------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 34 sequences from file RIBOSOMAL_S19 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 34 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S19.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS15_HUMAN 144 RS15_PODAN 152 RS15_XENLA 144 RS15_YEAST 142 RS19_ACHLA 25 RS19_ASTLO 118 RS19_BACST 91 RS19_BACSU 91 RS19_CYAPA 92 RS19_ECOLI 91 RS19_EPIVI 94 RS19_EUGGR 94 RS19_HAEIN 90 RS19_HALHA 115 RS19_HALMA 140 RS19_MAIZE 92 RS19_MARPO 91 RS19_MYCCA 88 RS19_ORYSA 92 RS19_PEA 91 RS19_PETHY 22 RS19_SECCE 92 RS19_SINAL 48 RS19_SOYBN 91 RS19_SPIOL 91 RS19_THEMA 95 RS19_TOBAC 91 RS19_YERPS 73 RS1Y_ARATH 152 RS1Y_ORYSA 152 RT19_ARATH 212 RT19_MARPO 93 RT19_PETHY 94 RT19_PROWI 78 Pratt run started at Thu Feb 6 21:06:10 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 59( 34) R-x(2,3)-K 2: 7.3401 149( 34) K-x(2,4)-K 3: 7.3401 70( 34) K-x(1,3)-V 4: 7.3401 92( 34) T-x(0,2)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 59( 34) R-x(2,3)-K B 2: 7.3401 149( 34) K-x(2,4)-K C 3: 7.3401 70( 34) K-x(1,3)-V D 4: 7.3401 92( 34) T-x(0,2)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 59( 34) R-x(2,3)-K Occurences: 59(34) RS15_HUMAN : 9- 13: eqkkk RtfrK ftyrg RS15_HUMAN : 58- 61: hsllk Rlr-K akkea RS15_HUMAN : 60- 63: llkrl Rka-K keapp RS15_HUMAN : 60- 64: llkrl RkakK eappm RS15_PODAN : 17- 21: elkkk RtfrK fsyrg RS15_PODAN : 47- 51: dvvha RarrK inrgl RS15_PODAN : 54- 57: rrkin Rgl-K rrpmg RS15_PODAN : 68- 71: likkl Rka-K qeakp RS15_XENLA : 9- 12: eqkkk Rtf-K kftyr RS15_XENLA : 9- 13: eqkkk RtfkK ftyrg RS15_XENLA : 58- 61: nsllk Rlr-K akkea RS15_XENLA : 60- 63: llkrl Rka-K keapp RS15_XENLA : 60- 64: llkrl RkakK eappm RS15_YEAST : 10- 13: vnakk Rvf-K thsyr RS15_YEAST : 61- 64: fmkkl Raa-K laape RS19_ACHLA : 14- 17: ptrtf Rgh-K kedkk RS19_ACHLA : 14- 18: ptrtf RghkK edkkv RS19_ASTLO : 3- 6: ms Rss-K kspfi RS19_ASTLO : 3- 7: ms RsskK spfis RS19_ASTLO : 81- 84: rtrnf Rgh-K ginkk RS19_BACST : 2- 5: g Rsl-K kgpfc RS19_BACST : 2- 6: g RslkK gpfcd RS19_BACSU : 2- 5: a Rsl-K kgpfv RS19_BACSU : 2- 6: a RslkK gpfvd RS19_BACSU : 77- 80: efapt Rty-K ghasd RS19_CYAPA : 3- 6: ma Rsl-K kgpfi RS19_CYAPA : 3- 7: ma RslkK gpfia RS19_CYAPA : 78- 81: efapt Rtf-K ghtks RS19_ECOLI : 2- 5: p Rsl-K kgpfi RS19_ECOLI : 2- 6: p RslkK gpfid RS19_EPIVI : 83- 87: ptlnf RghaK sdnrs RS19_EUGGR : 3- 6: ms Rsl-K kgpfv RS19_EUGGR : 3- 7: ms RslkK gpfvf RS19_EUGGR : 81- 84: qtrny Rgh-K khdkk RS19_EUGGR : 81- 85: qtrny RghkK hdkkt RS19_HAEIN : 2- 5: p Rsl-K kgpfl RS19_HAEIN : 2- 6: p RslkK gpfld RS19_HALHA : 107- 110: gigat Rss-K fvplk RS19_HALMA : 132- 135: gigat Rss-K fvplk RS19_MAIZE : 85- 89: syest RkdtK srr RS19_MARPO : 2- 5: t Rsi-K kgpfv RS19_MARPO : 2- 6: t RsikK gpfva RS19_MARPO : 80- 84: ptrtf RghaK ndkks RS19_MYCCA : 3- 6: ma Rsl-K kgpfv RS19_MYCCA : 3- 7: ma RslkK gpfvd RS19_ORYSA : 85- 89: syesa RkdtK srr RS19_PEA : 2- 5: t Rsr-K knpfv RS19_PEA : 2- 6: t RsrkK npfva RS19_PETHY : 2- 5: t Rsl-K knpfv RS19_PETHY : 2- 6: t RslkK npfva RS19_SECCE : 85- 89: syena RkdtK srr RS19_SINAL : 2- 5: t Rsl-K knpfv RS19_SINAL : 2- 6: t RslkK npfva RS19_SINAL : 16- 20: akhll RkieK lntka RS19_SOYBN : 2- 5: t Rsl-K knpfv RS19_SOYBN : 2- 6: t RslkK npfva RS19_SOYBN : 16- 20: anhll RkinK lntka RS19_SOYBN : 80- 84: ptlnf RghaK ndnrs RS19_SPIOL : 2- 5: t Rsl-K knpfv RS19_SPIOL : 2- 6: t RslkK npfva RS19_SPIOL : 16- 20: anhll RkieK lnkka RS19_SPIOL : 80- 84: ptlnf RghaK ndnks RS19_THEMA : 3- 6: mg Rsr-K kgpyv RS19_THEMA : 3- 7: mg RsrkK gpyvd RS19_TOBAC : 2- 5: t Rsl-K knpfv RS19_TOBAC : 2- 6: t RslkK npfva RS19_TOBAC : 80- 84: ptlnf RghaK sdnrs RS19_YERPS : 2- 5: p Rsl-K kgpfi RS19_YERPS : 2- 6: p RslkK gpfid RS1Y_ARATH : 17- 20: gvpkk Rtf-K kfafk RS1Y_ARATH : 17- 21: gvpkk RtfkK fafkg RS1Y_ARATH : 68- 71: likkl Rka-K reapq RS1Y_ORYSA : 19- 23: aqpkk RtfrK ysyrg RS1Y_ORYSA : 55- 58: rrrfq Rgl-K rkpma RT19_ARATH : 134- 138: nkmms RsvwK dpfvd RT19_ARATH : 203- 206: efaft Rkv-K khaka RT19_ARATH : 203- 207: efaft RkvkK hakak RT19_MARPO : 3- 7: mt RsiwK gpfvd RT19_PETHY : 4- 8: mpr RsiwK gsfvd RT19_PETHY : 18- 21: dafll Rmk-K krdll RT19_PETHY : 18- 22: dafll RmkkK rdllf RT19_PETHY : 89- 93: nigpg RkrgK k RT19_PETHY : 91- 94: gpgrk Rgk-K RT19_PROWI : 3- 7: ma RslsK ppfce B 2: 7.3401 149( 34) K-x(2,4)-K Occurences: 149(34) RS15_HUMAN : 8- 13: veqkk KrtfrK ftyrg RS15_HUMAN : 57- 61: qhsll Krlr-K akkea RS15_HUMAN : 61- 64: lkrlr Kak--K eappm RS15_HUMAN : 71- 76: appme KpevvK thlrd RS15_HUMAN : 123- 126: fsity Kpv--K hgrpg RS15_PODAN : 16- 21: aelkk KrtfrK fsyrg RS15_PODAN : 65- 69: pmgli Kklr-K akqea RS15_PODAN : 66- 69: mglik Klr--K akqea RS15_PODAN : 66- 71: mglik KlrkaK qeakp RS15_PODAN : 71- 75: klrka Kqea-K pnekp RS15_PODAN : 75- 79: akqea Kpne-K pdlvk RS15_PODAN : 79- 84: akpne KpdlvK thlrd RS15_PODAN : 131- 134: fsisy Kpv--K hgrpg RS15_XENLA : 7- 12: eveqk KkrtfK kftyr RS15_XENLA : 8- 12: veqkk Krtf-K kftyr RS15_XENLA : 8- 13: veqkk KrtfkK ftyrg RS15_XENLA : 57- 61: qnsll Krlr-K akkea RS15_XENLA : 61- 64: lkrlr Kak--K eappm RS15_XENLA : 71- 76: appme KpeviK thlrd RS15_XENLA : 123- 126: fsity Kpv--K hgrpg RS15_YEAST : 8- 13: qavna KkrvfK thsyr RS15_YEAST : 9- 13: avnak Krvf-K thsyr RS15_YEAST : 59- 64: agfmk KlraaK laape RS19_ACHLA : 17- 21: tfrgh Kked-K kvkr RS19_ACHLA : 17- 22: tfrgh KkedkK vkr RS19_ACHLA : 18- 21: frghk Ked--K kvkr RS19_ACHLA : 18- 22: frghk Kedk-K vkr RS19_ACHLA : 21- 24: hkked Kkv--K r RS19_ASTLO : 21- 25: fntid Kmnl-K nlkql RS19_ASTLO : 25- 28: dkmnl Knl--K qlvft RS19_ASTLO : 84- 88: nfrgh Kgin-K klikk RS19_ASTLO : 84- 89: nfrgh KginkK likks RS19_ASTLO : 88- 92: hkgin Kkli-K ksskk RS19_ASTLO : 88- 93: hkgin KklikK sskkv RS19_ASTLO : 89- 92: kgink Kli--K ksskk RS19_ASTLO : 89- 93: kgink Klik-K sskkv RS19_ASTLO : 92- 96: nkkli Kkss-K kvtkn RS19_ASTLO : 92- 97: nkkli KksskK vtknk RS19_ASTLO : 93- 96: kklik Kss--K kvtkn RS19_ASTLO : 93- 97: kklik Kssk-K vtknk RS19_ASTLO : 96- 100: ikkss Kkvt-K nkksi RS19_ASTLO : 97- 100: kkssk Kvt--K nkksi RS19_ASTLO : 97- 102: kkssk KvtknK ksikk RS19_ASTLO : 100- 103: skkvt Knk--K sikkn RS19_ASTLO : 102- 106: kvtkn Kksi-K knikt RS19_ASTLO : 102- 107: kvtkn KksikK niktt RS19_ASTLO : 103- 106: vtknk Ksi--K knikt RS19_ASTLO : 103- 107: vtknk Ksik-K niktt RS19_ASTLO : 106- 110: nkksi Kkni-K ttskk RS19_ASTLO : 107- 110: kksik Kni--K ttskk RS19_ASTLO : 110- 114: ikkni Ktts-K kfkk RS19_ASTLO : 110- 115: ikkni KttskK fkk RS19_ASTLO : 114- 117: iktts Kkf--K k RS19_ASTLO : 114- 118: iktts Kkfk-K RS19_ASTLO : 115- 118: kttsk Kfk--K RS19_BACST : 16- 20: dehlm Kkie-K lnetg RS19_BACST : 17- 20: ehlmk Kie--K lnetg RS19_BACST : 27- 31: netgq Kqvi-K twsrr RS19_BACST : 87- 90: hagdd Kkt--K r RS19_BACSU : 17- 20: ghlmt Kie--K lnetd RS19_BACSU : 26- 31: lnetd KkqvvK twsrr RS19_BACSU : 27- 31: netdk Kqvv-K twsrr RS19_CYAPA : 27- 32: lntsg KteviK twsra RS19_CYAPA : 81- 85: ptrtf Kght-K sdkka RS19_CYAPA : 85- 88: fkght Ksd--K karr RS19_CYAPA : 85- 89: fkght Ksdk-K arr RS19_ECOLI : 16- 20: dlhll Kkve-K avesg RS19_ECOLI : 17- 20: lhllk Kve--K avesg RS19_ECOLI : 86- 89: ghaad Kka--K kk RS19_ECOLI : 86- 90: ghaad Kkak-K k RS19_ECOLI : 86- 91: ghaad KkakkK RS19_ECOLI : 87- 90: haadk Kak--K k RS19_ECOLI : 87- 91: haadk Kakk-K RS19_EPIVI : 20- 23: nhlra Kin--K lnnkk RS19_EPIVI : 23- 27: rakin Klnn-K kkkei RS19_EPIVI : 23- 28: rakin KlnnkK kkeii RS19_EPIVI : 27- 30: nklnn Kkk--K eiivt RS19_EUGGR : 84- 88: nyrgh Kkhd-K ktktk RS19_EUGGR : 84- 89: nyrgh KkhdkK tktkr RS19_EUGGR : 85- 88: yrghk Khd--K ktktk RS19_EUGGR : 85- 89: yrghk Khdk-K tktkr RS19_EUGGR : 88- 91: hkkhd Kkt--K tkr RS19_EUGGR : 88- 93: hkkhd KktktK r RS19_EUGGR : 89- 93: kkhdk Ktkt-K r RS19_HAEIN : 16- 20: dlhll Kkve-K avesg RS19_HAEIN : 17- 20: lhllk Kve--K avesg RS19_HAEIN : 27- 31: vesgd Kkpi-K twsrr RS19_HAEIN : 28- 31: esgdk Kpi--K twsrr RS19_HAEIN : 86- 89: ghaad Kka--K k RS19_HAEIN : 86- 90: ghaad Kkak-K RS19_HAEIN : 87- 90: haadk Kak--K RS19_HALHA : 110- 115: atrss KfvplK RS19_HALMA : 53- 57: teekh Klle-K areag RS19_HALMA : 135- 140: atrss KfvplK RS19_MAIZE : 16- 19: rhlla Kie--K vnmke RS19_MAIZE : 19- 23: lakie Kvnm-K eekei RS19_MAIZE : 23- 26: ekvnm Kee--K eiivt RS19_MAIZE : 86- 89: yestr Kdt--K srr RS19_MARPO : 24- 27: enlnl Kke--K kiiit RS19_MARPO : 24- 28: enlnl Kkek-K iiitw RS19_MARPO : 25- 28: nlnlk Kek--K iiitw RS19_MARPO : 84- 87: frgha Knd--K ksrr RS19_MARPO : 84- 88: frgha Kndk-K srr RS19_MYCCA : 18- 23: enlfk KvtsaK dgevi RS19_MYCCA : 84- 87: ghgdd Kgk--K k RS19_MYCCA : 84- 88: ghgdd Kgkk-K RS19_ORYSA : 16- 19: hhlla Kie--K vnmke RS19_ORYSA : 19- 23: lakie Kvnm-K eeket RS19_ORYSA : 23- 26: ekvnm Kee--K etivt RS19_ORYSA : 86- 89: yesar Kdt--K srr RS19_PEA : 16- 19: anhll Kki--K klntk RS19_PEA : 16- 20: anhll Kkik-K lntkg RS19_PEA : 17- 20: nhllk Kik--K lntkg RS19_PEA : 19- 24: llkki KklntK gekai RS19_PEA : 20- 24: lkkik Klnt-K gekai RS19_PEA : 24- 27: kklnt Kge--K aiikt RS19_PEA : 27- 31: ntkge Kaii-K twsrk RS19_PEA : 31- 36: ekaii KtwsrK stiip RS19_PEA : 84- 88: fggfa Kndn-K srr RS19_PETHY : 17- 20: nhlln Kid--K ln RS19_SECCE : 16- 19: hhlla Kie--K vnmke RS19_SECCE : 19- 23: lakie Kvnm-K eeket RS19_SECCE : 23- 26: ekvnm Kee--K etivt RS19_SECCE : 86- 89: yenar Kdt--K srr RS19_SINAL : 12- 17: npfva KhllrK iekln RS19_SINAL : 17- 20: khllr Kie--K lntka RS19_SINAL : 20- 24: lrkie Klnt-K aekqi RS19_SINAL : 24- 27: eklnt Kae--K qiiit RS19_SOYBN : 17- 20: nhllr Kin--K lntka RS19_SOYBN : 20- 24: lrkin Klnt-K aekdi RS19_SOYBN : 24- 27: nklnt Kae--K diiit RS19_SPIOL : 17- 20: nhllr Kie--K lnkka RS19_SPIOL : 20- 23: lrkie Kln--K kaeke RS19_SPIOL : 20- 24: lrkie Klnk-K aekei RS19_SPIOL : 23- 27: iekln Kkae-K eiivt RS19_SPIOL : 24- 27: eklnk Kae--K eiivt RS19_SPIOL : 84- 88: frgha Kndn-K srr RS19_THEMA : 14- 18: pyvdr Klle-K irkln RS19_THEMA : 18- 21: rklle Kir--K lnetg RS19_THEMA : 28- 32: netge Kkvi-K twsra RS19_THEMA : 29- 32: etgek Kvi--K twsra RS19_THEMA : 86- 89: gghad Kka--K kgelk RS19_THEMA : 86- 90: gghad Kkak-K gelkk RS19_THEMA : 87- 90: ghadk Kak--K gelkk RS19_THEMA : 89- 94: adkka KkgelK k RS19_THEMA : 90- 94: dkkak Kgel-K k RS19_THEMA : 90- 95: dkkak KgelkK RS19_TOBAC : 16- 20: anhll Kkid-K lntka RS19_TOBAC : 17- 20: nhllk Kid--K lntka RS19_TOBAC : 20- 24: lkkid Klnt-K aekei RS19_TOBAC : 24- 27: dklnt Kae--K eiivt RS19_YERPS : 16- 20: dlhll Kkve-K avesg RS19_YERPS : 17- 20: lhllk Kve--K avesg RS1Y_ARATH : 15- 20: aagvp KkrtfK kfafk RS1Y_ARATH : 16- 20: agvpk Krtf-K kfafk RS1Y_ARATH : 16- 21: agvpk KrtfkK fafkg RS1Y_ARATH : 20- 25: kkrtf KkfafK gvdld RS1Y_ARATH : 21- 25: krtfk Kfaf-K gvdld RS1Y_ARATH : 65- 69: pmali Kklr-K akrea RS1Y_ARATH : 66- 69: malik Klr--K akrea RS1Y_ARATH : 66- 71: malik KlrkaK reapq RS1Y_ARATH : 131- 134: fsisy Kpv--K hgrpg RS1Y_ORYSA : 18- 23: gaqpk KrtfrK ysyrg RS1Y_ORYSA : 131- 134: fsisy Kpv--K hgrpg RT19_ARATH : 126- 130: ieeae Kken-K mmsrs RT19_ARATH : 127- 130: eeaek Ken--K mmsrs RT19_ARATH : 186- 191: thvrc KitegK vghkf RT19_ARATH : 191- 195: kiteg Kvgh-K fgefa RT19_ARATH : 204- 207: faftr Kvk--K hakak RT19_ARATH : 206- 210: ftrkv Kkha-K ak RT19_ARATH : 207- 210: trkvk Kha--K ak RT19_ARATH : 207- 212: trkvk KhakaK RT19_MARPO : 17- 20: dtclf Kqk--K irwri RT19_MARPO : 83- 87: ralps Ktki-K pikkv RT19_MARPO : 85- 90: lpskt KikpiK kvr RT19_MARPO : 87- 90: sktki Kpi--K kvr RT19_MARPO : 87- 91: sktki Kpik-K vr RT19_PETHY : 59- 64: tfvrc KitegK vghkf RT19_PETHY : 64- 68: kiteg Kvgh-K fgefa RT19_PETHY : 90- 93: igpgr Krg--K k RT19_PETHY : 90- 94: igpgr Krgk-K RT19_PROWI : 70- 75: favtr KkpihK kkk RT19_PROWI : 71- 75: avtrk Kpih-K kkk RT19_PROWI : 71- 76: avtrk KpihkK kk RT19_PROWI : 75- 78: kkpih Kkk--K C 3: 7.3401 70( 34) K-x(1,3)-V Occurences: 70(34) RS15_HUMAN : 71- 74: appme Kpe-V vkthl RS15_HUMAN : 71- 75: appme KpevV kthlr RS15_HUMAN : 123- 125: fsity Kp--V khgrp RS15_PODAN : 79- 83: akpne KpdlV kthlr RS15_PODAN : 115- 119: nqvei KpemV ghylg RS15_PODAN : 131- 133: fsisy Kp--V khgrp RS15_XENLA : 71- 74: appme Kpe-V ikthl RS15_XENLA : 123- 125: fsity Kp--V khgrp RS15_YEAST : 8- 11: qavna Kkr-V fkths RS15_YEAST : 9- 11: avnak Kr--V fkths RS15_YEAST : 72- 76: apene KpapV rthmr RS19_ACHLA : 21- 23: hkked Kk--V kr RS19_ASTLO : 28- 31: nlknl Kql-V ftksr RS19_ASTLO : 55- 58: svyng Kny-V pflil RS19_ASTLO : 96- 98: ikkss Kk--V tknkk RS19_BACST : 27- 29: netgq Kq--V iktws RS19_BACSU : 6- 10: arslk KgpfV dghlm RS19_BACSU : 26- 29: lnetd Kkq-V vktws RS19_BACSU : 26- 30: lnetd KkqvV ktwsr RS19_BACSU : 27- 29: netdk Kq--V vktws RS19_BACSU : 27- 30: netdk Kqv-V ktwsr RS19_BACSU : 55- 57: vydgr Kh--V pvfis RS19_BACSU : 55- 59: vydgr KhvpV fised RS19_CYAPA : 17- 19: ahhll Kk--V ellnt RS19_CYAPA : 27- 30: lntsg Kte-V iktws RS19_ECOLI : 16- 18: dlhll Kk--V ekave RS19_ECOLI : 20- 22: lkkve Ka--V esgdk RS19_EPIVI : 9- 13: sptlk KnlfV anhlr RS19_EPIVI : 30- 34: nnkkk KeiiV twsra RS19_EUGGR : 7- 11: srslk KgpfV fysli RS19_EUGGR : 17- 19: fysli Kk--V dqmns RS19_EUGGR : 28- 30: nsnrf Ks--V iltws RS19_HAEIN : 16- 18: dlhll Kk--V ekave RS19_HAEIN : 20- 22: lkkve Ka--V esgdk RS19_HALHA : 110- 112: atrss Kf--V plk RS19_HALMA : 135- 137: atrss Kf--V plk RS19_MAIZE : 16- 20: rhlla KiekV nmkee RS19_MAIZE : 26- 30: nmkee KeiiV twsra RS19_MARPO : 6- 10: trsik KgpfV adhll RS19_MYCCA : 7- 11: arslk KgpfV denlf RS19_MYCCA : 17- 19: denlf Kk--V tsakd RS19_MYCCA : 23- 27: kvtsa KdgeV iktws RS19_MYCCA : 44- 48: pefig KtfgV yngke RS19_ORYSA : 16- 20: hhlla KiekV nmkee RS19_ORYSA : 26- 30: nmkee KetiV twsra RS19_PEA : 6- 10: trsrk KnpfV anhll RS19_PETHY : 6- 10: trslk KnpfV anhll RS19_SECCE : 16- 20: hhlla KiekV nmkee RS19_SECCE : 26- 30: nmkee KetiV twsra RS19_SINAL : 6- 10: trslk KnpfV akhll RS19_SOYBN : 6- 10: trslk KnpfV anhll RS19_SPIOL : 6- 10: trslk KnpfV anhll RS19_SPIOL : 27- 31: nkkae KeiiV twsra RS19_THEMA : 7- 11: grsrk KgpyV drkll RS19_THEMA : 28- 30: netge Kk--V iktws RS19_THEMA : 43- 45: smiip Kw--V ghgia RS19_THEMA : 56- 60: vyngm KhipV yiten RS19_TOBAC : 6- 10: trslk KnpfV anhll RS19_TOBAC : 27- 31: ntkae KeiiV twsra RS19_YERPS : 16- 18: dlhll Kk--V ekave RS19_YERPS : 20- 22: lkkve Ka--V esgdk RS1Y_ARATH : 25- 27: kkfaf Kg--V dldal RS1Y_ARATH : 79- 83: apqge KpepV rthlr RS1Y_ARATH : 131- 133: fsisy Kp--V khgrp RS1Y_ORYSA : 131- 133: fsisy Kp--V khgrp RT19_ARATH : 12- 15: lgghw Kqg-V nvpvs RT19_ARATH : 138- 142: srsvw KdpfV daflm RT19_ARATH : 180- 183: riyng Kth-V rckit RT19_MARPO : 7- 11: trsiw KgpfV dtclf RT19_MARPO : 47- 50: qiyng Kgf-V glkit RT19_MARPO : 90- 92: kikpi Kk--V r RT19_PETHY : 8- 12: rrsiw KgsfV dafll RT19_PETHY : 53- 56: riyng Ktf-V rckit RT19_PROWI : 38- 40: pqfvg Kt--V sihng D 4: 7.3401 92( 34) T-x(0,2)-R Occurences: 92(34) RS15_HUMAN : 10- 12: qkkkr Tf-R kftyr RS15_HUMAN : 15- 17: tfrkf Ty-R gvdld RS15_HUMAN : 77- 80: pevvk ThlR dmiil RS15_PODAN : 18- 20: lkkkr Tf-R kfsyr RS15_PODAN : 85- 88: pdlvk ThlR dmivv RS15_XENLA : 15- 17: tfkkf Ty-R gvdld RS15_XENLA : 77- 80: pevik ThlR dmiil RS15_YEAST : 78- 81: papvr ThmR nmiiv RS15_YEAST : 124- 127: fsity TpvR hgrag RS15_YEAST : 134- 137: graga TtsR fiplk RS15_YEAST : 135- 137: ragat Ts-R fiplk RS19_ACHLA : 10- 11: gefap T--R tfrgh RS19_ACHLA : 12- 14: faptr Tf-R ghkke RS19_ASTLO : 33- 36: kqlvf TksR sstvf RS19_ASTLO : 77- 78: gefsr T--R nfrgh RS19_BACST : 32- 35: kqvik TwsR rstif RS19_BACST : 78- 80: fapta Tf-R ghagd RS19_BACST : 89- 91: gddkk Tk-R RS19_BACSU : 32- 35: kqvvk TwsR rstif RS19_BACSU : 76- 77: gefap T--R tykgh RS19_BACSU : 89- 90: sddkk T--R r RS19_BACSU : 89- 91: sddkk Tr-R RS19_CYAPA : 33- 36: tevik TwsR astil RS19_CYAPA : 77- 78: gefap T--R tfkgh RS19_ECOLI : 32- 35: kkplr TwsR rstif RS19_ECOLI : 76- 77: gefap T--R tyrgh RS19_ECOLI : 78- 80: faptr Ty-R ghaad RS19_EPIVI : 35- 38: keiiv TwsR astii RS19_EUGGR : 33- 36: ksvil TwsR sctii RS19_EUGGR : 77- 78: gefvq T--R nyrgh RS19_EUGGR : 92- 94: dkktk Tk-R RS19_HAEIN : 32- 35: kkpik TwsR rsmii RS19_HAEIN : 76- 77: gefap T--R tyrgh RS19_HAEIN : 78- 80: faptr Ty-R ghaad RS19_HALHA : 17- 20: arqrr TitR glsee RS19_HALHA : 19- 20: qrrti T--R glsee RS19_HALHA : 48- 51: nnpir ThlR dmpvl RS19_HALHA : 92- 93: gefql T--R ssveh RS19_HALHA : 106- 107: agiga T--R sskfv RS19_HALMA : 73- 76: ndpir ThlR dmpvv RS19_HALMA : 117- 118: gefql T--R ssveh RS19_HALMA : 131- 132: agiga T--R sskfv RS19_MAIZE : 1- 2: T--R kktnp RS19_MAIZE : 31- 34: keiiv TwsR assil RS19_MAIZE : 75- 76: gefvp T--R hftsy RS19_MAIZE : 84- 85: tsyes T--R kdtks RS19_MAIZE : 88- 91: strkd TksR r RS19_MARPO : 1- 2: T--R sikkg RS19_MARPO : 32- 35: kkiii TwsR astiv RS19_MARPO : 62- 64: lpiyi Td-R mvghk RS19_MARPO : 76- 77: gefap T--R tfrgh RS19_MARPO : 78- 80: faptr Tf-R ghakn RS19_MYCCA : 30- 33: gevik TwsR rstif RS19_MYCCA : 74- 75: gefap T--R kfggh RS19_ORYSA : 1- 2: T--R kktnp RS19_ORYSA : 31- 34: ketiv TwsR assil RS19_ORYSA : 75- 76: gefvp T--R hftsy RS19_ORYSA : 88- 91: sarkd TksR r RS19_PEA : 1- 2: T--R srkkn RS19_PEA : 1- 4: TrsR kknpf RS19_PEA : 32- 35: kaiik TwsR kstii RS19_PEA : 62- 64: lpvyi Td-R mvghk RS19_PETHY : 1- 2: T--R slkkn RS19_SECCE : 1- 2: T--R kktnp RS19_SECCE : 31- 34: ketiv TwsR assil RS19_SECCE : 75- 76: gefvp T--R hftsy RS19_SECCE : 88- 91: narkd TksR r RS19_SINAL : 1- 2: T--R slkkn RS19_SINAL : 32- 35: kqiii TwsR aitge RS19_SINAL : 38- 41: wsrai TgeR relnp RS19_SOYBN : 1- 2: T--R slkkn RS19_SOYBN : 32- 35: kdiii TwsR astii RS19_SOYBN : 62- 64: lpiyi Td-R mvghk RS19_SPIOL : 1- 2: T--R slkkn RS19_SPIOL : 32- 35: keiiv TwsR astii RS19_SPIOL : 62- 64: lpiyi Td-R mvghk RS19_THEMA : 33- 36: kkvik TwsR asmii RS19_THEMA : 77- 78: gefap T--R rfggh RS19_THEMA : 77- 79: gefap Tr-R fggha RS19_TOBAC : 1- 2: T--R slkkn RS19_TOBAC : 32- 35: keiiv TwsR astii RS19_YERPS : 32- 35: kkpir TwsR rstvf RS1Y_ARATH : 57- 58: fsrgl T--R kpmal RS1Y_ARATH : 85- 88: pepvr ThlR nmiiv RS1Y_ORYSA : 20- 22: qpkkr Tf-R kysyr RS1Y_ORYSA : 85- 88: aepvr ThlR nmiiv RT19_ARATH : 58- 61: sfngv TeaR vmtnk RT19_ARATH : 68- 70: mtnkv Tg-R srgyg RT19_ARATH : 181- 184: iyngk ThvR ckite RT19_ARATH : 202- 203: gefaf T--R kvkkh RT19_MARPO : 2- 3: m T--R siwkg RT19_MARPO : 69- 70: gefas T--R ktssl RT19_PETHY : 54- 57: iyngk TfvR ckite RT19_PETHY : 75- 76: gefaf T--R krrps RT19_PETHY : 75- 78: gefaf TrkR rpsrt RT19_PROWI : 68- 69: gefav T--R kkpih Number of patterns evaluated by Pratt:7 Total running time: 1 seconds