------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file RIBOSOMAL_S19E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S19E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: R19A_YEAST 143 R19B_YEAST 143 R19E_ORYSA 146 R19G_ASCLU 148 R19S_ASCLU 150 RS12_HALMA 147 RS19_DROME 155 RS19_EMENI 148 RS19_HUMAN 144 RS19_RAT 144 Pratt run started at Thu Feb 6 21:06:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.1904 10( 10) G-R-x(5)-G-x(0,1)-R-x(1,2)-L-D-x(2)-A 2: 24.0203 10( 10) R-x(5)-G-x(0,1)-R-x(1,2)-L-D-x(2)-A 3: 24.0203 13( 10) G-x(1,2)-R-x(4,5)-G-x(3)-L-D-x(2)-A 4: 16.6802 10( 10) G-x(3)-L-D-x(2)-A 5: 16.6802 10( 10) R-x(2)-L-Q-x-L 6: 16.1802 11( 10) R-x(1,2)-L-D-x(2)-A 7: 15.6802 17( 10) G-x(0,1)-R-x(5)-G-x(0,1)-R 8: 15.1802 11( 10) S-x(0,1)-G-x(3,5)-R-x(3)-Q 9: 15.1802 11( 10) K-x(5)-E-x(1,2)-P-x(1,3)-D 10: 14.6802 10( 10) R-x-A-x(0,2)-A-x(2,4)-L 11: 12.5102 10( 10) L-D-x(2)-A 12: 12.5102 10( 10) L-Q-x-L 13: 12.5102 12( 10) V-x(4)-K-x(2)-G 14: 12.5102 10( 10) R-x(2)-Y-x(5)-G 15: 12.0102 11( 10) D-x-D-x(1,2)-A 16: 12.0102 14( 10) G-x(1,2)-R-x-L 17: 12.0102 16( 10) G-x(0,1)-R-x-L 18: 12.0102 12( 10) S-x(4)-R-x(1,2)-L 19: 12.0102 15( 10) G-x(0,1)-G-R 20: 12.0102 12( 10) K-x(4,5)-E-x(2)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 54.4339 10( 10) K-x(4,5)-E-[IL]-[APS]-P-x-[DGNQ]-x-[DNR]-x(4)-[NR]-[ACGT]-[AQ]-x(2)-[AL]-[DR]-[HKR]-[ILV]-x(2)-[DQR]-x(3)-[EG]-[DV]-[DEGN] B 2: 36.6179 10( 10) G-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L-D-[DQR]-x-A C 3: 35.8807 10( 10) R-x-[AIV]-L-Q-[AQST]-L-[EQ]-x(4)-[ILV]-[DEQ]-x(2)-[EPQ]-x(2)-[GN] D 4: 32.4479 10( 10) R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L-D-[DQR]-x-A E 5: 30.0074 10( 10) G-x(0,1)-G-R-x-[IL]-x(3)-[GT]-x(2)-D-L-x(3)-[AL] F 6: 29.7815 13( 10) G-x(1,2)-R-x(4,5)-G-[QR]-x(2)-L-D-[DQR]-x-A G 7: 29.0452 10( 10) L-Q-[AQST]-L-[EQ]-x(4)-[ILV]-[DEQ]-x(2)-[EPQ]-x(2)-[GN] H 8: 28.7867 17( 10) G-x(0,1)-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(3)-[DR]-x(3)-[GQST]-x(4)-[DENQT] I 9: 28.2517 10( 10) S-x(2)-[GIV]-x-R-x(1,2)-L-[DQ]-x-[IL]-[AEQ]-x(4)-[FILV]-x(3)-[DEPQ] J 10: 25.6875 10( 10) G-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L K 11: 22.4414 10( 10) G-[QR]-x(2)-L-D-[DQR]-x-A L 12: 21.5175 10( 10) R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L M 13: 21.0294 11( 10) S-x(0,1)-G-x(3,5)-R-x-[AIV]-x-Q-x-[LV] N 14: 18.7705 11( 10) R-x(1,2)-L-D-[DQR]-x-A O 15: 18.3190 10( 10) R-x(2)-Y-x(5)-G-[TV]-[DGT] P 16: 17.7736 11( 10) K-x-[AGS]-x(3)-E-x(1,2)-P-x(1,3)-D Q 17: 17.3240 10( 10) V-x(3)-[NQST]-K-x(2)-G-[GSV] R 18: 17.2167 15( 10) G-x(0,1)-R-x-L-x(3)-[AGT]-x(2)-[DTV] S 19: 16.8685 13( 10) G-x(1,2)-R-x-L-[DPST]-x(2)-[AGQ] T 20: 15.1005 10( 10) L-D-[DQR]-x-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 54.4339 10( 10) K-x(4,5)-E-[IL]-[APS]-P-x-[DGNQ]-x-[DNR]-x(4)-[NR]-[ACGT]-[AQ]-x(2)-[AL]-[DR]-[HKR]-[ILV]-x(2)-[DQR]-x(3)-[EG]-[DV]-[DEGN] Occurences: 10(10) R19A_YEAST : 109- 143: lqale Kigiv-EISPkGgRriseNGQrdLDRIaaQtleEDE R19B_YEAST : 109- 143: lqale Kigiv-EISPkGgRriseNGQrdLDRIaaQtleEDE R19E_ORYSA : 41- 76: wvdiv KtarfkELPPyDpDwyytRAAsiARKIylRqgiGVG gfqki R19G_ASCLU : 39- 74: wsdvt KmgiskELAPlNsDwyyvRTAsiARRLyvRsptGVD alrlv R19S_ASCLU : 39- 74: wsdlv KlgitkELAPvDsDwyyvRTAsvARRLyiRsptGVG alrrv RS12_HALMA : 29- 64: waeft KtgvdrELPPeQeDfwtrRAAslLRKVavDgpvGVN alrse RS19_DROME : 37- 72: qmdii KtakfkELAPyDpDwfyvRCAsiLRHLyhRspaGVG sitki RS19_EMENI : 38- 73: wvdtv KtsasnELPPqDaDwyyvRAAavARHIylRktvGVG rlrkv RS19_HUMAN : 37- 72: wvdtv KlakhkELAPyDeNwfytRAAstARHLylRggaGVG smtki RS19_RAT : 37- 72: wvdtv KlakhkELAPyDeNwfytRAAstARHLylRggaGVG smtki B 2: 36.6179 10( 10) G-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L-D-[DQR]-x-A Occurences: 10(10) R19A_YEAST : 120- 135: ispkg GRrISenGqRd-LDRiA aqtle R19B_YEAST : 120- 135: ispkg GRrISenGqRd-LDRiA aqtle R19E_ORYSA : 123- 138: vdpkg GRlITsqGrRd-LDQvA grvdv R19E_ORYSA : 123- 138: vdpkg GRlITsqG-RrdLDQvA grvdv R19G_ASCLU : 122- 137: hpdgn GRvLTkqG-RkdLDRiA sqmrq R19S_ASCLU : 122- 137: hpdgn GRiLTkqG-RkdLDRiA sqmrq RS12_HALMA : 115- 130: tsend GRrVTgdG-RslLDDtA gdllt RS19_DROME : 119- 134: khpdg GRkLSsiGqRd-LDRiA nqivf RS19_EMENI : 121- 136: deekg GRrITqsGqRd-LDRiA kttvd RS19_HUMAN : 119- 134: kdqdg GRkLTpqGqRd-LDRiA gqvaa RS19_RAT : 119- 134: kdqdg GRkLTpqGqRd-LDRiA gqvaa C 3: 35.8807 10( 10) R-x-[AIV]-L-Q-[AQST]-L-[EQ]-x(4)-[ILV]-[DEQ]-x(2)-[EPQ]-x(2)-[GN] Occurences: 10(10) R19A_YEAST : 101- 120: sgsin RkVLQALEkigiVEisPkgG rrise R19B_YEAST : 101- 120: sgsin RkVLQALEkigiVEisPkgG rrise R19E_ORYSA : 104- 123: sgais RnILQQLQkmgiIDvdPkgG rlits R19G_ASCLU : 102- 121: sgsvi RkALQTLEaikwVQkhPdgN grvlt R19S_ASCLU : 102- 121: sgsvi RkALQTLEaikwVEkhPdgN grilt RS12_HALMA : 96- 115: sgnii RtALQQLEdagyVEtsEndG rrvtg RS19_DROME : 100- 119: adgaa RkALQALEharlVEkhPdgG rklss RS19_EMENI : 101- 120: sgavd RkVLQSLEkigvLEqdEekG grrit RS19_HUMAN : 100- 119: sksva RrVLQALEglkmVEkdQdgG rkltp RS19_RAT : 100- 119: sksva RrVLQALEglkmVEkdQdgG rkltp D 4: 32.4479 10( 10) R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L-D-[DQR]-x-A Occurences: 10(10) R19A_YEAST : 121- 135: spkgg RrISenGqRd-LDRiA aqtle R19B_YEAST : 121- 135: spkgg RrISenGqRd-LDRiA aqtle R19E_ORYSA : 124- 138: dpkgg RlITsqGrRd-LDQvA grvdv R19E_ORYSA : 124- 138: dpkgg RlITsqG-RrdLDQvA grvdv R19G_ASCLU : 123- 137: pdgng RvLTkqG-RkdLDRiA sqmrq R19S_ASCLU : 123- 137: pdgng RiLTkqG-RkdLDRiA sqmrq RS12_HALMA : 116- 130: sendg RrVTgdG-RslLDDtA gdllt RS19_DROME : 120- 134: hpdgg RkLSsiGqRd-LDRiA nqivf RS19_EMENI : 122- 136: eekgg RrITqsGqRd-LDRiA kttvd RS19_HUMAN : 120- 134: dqdgg RkLTpqGqRd-LDRiA gqvaa RS19_RAT : 120- 134: dqdgg RkLTpqGqRd-LDRiA gqvaa E 5: 30.0074 10( 10) G-x(0,1)-G-R-x-[IL]-x(3)-[GT]-x(2)-D-L-x(3)-[AL] Occurences: 10(10) R19A_YEAST : 119- 135: eispk G-GRrIsenGqrDLdriA aqtle R19B_YEAST : 119- 135: eispk G-GRrIsenGqrDLdriA aqtle R19E_ORYSA : 122- 138: dvdpk G-GRlItsqGrrDLdqvA grvdv R19G_ASCLU : 120- 137: qkhpd GnGRvLtkqGrkDLdriA sqmrq R19S_ASCLU : 120- 137: ekhpd GnGRiLtkqGrkDLdriA sqmrq RS12_HALMA : 120- 137: grrvt GdGRsLlddTagDLlteL drpee RS19_DROME : 118- 134: ekhpd G-GRkLssiGqrDLdriA nqivf RS19_EMENI : 120- 136: qdeek G-GRrItqsGqrDLdriA kttvd RS19_HUMAN : 118- 134: ekdqd G-GRkLtpqGqrDLdriA gqvaa RS19_RAT : 118- 134: ekdqd G-GRkLtpqGqrDLdriA gqvaa F 6: 29.7815 13( 10) G-x(1,2)-R-x(4,5)-G-[QR]-x(2)-L-D-[DQR]-x-A Occurences: 13(10) R19A_YEAST : 119- 135: eispk GgrRisen-GQrdLDRiA aqtle R19A_YEAST : 119- 135: eispk Gg-RrisenGQrdLDRiA aqtle R19A_YEAST : 120- 135: ispkg Gr-Risen-GQrdLDRiA aqtle R19B_YEAST : 119- 135: eispk GgrRisen-GQrdLDRiA aqtle R19B_YEAST : 119- 135: eispk Gg-RrisenGQrdLDRiA aqtle R19B_YEAST : 120- 135: ispkg Gr-Risen-GQrdLDRiA aqtle R19E_ORYSA : 122- 138: dvdpk Gg-RlitsqGRrdLDQvA grvdv R19G_ASCLU : 120- 137: qkhpd GngRvltkqGRkdLDRiA sqmrq R19S_ASCLU : 120- 137: ekhpd GngRiltkqGRkdLDRiA sqmrq RS12_HALMA : 115- 130: tsend Gr-Rvtgd-GRslLDDtA gdllt RS19_DROME : 118- 134: ekhpd Gg-RklssiGQrdLDRiA nqivf RS19_EMENI : 120- 136: qdeek GgrRitqs-GQrdLDRiA kttvd RS19_EMENI : 120- 136: qdeek Gg-RritqsGQrdLDRiA kttvd RS19_EMENI : 121- 136: deekg Gr-Ritqs-GQrdLDRiA kttvd RS19_HUMAN : 118- 134: ekdqd Gg-RkltpqGQrdLDRiA gqvaa RS19_RAT : 118- 134: ekdqd Gg-RkltpqGQrdLDRiA gqvaa G 7: 29.0452 10( 10) L-Q-[AQST]-L-[EQ]-x(4)-[ILV]-[DEQ]-x(2)-[EPQ]-x(2)-[GN] Occurences: 10(10) R19A_YEAST : 104- 120: inrkv LQALEkigiVEisPkgG rrise R19B_YEAST : 104- 120: inrkv LQALEkigiVEisPkgG rrise R19E_ORYSA : 107- 123: isrni LQQLQkmgiIDvdPkgG rlits R19G_ASCLU : 105- 121: virka LQTLEaikwVQkhPdgN grvlt R19S_ASCLU : 105- 121: virka LQTLEaikwVEkhPdgN grilt RS12_HALMA : 99- 115: iirta LQQLEdagyVEtsEndG rrvtg RS19_DROME : 103- 119: aarka LQALEharlVEkhPdgG rklss RS19_EMENI : 104- 120: vdrkv LQSLEkigvLEqdEekG grrit RS19_HUMAN : 103- 119: varrv LQALEglkmVEkdQdgG rkltp RS19_RAT : 103- 119: varrv LQALEglkmVEkdQdgG rkltp H 8: 28.7867 17( 10) G-x(0,1)-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(3)-[DR]-x(3)-[GQST]-x(4)-[DENQT] Occurences: 17(10) R19A_YEAST : 119- 142: eispk GgRrISenGqRdldRiaaQtleeD e R19A_YEAST : 120- 142: ispkg G-RrISenGqRdldRiaaQtleeD e R19B_YEAST : 119- 142: eispk GgRrISenGqRdldRiaaQtleeD e R19B_YEAST : 120- 142: ispkg G-RrISenGqRdldRiaaQtleeD e R19E_ORYSA : 122- 144: dvdpk GgRlITsqG-RrdlDqvaGrvdvT ia R19E_ORYSA : 123- 144: vdpkg G-RlITsqG-RrdlDqvaGrvdvT ia R19G_ASCLU : 122- 143: hpdgn G-RvLTkqG-RkdlDriaSqmrqN drfta R19S_ASCLU : 122- 143: hpdgn G-RiLTkqG-RkdlDriaSqmrqN tkitl RS12_HALMA : 115- 136: tsend G-RrVTgdG-RsllDdtaGdlltE ldrpe RS19_DROME : 118- 141: ekhpd GgRkLSsiGqRdldRianQivfkQ rdaak RS19_DROME : 119- 141: khpdg G-RkLSsiGqRdldRianQivfkQ rdaak RS19_EMENI : 120- 143: qdeek GgRrITqsGqRdldRiakTtvdeE eedde RS19_EMENI : 121- 143: deekg G-RrITqsGqRdldRiakTtvdeE eedde RS19_HUMAN : 118- 141: ekdqd GgRkLTpqGqRdldRiagQvaaaN kkh RS19_HUMAN : 119- 141: kdqdg G-RkLTpqGqRdldRiagQvaaaN kkh RS19_RAT : 118- 141: ekdqd GgRkLTpqGqRdldRiagQvaaaN kkh RS19_RAT : 119- 141: kdqdg G-RkLTpqGqRdldRiagQvaaaN kkh I 9: 28.2517 10( 10) S-x(2)-[GIV]-x-R-x(1,2)-L-[DQ]-x-[IL]-[AEQ]-x(4)-[FILV]-x(3)-[DEPQ] Occurences: 10(10) R19A_YEAST : 96- 117: khida SgsInRkvLQaLEkigiVeisP kggrr R19B_YEAST : 96- 117: khida SgsInRkvLQaLEkigiVeisP kggrr R19E_ORYSA : 99- 120: hfcks SgaIsRniLQqLQkmgiIdvdP kggrl R19G_ASCLU : 97- 118: hfaka SgsViRkaLQtLEaikwVqkhP dgngr R19S_ASCLU : 97- 118: hfara SgsViRkaLQtLEaikwVekhP dgngr RS12_HALMA : 91- 112: qktkg SgnIiRtaLQqLEdagyVetsE ndgrr RS19_DROME : 123- 143: ggrkl SsiGqRd-LDrIAnqivFkqrD aakqt RS19_EMENI : 96- 117: hhvda SgaVdRkvLQsLEkigvLeqdE ekggr RS19_HUMAN : 95- 116: hfsrg SksVaRrvLQaLEglkmVekdQ dggrk RS19_RAT : 95- 116: hfsrg SksVaRrvLQaLEglkmVekdQ dggrk J 10: 25.6875 10( 10) G-R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L Occurences: 10(10) R19A_YEAST : 120- 131: ispkg GRrISenGqRd-L driaa R19B_YEAST : 120- 131: ispkg GRrISenGqRd-L driaa R19E_ORYSA : 123- 134: vdpkg GRlITsqGrRd-L dqvag R19E_ORYSA : 123- 134: vdpkg GRlITsqG-RrdL dqvag R19G_ASCLU : 122- 133: hpdgn GRvLTkqG-RkdL drias R19S_ASCLU : 122- 133: hpdgn GRiLTkqG-RkdL drias RS12_HALMA : 115- 126: tsend GRrVTgdG-RslL ddtag RS19_DROME : 119- 130: khpdg GRkLSsiGqRd-L drian RS19_EMENI : 121- 132: deekg GRrITqsGqRd-L driak RS19_HUMAN : 119- 130: kdqdg GRkLTpqGqRd-L driag RS19_RAT : 119- 130: kdqdg GRkLTpqGqRd-L driag K 11: 22.4414 10( 10) G-[QR]-x(2)-L-D-[DQR]-x-A Occurences: 10(10) R19A_YEAST : 127- 135: risen GQrdLDRiA aqtle R19B_YEAST : 127- 135: risen GQrdLDRiA aqtle R19E_ORYSA : 130- 138: litsq GRrdLDQvA grvdv R19G_ASCLU : 129- 137: vltkq GRkdLDRiA sqmrq R19S_ASCLU : 129- 137: iltkq GRkdLDRiA sqmrq RS12_HALMA : 122- 130: rvtgd GRslLDDtA gdllt RS19_DROME : 126- 134: klssi GQrdLDRiA nqivf RS19_EMENI : 128- 136: ritqs GQrdLDRiA kttvd RS19_HUMAN : 126- 134: kltpq GQrdLDRiA gqvaa RS19_RAT : 126- 134: kltpq GQrdLDRiA gqvaa L 12: 21.5175 10( 10) R-x-[ILV]-[ST]-x(2)-G-x(0,1)-R-x(1,2)-L Occurences: 10(10) R19A_YEAST : 121- 131: spkgg RrISenGqRd-L driaa R19B_YEAST : 121- 131: spkgg RrISenGqRd-L driaa R19E_ORYSA : 124- 134: dpkgg RlITsqGrRd-L dqvag R19E_ORYSA : 124- 134: dpkgg RlITsqG-RrdL dqvag R19G_ASCLU : 123- 133: pdgng RvLTkqG-RkdL drias R19S_ASCLU : 123- 133: pdgng RiLTkqG-RkdL drias RS12_HALMA : 116- 126: sendg RrVTgdG-RslL ddtag RS19_DROME : 120- 130: hpdgg RkLSsiGqRd-L drian RS19_EMENI : 122- 132: eekgg RrITqsGqRd-L driak RS19_HUMAN : 120- 130: dqdgg RkLTpqGqRd-L driag RS19_RAT : 120- 130: dqdgg RkLTpqGqRd-L driag M 13: 21.0294 11( 10) S-x(0,1)-G-x(3,5)-R-x-[AIV]-x-Q-x-[LV] Occurences: 11(10) R19A_YEAST : 96- 107: khida S-Gsin--RkVlQaL ekigi R19B_YEAST : 96- 107: khida S-Gsin--RkVlQaL ekigi R19E_ORYSA : 98- 110: phfck SsGais--RnIlQqL qkmgi R19E_ORYSA : 99- 110: hfcks S-Gais--RnIlQqL qkmgi R19G_ASCLU : 97- 108: hfaka S-Gsvi--RkAlQtL eaikw R19S_ASCLU : 97- 108: hfara S-Gsvi--RkAlQtL eaikw RS12_HALMA : 91- 102: qktkg S-Gnii--RtAlQqL edagy RS19_DROME : 124- 138: grkls SiGqrdldRiAnQiV fkqrd RS19_EMENI : 96- 107: hhvda S-Gavd--RkVlQsL ekigv RS19_HUMAN : 92- 106: mpshf SrGsksvaRrVlQaL eglkm RS19_RAT : 92- 106: rpshf SrGsksvaRrVlQaL eglkm N 14: 18.7705 11( 10) R-x(1,2)-L-D-[DQR]-x-A Occurences: 11(10) R19A_YEAST : 129- 135: sengq Rd-LDRiA aqtle R19B_YEAST : 129- 135: sengq Rd-LDRiA aqtle R19E_ORYSA : 131- 138: itsqg RrdLDQvA grvdv R19E_ORYSA : 132- 138: tsqgr Rd-LDQvA grvdv R19G_ASCLU : 130- 137: ltkqg RkdLDRiA sqmrq R19S_ASCLU : 130- 137: ltkqg RkdLDRiA sqmrq RS12_HALMA : 123- 130: vtgdg RslLDDtA gdllt RS19_DROME : 128- 134: ssigq Rd-LDRiA nqivf RS19_EMENI : 130- 136: tqsgq Rd-LDRiA kttvd RS19_HUMAN : 128- 134: tpqgq Rd-LDRiA gqvaa RS19_RAT : 128- 134: tpqgq Rd-LDRiA gqvaa O 15: 18.3190 10( 10) R-x(2)-Y-x(5)-G-[TV]-[DGT] Occurences: 10(10) R19A_YEAST : 62- 73: aasva RhiYmrkqvGVG klnkl R19B_YEAST : 62- 73: aasva RhiYmrkqvGVG klnkl R19E_ORYSA : 65- 76: aasia RkiYlrqgiGVG gfqki R19G_ASCLU : 63- 74: tasia RrlYvrsptGVD alrlv R19S_ASCLU : 63- 74: tasva RrlYirsptGVG alrrv RS12_HALMA : 67- 78: gvnal RseYgtskqGTT ryrvr RS19_DROME : 61- 72: casil RhlYhrspaGVG sitki RS19_EMENI : 62- 73: aaava RhiYlrktvGVG rlrkv RS19_HUMAN : 61- 72: aasta RhlYlrggaGVG smtki RS19_RAT : 61- 72: aasta RhlYlrggaGVG smtki P 16: 17.7736 11( 10) K-x-[AGS]-x(3)-E-x(1,2)-P-x(1,3)-D Occurences: 11(10) R19A_YEAST : 37- 48: yvdiv KtSsgnEmpPq--D aegwf R19A_YEAST : 37- 48: yvdiv KtSsgnEm-Ppq-D aegwf R19B_YEAST : 37- 48: yvdiv KtSsgnEmpPq--D aegwf R19B_YEAST : 37- 48: yvdiv KtSsgnEm-Ppq-D aegwf R19E_ORYSA : 26- 38: ysahl KrSgkmEl-PewvD ivkta R19E_ORYSA : 41- 52: wvdiv KtArfkElpPy--D pdwyy R19E_ORYSA : 41- 52: wvdiv KtArfkEl-Ppy-D pdwyy R19E_ORYSA : 41- 54: wvdiv KtArfkElpPydpD wyytr R19G_ASCLU : 39- 52: wsdvt KmGiskElaPlnsD wyyvr R19S_ASCLU : 39- 50: wsdlv KlGitkElaPv--D sdwyy R19S_ASCLU : 39- 52: wsdlv KlGitkElaPvdsD wyyvr RS12_HALMA : 29- 42: waeft KtGvdrElpPeqeD fwtrr RS19_DROME : 37- 48: qmdii KtAkfkElaPy--D pdwfy RS19_DROME : 37- 50: qmdii KtAkfkElaPydpD wfyvr RS19_EMENI : 38- 49: wvdtv KtSasnElpPq--D adwyy RS19_EMENI : 38- 49: wvdtv KtSasnEl-Ppq-D adwyy RS19_EMENI : 38- 51: wvdtv KtSasnElpPqdaD wyyvr RS19_HUMAN : 37- 48: wvdtv KlAkhkElaPy--D enwfy RS19_RAT : 37- 48: wvdtv KlAkhkElaPy--D enwfy Q 17: 17.3240 10( 10) V-x(3)-[NQST]-K-x(2)-G-[GSV] Occurences: 10(10) R19A_YEAST : 72- 81: rkqvg VgklNKlyGG aksrg R19B_YEAST : 72- 81: rkqvg VgklNKlyGG aksrg R19E_ORYSA : 75- 84: rqgig VggfQKiyGG rqrng R19G_ASCLU : 79- 88: dalrl VyggSKrrGV vpnhf R19S_ASCLU : 79- 88: galrr VyggNKrrGV tpnhf RS12_HALMA : 82- 91: ttryr VrphQKtkGS gniir RS19_DROME : 71- 80: rspag VgsiTKiyGG rkrng RS19_EMENI : 78- 87: grlrk VhgsTKnrGS rpahh RS19_HUMAN : 71- 80: rggag VgsmTKiyGG rqrng RS19_RAT : 71- 80: rggag VgsmTKiyGG rqrng R 18: 17.2167 15( 10) G-x(0,1)-R-x-L-x(3)-[AGT]-x(2)-[DTV] Occurences: 15(10) R19A_YEAST : 127- 138: risen GqRdLdriAaqT leede R19B_YEAST : 127- 138: risen GqRdLdriAaqT leede R19E_ORYSA : 130- 141: litsq GrRdLdqvAgrV dvtia R19G_ASCLU : 122- 132: hpdgn G-RvLtkqGrkD ldria R19S_ASCLU : 122- 132: hpdgn G-RiLtkqGrkD ldria RS12_HALMA : 122- 132: rvtgd G-RsLlddTagD lltel RS19_DROME : 118- 129: ekhpd GgRkLssiGqrD ldria RS19_DROME : 119- 129: khpdg G-RkLssiGqrD ldria RS19_EMENI : 128- 139: ritqs GqRdLdriAktT vdeee RS19_HUMAN : 118- 129: ekdqd GgRkLtpqGqrD ldria RS19_HUMAN : 119- 129: kdqdg G-RkLtpqGqrD ldria RS19_HUMAN : 126- 137: kltpq GqRdLdriAgqV aaank RS19_RAT : 118- 129: ekdqd GgRkLtpqGqrD ldria RS19_RAT : 119- 129: kdqdg G-RkLtpqGqrD ldria RS19_RAT : 126- 137: kltpq GqRdLdriAgqV aaank S 19: 16.8685 13( 10) G-x(1,2)-R-x-L-[DPST]-x(2)-[AGQ] Occurences: 13(10) R19A_YEAST : 127- 135: risen Gq-RdLDriA aqtle R19B_YEAST : 127- 135: risen Gq-RdLDriA aqtle R19E_ORYSA : 130- 138: litsq Gr-RdLDqvA grvdv R19G_ASCLU : 120- 129: qkhpd GngRvLTkqG rkdld R19S_ASCLU : 120- 129: ekhpd GngRiLTkqG rkdld RS12_HALMA : 31- 40: eftkt GvdReLPpeQ edfwt RS19_DROME : 118- 126: ekhpd Gg-RkLSsiG qrdld RS19_DROME : 126- 134: klssi Gq-RdLDriA nqivf RS19_EMENI : 128- 136: ritqs Gq-RdLDriA kttvd RS19_HUMAN : 118- 126: ekdqd Gg-RkLTpqG qrdld RS19_HUMAN : 126- 134: kltpq Gq-RdLDriA gqvaa RS19_RAT : 118- 126: ekdqd Gg-RkLTpqG qrdld RS19_RAT : 126- 134: kltpq Gq-RdLDriA gqvaa T 20: 15.1005 10( 10) L-D-[DQR]-x-A Occurences: 10(10) R19A_YEAST : 131- 135: ngqrd LDRiA aqtle R19B_YEAST : 131- 135: ngqrd LDRiA aqtle R19E_ORYSA : 134- 138: qgrrd LDQvA grvdv R19G_ASCLU : 133- 137: qgrkd LDRiA sqmrq R19S_ASCLU : 133- 137: qgrkd LDRiA sqmrq RS12_HALMA : 126- 130: dgrsl LDDtA gdllt RS19_DROME : 130- 134: igqrd LDRiA nqivf RS19_EMENI : 132- 136: sgqrd LDRiA kttvd RS19_HUMAN : 130- 134: qgqrd LDRiA gqvaa RS19_RAT : 130- 134: qgqrd LDRiA gqvaa Number of patterns evaluated by Pratt:948 Total running time: 0 seconds