------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 34 sequences from file RIBOSOMAL_S2_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 34 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S2_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NABA_YEAST 251 NABB_YEAST 251 RS2_ASTLO 242 RS2_BACSU 20 RS2_ECOLI 240 RS2_EPIVI 237 RS2_EUGGR 240 RS2_GALSU 233 RS2_HAEIN 251 RS2_HALMA 266 RS2_MAIZE 236 RS2_MARPO 235 RS2_ORYSA 236 RS2_PEA 236 RS2_PINTH 234 RS2_SPICI 183 RS2_SPIOL 236 RS2_SPIPL 251 RS2_SULAC 154 RS2_THETH 114 RS2_TOBAC 236 RS2_WHEAT 236 RSP4_ARATH 298 RSP4_BOVIN 295 RSP4_CHLVR 293 RSP4_CRIGR 295 RSP4_DROME 270 RSP4_HUMAN 295 RSP4_MOUSE 295 RSP4_RAT 295 RSP4_TRIGR 316 RSP4_URECA 317 RT02_MARPO 237 RT04_YEAST 394 Pratt run started at Thu Feb 6 21:06:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 123( 34) A-x(1,2)-V 2: 7.8401 141( 34) L-x(1,2)-A 3: 7.8401 98( 34) L-x(0,1)-L 4: 7.8401 113( 34) I-x(4,5)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 123( 34) A-x(1,2)-V B 2: 7.8401 141( 34) L-x(1,2)-A C 3: 7.8401 98( 34) L-x(0,1)-L D 4: 7.8401 113( 34) I-x(4,5)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 123( 34) A-x(1,2)-V Occurences: 123(34) NABA_YEAST : 25- 28: nthlg ArnV qvhqe NABA_YEAST : 135- 138: qaike AsyV nipvi NABA_YEAST : 177- 180: iwyll AreV lrlrg NABA_YEAST : 186- 188: lrlrg Al-V drtqp NABA_YEAST : 246- 249: waeen AdnV ew NABB_YEAST : 25- 28: nthlg ArnV qvhqe NABB_YEAST : 135- 138: qaike AsyV nipvi NABB_YEAST : 177- 180: iwyll AreV lrlrg NABB_YEAST : 186- 188: lrlrg Al-V drtqp NABB_YEAST : 246- 249: waeen AdnV ew RS2_ASTLO : 85- 87: klkhf An-V tksfy RS2_BACSU : 11- 13: hqlle Ag-V xfgxz RS2_ECOLI : 1- 3: At-V smrdm RS2_ECOLI : 11- 13: rdmlk Ag-V hfghq RS2_ECOLI : 159- 162: gglpd AlfV idadh RS2_ECOLI : 184- 186: gipvf Ai-V dtnsd RS2_ECOLI : 217- 220: ylgav AatV regrs RS2_ECOLI : 218- 220: lgava At-V regrs RS2_EPIVI : 16- 18: eemig Ag-V sfghg RS2_EPIVI : 139- 141: kkkde Aa-V krqla RS2_EUGGR : 65- 68: rkgkr AlfV ctkrf RS2_GALSU : 13- 16: lsell AarV hlghr RS2_GALSU : 14- 16: sella Ar-V hlghr RS2_HAEIN : 13- 15: kenim Aq-V smrdm RS2_HAEIN : 23- 25: rdmin Ag-V hfghq RS2_HAEIN : 171- 174: gglpd AlfV igadh RS2_HAEIN : 196- 198: gipvf Ai-V dtnst RS2_HAEIN : 205- 207: tnstp Ag-V dfvip RS2_HAEIN : 229- 232: yvsaa AaaV kegrg RS2_HAEIN : 230- 232: vsaaa Aa-V kegrg RS2_HAEIN : 240- 242: grgne Aq-V aeela RS2_HALMA : 87- 89: edylg Ag-V higtq RS2_HALMA : 161- 163: aeaig Ar-V rtgrf RS2_HALMA : 196- 199: dpigd AqaV keait RS2_HALMA : 202- 205: qavke AitV gipvi RS2_HALMA : 235- 238: nkgrk AlsV vywll RS2_MAIZE : 16- 18: kemie Ag-V hfghg RS2_MAIZE : 81- 84: tkkra AdlV asaai RS2_MARPO : 16- 18: eemme Ag-V hfghq RS2_ORYSA : 16- 18: kemie Ag-V hfghg RS2_ORYSA : 81- 84: tkkra AdlV asaai RS2_PEA : 16- 18: eemme Ag-V hfghd RS2_PEA : 81- 84: tkkka AdsV traai RS2_PINTH : 16- 18: eemme Ar-V hlghk RS2_SPICI : 162- 165: rklpq AliV vdpke RS2_SPIOL : 16- 18: eemme Ag-V hfghg RS2_SPIOL : 81- 84: tknka AdsV araai RS2_SPIOL : 138- 140: lpkrd Aa-V vkrql RS2_SPIOL : 138- 141: lpkrd AavV krqls RS2_SPIOL : 139- 141: pkrda Av-V krqls RS2_SPIPL : 12- 14: rdmlk Ag-V hfghq RS2_SPIPL : 160- 163: gglpd AlfV idvdh RS2_SPIPL : 185- 187: gipvi Av-V dtnsn RS2_SULAC : 39- 41: dtyls Ag-V higth RS2_THETH : 12- 14: kelle Ag-V hfgne RS2_THETH : 29- 32: nptke AiaV reark RS2_THETH : 95- 97: pspsy Al-V qeaea RS2_TOBAC : 16- 18: eemme Ag-V hfghg RS2_TOBAC : 81- 84: tknka AdsV ewaai RS2_WHEAT : 16- 18: kemie Ag-V hfghg RSP4_ARATH : 10- 12: gsass Ah-V sqkea RSP4_ARATH : 17- 19: vsqke Ad-V rmmca RSP4_ARATH : 24- 27: vrmmc AaeV hlgtk RSP4_ARATH : 25- 27: rmmca Ae-V hlgtk RSP4_ARATH : 65- 68: eklqm AarV ivaie RSP4_ARATH : 66- 68: klqma Ar-V ivaie RSP4_ARATH : 183- 186: lfwll ArmV lqmrg RSP4_BOVIN : 4- 7: msg AldV lqmke RSP4_BOVIN : 64- 66: llaar Ai-V aienp RSP4_BOVIN : 72- 74: aienp Ad-V sviss RSP4_BOVIN : 137- 140: qplte AsyV nlpti RSP4_BOVIN : 168- 171: cnnkg AhsV glmww RSP4_BOVIN : 179- 182: mwwml AreV lrmrg RSP4_CHLVR : 20- 23: vvkfl AagV hlgst RSP4_CHLVR : 21- 23: vkfla Ag-V hlgst RSP4_CHLVR : 72- 74: sienp Ad-V cviss RSP4_CHLVR : 137- 140: qalte AsyV nipvi RSP4_CHLVR : 179- 182: mwwil AreV lhlrg RSP4_CRIGR : 4- 7: msg AldV lqmke RSP4_CRIGR : 64- 66: llaar Ai-V aienp RSP4_CRIGR : 72- 74: aienp Ad-V sviss RSP4_CRIGR : 137- 140: qplte AsyV nlpti RSP4_CRIGR : 168- 171: cnnkg AhsV glmww RSP4_CRIGR : 179- 182: mwwml AreV rrmrg RSP4_DROME : 43- 46: vykrr AdgV nilnl RSP4_DROME : 64- 66: qlaar Ai-V aidnp RSP4_DROME : 137- 140: qpime AsyV nipvi RSP4_DROME : 179- 182: mwwll AreV lrlrg RSP4_DROME : 241- 244: ettnw AdeV aaetv RSP4_DROME : 246- 249: adeva AetV ggved RSP4_HUMAN : 4- 7: msg AldV lqmke RSP4_HUMAN : 64- 66: llaar Ai-V aienp RSP4_HUMAN : 72- 74: aienp Ad-V sviss RSP4_HUMAN : 137- 140: qplte AsyV nlpti RSP4_HUMAN : 168- 171: cnnkg AhsV glmww RSP4_HUMAN : 179- 182: mwwml AreV lrmrg RSP4_MOUSE : 4- 7: msg AldV lqmke RSP4_MOUSE : 64- 66: llaar Ai-V aienp RSP4_MOUSE : 72- 74: aienp Ad-V sviss RSP4_MOUSE : 137- 140: qplte AsyV nlpti RSP4_MOUSE : 155- 157: tdspl Ay-V diaip RSP4_MOUSE : 168- 171: cnnkg AhsV glmww RSP4_MOUSE : 179- 182: mwwml AreV lrmrg RSP4_RAT : 64- 66: llaar Ai-V aienp RSP4_RAT : 72- 74: aienp Ad-V sviss RSP4_RAT : 137- 140: qplte AsyV nlpti RSP4_RAT : 168- 171: cnnkg AhsV glmww RSP4_RAT : 179- 182: mwwml AreV lrmrg RSP4_TRIGR : 72- 74: aienp Ad-V cviss RSP4_TRIGR : 137- 140: qpvte AsyV nipvi RSP4_TRIGR : 221- 224: eardr AtaV keepa RSP4_TRIGR : 250- 252: agqpv Ae-V tdwaa RSP4_TRIGR : 257- 260: vtdwa AdsV kapva RSP4_TRIGR : 262- 264: adsvk Ap-V agigt RSP4_URECA : 27- 30: ashlg AnnV dfqme RSP4_URECA : 137- 140: qpvte AsyV nipvi RSP4_URECA : 179- 182: mwwml AreV lrlrg RSP4_URECA : 248- 251: evsdw AseV pvapv RSP4_URECA : 254- 256: sevpv Ap-V pilag RSP4_URECA : 260- 263: pvpil AggV daatt RT02_MARPO : 182- 184: qipiv Al-V dsnip RT04_YEAST : 191- 193: eslms Ag-V hlgqs RT04_YEAST : 232- 235: sylkr AakV vegvs RT04_YEAST : 233- 235: ylkra Ak-V vegvs RT04_YEAST : 233- 236: ylkra AkvV egvse B 2: 7.8401 141( 34) L-x(1,2)-A Occurences: 141(34) NABA_YEAST : 2- 4: s Lp-A tfdlt NABA_YEAST : 15- 18: pedaq LllA anthl NABA_YEAST : 16- 18: edaql Ll-A anthl NABA_YEAST : 16- 19: edaql LlaA nthlg NABA_YEAST : 17- 19: daqll La-A nthlg NABA_YEAST : 23- 25: aanth Lg-A rnvqv NABA_YEAST : 56- 59: ktwek LvlA ariia NABA_YEAST : 58- 60: weklv La-A riiaa NABA_YEAST : 86- 89: gqrav LkfA ahtga NABA_YEAST : 175- 177: gliwy Ll-A revlr NABA_YEAST : 183- 186: revlr LrgA lvdrt NABB_YEAST : 2- 4: s Lp-A tfdlt NABB_YEAST : 15- 18: pedaq LllA anthl NABB_YEAST : 16- 18: edaql Ll-A anthl NABB_YEAST : 16- 19: edaql LlaA nthlg NABB_YEAST : 17- 19: daqll La-A nthlg NABB_YEAST : 23- 25: aanth Lg-A rnvqv NABB_YEAST : 56- 59: ktwek LvlA ariia NABB_YEAST : 58- 60: weklv La-A riiaa NABB_YEAST : 86- 89: gqrav LkfA ahtga NABB_YEAST : 127- 129: vtdpr Ld-A qaike NABB_YEAST : 175- 177: gliwy Ll-A revlr NABB_YEAST : 183- 186: revlr LrgA lvdrt RS2_ASTLO : 173- 176: igqsd LkkA igecl RS2_BACSU : 8- 11: ismhq LleA gvxfg RS2_BACSU : 9- 11: smhql Le-A gvxfg RS2_ECOLI : 9- 11: smrdm Lk-A gvhfg RS2_ECOLI : 156- 159: kdmgg LpdA lfvid RS2_ECOLI : 213- 215: avtly Lg-A vaatv RS2_EPIVI : 54- 57: ktarf LseA cdlvf RS2_EPIVI : 221- 224: lilnk LvfA icegr RS2_EUGGR : 48- 51: qtivc LkkA cnfli RS2_EUGGR : 176- 179: reckk LgiA sitil RS2_GALSU : 11- 13: vtlse Ll-A arvhl RS2_GALSU : 11- 14: vtlse LlaA rvhlg RS2_GALSU : 12- 14: tlsel La-A rvhlg RS2_GALSU : 52- 55: qtafl LgeA cdyvk RS2_GALSU : 61- 63: cdyvk Ll-A kkgkk RS2_GALSU : 169- 171: dqrkd Lt-A vqecn RS2_HAEIN : 168- 171: kdmgg LpdA lfvig RS2_HAEIN : 246- 248: qvaee La-A dae RS2_HALMA : 9- 11: nekeg Ld-A sdsdf RS2_HALMA : 85- 87: pvedy Lg-A gvhig RS2_HALMA : 140- 142: epeqi La-A ssrqy RS2_HALMA : 242- 244: svvyw Ll-A netld RS2_MAIZE : 54- 57: rtarf LseA cdlvf RS2_MAIZE : 83- 85: kraad Lv-A saair RS2_MAIZE : 121- 123: sqfrd Lr-A eekmg RS2_MAIZE : 221- 224: lilnk LvfA isegr RS2_MARPO : 54- 57: qtarf LseA cdlva RS2_MARPO : 60- 62: seacd Lv-A nassk RS2_MARPO : 89- 91: iessa Lk-A rchyv RS2_MARPO : 221- 224: wilnk LtlA icegr RS2_ORYSA : 54- 57: rttrf LseA cdlvf RS2_ORYSA : 83- 85: kraad Lv-A saair RS2_ORYSA : 121- 123: sqfrd Lr-A eekme RS2_ORYSA : 221- 224: lilnk LvfA icegr RS2_PEA : 54- 57: ktarf LseA cdlaf RS2_PEA : 221- 224: lilnk LvfA icegr RS2_PINTH : 54- 57: ktars LseA cdllf RS2_PINTH : 83- 85: yqatd Lv-A saate RS2_PINTH : 221- 224: lilnr LtsA icegr RS2_SPICI : 10- 13: ltrem LweA gaqfg RS2_SPICI : 57- 59: edvkk Lm-A niaar RS2_SPICI : 159- 162: kgwrk LpqA livvd RS2_SPIOL : 54- 57: rtarf LseA cdlvf RS2_SPIOL : 221- 224: liltk LvfA icegr RS2_SPIPL : 10- 12: tmrdm Lk-A gvhfg RS2_SPIPL : 117- 119: krfrd Le-A qandg RS2_SPIPL : 157- 160: kdmgg LpdA lfvid RS2_SULAC : 37- 39: pldty Ls-A gvhig RS2_SULAC : 76- 79: kider LrvA akfis RS2_SULAC : 92- 95: rpeav LtvA srpya RS2_THETH : 9- 12: itvke LleA gvhfg RS2_THETH : 10- 12: tvkel Le-A gvhfg RS2_THETH : 73- 76: siqli LsrA vdlii RS2_TOBAC : 54- 57: rtarf LseA cdlvf RS2_TOBAC : 221- 224: lilnk LvfA icegr RS2_WHEAT : 54- 57: rtarf LseA cdlvf RS2_WHEAT : 83- 85: kratd Lv-A saair RS2_WHEAT : 121- 123: sqfrd Lr-A eekmg RSP4_ARATH : 62- 65: ktwek LqmA arviv RSP4_ARATH : 92- 95: gqrav LkfA qytga RSP4_ARATH : 181- 183: gclfw Ll-A rmvlq RSP4_ARATH : 231- 233: aeyga Lp-A peygm RSP4_BOVIN : 19- 21: dvlkf La-A gthlg RSP4_BOVIN : 58- 61: rtwek LllA araiv RSP4_BOVIN : 59- 61: twekl Ll-A araiv RSP4_BOVIN : 59- 62: twekl LlaA raiva RSP4_BOVIN : 60- 62: wekll La-A raiva RSP4_BOVIN : 88- 91: gqrav LkfA aatga RSP4_BOVIN : 134- 137: adhqp LteA syvnl RSP4_CHLVR : 19- 21: dvvkf La-A gvhlg RSP4_CHLVR : 58- 61: ktwek LilA ariia RSP4_CHLVR : 60- 62: wekli La-A riias RSP4_CHLVR : 88- 91: gtrav LkfA qstga RSP4_CHLVR : 134- 137: hdnqa LteA syvni RSP4_CRIGR : 19- 21: dvlkf La-A gthlg RSP4_CRIGR : 58- 61: rtwek LllA araiv RSP4_CRIGR : 59- 61: twekl Ll-A araiv RSP4_CRIGR : 59- 62: twekl LlaA raiva RSP4_CRIGR : 60- 62: wekll La-A raiva RSP4_CRIGR : 88- 91: gqrav LkfA aatga RSP4_CRIGR : 134- 137: adhqp LteA syvnl RSP4_DROME : 19- 21: ditkm Lv-A tthlg RSP4_DROME : 58- 61: ktwek LqlA araiv RSP4_DROME : 60- 62: weklq La-A raiva RSP4_DROME : 88- 91: gqrav LkfA kytdt RSP4_DROME : 177- 179: glmww Ll-A revlr RSP4_HUMAN : 19- 21: dvlkf La-A gthlg RSP4_HUMAN : 58- 61: rtwek LllA araiv RSP4_HUMAN : 59- 61: twekl Ll-A araiv RSP4_HUMAN : 59- 62: twekl LlaA raiva RSP4_HUMAN : 60- 62: wekll La-A raiva RSP4_HUMAN : 88- 91: gqrav LkfA aatga RSP4_HUMAN : 134- 137: adhqp LteA syvnl RSP4_MOUSE : 18- 20: edvlk Ll-A agthl RSP4_MOUSE : 18- 21: edvlk LlaA gthlg RSP4_MOUSE : 19- 21: dvlkl La-A gthlg RSP4_MOUSE : 58- 61: rtwek LllA araiv RSP4_MOUSE : 59- 61: twekl Ll-A araiv RSP4_MOUSE : 59- 62: twekl LlaA raiva RSP4_MOUSE : 60- 62: wekll La-A raiva RSP4_MOUSE : 88- 91: gqrav LkfA aatga RSP4_MOUSE : 134- 137: adhqp LteA syvnl RSP4_RAT : 19- 21: dvlkf La-A gthlg RSP4_RAT : 58- 61: rtwek LllA araiv RSP4_RAT : 59- 61: twekl Ll-A araiv RSP4_RAT : 59- 62: twekl LlaA raiva RSP4_RAT : 60- 62: wekll La-A raiva RSP4_RAT : 88- 91: gqrav LkfA aatga RSP4_RAT : 134- 137: adhqp LteA syvnl RSP4_TRIGR : 58- 61: rtwek LlmA ariiv RSP4_TRIGR : 59- 61: twekl Lm-A ariiv RSP4_TRIGR : 59- 62: twekl LmaA riiva RSP4_TRIGR : 185- 188: revlr LrgA isrdv RSP4_URECA : 19- 22: dvtkf LacA shlga RSP4_URECA : 25- 27: acash Lg-A nnvdf RSP4_URECA : 59- 61: twekv Ll-A araia RSP4_URECA : 59- 62: twekv LlaA raiaa RSP4_URECA : 60- 62: wekvl La-A raiaa RSP4_URECA : 88- 91: gqrav LkfA hytga RT02_MARPO : 124- 127: sahpn LkdA ftssp RT02_MARPO : 171- 173: nsmai Le-A nqlqi RT04_YEAST : 89- 91: dkeqq Le-A elsdf RT04_YEAST : 160- 162: mrtak Lg-A tiskv RT04_YEAST : 188- 191: itves LmsA gvhlg RT04_YEAST : 229- 232: qtlsy LkrA akvve RT04_YEAST : 259- 262: gqkrg LeeA akkth RT04_YEAST : 332- 335: enrna LleA iksrv RT04_YEAST : 333- 335: nrnal Le-A iksrv RT04_YEAST : 376- 379: fllgv LarA gqrgl C 3: 7.8401 98( 34) L-x(0,1)-L Occurences: 98(34) NABA_YEAST : 15- 16: pedaq L-L laant NABA_YEAST : 15- 17: pedaq LlL aanth NABA_YEAST : 16- 17: edaql L-L aanth NABA_YEAST : 56- 58: ktwek LvL aarii NABA_YEAST : 175- 176: gliwy L-L arevl NABA_YEAST : 181- 183: larev LrL rgalv NABB_YEAST : 15- 16: pedaq L-L laant NABB_YEAST : 15- 17: pedaq LlL aanth NABB_YEAST : 16- 17: edaql L-L aanth NABB_YEAST : 56- 58: ktwek LvL aarii NABB_YEAST : 175- 176: gliwy L-L arevl NABB_YEAST : 181- 183: larev LrL rgalv RS2_ASTLO : 15- 17: mffar LhL ghfst RS2_ASTLO : 127- 129: ssvdg LkL ydslt RS2_ASTLO : 181- 183: aigec LkL nvpti RS2_BACSU : 8- 9: ismhq L-L eagvx RS2_ECOLI : 211- 213: iravt LyL gavaa RS2_EPIVI : 216- 218: issir LiL nklvf RS2_EUGGR : 41- 42: lhiid L-L qtivc RS2_EUGGR : 125- 126: ekhhn L-L tkker RS2_EUGGR : 132- 134: tkker LvL kkkkl RS2_EUGGR : 139- 141: lkkkk LkL kkyfs RS2_EUGGR : 209- 211: ilsvs LiL svlcn RS2_GALSU : 11- 12: vtlse L-L aarvh RS2_GALSU : 51- 52: vqtaf L-L geacd RS2_GALSU : 61- 62: cdyvk L-L akkgk RS2_GALSU : 102- 103: rwlgg L-L tnwvt RS2_GALSU : 211- 213: icsvk LiL gklvd RS2_HAEIN : 58- 60: nlekt LpL fneal RS2_HAEIN : 155- 157: remek LeL slggi RS2_HAEIN : 157- 159: mekle LsL ggikd RS2_HALMA : 77- 78: qsead L-L ipved RS2_HALMA : 242- 243: svvyw L-L anetl RS2_MAIZE : 216- 218: mtsir LiL nklvf RS2_MARPO : 221- 223: wilnk LtL aiceg RS2_ORYSA : 216- 218: mtsir LiL nklvf RS2_PEA : 216- 218: iasir LiL nklvf RS2_PINTH : 60- 61: seacd L-L fdiag RS2_PINTH : 216- 218: iasiq LiL nrlts RS2_SPICI : 127- 129: eknge LkL lpkke RS2_SPICI : 129- 130: ngelk L-L pkkeq RS2_SPIOL : 216- 218: iasir LiL tklvf RS2_SPIPL : 47- 49: nlekt LpL fndal RS2_SULAC : 29- 30: gtvie L-L vpldt RS2_THETH : 9- 10: itvke L-L eagvh RS2_THETH : 71- 73: irsiq LiL sravd RS2_TOBAC : 216- 218: issir LiL nklvf RS2_WHEAT : 216- 218: mtsir LiL nklvf RSP4_ARATH : 125- 126: fsepr L-L iltdp RSP4_ARATH : 126- 128: seprl LiL tdprt RSP4_ARATH : 181- 182: gclfw L-L armvl RSP4_BOVIN : 58- 59: rtwek L-L laara RSP4_BOVIN : 58- 60: rtwek LlL aarai RSP4_BOVIN : 59- 60: twekl L-L aarai RSP4_BOVIN : 121- 122: frepr L-L vvtdp RSP4_CHLVR : 8- 10: egida LsL keedv RSP4_CHLVR : 58- 60: ktwek LiL aarii RSP4_CHLVR : 121- 122: frepr L-L istdp RSP4_CHLVR : 183- 185: larev LhL rgiis RSP4_CRIGR : 58- 59: rtwek L-L laara RSP4_CRIGR : 58- 60: rtwek LlL aarai RSP4_CRIGR : 59- 60: twekl L-L aarai RSP4_CRIGR : 121- 122: frepr L-L vvtdp RSP4_DROME : 8- 10: ggldi LsL keddi RSP4_DROME : 49- 51: dgvni LnL gktwe RSP4_DROME : 58- 60: ktwek LqL aarai RSP4_DROME : 121- 122: frepr L-L vvtdp RSP4_DROME : 177- 178: glmww L-L arevl RSP4_DROME : 183- 185: larev LrL rgtis RSP4_DROME : 220- 221: aaake L-L pppki RSP4_HUMAN : 58- 59: rtwek L-L laara RSP4_HUMAN : 58- 60: rtwek LlL aarai RSP4_HUMAN : 59- 60: twekl L-L aarai RSP4_HUMAN : 121- 122: frepr L-L vvtdp RSP4_MOUSE : 16- 18: keedv LkL laagt RSP4_MOUSE : 18- 19: edvlk L-L aagth RSP4_MOUSE : 58- 59: rtwek L-L laara RSP4_MOUSE : 58- 60: rtwek LlL aarai RSP4_MOUSE : 59- 60: twekl L-L aarai RSP4_MOUSE : 121- 122: frepr L-L vvtdp RSP4_RAT : 58- 59: rtwek L-L laara RSP4_RAT : 58- 60: rtwek LlL aarai RSP4_RAT : 59- 60: twekl L-L aarai RSP4_RAT : 121- 122: frepr L-L vvtdp RSP4_TRIGR : 8- 10: ggldc LaL keddv RSP4_TRIGR : 58- 59: rtwek L-L maari RSP4_TRIGR : 183- 185: lsrev LrL rgais RSP4_URECA : 8- 10: gsidt LaL keedv RSP4_URECA : 59- 60: twekv L-L aarai RSP4_URECA : 121- 122: frepr L-L vvtdp RSP4_URECA : 183- 185: larev LrL rgtis RT02_MARPO : 6- 7: mynsn L-L viqkl RT02_MARPO : 12- 13: lviqk L-L stnay RT02_MARPO : 68- 69: sakgh L-L lvntn RT02_MARPO : 68- 70: sakgh LlL vntnp RT02_MARPO : 69- 70: akghl L-L vntnp RT04_YEAST : 13- 15: rnfrr LsL lrnps RT04_YEAST : 15- 16: frrls L-L rnpsl RT04_YEAST : 44- 45: ndevm L-L qqkll RT04_YEAST : 49- 50: llqqk L-L ydeir RT04_YEAST : 102- 103: frnya L-L nklfd RT04_YEAST : 146- 148: yssqe LfL rqlnh RT04_YEAST : 247- 249: sggii LfL gtrqg RT04_YEAST : 319- 320: qvkpd L-L vvlnp RT04_YEAST : 332- 333: enrna L-L eaiks RT04_YEAST : 372- 373: rsvnf L-L gvlar D 4: 7.8401 113( 34) I-x(4,5)-L Occurences: 113(34) NABA_YEAST : 140- 145: asyvn Ipvia-L tdlds NABA_YEAST : 143- 148: vnipv Ialtd-L dspse NABA_YEAST : 169- 175: rgkhs IgliwyL larev NABB_YEAST : 121- 127: eprlv IvtdprL daqai NABB_YEAST : 140- 145: asyvn Ipvia-L tdlds NABB_YEAST : 143- 148: vnipv Ialtd-L dspse NABB_YEAST : 169- 175: rgkhs IgliwyL larev RS2_ASTLO : 45- 51: yiidl IqtvyyL kkvcn RS2_ASTLO : 63- 69: ikkls IegkkiL fvsar RS2_ASTLO : 93- 98: tksfy Itedw-L ggtft RS2_ASTLO : 161- 167: kqmkk IpdvvfL igqsd RS2_ASTLO : 168- 173: dvvfl Igqsd-L kkaig RS2_ASTLO : 177- 183: dlkka IgeclkL nvpti RS2_ASTLO : 188- 194: lnvpt IsilfcL dtdcd RS2_BACSU : 3- 8: sv Ismhq-L leagv RS2_BACSU : 3- 9: sv IsmhqlL eagvx RS2_ECOLI : 110- 116: tvrqs IkrlkdL etqsq RS2_ECOLI : 150- 156: nslgg IkdmggL pdalf RS2_ECOLI : 172- 178: hehia IkeannL gipvf RS2_ECOLI : 206- 211: gndda Iravt-L ylgav RS2_EPIVI : 42- 47: vkhkg Ihftn-L tktar RS2_EPIVI : 155- 161: tylgg IkymtrL pdivi RS2_EPIVI : 185- 190: citig Iptig-L idtnc RS2_EPIVI : 211- 216: andda Issir-L ilnkl RS2_EUGGR : 2- 8: m ItvekmL nssvh RS2_EUGGR : 109- 115: tiknc InklkqL skqke RS2_EUGGR : 178- 184: ckklg IasitiL dtncd RS2_EUGGR : 204- 209: sndds Ilsvs-L ilsvl RS2_GALSU : 94- 99: cnsfy Inqrw-L ggllt RS2_GALSU : 150- 156: ryfng IrkmntL pdvvi RS2_GALSU : 163- 169: dvvii IdqrkdL tavqe RS2_GALSU : 206- 211: andda Icsvk-L ilgkl RS2_HAEIN : 52- 58: ngvhi InlektL plfne RS2_HAEIN : 122- 128: tvrqs IkrlkdL etqsq RS2_HAEIN : 162- 168: lslgg IkdmggL pdalf RS2_HALMA : 79- 85: eadll IpvedyL gagvh RS2_MAIZE : 110- 115: ltnws Itktr-L sqfrd RS2_MAIZE : 140- 145: krdaa Ilkrk-L stlqr RS2_MAIZE : 155- 161: rylgg IkymtrL pdivi RS2_MAIZE : 185- 190: cailg Iptis-L vdtnc RS2_MAIZE : 225- 231: klvfa IsegrsL yirnr RS2_MARPO : 42- 47: terkg Ihiin-L tqtar RS2_MARPO : 84- 89: qaadl Iessa-L karch RS2_MARPO : 155- 161: kylgg IkymtsL pdivi RS2_MARPO : 177- 183: kefta IqecitL gipti RS2_MARPO : 185- 190: citlg Iptic-L vdtdc RS2_MARPO : 217- 223: asirw IlnkltL aiceg RS2_ORYSA : 110- 115: ltnws Itktr-L sqfrd RS2_ORYSA : 140- 145: krdva Ilkrk-L stlqr RS2_ORYSA : 155- 161: rylgg IkymtrL pdivi RS2_ORYSA : 185- 190: cailg Iptis-L adtnc RS2_ORYSA : 225- 231: klvfa IcegrsL yirnh RS2_PEA : 42- 47: akrkg Ihitn-L tktar RS2_PEA : 155- 161: tylgg IkymtgL pdivi RS2_PEA : 185- 190: citlg Iptic-L idtnc RS2_PEA : 211- 216: andda Iasir-L ilnkl RS2_PINTH : 155- 161: kylgg IrymtsL pdiai RS2_PINTH : 185- 190: crtlg Iptic-L vdtdc RS2_PINTH : 211- 216: anddg Iasiq-L ilnrl RS2_PINTH : 225- 231: rltsa IcegraL rsl RS2_SPICI : 39- 44: geknk Ihiid-L qqtlw RS2_SPICI : 42- 48: nkihi IdlqqtL wrled RS2_SPICI : 148- 153: dklek Ilrwk-L kgwrk RS2_SPIOL : 42- 47: akckg Ihiin-L trtar RS2_SPIOL : 155- 161: tylgg IkymtgL pdivi RS2_SPIOL : 185- 190: citlg Iptic-L idtnc RS2_SPIOL : 211- 216: andda Iasir-L iltkl RS2_SPIPL : 38- 43: garnk Ihivn-L ektlp RS2_SPIPL : 111- 117: tirqs IkrfrdL eaqan RS2_SPIPL : 151- 157: rsigg IkdmggL pdalf RS2_SPIPL : 207- 212: gndda Iraiq-L yvgav RS2_SULAC : 27- 33: ekgtv IellvpL dtyls RS2_SULAC : 134- 139: yldny Iepev-L ivtdp RS2_THETH : 4- 9: pve Itvke-L leagv RS2_THETH : 4- 10: pve ItvkelL eagvh RS2_THETH : 40- 45: arklf Ipvia-L adtds RS2_THETH : 66- 71: gndda Irsiq-L ilsra RS2_TOBAC : 42- 47: akrkg Ihitn-L trtar RS2_TOBAC : 185- 190: citlg Iptic-L tdtnc RS2_TOBAC : 211- 216: andda Issir-L ilnkl RS2_WHEAT : 110- 115: ltnws Itktr-L sqfrd RS2_WHEAT : 140- 145: krdva Ilkrk-L stlqr RS2_WHEAT : 155- 161: rylgg IkymtrL pdivi RS2_WHEAT : 185- 190: cailg Iptis-L vdtnc RS2_WHEAT : 225- 231: klvfs IcegrsL yirnr RSP4_ARATH : 50- 55: rrndg Iyifn-L gktwe RSP4_ARATH : 138- 143: tdhqp Ikega-L gnipi RSP4_ARATH : 175- 181: kgkhs IgclfwL larmv RSP4_BOVIN : 46- 51: rksdg Iyiin-L krtwe RSP4_CHLVR : 5- 10: mseg Idals-L keedv RSP4_CHLVR : 46- 51: rksdg Ihiin-L rktwe RSP4_CHLVR : 142- 147: asyvn Ipvia-L cntds RSP4_CHLVR : 177- 183: gtmww IlarevL hlrgi RSP4_CRIGR : 46- 51: rksdg Iyiin-L krtwe RSP4_DROME : 82- 88: issrp IgqravL kfaky RSP4_DROME : 171- 177: ksahs IglmwwL larev RSP4_HUMAN : 46- 51: rksdg Iyiin-L krtwe RSP4_MOUSE : 46- 51: rksdg Iyiin-L krtwe RSP4_RAT : 46- 51: rksdg Iyiin-L krtwe RSP4_TRIGR : 25- 30: asgah Igssn-L dyqmt RSP4_TRIGR : 142- 147: asyvn Ipvia-L cntds RSP4_TRIGR : 168- 173: cnnks Ihsig-L mwwml RSP4_URECA : 5- 10: msgs Idtla-L keedv RSP4_URECA : 142- 147: asyvn Ipvia-L tntds RSP4_URECA : 168- 173: cnnks Ihsvg-L mwwml RT02_MARPO : 42- 48: nemai IdlektL iclrr RT02_MARPO : 62- 68: ligsi IsakghL llvnt RT02_MARPO : 170- 176: qnsma IleanqL qipiv RT02_MARPO : 178- 183: anqlq Ipiva-L vdsni RT02_MARPO : 207- 212: vndds Ikfvy-L fcnli RT02_MARPO : 217- 223: lfcnl ItktviL skrsq RT04_YEAST : 174- 179: yphkd Ifypp-L penit RT04_YEAST : 183- 188: plpen Itves-L msagv RT04_YEAST : 217- 222: geykg Ihiid-L nqtls RT04_YEAST : 220- 226: kgihi IdlnqtL sylkr Number of patterns evaluated by Pratt:11 Total running time: 0 seconds