------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file RIBOSOMAL_S24E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S24E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS19_XENLA 132 RS24_HALMA 102 RS24_HUMAN 133 RS24_RHIRA 148 RS24_YEAST 134 Pratt run started at Thu Feb 6 21:06:12 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 5( 5) T-x-F-G-x(2)-K-x(2)-G-x(4)-Y 2: 24.0203 5( 5) N-x(2)-L-x-R-x(2,3)-V-x(2,3)-V-x-H 3: 23.5203 5( 5) T-x(4)-K-x(3)-N-x(4)-R-x(1,3)-V-x(1,2)-D 4: 20.8503 5( 5) F-G-x(2)-K-x(2)-G-x(4)-Y 5: 20.8503 5( 5) R-x(3)-V-x-D-x(3)-P-x(4)-V 6: 19.8503 5( 5) L-x-R-x(0,1)-K-x(1,2)-V-x-D 7: 19.8503 5( 5) L-x-R-x(2,3)-V-x(2,3)-V-x-H 8: 19.3503 5( 5) V-x-D-x(1,3)-P-x(2)-A-x(1,2)-V 9: 19.3503 5( 5) K-x(3)-N-x(4)-R-x(1,3)-V-x(1,2)-D 10: 19.3503 5( 5) R-x(1,3)-V-x(1,2)-D-x(3)-P-x(4)-V 11: 18.8503 5( 5) K-x(0,2)-V-x-D-x(1,3)-P-x(2)-A 12: 18.8503 5( 5) V-x(3,5)-K-x(3)-N-x(4)-R-x(1,3)-V 13: 16.6802 5( 5) G-x(2)-K-x(2)-G-x(4)-Y 14: 16.6802 5( 5) K-x(4)-K-x(2)-G-x(2)-K 15: 16.6802 5( 5) V-x-D-x(3)-P-x(4)-V 16: 16.1802 6( 5) R-x(2)-L-A-x(3,4)-K 17: 16.1802 6( 5) V-x(1,2)-D-x(3)-P-x(4)-V 18: 15.6802 5( 5) R-x(0,1)-K-x(1,2)-V-x-D 19: 15.6802 5( 5) A-x-V-x(3,4)-E-x(1,2)-R 20: 15.6802 5( 5) K-x(3)-R-x(0,1)-K-x(3,4)-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 94.7274 5( 5) T-x-F-G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] B 2: 90.5574 5( 5) F-G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] C 3: 86.3873 5( 5) G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] D 4: 84.4827 5( 5) N-x-[LM]-L-x-R-x(2,3)-V-x(2,3)-V-[ILV]-H-[DP]-[EGN]-x-[AT]-[NPT]-[SV]-x(2)-[DST]-x(2)-[DR]-[ES]-x-[AIL]-[AG]-x-[LMV]-x-K-[ADT]-[ADET]-x-[DE]-[AV]-[IV]-x(3)-[GL] E 5: 76.7457 5( 5) L-x-R-x(2,3)-V-x(2,3)-V-[ILV]-H-[DP]-[EGN]-x-[AT]-[NPT]-[SV]-x(2)-[DST]-x(2)-[DR]-[ES]-x-[AIL]-[AG]-x-[LMV]-x-K-[ADT]-[ADET]-x-[DE]-[AV]-[IV]-x(3)-[GL] F 6: 70.8987 5( 5) T-[IV]-x(3)-K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x(1,2)-D-x-[ILM]-x-[EP]-x(4)-V-[APS]-[DK]-[DGT]-E-x-[ER]-[AES]-[EK]-x-[AG] G 7: 65.9246 5( 5) R-x-[EQ]-[FMV]-V-x-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] H 8: 63.5038 5( 5) K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x(1,2)-D-x-[ILM]-x-[EP]-x(4)-V-[APS]-[DK]-[DGT]-E-x-[ER]-[AES]-[EK]-x-[AG] I 9: 62.1000 5( 5) V-x(3,5)-K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x-[DQ]-[DV]-x(2)-[LP]-[EGN]-x-[AN]-x-[IV]-x(2)-[DT]-[EG]-x-[ER]-[ES]-x(2)-[AEG] J 10: 61.7686 5( 5) V-x-D-x(1,3)-P-[EGN]-x-A-x(1,2)-V-[EPS]-x-[DT]-[EH]-[ILM]-x-[ES]-[KR]-x(3)-[MV]-x-[DK]-[AGT]-[DET]-x-[DE]-[AV]-x(2)-[AV] K 11: 58.4524 5( 5) R-x(1,3)-V-x(1,2)-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] L 12: 56.2684 5( 5) K-x(0,2)-V-x-D-x(1,3)-P-[EGN]-x-A-x-[DV]-x-[EK]-[DQT]-[DE]-x(3)-[EK]-x-[AGN]-[EK]-[IMV]-x(2)-[ADT]-[DEGT]-x-[DE]-x-[AIV] M 13: 55.7823 5( 5) V-x-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] N 14: 55.2823 6( 5) V-x(1,2)-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] O 15: 50.1725 5( 5) A-x-V-x(3,4)-E-x(1,2)-R-[DES]-x(2)-[AGQ]-[DEK]-x(3)-[AET]-x(2)-[DEK]-[AIV]-[IV]-x-[DV]-x-[EG]-x-[EKR]-[AT]-x(2)-[AG] P 16: 43.2856 5( 5) L-[AEQ]-R-x(0,1)-K-x(1,2)-V-[AIV]-D-[GV]-x-[EH]-[EP]-[AGN]-x-[AE]-[ANT] Q 17: 36.4414 5( 5) R-x(0,1)-K-x(1,2)-V-[AIV]-D-[GV]-x-[EH]-[EP]-[AGN]-x-[AE]-[ANT] R 18: 30.2407 5( 5) K-x-[EG]-[ILM]-R-x(0,1)-K-x(3,4)-Y-x(4)-[DE]-[ANV]-[IPV] S 19: 23.4172 5( 5) N-x-[LM]-L-x-R-x(2,3)-V-x(2,3)-V T 20: 23.2438 5( 5) R-x(2)-L-A-x(3,4)-K-[ADGT]-[AEGT]-x-[DEK] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 94.7274 5( 5) T-x-F-G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] Occurences: 5(5) RS19_XENLA : 62- 106: vfgfr ThFGggKTTGFGmIYDSLDyAKknEPkHrLaKhgLyEkkKtSrKQ rkerk RS24_HALMA : 57- 101: ihkld TkFGmrKTVGYAkVYDNPEyARdvEQdHmLeRnkIvAdgEeEaEE a RS24_HUMAN : 62- 106: vfgfr ThFGggKTTGFGmIYDSLDyAKknEPkHrLaRhgLyEkkKtSrKQ rkerk RS24_RHIRA : 81- 125: vfgfk ThFGggKTTGFAlIYDNVEaLKnfEPkHrLvRigLaEapKgGrKQ rkekk RS24_YEAST : 61- 105: vfgfr TqFGggKSVGFGlVYNSVAeAKkfEPtYrLvRygLaEkvEkAsRQ qrkqk B 2: 90.5574 5( 5) F-G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] Occurences: 5(5) RS19_XENLA : 64- 106: gfrth FGggKTTGFGmIYDSLDyAKknEPkHrLaKhgLyEkkKtSrKQ rkerk RS24_HALMA : 59- 101: kldtk FGmrKTVGYAkVYDNPEyARdvEQdHmLeRnkIvAdgEeEaEE a RS24_HUMAN : 64- 106: gfrth FGggKTTGFGmIYDSLDyAKknEPkHrLaRhgLyEkkKtSrKQ rkerk RS24_RHIRA : 83- 125: gfkth FGggKTTGFAlIYDNVEaLKnfEPkHrLvRigLaEapKgGrKQ rkekk RS24_YEAST : 63- 105: gfrtq FGggKSVGFGlVYNSVAeAKkfEPtYrLvRygLaEkvEkAsRQ qrkqk C 3: 86.3873 5( 5) G-x(2)-K-[ST]-[TV]-G-[FY]-[AG]-x-[IV]-Y-[DN]-[NS]-[LPV]-[ADE]-x-[AL]-[KR]-x(2)-E-[PQ]-x-[HY]-x-L-x-[KR]-x(2)-[IL]-x-[AE]-x(2)-[EK]-x-[AEGS]-x-[EKR]-[EQ] Occurences: 5(5) RS19_XENLA : 65- 106: frthf GggKTTGFGmIYDSLDyAKknEPkHrLaKhgLyEkkKtSrKQ rkerk RS24_HALMA : 60- 101: ldtkf GmrKTVGYAkVYDNPEyARdvEQdHmLeRnkIvAdgEeEaEE a RS24_HUMAN : 65- 106: frthf GggKTTGFGmIYDSLDyAKknEPkHrLaRhgLyEkkKtSrKQ rkerk RS24_RHIRA : 84- 125: fkthf GggKTTGFAlIYDNVEaLKnfEPkHrLvRigLaEapKgGrKQ rkekk RS24_YEAST : 64- 105: frtqf GggKSVGFGlVYNSVAeAKkfEPtYrLvRygLaEkvEkAsRQ qrkqk D 4: 84.4827 5( 5) N-x-[LM]-L-x-R-x(2,3)-V-x(2,3)-V-[ILV]-H-[DP]-[EGN]-x-[AT]-[NPT]-[SV]-x(2)-[DST]-x(2)-[DR]-[ES]-x-[AIL]-[AG]-x-[LMV]-x-K-[ADT]-[ADET]-x-[DE]-[AV]-[IV]-x(3)-[GL] Occurences: 5(5) RS19_XENLA : 15- 59: rkfmt NrLLqRkqmVid-VLHPGkATVpkTeiREkLAkMyKTTpDVIfvfG frthf RS24_HALMA : 11- 55: ieede NpMLhRtd-VrfeVVHDEaTPSrlSvrDSlAAtLnKDAeEVVihkL dtkfg RS24_HUMAN : 15- 59: rkfmt NrLLqRkqmVid-VLHPGkATVpkTeiREkLAkMyKTTpDVIfvfG frthf RS24_RHIRA : 34- 78: rkflt NrLLqRkqmVvd-VIHPGlANVskDelRSkIGkMyKADkEVVsvfG fkthf RS24_YEAST : 14- 58: rkvis NpLLaRkqfVvd-VLHPNrANVskDelREkLAeVyKAEkDAVsvfG frtqf E 5: 76.7457 5( 5) L-x-R-x(2,3)-V-x(2,3)-V-[ILV]-H-[DP]-[EGN]-x-[AT]-[NPT]-[SV]-x(2)-[DST]-x(2)-[DR]-[ES]-x-[AIL]-[AG]-x-[LMV]-x-K-[ADT]-[ADET]-x-[DE]-[AV]-[IV]-x(3)-[GL] Occurences: 5(5) RS19_XENLA : 18- 59: mtnrl LqRkqmVid-VLHPGkATVpkTeiREkLAkMyKTTpDVIfvfG frthf RS24_HALMA : 14- 55: denpm LhRtd-VrfeVVHDEaTPSrlSvrDSlAAtLnKDAeEVVihkL dtkfg RS24_HUMAN : 18- 59: mtnrl LqRkqmVid-VLHPGkATVpkTeiREkLAkMyKTTpDVIfvfG frthf RS24_RHIRA : 37- 78: ltnrl LqRkqmVvd-VIHPGlANVskDelRSkIGkMyKADkEVVsvfG fkthf RS24_YEAST : 17- 58: isnpl LaRkqfVvd-VLHPNrANVskDelREkLAeVyKAEkDAVsvfG frtqf F 6: 70.8987 5( 5) T-[IV]-x(3)-K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x(1,2)-D-x-[ILM]-x-[EP]-x(4)-V-[APS]-[DK]-[DGT]-E-x-[ER]-[AES]-[EK]-x-[AG] Occurences: 5(5) RS19_XENLA : 6- 45: mndtv TIrtrKFmTNrllQRkqmVi-DvLhPgkatVPKTEiREKlA kmykt RS24_HALMA : 64- 102: fgmrk TVgyaKVyDNpeyARd--VeqDhMlErnkiVADGEeEAEeA RS24_HUMAN : 6- 45: mndtv TIrtrKFmTNrllQRkqmVi-DvLhPgkatVPKTEiREKlA kmykt RS24_RHIRA : 25- 64: adaav TIrtrKFlTNrllQRkqmVv-DvIhPglanVSKDElRSKiG kmyka RS24_YEAST : 5- 44: sdav TIrtrKViSNpllARkqfVv-DvLhPnranVSKDElREKlA evyka G 7: 65.9246 5( 5) R-x-[EQ]-[FMV]-V-x-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] Occurences: 5(5) RS19_XENLA : 20- 57: nrllq RkQMViDvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_HALMA : 20- 57: hrtdv RfEVVhDeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HUMAN : 20- 57: nrllq RkQMViDvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_RHIRA : 39- 76: nrllq RkQMVvDvIhPGlANVsKDeLrSkigKmyKAdkEvVsV fgfkt RS24_YEAST : 19- 56: nplla RkQFVvDvLhPNrANVsKDeLrEklaEvyKAekDaVsV fgfrt H 8: 63.5038 5( 5) K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x(1,2)-D-x-[ILM]-x-[EP]-x(4)-V-[APS]-[DK]-[DGT]-E-x-[ER]-[AES]-[EK]-x-[AG] Occurences: 5(5) RS19_XENLA : 11- 45: tirtr KFmTNrllQRkqmVi-DvLhPgkatVPKTEiREKlA kmykt RS24_HALMA : 69- 102: tvgya KVyDNpeyARd--VeqDhMlErnkiVADGEeEAEeA RS24_HUMAN : 11- 45: tirtr KFmTNrllQRkqmVi-DvLhPgkatVPKTEiREKlA kmykt RS24_RHIRA : 30- 64: tirtr KFlTNrllQRkqmVv-DvIhPglanVSKDElRSKiG kmyka RS24_YEAST : 10- 44: tirtr KViSNpllARkqfVv-DvLhPnranVSKDElREKlA evyka I 9: 62.1000 5( 5) V-x(3,5)-K-[FV]-x-[DST]-N-x(3)-[AQ]-R-x(1,3)-V-x-[DQ]-[DV]-x(2)-[LP]-[EGN]-x-[AN]-x-[IV]-x(2)-[DT]-[EG]-x-[ER]-[ES]-x(2)-[AEG] Occurences: 5(5) RS19_XENLA : 5- 45: mndt VtirtrKFmTNrllQRkqmViDVlhPGkAtVpkTEiREklA kmykt RS24_HALMA : 65- 101: gmrkt Vgya--KVyDNpeyARd--VeQDhmLErNkIvaDGeEEaeE a RS24_HUMAN : 5- 45: mndt VtirtrKFmTNrllQRkqmViDVlhPGkAtVpkTEiREklA kmykt RS24_RHIRA : 24- 64: radaa VtirtrKFlTNrllQRkqmVvDVihPGlAnVskDElRSkiG kmyka RS24_YEAST : 4- 44: sda VtirtrKViSNpllARkqfVvDVlhPNrAnVskDElREklA evyka J 10: 61.7686 5( 5) V-x-D-x(1,3)-P-[EGN]-x-A-x(1,2)-V-[EPS]-x-[DT]-[EH]-[ILM]-x-[ES]-[KR]-x(3)-[MV]-x-[DK]-[AGT]-[DET]-x-[DE]-[AV]-x(2)-[AV] Occurences: 5(5) RS19_XENLA : 24- 57: qrkqm ViDvlhPGkAt-VPkTEIrEKlakMyKTTpDVifV fgfrt RS24_HALMA : 70- 102: vgyak VyDn--PEyArdVEqDHMlERnkiVaDGEeEAeeA RS24_HUMAN : 24- 57: qrkqm ViDvlhPGkAt-VPkTEIrEKlakMyKTTpDVifV fgfrt RS24_RHIRA : 43- 76: qrkqm VvDvihPGlAn-VSkDELrSKigkMyKADkEVvsV fgfkt RS24_YEAST : 23- 56: arkqf VvDvlhPNrAn-VSkDELrEKlaeVyKAEkDAvsV fgfrt K 11: 58.4524 5( 5) R-x(1,3)-V-x(1,2)-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] Occurences: 5(5) RS19_XENLA : 20- 57: nrllq RkqmVi-DvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_HALMA : 20- 57: hrtdv RfevVh-DeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HALMA : 20- 57: hrtdv Rfe-VvhDeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HUMAN : 20- 57: nrllq RkqmVi-DvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_RHIRA : 39- 76: nrllq RkqmVv-DvIhPGlANVsKDeLrSkigKmyKAdkEvVsV fgfkt RS24_YEAST : 19- 56: nplla RkqfVv-DvLhPNrANVsKDeLrEklaEvyKAekDaVsV fgfrt L 12: 56.2684 5( 5) K-x(0,2)-V-x-D-x(1,3)-P-[EGN]-x-A-x-[DV]-x-[EK]-[DQT]-[DE]-x(3)-[EK]-x-[AGN]-[EK]-[IMV]-x(2)-[ADT]-[DEGT]-x-[DE]-x-[AIV] Occurences: 5(5) RS19_XENLA : 21- 55: rllqr KqmViDvlhPGkAtVpKTEireKlAKMykTTpDvI fvfgf RS24_HALMA : 69- 99: tvgya K--VyDn--PEyArDvEQDhmlErNKIvaDGeEeA eea RS24_HUMAN : 21- 55: rllqr KqmViDvlhPGkAtVpKTEireKlAKMykTTpDvI fvfgf RS24_RHIRA : 40- 74: rllqr KqmVvDvihPGlAnVsKDElrsKiGKMykADkEvV svfgf RS24_YEAST : 20- 54: pllar KqfVvDvlhPNrAnVsKDElreKlAEVykAEkDaV svfgf M 13: 55.7823 5( 5) V-x-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] Occurences: 5(5) RS19_XENLA : 24- 57: qrkqm ViDvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_HALMA : 24- 57: vrfev VhDeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HUMAN : 24- 57: qrkqm ViDvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_RHIRA : 43- 76: qrkqm VvDvIhPGlANVsKDeLrSkigKmyKAdkEvVsV fgfkt RS24_YEAST : 23- 56: arkqf VvDvLhPNrANVsKDeLrEklaEvyKAekDaVsV fgfrt N 14: 55.2823 6( 5) V-x(1,2)-D-x-[AIL]-x-P-[GNS]-x-[AL]-[NST]-V-x-[DK]-[DST]-x-[AIL]-x-[EST]-x(3)-[DEK]-x(2)-[EK]-[ATV]-x(2)-[DEH]-x-[ILV]-x-[TV] Occurences: 6(5) RS19_XENLA : 24- 57: qrkqm Vi-DvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_HALMA : 23- 57: dvrfe VvhDeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HALMA : 24- 57: vrfev Vh-DeAtPSrLSVrDSlAaTlnkDaeEVviHkLdT kfgmr RS24_HUMAN : 24- 57: qrkqm Vi-DvLhPGkATVpKTeIrEklaKmyKTtpDvIfV fgfrt RS24_RHIRA : 43- 76: qrkqm Vv-DvIhPGlANVsKDeLrSkigKmyKAdkEvVsV fgfkt RS24_YEAST : 23- 56: arkqf Vv-DvLhPNrANVsKDeLrEklaEvyKAekDaVsV fgfrt O 15: 50.1725 5( 5) A-x-V-x(3,4)-E-x(1,2)-R-[DES]-x(2)-[AGQ]-[DEK]-x(3)-[AET]-x(2)-[DEK]-[AIV]-[IV]-x-[DV]-x-[EG]-x-[EKR]-[AT]-x(2)-[AG] Occurences: 5(5) RS19_XENLA : 33- 65: lhpgk AtVpkt-Ei-REklAKmykTtpDVIfVfGfRThfG ggktt RS24_HALMA : 68- 102: ktvgy AkVydnpEyaRDveQDhmlErnKIVaDgEeEAeeA RS24_HUMAN : 33- 65: lhpgk AtVpkt-Ei-REklAKmykTtpDVIfVfGfRThfG ggktt RS24_RHIRA : 52- 84: ihpgl AnVskd-El-RSkiGKmykAdkEVVsVfGfKThfG ggktt RS24_YEAST : 32- 64: lhpnr AnVskd-El-REklAEvykAekDAVsVfGfRTqfG ggksv P 16: 43.2856 5( 5) L-[AEQ]-R-x(0,1)-K-x(1,2)-V-[AIV]-D-[GV]-x-[EH]-[EP]-[AGN]-x-[AE]-[ANT] Occurences: 5(5) RS19_XENLA : 18- 34: mtnrl LQR-KqmVIDVlHPGkAT vpkte RS24_HALMA : 86- 102: eqdhm LERnKi-VADGeEEAeEA RS24_HUMAN : 18- 34: mtnrl LQR-KqmVIDVlHPGkAT vpkte RS24_RHIRA : 37- 53: ltnrl LQR-KqmVVDViHPGlAN vskde RS24_YEAST : 17- 33: isnpl LAR-KqfVVDVlHPNrAN vskde Q 17: 36.4414 5( 5) R-x(0,1)-K-x(1,2)-V-[AIV]-D-[GV]-x-[EH]-[EP]-[AGN]-x-[AE]-[ANT] Occurences: 5(5) RS19_XENLA : 20- 34: nrllq R-KqmVIDVlHPGkAT vpkte RS24_HALMA : 88- 102: dhmle RnKi-VADGeEEAeEA RS24_HUMAN : 20- 34: nrllq R-KqmVIDVlHPGkAT vpkte RS24_RHIRA : 39- 53: nrllq R-KqmVVDViHPGlAN vskde RS24_YEAST : 19- 33: nplla R-KqfVVDVlHPNrAN vskde R 18: 30.2407 5( 5) K-x-[EG]-[ILM]-R-x(0,1)-K-x(3,4)-Y-x(4)-[DE]-[ANV]-[IPV] Occurences: 5(5) RS19_XENLA : 37- 55: katvp KtEIReKlakmYkttpDVI fvfgf RS24_HALMA : 58- 74: hkldt KfGMR-Ktvg-YakvyDNP eyard RS24_HUMAN : 37- 55: katvp KtEIReKlakmYkttpDVI fvfgf RS24_RHIRA : 56- 74: lanvs KdELRsKigkmYkadkEVV svfgf RS24_YEAST : 36- 54: ranvs KdELReKlaevYkaekDAV svfgf S 19: 23.4172 5( 5) N-x-[LM]-L-x-R-x(2,3)-V-x(2,3)-V Occurences: 5(5) RS19_XENLA : 15- 27: rkfmt NrLLqRkqmVid-V lhpgk RS24_HALMA : 11- 23: ieede NpMLhRtd-VrfeV vhdea RS24_HUMAN : 15- 27: rkfmt NrLLqRkqmVid-V lhpgk RS24_RHIRA : 34- 46: rkflt NrLLqRkqmVvd-V ihpgl RS24_YEAST : 14- 26: rkvis NpLLaRkqfVvd-V lhpnr T 20: 23.2438 5( 5) R-x(2)-L-A-x(3,4)-K-[ADGT]-[AEGT]-x-[DEK] Occurences: 5(5) RS19_XENLA : 41- 53: pktei RekLAkmy-KTTpD vifvf RS24_HALMA : 36- 49: srlsv RdsLAatlnKDAeE vvihk RS24_HUMAN : 41- 53: pktei RekLAkmy-KTTpD vifvf RS24_RHIRA : 112- 124: khrlv RigLAeap-KGGrK qrkek RS24_YEAST : 40- 52: skdel RekLAevy-KAEkD avsvf Number of patterns evaluated by Pratt:982 Total running time: 1 seconds