------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file RIBOSOMAL_S28E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S28E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS28_ARATH 64 RS28_HUMAN 69 RS28_MAIZE 65 RS33_KLULA 67 RS33_KLUMA 67 RS33_YEAST 67 Pratt run started at Thu Feb 6 21:06:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 145.4518 6( 6) R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 2: 145.4518 6( 6) G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L 3: 141.2817 6( 6) T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 4: 141.2817 6( 6) V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R 5: 141.2817 6( 6) K-V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A 6: 137.1117 6( 6) G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 7: 137.1117 6( 6) V-x-K-V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R 8: 136.6117 8( 6) V-x(0,1)-K-V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R 9: 136.6117 7( 6) V-x(1,2)-K-V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R 10: 132.9416 6( 6) S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 11: 128.7716 6( 6) G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 12: 128.7716 6( 6) A-x(3)-K-V-x-G-R-T-G-S-x-G-x(2)-T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S 13: 124.6015 6( 6) T-Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 14: 120.4315 6( 6) Q-V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 15: 116.2614 6( 6) V-R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 16: 112.0914 6( 6) R-V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 17: 107.9213 6( 6) V-x-F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 18: 103.7513 6( 6) F-x(1,2)-D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 19: 100.0812 6( 6) D-x(2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R 20: 99.0812 7( 6) D-x(0,2)-R-x-I-x-R-N-V-K-G-P-V-x-E-x-D-x-L-x-L-x-E-S-E-R-E-A-R-R-L-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 179.2252 6( 6) R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R B 2: 179.2252 6( 6) G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L C 3: 178.6220 6( 6) K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A D 4: 178.6220 6( 6) V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R E 5: 175.0551 6( 6) T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R F 6: 174.4520 6( 6) V-x-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R G 7: 173.9520 8( 6) V-x(0,1)-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R H 8: 173.9520 7( 6) V-x(1,2)-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R I 9: 170.8851 6( 6) G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R J 10: 170.2820 6( 6) A-x-V-x-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S K 11: 166.7150 6( 6) S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R L 12: 159.3741 6( 6) G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R M 13: 148.6728 6( 6) T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R N 14: 144.5028 6( 6) Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R O 15: 140.3327 6( 6) V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R P 16: 136.1627 6( 6) R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Q 17: 131.9927 6( 6) V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R R 18: 124.6113 6( 6) F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R S 19: 120.9412 6( 6) D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R T 20: 115.1141 7( 6) D-x(0,2)-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 179.2252 6( 6) R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 16- 64: vkvmg RTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 20- 69: tkvlg RTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 16- 65: vkvmg RTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 18- 67: ikvlg RTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 18- 67: ikvlg RTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 18- 67: ikvlg RTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR B 2: 179.2252 6( 6) G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L Occurences: 6(6) RS28_ARATH : 15- 63: vvkvm GRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRL r RS28_HUMAN : 19- 68: vtkvl GRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRL r RS28_MAIZE : 15- 64: vvkvm GRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRL r RS33_KLULA : 17- 66: vikvl GRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRL r RS33_KLUMA : 17- 66: vikvl GRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRL r RS33_YEAST : 17- 66: vikvl GRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRL r C 3: 178.6220 6( 6) K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A Occurences: 6(6) RS28_ARATH : 12- 60: havvv KVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREA rrlr RS28_HUMAN : 16- 65: larvt KVLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREA rrlr RS28_MAIZE : 12- 61: lavvv KVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREA rrlr RS33_KLULA : 14- 63: lakvi KVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREA rrlr RS33_KLUMA : 14- 63: lakvi KVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREA rrlr RS33_YEAST : 14- 63: lakvi KVLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREA rrlr D 4: 178.6220 6( 6) V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R Occurences: 6(6) RS28_ARATH : 13- 61: avvvk VMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREAR rlr RS28_HUMAN : 17- 66: arvtk VLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREAR rlr RS28_MAIZE : 13- 62: avvvk VMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREAR rlr RS33_KLULA : 15- 64: akvik VLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREAR rlr RS33_KLUMA : 15- 64: akvik VLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREAR rlr RS33_YEAST : 15- 64: akvik VLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREAR rlr E 5: 175.0551 6( 6) T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 17- 64: kvmgr TGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 21- 69: kvlgr TGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 17- 65: kvmgr TGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 19- 67: kvlgr TGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 19- 67: kvlgr TGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 19- 67: kvlgr TGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR F 6: 174.4520 6( 6) V-x-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R Occurences: 6(6) RS28_ARATH : 10- 58: ikhav VvKVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESER earrl RS28_HUMAN : 14- 63: iklar VtKVLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESER earrl RS28_MAIZE : 10- 59: vklav VvKVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESER earrl RS33_KLULA : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_KLUMA : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_YEAST : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESER earrl G 7: 173.9520 8( 6) V-x(0,1)-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R Occurences: 8(6) RS28_ARATH : 10- 58: ikhav VvKVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESER earrl RS28_ARATH : 11- 58: khavv V-KVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESER earrl RS28_HUMAN : 14- 63: iklar VtKVLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESER earrl RS28_MAIZE : 10- 59: vklav VvKVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESER earrl RS28_MAIZE : 11- 59: klavv V-KVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESER earrl RS33_KLULA : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_KLUMA : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_YEAST : 12- 61: vtlak ViKVLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESER earrl H 8: 173.9520 7( 6) V-x(1,2)-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R Occurences: 7(6) RS28_ARATH : 9- 58: qikha VvvKVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESER earrl RS28_ARATH : 10- 58: ikhav Vv-KVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESER earrl RS28_HUMAN : 14- 63: iklar Vt-KVLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESER earrl RS28_MAIZE : 10- 59: vklav Vv-KVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESER earrl RS33_KLULA : 12- 61: vtlak Vi-KVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_KLUMA : 12- 61: vtlak Vi-KVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESER earrl RS33_YEAST : 12- 61: vtlak Vi-KVLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESER earrl I 9: 170.8851 6( 6) G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 18- 64: vmgrt GSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 22- 69: vlgrt GSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 18- 65: vmgrt GSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 20- 67: vlgrt GSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 20- 67: vlgrt GSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 20- 67: vlgrt GSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR J 10: 170.2820 6( 6) A-x-V-x-K-V-[LM]-G-R-T-G-S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S Occurences: 6(6) RS28_ARATH : 8- 56: sqikh AvVvKVMGRTGSRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLES erear RS28_HUMAN : 12- 61: qpikl ArVtKVLGRTGSQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLES erear RS28_MAIZE : 8- 57: tqvkl AvVvKVMGRTGSRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLES erear RS33_KLULA : 10- 59: tpvtl AkViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMES erear RS33_KLUMA : 10- 59: tpvtl AkViKVLGRTGSRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMES erear RS33_YEAST : 10- 59: tpvtl AkViKVLGRTGSRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMES erear K 11: 166.7150 6( 6) S-[QR]-G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 19- 64: mgrtg SRGQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 23- 69: lgrtg SQGQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 19- 65: mgrtg SRGQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 21- 67: lgrtg SRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 21- 67: lgrtg SRGGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 21- 67: lgrtg SRGGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR L 12: 159.3741 6( 6) G-[GQ]-[CV]-T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 21- 64: rtgsr GQVTQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 25- 69: rtgsq GQCTQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 21- 65: rtgsr GQVTQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 23- 67: rtgsr GGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 23- 67: rtgsr GGVTQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 23- 67: rtgsr GGVTQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR M 13: 148.6728 6( 6) T-Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 24- 64: srgqv TQVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 28- 69: sqgqc TQVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 24- 65: srgqv TQVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 26- 67: srggv TQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 26- 67: srggv TQVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 26- 67: srggv TQVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR N 14: 144.5028 6( 6) Q-V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 25- 64: rgqvt QVRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 29- 69: qgqct QVRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 25- 65: rgqvt QVRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 27- 67: rggvt QVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 27- 67: rggvt QVRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 27- 67: rggvt QVRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR O 15: 140.3327 6( 6) V-R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 26- 64: gqvtq VRVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 30- 69: gqctq VRVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 26- 65: gqvtq VRVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 28- 67: ggvtq VRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 28- 67: ggvtq VRVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 28- 67: ggvtq VRVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR P 16: 136.1627 6( 6) R-V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 27- 64: qvtqv RVKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 31- 69: qctqv RVEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 27- 65: qvtqv RVKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 29- 67: gvtqv RVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 29- 67: gvtqv RVEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 29- 67: gvtqv RVEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR Q 17: 131.9927 6( 6) V-[EK]-F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 28- 64: vtqvr VKFt-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 32- 69: ctqvr VEFmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 28- 65: vtqvr VKFldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 30- 67: vtqvr VEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 30- 67: vtqvr VEFleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 30- 67: vtqvr VEFleDTSRtIVRNVKGPVrENDILVLMESEREARRLR R 18: 124.6113 6( 6) F-x(1,2)-D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 30- 64: qvrvk Ft-DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 34- 69: qvrve FmdDTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 30- 65: qvrvk FldDQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 32- 67: qvrve FleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 32- 67: qvrve FleDTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 32- 67: qvrve FleDTSRtIVRNVKGPVrENDILVLMESEREARRLR S 19: 120.9412 6( 6) D-[QST]-[DNST]-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 6(6) RS28_ARATH : 32- 64: rvkft DSDRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 37- 69: vefmd DTSRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 33- 65: vkfld DQNRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 35- 67: vefle DTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 35- 67: vefle DTTRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 35- 67: vefle DTSRtIVRNVKGPVrENDILVLMESEREARRLR T 20: 115.1141 7( 6) D-x(0,2)-R-x-I-[IMV]-R-N-V-K-G-P-V-x-E-[GN]-D-[IV]-L-[TV]-L-[LM]-E-S-E-R-E-A-R-R-L-R Occurences: 7(6) RS28_ARATH : 32- 64: rvkft DsdRfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_ARATH : 34- 64: kftds D--RfIMRNVKGPVrEGDVLTLLESEREARRLR RS28_HUMAN : 37- 69: vefmd DtsRsIIRNVKGPVrEGDVLTLLESEREARRLR RS28_MAIZE : 33- 65: vkfld DqnRlIMRNVKGPVcEGDILTLLESEREARRLR RS33_KLULA : 35- 67: vefle DttRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_KLUMA : 35- 67: vefle DttRtIVRNVKGPVrEGDILVLMESEREARRLR RS33_YEAST : 35- 67: vefle DtsRtIVRNVKGPVrENDILVLMESEREARRLR Number of patterns evaluated by Pratt:3442 Total running time: 1 seconds