkyg F 6: 14.6787 39( 29) G-x(1,2)-G-[GIV]-K Occurences: 39(29) RS3_ACHAX : 198- 203: aqtty GilGIK vwiyh RS3_ACHFL : 148- 153: kalka GvkGIK tsvsg RS3_ACHFL : 197- 202: aptty GqiGVK vwinh RS3_ACHLA : 198- 203: astty GilGIK vwiyh RS3_ACHSP : 149- 154: ralks GakGVK tlvsg RS3_ACHSP : 198- 203: ahtty GvlGIK vwvfh RS3_ANAAB : 199- 204: ahtty GklGIK vwiyk RS3_BACST : 143- 148: ramrp GrkGVK tmvvr RS3_BACST : 192- 197: adtty GkiGVK vwiyr RS3_BACSU : 143- 148: rtmra GaqGVK tmvsg RS3_BACSU : 192- 197: adtty GklGVK vwiyr RS3_CHLEU : 778- 783: antiy GiiGVK vwifk RS3_CHLRE : 697- 702: antiy GiiGVK vwifk RS3_CYAPA : 147- 152: raqrr GieGIK iqisg RS3_CYAPA : 196- 201: aqtiy GvlGVK vwifk RS3_ECOLI : 144- 149: namrl GakGIK vevsg RS3_ECOLI : 193- 198: ahtty GviGVK vwifk RS3_EPIVI : 207- 212: vrtth GvlGIK iwifi RS3_EUGGR : 158- 163: qamka GaeGIK vqvsg RS3_EUGGR : 207- 212: ahtiy GvlGIK vwvyk RS3_GRATE : 196- 201: thtiy GilGVK ygylk RS3_HAEIN : 144- 149: samrl GakGIK vevsg RS3_HAEIN : 193- 198: ahtty GviGVK vwifk RS3_HALHA : 56- 60: pgmvi Gk-GGK nirki RS3_HALMA : 56- 60: pgmvi Gk-GGK nirki RS3_MAIZE : 211- 216: irtiy GvlGVK iwifv RS3_MARPO : 204- 209: aqtiy GvlGIK vwifq RS3_MYCCA : 147- 152: kalka GakGIK tavsg RS3_MYCCA : 196- 201: aptty GqiGVK vwinh RS3_ORYSA : 226- 231: irtiy GvlGVK iwifv RS3_PINTH : 206- 211: vktiy GvlGIK iwile RS3_SPIOL : 205- 210: vrtiy GvlGIK iwifm RS3_THEMA : 145- 150: namrk GaqGIK vmvag RS3_THEMA : 194- 199: awtky GtiGIK vwiyk RS3_TOBAC : 205- 210: vrtiy GvlGIK iwifl RT03_MAIZE : 534- 539: vstrd GisGVK vrisy RT03_MARPO : 401- 406: astpy GilGVK vwvsy RT03_OENBE : 538- 543: vstry GilGVK vwisy RT03_PETHY : 537- 542: vstry GisGVK vwisy G 7: 14.6314 29( 29) A-x(1,2)-E-x(4)-G-x(2)-[GPS] Occurences: 29(29) RS3_ACHAX : 167- 178: ggrem ArtEgyseGqvP lhtlr RS3_ACHFL : 166- 177: ggvem ArtEgyieGsvP lstlr RS3_ACHLA : 167- 178: ggaem ArsEgyseGrvP lhtlr RS3_ACHSP : 167- 178: ggaem ArsEgyseGrvP lhtlr RS3_ANAAB : 168- 179: ggaei ArsEgyneGqvP lqtlr RS3_BACST : 161- 172: ggaei ArsEhyseGtvP lhtlr RS3_BACSU : 161- 172: ggadi ArpEyyseGtvP lhtlr RS3_CHLEU : 747- 758: ngaei ArtEwvraGrvP lqtlr RS3_CHLRE : 666- 677: ngaei ArsEwvraGrvP lqtlr RS3_CYAPA : 165- 176: ngaei ArsEwsreGrvP lqtlr RS3_ECOLI : 162- 173: ggaei ArtEwyreGrvP lhtlr RS3_EPIVI : 176- 187: dgkei ArvEwireGrvP lqtiq RS3_EUGGR : 176- 187: ngiei ArtEwfreGrvP lhtlr RS3_GRATE : 165- 176: ngsei AriEsvreGrvP lqtlr RS3_HAEIN : 162- 173: ggaei ArsEwyreGrvP lhtlr RS3_HALHA : 22- 32: ideff Ae-ElaraGygS melap RS3_HALMA : 22- 32: ideff Ae-ElgraGygG mdvak RS3_MAIZE : 180- 191: agkei AraEcikkGrlP lqtir RS3_MARPO : 173- 184: ngaei ArvEwareGrvP lqtir RS3_MYCCA : 165- 176: ggvem ArtEgyleGsvP lstlr RS3_ORYSA : 195- 206: agkei AraEcikkGrlP lqtir RS3_PINTH : 175- 186: dgkei ArvEwdrgGrvP lqtir RS3_SPIOL : 174- 185: dgkei AriEwireGrvP lqtir RS3_THEMA : 163- 174: ggaei ArrEwylrGrlP lqkik RS3_TOBAC : 174- 185: dgkei ArvEwireGrvP lqtir RT03_MAIZE : 503- 514: ggaei ArtEcgkyGktS cnvfn RT03_MARPO : 370- 381: ngaei AktEckkyGetS lhvfs RT03_OENBE : 507- 518: kgaei ArtEcgkyGktS rnvfn RT03_PETHY : 506- 517: egaei ArtEcgkyGktS rnvfn H 8: 14.6074 29( 29) A-x(2,3)-E-x(4)-G-x(2)-[PST] Occurences: 29(29) RS3_ACHAX : 167- 178: ggrem Art-EgyseGqvP lhtlr RS3_ACHFL : 166- 177: ggvem Art-EgyieGsvP lstlr RS3_ACHLA : 167- 178: ggaem Ars-EgyseGrvP lhtlr RS3_ACHSP : 167- 178: ggaem Ars-EgyseGrvP lhtlr RS3_ANAAB : 168- 179: ggaei Ars-EgyneGqvP lqtlr RS3_BACST : 161- 172: ggaei Ars-EhyseGtvP lhtlr RS3_BACSU : 161- 172: ggadi Arp-EyyseGtvP lhtlr RS3_CHLEU : 747- 758: ngaei Art-EwvraGrvP lqtlr RS3_CHLRE : 666- 677: ngaei Ars-EwvraGrvP lqtlr RS3_CYAPA : 165- 176: ngaei Ars-EwsreGrvP lqtlr RS3_ECOLI : 162- 173: ggaei Art-EwyreGrvP lhtlr RS3_EPIVI : 176- 187: dgkei Arv-EwireGrvP lqtiq RS3_EUGGR : 176- 187: ngiei Art-EwfreGrvP lhtlr RS3_GRATE : 165- 176: ngsei Ari-EsvreGrvP lqtlr RS3_HAEIN : 162- 173: ggaei Ars-EwyreGrvP lhtlr RS3_HALHA : 125- 137: imesg AlgaEivlsGkvT gnrgr RS3_HALMA : 125- 137: imesg AlgaEivlsGkvT garsr RS3_MAIZE : 180- 191: agkei Ara-EcikkGrlP lqtir RS3_MARPO : 173- 184: ngaei Arv-EwareGrvP lqtir RS3_MYCCA : 165- 176: ggvem Art-EgyleGsvP lstlr RS3_ORYSA : 195- 206: agkei Ara-EcikkGrlP lqtir RS3_PINTH : 175- 186: dgkei Arv-EwdrgGrvP lqtir RS3_SPIOL : 174- 185: dgkei Ari-EwireGrvP lqtir RS3_THEMA : 163- 174: ggaei Arr-EwylrGrlP lqkik RS3_TOBAC : 174- 185: dgkei Arv-EwireGrvP lqtir RT03_MAIZE : 503- 514: ggaei Art-EcgkyGktS cnvfn RT03_MARPO : 370- 381: ngaei Akt-EckkyGetS lhvfs RT03_OENBE : 507- 518: kgaei Art-EcgkyGktS rnvfn RT03_PETHY : 506- 517: egaei Art-EcgkyGktS rnvfn I 9: 14.1720 43( 29) K-x(4,5)-G-x(0,1)-R-[ILV] Occurences: 43(29) RS3_ACHAX : 4- 12: mgq Kvnpi-GfRV gvird RS3_ACHFL : 153- 160: gvkgi Ktsvs-G-RL ggvem RS3_ACHLA : 4- 12: mgq Ktnpn-GlRL giirt RS3_ACHSP : 4- 12: mgq Ktnpn-GlRL giirs RS3_ACHSP : 154- 161: gakgv Ktlvs-G-RL ggaem RS3_ANAAB : 4- 12: mgq Kvspm-GlRV ginre RS3_ANAAB : 155- 162: gakga Ktlis-G-RL ggaei RS3_BACST : 3- 11: gq Kvnpi-GlRI giird RS3_BACSU : 3- 11: gq Kvnpv-GlRI gvird RS3_BACSU : 148- 155: gaqgv Ktmvs-G-RL ggadi RS3_CHLEU : 4- 12: mgq Kvhps-GfRV gitkk RS3_CHLEU : 734- 741: eikgv Kiqva-G-RL ngaei RS3_CHLRE : 4- 12: mgq Kvhpl-GfRV gitkk RS3_CHLRE : 653- 660: rvkgv Kiqva-G-RL ngaei RS3_CYAPA : 4- 12: mgq Kihpi-GfRL gitqk RS3_CYAPA : 152- 159: giegi Kiqis-G-RL ngaei RS3_ECOLI : 3- 11: gq Kvhpn-GiRL givkp RS3_ECOLI : 149- 156: gakgi Kvevs-G-RL ggaei RS3_EPIVI : 4- 12: mgq Kinpl-GfRL gttqs RS3_EUGGR : 4- 12: mgq Kvhpl-GfRL gitks RS3_EUGGR : 163- 170: gaegi Kvqvs-G-RL ngiei RS3_GRATE : 4- 12: mgq Kthpl-GfRI gitrd RS3_GRATE : 152- 159: knqgi Kiqvs-G-RL ngsei RS3_HAEIN : 3- 11: gq Kvhph-GiRL givkp RS3_HAEIN : 149- 156: gakgi Kvevs-G-RL ggaei RS3_HALHA : 135- 143: ivlsg KvtgnrG-RV ekfnr RS3_HALMA : 172- 180: gvavm Klgti-GvRV kiipp RS3_MAIZE : 4- 12: mgq Kinpl-GfRL gttqn RS3_MAIZE : 167- 174: dikgi Kiqia-G-RL agkei RS3_MARPO : 4- 12: mgq Kinpl-GfRL gitqn RS3_MARPO : 160- 167: nikgi Kiqia-G-RL ngaei RS3_MYCCA : 152- 159: gakgi Ktavs-G-RL ggvem RS3_ORYSA : 4- 12: mgq Kinpl-GfRL gttqn RS3_ORYSA : 182- 189: dikgv Kvkia-G-RL agkei RS3_PINTH : 4- 12: maq Kinpl-GfRL gvtqn RS3_SPIOL : 4- 12: mgq Kinpl-GfRL gttqs RS3_THEMA : 4- 12: mgq Kvhpr-GfRL glsad RS3_THEMA : 150- 157: gaqgi Kvmva-G-RL ggaei RS3_TOBAC : 4- 12: mgq Kinpl-GfRL gttqg RT03_MAIZE : 382- 389: melie Kfidl-G-RI gklik RT03_MARPO : 349- 358: fkqik KcpyvkGiRI gcsgr RT03_OENBE : 487- 495: iplvm Kkgve-GiRI ccsgr RT03_PETHY : 486- 494: iplvm Kkgve-GiRI ccsgr J 10: 13.4189 35( 29) T-x(2,3)-G-x(4,5)-K-[AGILV] Occurences: 35(29) RS3_ACHAX : 195- 204: taeaq Tty-Gilgi-KV wiyhg RS3_ACHFL : 194- 203: lyeap Tty-Gqigv-KV winhg RS3_ACHLA : 195- 204: taeas Tty-Gilgi-KV wiyhg RS3_ACHSP : 195- 204: taeah Tty-Gvlgi-KV wvfhg RS3_ANAAB : 196- 205: vaeah Tty-Gklgi-KV wiykg RS3_BACST : 68- 78: nvtih TakpGmvig-KG gseve RS3_BACST : 189- 198: taead Tty-Gkigv-KV wiyrg RS3_BACSU : 68- 78: nitih TakpGmvig-KG gseve RS3_BACSU : 189- 198: tsead Tty-Gklgv-KV wiyrg RS3_CHLEU : 403- 413: lfley Tsk-GfdsnnKA vlslg RS3_CHLEU : 775- 784: yrtan Tiy-Giigv-KV wifkg RS3_CHLRE : 694- 703: yrtan Tiy-Giigv-KV wifkg RS3_CYAPA : 193- 202: ykraq Tiy-Gvlgv-KV wifkg RS3_ECOLI : 69- 80: rvtih TarpGivigkKG edvek RS3_ECOLI : 190- 199: tseah Tty-Gvigv-KV wifkg RS3_EPIVI : 204- 213: symvr Tth-Gvlgi-KI wifie RS3_EUGGR : 204- 213: ndiah Tiy-Gvlgi-KV wvykv RS3_GRATE : 70- 80: qvhih TarpGiilg-KL grgle RS3_HAEIN : 69- 80: rvtih TarpGivigkKG edvek RS3_HAEIN : 190- 199: taeah Tty-Gvigv-KV wifkg RS3_HALHA : 38- 48: melap Tpm-GmqivlKA ekpgm RS3_HALMA : 38- 48: mdvak Tpm-GtqivlKA ekpgm RS3_MAIZE : 208- 217: cypir Tiy-Gvlgv-KI wifve RS3_MARPO : 201- 210: yyaaq Tiy-Gvlgi-KV wifqd RS3_MYCCA : 193- 202: lyeap Tty-Gqigv-KV winhg RS3_ORYSA : 223- 232: cypir Tiy-Gvlgv-KI wifvd RS3_PINTH : 203- 212: yypvk Tiy-Gvlgi-KI wilee RS3_SPIOL : 202- 211: aytvr Tiy-Gvlgi-KI wifmg RS3_THEMA : 70- 81: nitvk TarpGiiigrKG seits RS3_THEMA : 191- 200: tataw Tky-Gtigi-KV wiykg RS3_TOBAC : 202- 211: sytvr Tiy-Gvlgi-KI wifld RT03_MAIZE : 531- 540: paevs Trd-Gisgv-KV risys RT03_MARPO : 398- 407: ktqas Tpy-Gilgv-KV wvsyf RT03_OENBE : 535- 544: paevs Try-Gilgv-KV wisys RT03_PETHY : 534- 543: paevs Try-Gisgv-KV wisys K 11: 13.2525 45( 29) G-x(0,1)-L-x(0,2)-G-[AGIV] Occurences: 45(29) RS3_ACHAX : 198- 202: aqtty GiL--GI kvwiy RS3_ACHFL : 158- 162: ktsvs GrL--GG vemar RS3_ACHFL : 158- 163: ktsvs GrLg-GV emart RS3_ACHLA : 9- 14: ktnpn G-LrlGI irtwe RS3_ACHLA : 159- 163: rtlvs GrL--GG aemar RS3_ACHLA : 159- 164: rtlvs GrLg-GA emars RS3_ACHLA : 198- 202: astty GiL--GI kvwiy RS3_ACHSP : 9- 14: ktnpn G-LrlGI irswe RS3_ACHSP : 159- 163: ktlvs GrL--GG aemar RS3_ACHSP : 159- 164: ktlvs GrLg-GA emars RS3_ACHSP : 198- 202: ahtty GvL--GI kvwvf RS3_ANAAB : 9- 14: kvspm G-LrvGI nrewd RS3_ANAAB : 160- 164: ktlis GrL--GG aeiar RS3_ANAAB : 160- 165: ktlis GrLg-GA eiars RS3_ANAAB : 199- 203: ahtty GkL--GI kvwiy RS3_BACST : 8- 13: kvnpi G-LriGI irdwe RS3_BACSU : 8- 13: kvnpv G-LriGV irdwe RS3_BACSU : 153- 157: ktmvs GrL--GG adiar RS3_BACSU : 153- 158: ktmvs GrLg-GA diarp RS3_BACSU : 192- 196: adtty GkL--GV kvwiy RS3_CHLEU : 739- 744: kiqva GrLn-GA eiart RS3_CHLRE : 658- 663: kiqva GrLn-GA eiars RS3_CYAPA : 157- 162: kiqis GrLn-GA eiars RS3_CYAPA : 196- 200: aqtiy GvL--GV kvwif RS3_ECOLI : 154- 158: kvevs GrL--GG aeiar RS3_ECOLI : 154- 159: kvevs GrLg-GA eiart RS3_EPIVI : 207- 211: vrtth GvL--GI kiwif RS3_EUGGR : 168- 173: kvqvs GrLn-GI eiart RS3_EUGGR : 207- 211: ahtiy GvL--GI kvwvy RS3_GRATE : 196- 200: thtiy GiL--GV kygyl RS3_HAEIN : 154- 158: kvevs GrL--GG aeiar RS3_HAEIN : 154- 159: kvevs GrLg-GA eiars RS3_HALHA : 124- 128: rimes GaL--GA eivls RS3_HALMA : 124- 128: rimes GaL--GA eivls RS3_MAIZE : 211- 215: irtiy GvL--GV kiwif RS3_MARPO : 165- 170: kiqia GrLn-GA eiarv RS3_MARPO : 204- 208: aqtiy GvL--GI kvwif RS3_MYCCA : 157- 161: ktavs GrL--GG vemar RS3_MYCCA : 157- 162: ktavs GrLg-GV emart RS3_ORYSA : 226- 230: irtiy GvL--GV kiwif RS3_PINTH : 206- 210: vktiy GvL--GI kiwil RS3_SPIOL : 205- 209: vrtiy GvL--GI kiwif RS3_THEMA : 155- 159: kvmva GrL--GG aeiar RS3_THEMA : 155- 160: kvmva GrLg-GA eiarr RS3_TOBAC : 205- 209: vrtiy GvL--GI kiwif RT03_MAIZE : 390- 396: dlgri GkLikGI emmie RT03_MAIZE : 495- 499: riccs GrL--GG aeiar RT03_MAIZE : 495- 500: riccs GrLg-GA eiart RT03_MARPO : 86- 89: qsrhq G-L--GA ipsvk RT03_MARPO : 362- 367: rigcs GrLn-GA eiakt RT03_MARPO : 401- 405: astpy GiL--GV kvwvs RT03_OENBE : 394- 400: dlggi GeLikGI eimie RT03_OENBE : 538- 542: vstry GiL--GV kvwis RT03_PETHY : 393- 399: dlnri GeLirGI emmie RT03_PETHY : 498- 503: riccs GrLe-GA eiart L 12: 12.0102 47( 29) G-x(2)-G-x(0,1)-K Occurences: 47(29) RS3_ACHAX : 198- 203: aqtty GilGiK vwiyh RS3_ACHFL : 78- 82: paivl GqeG-K nvsni RS3_ACHFL : 148- 153: kalka GvkGiK tsvsg RS3_ACHFL : 197- 202: aptty GqiGvK vwinh RS3_ACHLA : 198- 203: astty GilGiK vwiyh RS3_ACHSP : 149- 154: ralks GakGvK tlvsg RS3_ACHSP : 198- 203: ahtty GvlGiK vwvfh RS3_ANAAB : 150- 155: ralka GakGaK tlisg RS3_ANAAB : 199- 204: ahtty GklGiK vwiyk RS3_BACST : 143- 148: ramrp GrkGvK tmvvr RS3_BACST : 192- 197: adtty GkiGvK vwiyr RS3_BACSU : 143- 148: rtmra GaqGvK tmvsg RS3_BACSU : 192- 197: adtty GklGvK vwiyr RS3_CHLEU : 778- 783: antiy GiiGvK vwifk RS3_CHLRE : 697- 702: antiy GiiGvK vwifk RS3_CYAPA : 147- 152: raqrr GieGiK iqisg RS3_CYAPA : 196- 201: aqtiy GvlGvK vwifk RS3_ECOLI : 144- 149: namrl GakGiK vevsg RS3_ECOLI : 193- 198: ahtty GviGvK vwifk RS3_EPIVI : 207- 212: vrtth GvlGiK iwifi RS3_EUGGR : 158- 163: qamka GaeGiK vqvsg RS3_EUGGR : 207- 212: ahtiy GvlGiK vwvyk RS3_GRATE : 196- 201: thtiy GilGvK ygylk RS3_HAEIN : 144- 149: samrl GakGiK vevsg RS3_HAEIN : 193- 198: ahtty GviGvK vwifk RS3_HALHA : 56- 60: pgmvi GkgG-K nirki RS3_HALMA : 56- 60: pgmvi GkgG-K nirki RS3_MAIZE : 211- 216: irtiy GvlGvK iwifv RS3_MARPO : 204- 209: aqtiy GvlGiK vwifq RS3_MYCCA : 77- 81: paivl GqeG-K nieki RS3_MYCCA : 147- 152: kalka GakGiK tavsg RS3_MYCCA : 196- 201: aptty GqiGvK vwinh RS3_ORYSA : 226- 231: irtiy GvlGvK iwifv RS3_PINTH : 206- 211: vktiy GvlGiK iwile RS3_SPIOL : 205- 210: vrtiy GvlGiK iwifm RS3_THEMA : 145- 150: namrk GaqGiK vmvag RS3_THEMA : 194- 199: awtky GtiGiK vwiyk RS3_TOBAC : 205- 210: vrtiy GvlGiK iwifl RT03_MAIZE : 387- 391: kfidl GriG-K likgi RT03_MAIZE : 508- 512: artec GkyG-K tscnv RT03_MAIZE : 534- 539: vstrd GisGvK vrisy RT03_MARPO : 401- 406: astpy GilGvK vwvsy RT03_OENBE : 512- 516: artec GkyG-K tsrnv RT03_OENBE : 538- 543: vstry GilGvK vwisy RT03_PETHY : 97- 101: ekgrw GafG-K vgpig RT03_PETHY : 511- 515: artec GkyG-K tsrnv RT03_PETHY : 537- 542: vstry GisGvK vwisy M 13: 12.0102 41( 29) G-x(1,2)-G-x-K Occurences: 41(29) RS3_ACHAX : 198- 203: aqtty GilGiK vwiyh RS3_ACHFL : 148- 153: kalka GvkGiK tsvsg RS3_ACHFL : 197- 202: aptty GqiGvK vwinh RS3_ACHLA : 198- 203: astty GilGiK vwiyh RS3_ACHSP : 149- 154: ralks GakGvK tlvsg RS3_ACHSP : 198- 203: ahtty GvlGiK vwvfh RS3_ANAAB : 150- 155: ralka GakGaK tlisg RS3_ANAAB : 199- 204: ahtty GklGiK vwiyk RS3_BACST : 143- 148: ramrp GrkGvK tmvvr RS3_BACST : 192- 197: adtty GkiGvK vwiyr RS3_BACSU : 143- 148: rtmra GaqGvK tmvsg RS3_BACSU : 192- 197: adtty GklGvK vwiyr RS3_CHLEU : 778- 783: antiy GiiGvK vwifk RS3_CHLRE : 697- 702: antiy GiiGvK vwifk RS3_CYAPA : 147- 152: raqrr GieGiK iqisg RS3_CYAPA : 196- 201: aqtiy GvlGvK vwifk RS3_ECOLI : 144- 149: namrl GakGiK vevsg RS3_ECOLI : 193- 198: ahtty GviGvK vwifk RS3_EPIVI : 207- 212: vrtth GvlGiK iwifi RS3_EUGGR : 158- 163: qamka GaeGiK vqvsg RS3_EUGGR : 207- 212: ahtiy GvlGiK vwvyk RS3_GRATE : 196- 201: thtiy GilGvK ygylk RS3_HAEIN : 144- 149: samrl GakGiK vevsg RS3_HAEIN : 193- 198: ahtty GviGvK vwifk RS3_HAEIN : 230- 234: kkapr Gk-GrK RS3_HALHA : 56- 60: pgmvi Gk-GgK nirki RS3_HALMA : 56- 60: pgmvi Gk-GgK nirki RS3_MAIZE : 211- 216: irtiy GvlGvK iwifv RS3_MARPO : 204- 209: aqtiy GvlGiK vwifq RS3_MYCCA : 147- 152: kalka GakGiK tavsg RS3_MYCCA : 196- 201: aptty GqiGvK vwinh RS3_ORYSA : 226- 231: irtiy GvlGvK iwifv RS3_PINTH : 206- 211: vktiy GvlGiK iwile RS3_SPIOL : 205- 210: vrtiy GvlGiK iwifm RS3_THEMA : 145- 150: namrk GaqGiK vmvag RS3_THEMA : 194- 199: awtky GtiGiK vwiyk RS3_TOBAC : 205- 210: vrtiy GvlGiK iwifl RT03_MAIZE : 534- 539: vstrd GisGvK vrisy RT03_MARPO : 401- 406: astpy GilGvK vwvsy RT03_OENBE : 538- 543: vstry GilGvK vwisy RT03_PETHY : 537- 542: vstry GisGvK vwisy N 14: 12.0102 30( 29) T-x(2)-G-x(4,5)-K Occurences: 30(29) RS3_ACHAX : 195- 203: taeaq TtyGilgi-K vwiyh RS3_ACHFL : 194- 202: lyeap TtyGqigv-K vwinh RS3_ACHLA : 195- 203: taeas TtyGilgi-K vwiyh RS3_ACHSP : 195- 203: taeah TtyGvlgi-K vwvfh RS3_ANAAB : 196- 204: vaeah TtyGklgi-K vwiyk RS3_BACST : 189- 197: taead TtyGkigv-K vwiyr RS3_BACSU : 189- 197: tsead TtyGklgv-K vwiyr RS3_CHLEU : 403- 412: lfley TskGfdsnnK avlsl RS3_CHLEU : 775- 783: yrtan TiyGiigv-K vwifk RS3_CHLRE : 694- 702: yrtan TiyGiigv-K vwifk RS3_CYAPA : 193- 201: ykraq TiyGvlgv-K vwifk RS3_ECOLI : 190- 198: tseah TtyGvigv-K vwifk RS3_EPIVI : 204- 212: symvr TthGvlgi-K iwifi RS3_EUGGR : 204- 212: ndiah TiyGvlgi-K vwvyk RS3_GRATE : 193- 201: yktth TiyGilgv-K ygylk RS3_HAEIN : 190- 198: taeah TtyGvigv-K vwifk RS3_HALHA : 38- 47: melap TpmGmqivlK aekpg RS3_HALMA : 38- 47: mdvak TpmGtqivlK aekpg RS3_MAIZE : 208- 216: cypir TiyGvlgv-K iwifv RS3_MARPO : 201- 209: yyaaq TiyGvlgi-K vwifq RS3_MYCCA : 193- 201: lyeap TtyGqigv-K vwinh RS3_ORYSA : 223- 231: cypir TiyGvlgv-K iwifv RS3_PINTH : 203- 211: yypvk TiyGvlgi-K iwile RS3_SPIOL : 202- 210: aytvr TiyGvlgi-K iwifm RS3_THEMA : 191- 199: tataw TkyGtigi-K vwiyk RS3_TOBAC : 202- 210: sytvr TiyGvlgi-K iwifl RT03_MAIZE : 531- 539: paevs TrdGisgv-K vrisy RT03_MARPO : 398- 406: ktqas TpyGilgv-K vwvsy RT03_OENBE : 535- 543: paevs TryGilgv-K vwisy RT03_PETHY : 534- 542: paevs TryGisgv-K vwisy O 15: 12.0102 34( 29) G-x(2,3)-G-x-E Occurences: 34(29) RS3_ACHAX : 79- 85: hsgkp GvviGrE aatmk RS3_ACHFL : 158- 164: ktsvs GrlgGvE marte RS3_ACHLA : 78- 84: yvskp GialGkE asvkn RS3_ACHLA : 159- 165: rtlvs GrlgGaE marse RS3_ACHSP : 159- 165: ktlvs GrlgGaE marse RS3_ANAAB : 79- 85: htakp GvviGhE aetkn RS3_ANAAB : 160- 166: ktlis GrlgGaE iarse RS3_BACST : 76- 81: pgmvi Gkg-GsE vealr RS3_BACSU : 76- 81: pgmvi Gkg-GsE vealr RS3_CHLEU : 739- 745: kiqva GrlnGaE iarte RS3_CHLRE : 658- 664: kiqva GrlnGaE iarse RS3_CYAPA : 80- 85: vvvgr Ggr-GiE vlrkg RS3_CYAPA : 157- 163: kiqis GrlnGaE iarse RS3_ECOLI : 154- 160: kvevs GrlgGaE iarte RS3_EPIVI : 168- 174: qvqis GridGkE iarve RS3_EUGGR : 168- 174: kvqvs GrlnGiE iarte RS3_GRATE : 157- 163: kiqvs GrlnGsE iarie RS3_HAEIN : 154- 160: kvevs GrlgGaE iarse RS3_HALHA : 124- 129: rimes Gal-GaE ivlsg RS3_HALMA : 124- 129: rimes Gal-GaE ivlsg RS3_MAIZE : 172- 178: kiqia GrlaGkE iarae RS3_MARPO : 165- 171: kiqia GrlnGaE iarve RS3_MYCCA : 157- 163: ktavs GrlgGvE marte RS3_ORYSA : 187- 193: kvkia GrlaGkE iarae RS3_PINTH : 88- 94: lllie GrgqGiE klrnd RS3_PINTH : 167- 173: qiqia GrldGkE iarve RS3_SPIOL : 166- 172: qiqia GridGkE iarie RS3_THEMA : 78- 83: pgiii Grk-GsE itslr RS3_THEMA : 155- 161: kvmva GrlgGaE iarre RS3_TOBAC : 166- 172: qiqia GridGkE iarve RT03_MAIZE : 495- 501: riccs GrlgGaE iarte RT03_MARPO : 362- 368: rigcs GrlnGaE iakte RT03_OENBE : 499- 505: riccs GrskGaE iarte RT03_PETHY : 498- 504: riccs GrleGaE iarte P 16: 11.5102 29( 29) G-x(3)-A-x(0,2)-E Occurences: 29(29) RS3_ACHAX : 163- 170: sqrlg GremArtE gyseg RS3_ACHFL : 162- 169: sgrlg GvemArtE gyieg RS3_ACHLA : 163- 170: sgrlg GaemArsE gyseg RS3_ACHSP : 163- 170: sgrlg GaemArsE gyseg RS3_ANAAB : 164- 171: sgrlg GaeiArsE gyneg RS3_BACST : 157- 164: vrrlg GaeiArsE hyseg RS3_BACSU : 157- 164: sgrlg GadiArpE yyseg RS3_CHLEU : 743- 750: agrln GaeiArtE wvrag RS3_CHLRE : 662- 669: agrln GaeiArsE wvrag RS3_CYAPA : 161- 168: sgrln GaeiArsE wsreg RS3_ECOLI : 158- 165: sgrlg GaeiArtE wyreg RS3_EPIVI : 172- 179: sgrid GkeiArvE wireg RS3_EUGGR : 172- 179: sgrln GieiArtE wfreg RS3_GRATE : 161- 168: sgrln GseiAriE svreg RS3_HAEIN : 158- 165: sgrlg GaeiArsE wyreg RS3_HALHA : 124- 129: rimes GalgA--E ivlsg RS3_HALMA : 124- 129: rimes GalgA--E ivlsg RS3_MAIZE : 176- 183: agrla GkeiAraE cikkg RS3_MARPO : 169- 176: agrln GaeiArvE wareg RS3_MYCCA : 161- 168: sgrlg GvemArtE gyleg RS3_ORYSA : 191- 198: agrla GkeiAraE cikkg RS3_PINTH : 171- 178: agrld GkeiArvE wdrgg RS3_SPIOL : 170- 177: agrid GkeiAriE wireg RS3_THEMA : 159- 166: agrlg GaeiArrE wylrg RS3_TOBAC : 170- 177: agrid GkeiArvE wireg RT03_MAIZE : 499- 506: sgrlg GaeiArtE cgkyg RT03_MARPO : 366- 373: sgrln GaeiAktE ckkyg RT03_OENBE : 503- 510: sgrsk GaeiArtE cgkyg RT03_PETHY : 502- 509: sgrle GaeiArtE cgkyg Q 17: 11.5102 35( 29) G-x(0,1)-E-x(1,2)-A Occurences: 35(29) RS3_ACHAX : 83- 87: pgvvi GrEa-A tmket RS3_ACHAX : 163- 167: sqrlg GrEm-A rtegy RS3_ACHFL : 162- 166: sgrlg GvEm-A rtegy RS3_ACHLA : 163- 167: sgrlg GaEm-A rsegy RS3_ACHSP : 163- 167: sgrlg GaEm-A rsegy RS3_ANAAB : 164- 168: sgrlg GaEi-A rsegy RS3_BACST : 79- 84: vigkg GsEveA lrkal RS3_BACST : 157- 161: vrrlg GaEi-A rsehy RS3_BACSU : 79- 84: vigkg GsEveA lrkal RS3_CHLEU : 743- 747: agrln GaEi-A rtewv RS3_CHLRE : 662- 666: agrln GaEi-A rsewv RS3_CYAPA : 161- 165: sgrln GaEi-A rsews RS3_ECOLI : 158- 162: sgrlg GaEi-A rtewy RS3_EPIVI : 172- 176: sgrid GkEi-A rvewi RS3_EUGGR : 172- 176: sgrln GiEi-A rtewf RS3_GRATE : 161- 165: sgrln GsEi-A riesv RS3_HAEIN : 158- 162: sgrlg GaEi-A rsewy RS3_HALHA : 155- 158: yikhn G-Ep-A eeivd RS3_HALHA : 221- 224: eelle G-Ed-A daeda RS3_HALMA : 155- 158: yvkhn G-Ep-A eeivd RS3_MAIZE : 176- 180: agrla GkEi-A raeci RS3_MARPO : 169- 173: agrln GaEi-A rvewa RS3_MYCCA : 161- 165: sgrlg GvEm-A rtegy RS3_ORYSA : 191- 195: agrla GkEi-A raeci RS3_PINTH : 171- 175: agrld GkEi-A rvewd RS3_SPIOL : 56- 61: tktss GvEgiA rieiq RS3_SPIOL : 170- 174: agrid GkEi-A riewi RS3_THEMA : 159- 163: agrlg GaEi-A rrewy RS3_TOBAC : 56- 61: mrtss GvEgiA rieiq RS3_TOBAC : 170- 174: agrid GkEi-A rvewi RT03_MAIZE : 499- 503: sgrlg GaEi-A rtecg RT03_MARPO : 366- 370: sgrln GaEi-A kteck RT03_OENBE : 91- 95: kksrp GkEk-A rwwef RT03_OENBE : 503- 507: sgrsk GaEi-A rtecg RT03_PETHY : 502- 506: sgrle GaEi-A rtecg R 18: 11.5102 52( 29) K-x(3,4)-G-x(2,3)-G Occurences: 52(29) RS3_ACHAX : 4- 13: mgq KvnpiGfrvG virdw RS3_ACHFL : 143- 151: klair KalkaGvk-G iktsv RS3_ACHFL : 153- 161: gvkgi KtsvsGrl-G gvema RS3_ACHFL : 153- 162: gvkgi KtsvsGrlgG vemar RS3_ACHLA : 4- 13: mgq KtnpnGlrlG iirtw RS3_ACHSP : 4- 13: mgq KtnpnGlrlG iirsw RS3_ACHSP : 154- 162: gakgv KtlvsGrl-G gaema RS3_ACHSP : 154- 163: gakgv KtlvsGrlgG aemar RS3_ANAAB : 4- 13: mgq KvspmGlrvG inrew RS3_ANAAB : 155- 163: gakga KtlisGrl-G gaeia RS3_ANAAB : 155- 164: gakga KtlisGrlgG aeiar RS3_BACST : 3- 12: gq KvnpiGlriG iirdw RS3_BACSU : 3- 12: gq KvnpvGlriG virdw RS3_BACSU : 148- 156: gaqgv KtmvsGrl-G gadia RS3_BACSU : 148- 157: gaqgv KtmvsGrlgG adiar RS3_CHLEU : 4- 13: mgq KvhpsGfrvG itkkh RS3_CHLEU : 734- 743: eikgv KiqvaGrlnG aeiar RS3_CHLRE : 4- 13: mgq KvhplGfrvG itkkh RS3_CHLRE : 653- 662: rvkgv KiqvaGrlnG aeiar RS3_CYAPA : 4- 13: mgq KihpiGfrlG itqkh RS3_CYAPA : 152- 161: giegi KiqisGrlnG aeiar RS3_ECOLI : 3- 12: gq KvhpnGirlG ivkpw RS3_ECOLI : 149- 157: gakgi KvevsGrl-G gaeia RS3_ECOLI : 149- 158: gakgi KvevsGrlgG aeiar RS3_EPIVI : 4- 13: mgq KinplGfrlG ttqsh RS3_EUGGR : 4- 13: mgq KvhplGfrlG itksh RS3_EUGGR : 163- 172: gaegi KvqvsGrlnG ieiar RS3_GRATE : 4- 13: mgq KthplGfriG itrdh RS3_GRATE : 152- 161: knqgi KiqvsGrlnG seiar RS3_HAEIN : 3- 12: gq KvhphGirlG ivkpw RS3_HAEIN : 149- 157: gakgi KvevsGrl-G gaeia RS3_HAEIN : 149- 158: gakgi KvevsGrlgG aeiar RS3_HALHA : 47- 56: mqivl KaekpGmviG kggkn RS3_HALMA : 47- 56: tqivl KaekpGmviG kggkn RS3_MAIZE : 4- 13: mgq KinplGfrlG ttqnh RS3_MAIZE : 167- 176: dikgi KiqiaGrlaG keiar RS3_MARPO : 4- 13: mgq KinplGfrlG itqnh RS3_MARPO : 160- 169: nikgi KiqiaGrlnG aeiar RS3_MYCCA : 142- 150: klaik KalkaGak-G iktav RS3_MYCCA : 152- 160: gakgi KtavsGrl-G gvema RS3_MYCCA : 152- 161: gakgi KtavsGrlgG vemar RS3_ORYSA : 4- 13: mgq KinplGfrlG ttqnh RS3_ORYSA : 182- 191: dikgv KvkiaGrlaG keiar RS3_PINTH : 4- 13: maq KinplGfrlG vtqne RS3_PINTH : 202- 209: cyypv Ktiy-Gvl-G ikiwi RS3_SPIOL : 4- 13: mgq KinplGfrlG ttqsh RS3_SPIOL : 52- 59: vqknt Ktss-Gve-G iarie RS3_THEMA : 4- 13: mgq KvhprGfrlG lsadw RS3_THEMA : 69- 78: initv KtarpGiiiG rkgse RS3_THEMA : 150- 158: gaqgi KvmvaGrl-G gaeia RS3_THEMA : 150- 159: gaqgi KvmvaGrlgG aeiar RS3_TOBAC : 4- 13: mgq KinplGfrlG ttqgh RT03_MAIZE : 87- 95: lkrrd Ksrp-GkdkG rwwaf RT03_MAIZE : 382- 390: melie KfidlGri-G klikg RT03_MARPO : 184- 192: vraek KkaifGse-G dffgf RT03_MARPO : 185- 192: raekk Kaif-Gse-G dffgf RT03_MARPO : 246- 254: kaipa Kteq-GtqsG esicq RT03_MARPO : 354- 362: kcpyv KgiriGcs-G rlnga RT03_OENBE : 386- 394: melie KfidlGgi-G elikg RT03_PETHY : 93- 100: rpvke Kgrw-Gaf-G kvgpi S 19: 11.5102 53( 29) G-x(0,1)-R-x(0,1)-G Occurences: 53(29) RS3_ACHAX : 9- 13: kvnpi GfRvG virdw RS3_ACHFL : 158- 161: ktsvs G-RlG gvema RS3_ACHLA : 9- 13: ktnpn GlRlG iirtw RS3_ACHLA : 159- 162: rtlvs G-RlG gaema RS3_ACHSP : 9- 13: ktnpn GlRlG iirsw RS3_ACHSP : 82- 85: pgivi G-RdG etrnk RS3_ACHSP : 159- 162: ktlvs G-RlG gaema RS3_ANAAB : 9- 13: kvspm GlRvG inrew RS3_ANAAB : 160- 163: ktlis G-RlG gaeia RS3_BACST : 8- 12: kvnpi GlRiG iirdw RS3_BACST : 143- 146: ramrp G-RkG vktmv RS3_BACSU : 8- 12: kvnpv GlRiG virdw RS3_BACSU : 153- 156: ktmvs G-RlG gadia RS3_CHLEU : 9- 13: kvhps GfRvG itkkh RS3_CHLRE : 9- 13: kvhpl GfRvG itkkh RS3_CYAPA : 9- 13: kihpi GfRlG itqkh RS3_CYAPA : 78- 80: pgvvv G-R-G grgie RS3_CYAPA : 78- 81: pgvvv G-RgG rgiev RS3_CYAPA : 80- 83: vvvgr GgR-G ievlr RS3_CYAPA : 81- 83: vvgrg G-R-G ievlr RS3_ECOLI : 8- 12: kvhpn GiRlG ivkpw RS3_ECOLI : 154- 157: kvevs G-RlG gaeia RS3_EPIVI : 9- 13: kinpl GfRlG ttqsh RS3_EUGGR : 9- 13: kvhpl GfRlG itksh RS3_EUGGR : 84- 87: pervi G-RdG qglsr RS3_GRATE : 9- 13: kthpl GfRiG itrdh RS3_GRATE : 81- 83: ilgkl G-R-G ledlr RS3_HAEIN : 8- 12: kvhph GiRlG ivkpw RS3_HAEIN : 154- 157: kvevs G-RlG gaeia RS3_HALHA : 138- 141: sgkvt GnR-G rvekf RS3_HALMA : 26- 29: faeel G-RaG yggmd RS3_MAIZE : 9- 13: kinpl GfRlG ttqnh RS3_MARPO : 9- 13: kinpl GfRlG itqnh RS3_MYCCA : 157- 160: ktavs G-RlG gvema RS3_ORYSA : 9- 13: kinpl GfRlG ttqnh RS3_PINTH : 9- 13: kinpl GfRlG vtqne RS3_PINTH : 88- 90: lllie G-R-G qgiek RS3_SPIOL : 9- 13: kinpl GfRlG ttqsh RS3_THEMA : 9- 13: kvhpr GfRlG lsadw RS3_THEMA : 78- 81: pgiii G-RkG seits RS3_THEMA : 155- 158: kvmva G-RlG gaeia RS3_TOBAC : 9- 13: kinpl GfRlG ttqgh RT03_MAIZE : 54- 58: trltf GfRlG rciil RT03_MAIZE : 124- 126: rnevr G-R-G agkrv RT03_MAIZE : 387- 390: kfidl G-RiG klikg RT03_MAIZE : 495- 498: riccs G-RlG gaeia RT03_MARPO : 54- 58: tgntf GfRlG rciih RT03_MARPO : 355- 359: cpyvk GiRiG csgrl RT03_OENBE : 54- 58: trltf GfRlG rciil RT03_OENBE : 123- 126: ernev GgR-G agkrv RT03_OENBE : 124- 126: rnevg G-R-G agkrv RT03_PETHY : 53- 57: trltf GfRlG rciil RT03_PETHY : 94- 97: pvkek G-RwG afgkv RT03_PETHY : 123- 125: rnevr G-R-G agkrv T 20: 11.5102 38( 29) G-x(1,3)-G-x-E Occurences: 38(29) RS3_ACHAX : 79- 85: hsgkp GvviGrE aatmk RS3_ACHFL : 158- 164: ktsvs GrlgGvE marte RS3_ACHLA : 78- 84: yvskp GialGkE asvkn RS3_ACHLA : 159- 165: rtlvs GrlgGaE marse RS3_ACHSP : 159- 165: ktlvs GrlgGaE marse RS3_ANAAB : 79- 85: htakp GvviGhE aetkn RS3_ANAAB : 160- 166: ktlis GrlgGaE iarse RS3_BACST : 76- 81: pgmvi Gkg-GsE vealr RS3_BACSU : 76- 81: pgmvi Gkg-GsE vealr RS3_CHLEU : 739- 745: kiqva GrlnGaE iarte RS3_CHLRE : 658- 664: kiqva GrlnGaE iarse RS3_CYAPA : 80- 85: vvvgr Ggr-GiE vlrkg RS3_CYAPA : 81- 85: vvgrg Gr--GiE vlrkg RS3_CYAPA : 157- 163: kiqis GrlnGaE iarse RS3_ECOLI : 154- 160: kvevs GrlgGaE iarte RS3_EPIVI : 168- 174: qvqis GridGkE iarve RS3_EUGGR : 168- 174: kvqvs GrlnGiE iarte RS3_GRATE : 81- 85: ilgkl Gr--GlE dlrkk RS3_GRATE : 157- 163: kiqvs GrlnGsE iarie RS3_HAEIN : 154- 160: kvevs GrlgGaE iarse RS3_HALHA : 124- 129: rimes Gal-GaE ivlsg RS3_HALMA : 124- 129: rimes Gal-GaE ivlsg RS3_MAIZE : 172- 178: kiqia GrlaGkE iarae RS3_MARPO : 88- 92: lvesr Gq--GiE qlkln RS3_MARPO : 165- 171: kiqia GrlnGaE iarve RS3_MYCCA : 157- 163: ktavs GrlgGvE marte RS3_ORYSA : 187- 193: kvkia GrlaGkE iarae RS3_PINTH : 88- 94: lllie GrgqGiE klrnd RS3_PINTH : 90- 94: liegr Gq--GiE klrnd RS3_PINTH : 167- 173: qiqia GrldGkE iarve RS3_SPIOL : 166- 172: qiqia GridGkE iarie RS3_THEMA : 78- 83: pgiii Grk-GsE itslr RS3_THEMA : 155- 161: kvmva GrlgGaE iarre RS3_TOBAC : 166- 172: qiqia GridGkE iarve RT03_MAIZE : 495- 501: riccs GrlgGaE iarte RT03_MARPO : 362- 368: rigcs GrlnGaE iakte RT03_OENBE : 499- 505: riccs GrskGaE iarte RT03_PETHY : 498- 504: riccs GrleGaE iarte Number of patterns evaluated by Pratt:1312 Total running time: 4 seconds