------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file RIBOSOMAL_S21E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S21E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS21_HUMAN 83 RS21_ORYSA 82 RS21_RAT 83 RS21_SCHPO 87 RS21_YEAST 87 Pratt run started at Thu Feb 6 21:06:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 115.7614 5( 5) N-x(2)-G-x(2)-V-x-L-Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T 2: 115.7614 5( 5) M-x-N-x(2)-G-x(2)-V-x-L-Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G 3: 111.5914 5( 5) L-Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R 4: 111.5914 5( 5) V-x-L-Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G 5: 111.5914 5( 5) G-x(2)-V-x-L-Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T 6: 107.4213 5( 5) Y-V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R 7: 103.2513 5( 5) P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G 8: 103.2513 5( 5) V-P-R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R 9: 99.0812 5( 5) R-K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G 10: 94.9112 5( 5) C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D 11: 94.9112 5( 5) K-C-S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G 12: 90.7411 5( 5) S-A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D 13: 86.5711 5( 5) A-x-N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D 14: 82.4010 5( 5) I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R-L 15: 82.4010 5( 5) R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R 16: 82.4010 5( 5) N-R-I-I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D 17: 78.2310 5( 5) I-x-A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R-L 18: 74.0609 5( 5) A-x-D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R-L 19: 69.8909 5( 5) D-H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R-L 20: 65.7208 5( 5) H-A-S-x-Q-x-N-x(3)-V-D-x(2,3)-G-x(3,4)-G-x(3)-T-x(4)-G-x(2)-R-x(2)-G-x(2)-D-x(4)-R-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 153.2609 5( 5) M-[EQ]-N-[DE]-x-G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR] B 2: 150.0789 5( 5) N-[DE]-x-G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T C 3: 149.6352 5( 5) L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R D 4: 149.5809 5( 5) V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G E 5: 149.0929 5( 5) G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG] F 6: 145.4651 5( 5) Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R G 7: 141.2951 5( 5) P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G H 8: 141.2951 5( 5) V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R I 9: 139.3047 5( 5) C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D J 10: 137.1250 5( 5) R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G K 11: 136.1256 5( 5) K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE] L 12: 135.9742 5( 5) G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G M 13: 135.1347 5( 5) S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D N 14: 134.1623 5( 5) A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS] O 15: 132.7323 5( 5) N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL] P 16: 132.7323 5( 5) R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R Q 17: 132.7323 5( 5) I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L R 18: 128.5622 5( 5) I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L S 19: 125.7451 5( 5) V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G T 20: 124.3922 5( 5) A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 153.2609 5( 5) M-[EQ]-N-[DE]-x-G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR] Occurences: 5(5) RS21_HUMAN : 1- 49: MQNDaGEFVDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQ fktya RS21_ORYSA : 1- 48: MQNEeGQMVDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GR fttfa RS21_RAT : 1- 49: MQNDaGEFVDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQ fktyg RS21_SCHPO : 1- 49: MENEaGQLVDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGE kttya RS21_YEAST : 1- 49: MENDkGQLVELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGE yvtya B 2: 150.0789 5( 5) N-[DE]-x-G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T Occurences: 5(5) RS21_HUMAN : 3- 52: mq NDaGEFVDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkT yaicg RS21_ORYSA : 3- 51: mq NEeGQMVDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftT falsg RS21_RAT : 3- 52: mq NDaGEFVDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkT ygicg RS21_SCHPO : 3- 52: me NEaGQLVDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktT yaisg RS21_YEAST : 3- 52: me NDkGQLVELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvT yalsg C 3: 149.6352 5( 5) L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R Occurences: 5(5) RS21_HUMAN : 11- 60: gefvd LYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIR rmges RS21_ORYSA : 11- 59: gqmvd LYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIR aqgda RS21_RAT : 11- 60: gefvd LYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIR rmges RS21_SCHPO : 11- 60: gqlvd LYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVR skges RS21_YEAST : 11- 60: gqlve LYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVR srges D 4: 149.5809 5( 5) V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G Occurences: 5(5) RS21_HUMAN : 9- 57: dagef VDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICG airrm RS21_ORYSA : 9- 56: eegqm VDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSG firaq RS21_RAT : 9- 57: dagef VDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICG airrm RS21_SCHPO : 9- 57: eagql VDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISG fvrsk RS21_YEAST : 9- 57: dkgql VELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSG yvrsr E 5: 149.0929 5( 5) G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG] Occurences: 5(5) RS21_HUMAN : 6- 54: mqnda GEFVDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYA icgai RS21_ORYSA : 6- 53: mqnee GQMVDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFA lsgfi RS21_RAT : 6- 54: mqnda GEFVDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYG icgai RS21_SCHPO : 6- 54: menea GQLVDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYA isgfv RS21_YEAST : 6- 54: mendk GQLVELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYA lsgyv F 6: 145.4651 5( 5) Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R Occurences: 5(5) RS21_HUMAN : 12- 60: efvdl YVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIR rmges RS21_ORYSA : 12- 59: qmvdl YVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIR aqgda RS21_RAT : 12- 60: efvdl YVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIR rmges RS21_SCHPO : 12- 60: qlvdl YVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVR skges RS21_YEAST : 12- 60: qlvel YVPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVR srges G 7: 141.2951 5( 5) P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G Occurences: 5(5) RS21_HUMAN : 14- 63: vdlyv PRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmG esdds RS21_ORYSA : 14- 62: vdlyv PRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqG dadsa RS21_RAT : 14- 63: vdlyv PRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmG esdds RS21_SCHPO : 14- 63: vdlyv PRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskG esddd RS21_YEAST : 14- 63: velyv PRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrG esdds H 8: 141.2951 5( 5) V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R Occurences: 5(5) RS21_HUMAN : 13- 60: fvdly VPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIR rmges RS21_ORYSA : 13- 59: mvdly VPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIR aqgda RS21_RAT : 13- 60: fvdly VPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIR rmges RS21_SCHPO : 13- 60: lvdly VPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVR skges RS21_YEAST : 13- 60: lvely VPRKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVR srges I 9: 139.3047 5( 5) C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D Occurences: 5(5) RS21_HUMAN : 17- 66: yvprk CSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESD dsilr RS21_ORYSA : 17- 65: yvprk CSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDAD saldr RS21_RAT : 17- 66: yvprk CSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESD dsilr RS21_SCHPO : 17- 66: yvprk CSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESD ddinr RS21_YEAST : 17- 66: yvprk CSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESD dslnr J 10: 137.1250 5( 5) R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G Occurences: 5(5) RS21_HUMAN : 15- 63: dlyvp RKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmG esdds RS21_ORYSA : 15- 62: dlyvp RKCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqG dadsa RS21_RAT : 15- 63: dlyvp RKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmG esdds RS21_SCHPO : 15- 63: dlyvp RKCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskG esddd RS21_YEAST : 15- 63: elyvp RKCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrG esdds K 11: 136.1256 5( 5) K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE] Occurences: 5(5) RS21_HUMAN : 16- 64: lyvpr KCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGE sddsi RS21_ORYSA : 16- 63: lyvpr KCSATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGD adsal RS21_RAT : 16- 64: lyvpr KCSASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGE sddsi RS21_SCHPO : 16- 64: lyvpr KCSATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGE sdddi RS21_YEAST : 16- 64: lyvpr KCSATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGE sddsl L 12: 135.9742 5( 5) G-[EQ]-[FLM]-V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G Occurences: 5(5) RS21_HUMAN : 6- 48: mqnda GEFVDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-G qfkty RS21_ORYSA : 6- 47: mqnee GQMVDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-G rfttf RS21_RAT : 6- 48: mqnda GEFVDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-G qfkty RS21_SCHPO : 6- 48: menea GQLVDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipG ektty RS21_YEAST : 6- 48: mendk GQLVELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipG eyvty M 13: 135.1347 5( 5) S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D Occurences: 5(5) RS21_HUMAN : 18- 66: vprkc SASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESD dsilr RS21_ORYSA : 18- 65: vprkc SATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDAD saldr RS21_RAT : 18- 66: vprkc SASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESD dsilr RS21_SCHPO : 18- 66: vprkc SATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESD ddinr RS21_YEAST : 18- 66: vprkc SATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESD dslnr N 14: 134.1623 5( 5) A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS] Occurences: 5(5) RS21_HUMAN : 19- 67: prkcs ASNRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDD silrl RS21_ORYSA : 19- 66: prkcs ATNRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADS aldrl RS21_RAT : 19- 67: prkcs ASNRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDD silrl RS21_SCHPO : 19- 67: prkcs ATNRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDD dinrl RS21_YEAST : 19- 67: prkcs ATNRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDD slnrl O 15: 132.7323 5( 5) N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL] Occurences: 5(5) RS21_HUMAN : 21- 69: kcsas NRIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDDSI lrlak RS21_ORYSA : 21- 68: kcsat NRIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADSAL drlwq RS21_RAT : 21- 69: kcsas NRIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDDSI lrlak RS21_SCHPO : 21- 69: kcsat NRIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDDDI nrlqt RS21_YEAST : 21- 69: kcsat NRIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDDSL nrlaq P 16: 132.7323 5( 5) R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R Occurences: 5(5) RS21_HUMAN : 22- 71: csasn RIIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDDSIlR lakad RS21_ORYSA : 22- 70: csatn RIItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADSALdR lwqkr RS21_RAT : 22- 71: csasn RIIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDDSIlR lakad RS21_SCHPO : 22- 71: csatn RIIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDDDInR lqtqd RS21_YEAST : 22- 71: csatn RIIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDDSLnR laqnd Q 17: 132.7323 5( 5) I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L Occurences: 5(5) RS21_HUMAN : 23- 72: sasnr IIgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDDSIlRL akadg RS21_ORYSA : 23- 71: satnr IItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADSALdRL wqkrk RS21_RAT : 23- 72: sasnr IIaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDDSIlRL akadg RS21_SCHPO : 23- 72: satnr IIqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDDDInRL qtqdg RS21_YEAST : 23- 72: satnr IIkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDDSLnRL aqndg R 18: 128.5622 5( 5) I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L Occurences: 5(5) RS21_HUMAN : 24- 72: asnri IgAKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDDSIlRL akadg RS21_ORYSA : 24- 71: atnri ItAKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADSALdRL wqkrk RS21_RAT : 24- 72: asnri IaAKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDDSIlRL akadg RS21_SCHPO : 24- 72: atnri IqAKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDDDInRL qtqdg RS21_YEAST : 24- 72: atnri IkADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDDSLnRL aqndg S 19: 125.7451 5( 5) V-[DE]-L-Y-V-P-R-K-C-S-A-[ST]-N-R-I-I-x-A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G Occurences: 5(5) RS21_HUMAN : 9- 48: dagef VDLYVPRKCSASNRIIgAKDHASIQMNVAeVDkvtGrfn-G qfkty RS21_ORYSA : 9- 47: eegqm VDLYVPRKCSATNRIItAKDHASVQINIGhVDen-Glyd-G rfttf RS21_RAT : 9- 48: dagef VDLYVPRKCSASNRIIaAKDHASIQMNVAeVDrstGrfn-G qfkty RS21_SCHPO : 9- 48: eagql VDLYVPRKCSATNRIIqAKDHASVQINVAaVDqe-GrqipG ektty RS21_YEAST : 9- 48: dkgql VELYVPRKCSATNRIIkADDHASVQINVAkVDee-GraipG eyvty T 20: 124.3922 5( 5) A-[DK]-D-H-A-S-[IV]-Q-[IM]-N-[IV]-[AG]-x-V-D-x(2,3)-G-x(3,4)-G-[EQR]-x(2)-T-[FY]-[AG]-[IL]-[CS]-G-x-[IV]-R-x(2)-G-[DE]-[AS]-D-[DS]-[ADS]-[IL]-x-R-L Occurences: 5(5) RS21_HUMAN : 26- 72: nriig AKDHASIQMNVAeVDkvtGrfn-GQfkTYAICGaIRrmGESDDSIlRL akadg RS21_ORYSA : 26- 71: nriit AKDHASVQINIGhVDen-Glyd-GRftTFALSGfIRaqGDADSALdRL wqkrk RS21_RAT : 26- 72: nriia AKDHASIQMNVAeVDrstGrfn-GQfkTYGICGaIRrmGESDDSIlRL akadg RS21_SCHPO : 26- 72: nriiq AKDHASVQINVAaVDqe-GrqipGEktTYAISGfVRskGESDDDInRL qtqdg RS21_YEAST : 26- 72: nriik ADDHASVQINVAkVDee-GraipGEyvTYALSGyVRsrGESDDSLnRL aqndg Number of patterns evaluated by Pratt:4406 Total running time: 1 seconds