------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file RIBOSOMAL_S18 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S18.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS18_BACST 77 RS18_BACSU 78 RS18_CHLTR 77 RS18_CYAPA 71 RS18_ECOLI 74 RS18_EPIVI 92 RS18_EUGGR 64 RS18_HAEIN 74 RS18_MAIZE 170 RS18_MARPO 75 RS18_ORYSA 163 RS18_THETH 32 RS18_TOBAC 101 Pratt run started at Thu Feb 6 21:06:10 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 13( 13) K-x(2)-R-x(1,3)-L-x(0,2)-L 2: 12.0102 15( 13) K-x(2)-R-x(2,3)-L 3: 11.5102 17( 13) K-x(0,2)-R-x(4)-L 4: 11.5102 13( 13) A-x(0,2)-R-x(4)-L 5: 11.0102 27( 13) K-x(2,3)-R-x(1,3)-L 6: 10.5102 24( 13) R-x(1,3)-R-x(2,4)-K 7: 10.5102 27( 13) K-x(0,2)-R-x(1,3)-L 8: 10.5102 19( 13) L-x(2,4)-K-x(0,2)-R 9: 10.5102 23( 13) R-x(1,3)-L-x(0,2)-L 10: 8.3401 13( 13) K-x-A 11: 8.3401 32( 13) R-R 12: 8.3401 19( 13) L-x-R 13: 7.8401 19( 13) K-x(1,2)-A 14: 7.8401 16( 13) K-x(0,1)-A 15: 7.8401 26( 13) L-x(0,1)-R 16: 7.8401 43( 13) R-x(1,2)-R 17: 7.8401 45( 13) R-x(0,1)-R 18: 7.8401 40( 13) R-x(2,3)-L 19: 7.8401 33( 13) K-x(3,4)-R 20: 7.3401 42( 13) R-x(1,3)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.4982 14( 13) K-x(0,2)-R-x-[ILMV]-[AGS]-x-L B 2: 16.3811 13( 13) K-x(0,1)-A-[KR]-x(2)-[AGS]-[FIL] C 3: 15.5864 17( 13) L-x(2,4)-K-x(0,2)-R-x(2)-[AGQST]-x-[AL] D 4: 15.1810 14( 13) K-[QR]-x-R-x(2,3)-L E 5: 14.6802 13( 13) K-x(2)-R-x(1,3)-L-x(0,2)-L F 6: 13.7455 13( 13) A-x(0,2)-R-x(2)-[AGQS]-x-L G 7: 13.2646 19( 13) K-x(2,3)-R-x(1,3)-L-x-[AILP] H 8: 12.7646 17( 13) K-x(0,2)-R-x(1,3)-L-x-[AILP] I 9: 10.5966 16( 13) L-x-R-x-[FILV] J 10: 10.5102 24( 13) R-x(1,3)-R-x(2,4)-K K 11: 10.5102 23( 13) R-x(1,3)-L-x(0,2)-L L 12: 10.0966 17( 13) L-x(0,1)-R-x-[FILV] M 13: 8.3401 13( 13) K-x-A N 14: 8.3401 32( 13) R-R O 15: 7.8401 19( 13) K-x(1,2)-A P 16: 7.8401 43( 13) R-x(1,2)-R Q 17: 7.8401 45( 13) R-x(0,1)-R R 18: 7.8401 40( 13) R-x(2,3)-L S 19: 7.8401 33( 13) K-x(3,4)-R T 20: 7.3401 42( 13) R-x(1,3)-K Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.4982 14( 13) K-x(0,2)-R-x-[ILMV]-[AGS]-x-L Occurences: 14(13) RS18_BACST : 63- 71: ltvai KraRqMAlL pyvad RS18_BACSU : 64- 72: ltaai KraRqMAlL pyvsg RS18_CHLTR : 67- 75: laqav KraRhVGlL ls RS18_CYAPA : 56- 64: vtkai KqaRvLAlL pfvnr RS18_ECOLI : 59- 67: larai KraRyLSlL pytdr RS18_EPIVI : 60- 68: itiai KqaRiLSlL pfinn RS18_EUGGR : 48- 56: lrksv KqaRyLGlL pfktk RS18_HAEIN : 59- 67: larai KraRyLAlL pytdn RS18_MAIZE : 101- 109: itlai KqaRiLSfL pfrny RS18_MARPO : 60- 68: ltiai KraRvLAlL pflnn RS18_ORYSA : 94- 102: itlai KqaRiLSfL pfrny RS18_THETH : 4- 12: aqk KpkRnLSaL krhrq RS18_THETH : 6- 12: aqkkp K--RnLSaL krhrq RS18_TOBAC : 67- 75: itlai KqaRiLSlL pflnn B 2: 16.3811 13( 13) K-x(0,1)-A-[KR]-x(2)-[AGS]-[FIL] Occurences: 13(13) RS18_BACST : 63- 70: ltvai KrARqmAL lpyva RS18_BACSU : 64- 71: ltaai KrARqmAL lpyvs RS18_CHLTR : 67- 74: laqav KrARhvGL lls RS18_CYAPA : 56- 63: vtkai KqARvlAL lpfvn RS18_ECOLI : 59- 66: larai KrARylSL lpytd RS18_EPIVI : 60- 67: itiai KqARilSL lpfin RS18_EUGGR : 48- 55: lrksv KqARylGL lpfkt RS18_HAEIN : 59- 66: larai KrARylAL lpytd RS18_MAIZE : 101- 108: itlai KqARilSF lpfrn RS18_MARPO : 60- 67: ltiai KrARvlAL lpfln RS18_ORYSA : 94- 101: itlai KqARilSF lpfrn RS18_THETH : 26- 32: rrlrn K-AKkxAI RS18_TOBAC : 67- 74: itlai KqARilSL lpfln C 3: 15.5864 17( 13) L-x(2,4)-K-x(0,2)-R-x(2)-[AGQST]-x-[AL] Occurences: 17(13) RS18_BACST : 58- 69: kyqrk LtvaiK--RarQmA llpyv RS18_BACST : 58- 71: kyqrk LtvaiKraRqmAlL pyvad RS18_BACSU : 59- 70: kyqrk LtaaiK--RarQmA llpyv RS18_BACSU : 59- 72: kyqrk LtaaiKraRqmAlL pyvsg RS18_CHLTR : 62- 75: rfqal LaqavKraRhvGlL ls RS18_CYAPA : 43- 54: rrvtg Lta--KqqRavTkA ikqar RS18_ECOLI : 54- 67: kyqrq LaraiKraRylSlL pytdr RS18_EPIVI : 47- 58: rrvnr Ltl--KqqRliTiA ikqar RS18_EUGGR : 43- 56: kqhrl LrksvKqaRylGlL pfktk RS18_HAEIN : 54- 67: kyqrq LaraiKraRylAlL pytdn RS18_MAIZE : 88- 99: rrinr Ltl--KqqRliTlA ikqar RS18_MAIZE : 98- 109: qrlit Lai--KqaRilSfL pfrny RS18_MARPO : 47- 58: rrmnr Lts--KqqRllTiA ikrar RS18_MARPO : 55- 68: kqqrl LtiaiKraRvlAlL pflnn RS18_ORYSA : 81- 92: rrinr Ltl--KqqRliTlA ikqar RS18_ORYSA : 91- 102: qrlit Lai--KqaRilSfL pfrny RS18_THETH : 9- 19: kpkrn Lsal-K--RhrQsL krrlr RS18_TOBAC : 54- 65: rrvnr Ltl--KqqRliTlA ikqar RS18_TOBAC : 64- 75: qrlit Lai--KqaRilSlL pflnn D 4: 15.1810 14( 13) K-[QR]-x-R-x(2,3)-L Occurences: 14(13) RS18_BACST : 63- 70: ltvai KRaRqmaL lpyva RS18_BACSU : 64- 71: ltaai KRaRqmaL lpyvs RS18_CHLTR : 67- 74: laqav KRaRhvgL lls RS18_CYAPA : 56- 63: vtkai KQaRvlaL lpfvn RS18_ECOLI : 59- 66: larai KRaRylsL lpytd RS18_EPIVI : 60- 67: itiai KQaRilsL lpfin RS18_EUGGR : 48- 55: lrksv KQaRylgL lpfkt RS18_HAEIN : 59- 66: larai KRaRylaL lpytd RS18_MAIZE : 91- 98: nrltl KQqRlitL aikqa RS18_MARPO : 60- 67: ltiai KRaRvlaL lpfln RS18_ORYSA : 84- 91: nrltl KQqRlitL aikqa RS18_THETH : 13- 19: nlsal KRhRqs-L krrlr RS18_TOBAC : 57- 64: nrltl KQqRlitL aikqa RS18_TOBAC : 67- 74: itlai KQaRilsL lpfln E 5: 14.6802 13( 13) K-x(2)-R-x(1,3)-L-x(0,2)-L Occurences: 13(13) RS18_BACST : 63- 71: ltvai KraRqmaL--L pyvad RS18_BACSU : 64- 72: ltaai KraRqmaL--L pyvsg RS18_CHLTR : 67- 75: laqav KraRhvgL--L ls RS18_CHLTR : 67- 76: laqav KraRhvgLl-L s RS18_CYAPA : 56- 64: vtkai KqaRvlaL--L pfvnr RS18_CYAPA : 56- 63: vtkai KqaRv--La-L lpfvn RS18_CYAPA : 56- 64: vtkai KqaRv--LalL pfvnr RS18_ECOLI : 59- 67: larai KraRylsL--L pytdr RS18_ECOLI : 59- 66: larai KraRy--Ls-L lpytd RS18_ECOLI : 59- 67: larai KraRy--LslL pytdr RS18_EPIVI : 60- 68: itiai KqaRilsL--L pfinn RS18_EPIVI : 60- 67: itiai KqaRi--Ls-L lpfin RS18_EPIVI : 60- 68: itiai KqaRi--LslL pfinn RS18_EUGGR : 48- 56: lrksv KqaRylgL--L pfktk RS18_EUGGR : 48- 55: lrksv KqaRy--Lg-L lpfkt RS18_EUGGR : 48- 56: lrksv KqaRy--LglL pfktk RS18_HAEIN : 59- 67: larai KraRylaL--L pytdn RS18_HAEIN : 59- 66: larai KraRy--La-L lpytd RS18_HAEIN : 59- 67: larai KraRy--LalL pytdn RS18_MAIZE : 101- 109: itlai KqaRi--LsfL pfrny RS18_MARPO : 60- 68: ltiai KraRvlaL--L pflnn RS18_MARPO : 60- 67: ltiai KraRv--La-L lpfln RS18_MARPO : 60- 68: ltiai KraRv--LalL pflnn RS18_ORYSA : 94- 102: itlai KqaRi--LsfL pfrny RS18_THETH : 4- 12: aqk KpkRn--LsaL krhrq RS18_TOBAC : 67- 75: itlai KqaRilsL--L pflnn RS18_TOBAC : 67- 74: itlai KqaRi--Ls-L lpfln RS18_TOBAC : 67- 75: itlai KqaRi--LslL pflnn F 6: 13.7455 13( 13) A-x(0,2)-R-x(2)-[AGQS]-x-L Occurences: 13(13) RS18_BACST : 65- 71: vaikr A--RqmAlL pyvad RS18_BACSU : 66- 72: aaikr A--RqmAlL pyvsg RS18_CHLTR : 69- 75: qavkr A--RhvGlL ls RS18_CYAPA : 58- 64: kaikq A--RvlAlL pfvnr RS18_ECOLI : 61- 67: raikr A--RylSlL pytdr RS18_EPIVI : 62- 68: iaikq A--RilSlL pfinn RS18_EUGGR : 50- 56: ksvkq A--RylGlL pfktk RS18_HAEIN : 61- 67: raikr A--RylAlL pytdn RS18_MAIZE : 103- 109: laikq A--RilSfL pfrny RS18_MARPO : 62- 68: iaikr A--RvlAlL pflnn RS18_ORYSA : 96- 102: laikq A--RilSfL pfrny RS18_THETH : 11- 19: krnls AlkRhrQsL krrlr RS18_TOBAC : 69- 75: laikq A--RilSlL pflnn G 7: 13.2646 19( 13) K-x(2,3)-R-x(1,3)-L-x-[AILP] Occurences: 19(13) RS18_BACST : 63- 72: ltvai Kra-RqmaLlP yvade RS18_BACSU : 54- 61: tgtna Kyq-Rk--LtA aikra RS18_BACSU : 64- 73: ltaai Kra-RqmaLlP yvsge RS18_CHLTR : 67- 76: laqav Kra-RhvgLlL s RS18_CYAPA : 56- 63: vtkai Kqa-Rv--LaL lpfvn RS18_CYAPA : 56- 65: vtkai Kqa-RvlaLlP fvnre RS18_ECOLI : 59- 66: larai Kra-Ry--LsL lpytd RS18_ECOLI : 59- 68: larai Kra-RylsLlP ytdrh RS18_EPIVI : 5- 14: mykf KrsfRrr-LsP igsgn RS18_EPIVI : 60- 67: itiai Kqa-Ri--LsL lpfin RS18_EPIVI : 60- 69: itiai Kqa-RilsLlP finne RS18_EUGGR : 48- 55: lrksv Kqa-Ry--LgL lpfkt RS18_EUGGR : 48- 57: lrksv Kqa-RylgLlP fktkd RS18_HAEIN : 59- 66: larai Kra-Ry--LaL lpytd RS18_HAEIN : 59- 68: larai Kra-RylaLlP ytdnh RS18_MAIZE : 91- 100: nrltl Kqq-RlitLaI kqari RS18_MARPO : 50- 57: nrlts Kqq-Rl--LtI aikra RS18_MARPO : 60- 67: ltiai Kra-Rv--LaL lpfln RS18_MARPO : 60- 69: ltiai Kra-RvlaLlP flnne RS18_ORYSA : 84- 93: nrltl Kqq-RlitLaI kqari RS18_THETH : 3- 11: aq KkpkRn--LsA lkrhr RS18_THETH : 4- 11: aqk Kpk-Rn--LsA lkrhr RS18_TOBAC : 12- 21: pflkf KrsfRrr-LpP iqsgd RS18_TOBAC : 57- 66: nrltl Kqq-RlitLaI kqari RS18_TOBAC : 67- 74: itlai Kqa-Ri--LsL lpfln RS18_TOBAC : 67- 76: itlai Kqa-RilsLlP flnne H 8: 12.7646 17( 13) K-x(0,2)-R-x(1,3)-L-x-[AILP] Occurences: 17(13) RS18_BACST : 63- 72: ltvai KraRqmaLlP yvade RS18_BACSU : 54- 61: tgtna KyqRk--LtA aikra RS18_BACSU : 64- 73: ltaai KraRqmaLlP yvsge RS18_CHLTR : 67- 76: laqav KraRhvgLlL s RS18_CYAPA : 56- 63: vtkai KqaRv--LaL lpfvn RS18_CYAPA : 56- 65: vtkai KqaRvlaLlP fvnre RS18_ECOLI : 59- 66: larai KraRy--LsL lpytd RS18_ECOLI : 59- 66: larai K--RaryLsL lpytd RS18_ECOLI : 59- 68: larai KraRylsLlP ytdrh RS18_EPIVI : 60- 67: itiai KqaRi--LsL lpfin RS18_EPIVI : 60- 69: itiai KqaRilsLlP finne RS18_EUGGR : 48- 55: lrksv KqaRy--LgL lpfkt RS18_EUGGR : 48- 57: lrksv KqaRylgLlP fktkd RS18_HAEIN : 59- 66: larai KraRy--LaL lpytd RS18_HAEIN : 59- 66: larai K--RaryLaL lpytd RS18_HAEIN : 59- 68: larai KraRylaLlP ytdnh RS18_MAIZE : 91- 100: nrltl KqqRlitLaI kqari RS18_MARPO : 50- 57: nrlts KqqRl--LtI aikra RS18_MARPO : 60- 67: ltiai KraRv--LaL lpfln RS18_MARPO : 60- 67: ltiai K--RarvLaL lpfln RS18_MARPO : 60- 69: ltiai KraRvlaLlP flnne RS18_ORYSA : 84- 93: nrltl KqqRlitLaI kqari RS18_THETH : 4- 11: aqk KpkRn--LsA lkrhr RS18_THETH : 6- 11: aqkkp K--Rn--LsA lkrhr RS18_TOBAC : 57- 66: nrltl KqqRlitLaI kqari RS18_TOBAC : 67- 74: itlai KqaRi--LsL lpfln RS18_TOBAC : 67- 76: itlai KqaRilsLlP flnne I 9: 10.5966 16( 13) L-x-R-x-[FILV] Occurences: 16(13) RS18_BACST : 43- 47: ergki LpRrV tgtsa RS18_BACSU : 44- 48: ergki LpRrV tgtna RS18_CHLTR : 36- 40: kdvvt LkRfI tergk RS18_CHLTR : 47- 51: ergki LpRrI tgvss RS18_CYAPA : 24- 28: yqdve LlRtF itdqg RS18_CYAPA : 36- 40: dqgki LpRrV tglta RS18_ECOLI : 54- 58: kyqrq LaRaI krary RS18_EPIVI : 40- 44: eqgki LsRrV nrltl RS18_EUGGR : 15- 19: knvni LrRfI nfqgk RS18_HAEIN : 54- 58: kyqrq LaRaI krary RS18_MAIZE : 81- 85: eqgki LsRrI nrltl RS18_MARPO : 28- 32: yknis LlRrF vseqg RS18_MARPO : 29- 33: knisl LrRfV seqgk RS18_ORYSA : 74- 78: eqgki LsRrI nrltl RS18_THETH : 19- 23: rhrqs LkRrL rnkak RS18_TOBAC : 47- 51: eqgki LsRrV nrltl J 10: 10.5102 24( 13) R-x(1,3)-R-x(2,4)-K Occurences: 24(13) RS18_BACST : 3- 12: ag RkggRgkrrK vcyft RS18_BACSU : 4- 13: agg RrggRakrrK vcyft RS18_BACSU : 5- 13: aggr Rgg-RakrrK vcyft RS18_CHLTR : 10- 16: vhneh Rrk-Rfa--K kcpfv RS18_CHLTR : 10- 17: vhneh Rrk-Rfak-K cpfvs RS18_CHLTR : 11- 16: hnehr Rk--Rfa--K kcpfv RS18_CHLTR : 11- 17: hnehr Rk--Rfak-K cpfvs RS18_CYAPA : 5- 12: msvy Rr--RlsplK pnqvi RS18_ECOLI : 2- 8: a Ryf-Rrr--K fcrft RS18_ECOLI : 52- 59: rakyq RqlaRai--K raryl RS18_EPIVI : 42- 50: gkils RrvnRltl-K qqrli RS18_EPIVI : 43- 50: kilsr Rvn-Rltl-K qqrli RS18_EUGGR : 41- 48: tykqh Rll-Rksv-K qaryl RS18_HAEIN : 2- 8: a Ryf-Rrr--K fcrft RS18_HAEIN : 52- 59: rakyq RqlaRai--K raryl RS18_MAIZE : 83- 91: gkils RrinRltl-K qqrli RS18_MAIZE : 84- 91: kilsr Rin-Rltl-K qqrli RS18_MARPO : 42- 50: gkils RrmnRlts-K qqrll RS18_MARPO : 43- 50: kilsr Rmn-Rlts-K qqrll RS18_ORYSA : 76- 84: gkils RrinRltl-K qqrli RS18_ORYSA : 77- 84: kilsr Rin-Rltl-K qqrli RS18_THETH : 14- 20: lsalk Rh--Rqsl-K rrlrn RS18_THETH : 21- 28: rqslk Rrl-Rnka-K kxai RS18_THETH : 21- 29: rqslk Rrl-RnkakK xai RS18_THETH : 22- 28: qslkr Rl--Rnka-K kxai RS18_THETH : 22- 29: qslkr Rl--RnkakK xai RS18_TOBAC : 49- 57: gkils RrvnRltl-K qqrli RS18_TOBAC : 50- 57: kilsr Rvn-Rltl-K qqrli K 11: 10.5102 23( 13) R-x(1,3)-L-x(0,2)-L Occurences: 23(13) RS18_BACST : 66- 71: aikra RqmaL--L pyvad RS18_BACSU : 67- 72: aikra RqmaL--L pyvsg RS18_CHLTR : 57- 62: tgvss RfqaL--L aqavk RS18_CHLTR : 70- 75: avkra RhvgL--L ls RS18_CHLTR : 70- 76: avkra RhvgLl-L s RS18_CYAPA : 5- 11: msvy Rrr-LspL kpnqv RS18_CYAPA : 6- 11: msvyr Rr--LspL kpnqv RS18_CYAPA : 59- 64: aikqa RvlaL--L pfvnr RS18_CYAPA : 59- 63: aikqa Rv--La-L lpfvn RS18_CYAPA : 59- 64: aikqa Rv--LalL pfvnr RS18_ECOLI : 60- 66: araik RaryLs-L lpytd RS18_ECOLI : 60- 67: araik RaryLslL pytdr RS18_ECOLI : 62- 67: aikra RylsL--L pytdr RS18_ECOLI : 62- 66: aikra Ry--Ls-L lpytd RS18_ECOLI : 62- 67: aikra Ry--LslL pytdr RS18_EPIVI : 43- 49: kilsr RvnrLt-L kqqrl RS18_EPIVI : 63- 68: aikqa RilsL--L pfinn RS18_EPIVI : 63- 67: aikqa Ri--Ls-L lpfin RS18_EPIVI : 63- 68: aikqa Ri--LslL pfinn RS18_EUGGR : 51- 56: svkqa RylgL--L pfktk RS18_EUGGR : 51- 55: svkqa Ry--Lg-L lpfkt RS18_EUGGR : 51- 56: svkqa Ry--LglL pfktk RS18_HAEIN : 60- 66: araik RaryLa-L lpytd RS18_HAEIN : 60- 67: araik RaryLalL pytdn RS18_HAEIN : 62- 67: aikra RylaL--L pytdn RS18_HAEIN : 62- 66: aikra Ry--La-L lpytd RS18_HAEIN : 62- 67: aikra Ry--LalL pytdn RS18_MAIZE : 84- 90: kilsr RinrLt-L kqqrl RS18_MAIZE : 104- 109: aikqa Ri--LsfL pfrny RS18_MARPO : 61- 67: tiaik RarvLa-L lpfln RS18_MARPO : 61- 68: tiaik RarvLalL pflnn RS18_MARPO : 63- 68: aikra RvlaL--L pflnn RS18_MARPO : 63- 67: aikra Rv--La-L lpfln RS18_MARPO : 63- 68: aikra Rv--LalL pflnn RS18_ORYSA : 77- 83: kilsr RinrLt-L kqqrl RS18_ORYSA : 97- 102: aikqa Ri--LsfL pfrny RS18_THETH : 7- 12: qkkpk Rn--LsaL krhrq RS18_TOBAC : 50- 56: kilsr RvnrLt-L kqqrl RS18_TOBAC : 70- 75: aikqa RilsL--L pflnn RS18_TOBAC : 70- 74: aikqa Ri--Ls-L lpfln RS18_TOBAC : 70- 75: aikqa Ri--LslL pflnn L 12: 10.0966 17( 13) L-x(0,1)-R-x-[FILV] Occurences: 17(13) RS18_BACST : 43- 47: ergki LpRrV tgtsa RS18_BACSU : 44- 48: ergki LpRrV tgtna RS18_CHLTR : 36- 40: kdvvt LkRfI tergk RS18_CHLTR : 47- 51: ergki LpRrI tgvss RS18_CYAPA : 24- 28: yqdve LlRtF itdqg RS18_CYAPA : 25- 28: qdvel L-RtF itdqg RS18_CYAPA : 36- 40: dqgki LpRrV tglta RS18_ECOLI : 54- 58: kyqrq LaRaI krary RS18_EPIVI : 40- 44: eqgki LsRrV nrltl RS18_EUGGR : 15- 18: knvni L-RrF infqg RS18_EUGGR : 15- 19: knvni LrRfI nfqgk RS18_HAEIN : 54- 58: kyqrq LaRaI krary RS18_MAIZE : 81- 85: eqgki LsRrI nrltl RS18_MARPO : 28- 32: yknis LlRrF vseqg RS18_MARPO : 29- 32: knisl L-RrF vseqg RS18_MARPO : 29- 33: knisl LrRfV seqgk RS18_ORYSA : 74- 78: eqgki LsRrI nrltl RS18_THETH : 19- 23: rhrqs LkRrL rnkak RS18_TOBAC : 47- 51: eqgki LsRrV nrltl M 13: 8.3401 13( 13) K-x-A Occurences: 13(13) RS18_BACST : 63- 65: ltvai KrA rqmal RS18_BACSU : 64- 66: ltaai KrA rqmal RS18_CHLTR : 67- 69: laqav KrA rhvgl RS18_CYAPA : 56- 58: vtkai KqA rvlal RS18_ECOLI : 59- 61: larai KrA rylsl RS18_EPIVI : 60- 62: itiai KqA rilsl RS18_EUGGR : 48- 50: lrksv KqA rylgl RS18_HAEIN : 59- 61: larai KrA rylal RS18_MAIZE : 101- 103: itlai KqA rilsf RS18_MARPO : 60- 62: ltiai KrA rvlal RS18_ORYSA : 94- 96: itlai KqA rilsf RS18_THETH : 29- 31: rnkak KxA i RS18_TOBAC : 67- 69: itlai KqA rilsl N 14: 8.3401 32( 13) R-R Occurences: 32(13) RS18_BACST : 10- 11: ggrgk RR kvcyf RS18_BACST : 45- 46: gkilp RR vtgts RS18_BACSU : 4- 5: agg RR ggrak RS18_BACSU : 11- 12: ggrak RR kvcyf RS18_BACSU : 46- 47: gkilp RR vtgtn RS18_CHLTR : 10- 11: vhneh RR krfak RS18_CHLTR : 49- 50: gkilp RR itgvs RS18_CYAPA : 5- 6: msvy RR rlspl RS18_CYAPA : 6- 7: msvyr RR lsplk RS18_CYAPA : 38- 39: gkilp RR vtglt RS18_ECOLI : 5- 6: aryf RR rkfcr RS18_ECOLI : 6- 7: aryfr RR kfcrf RS18_EPIVI : 9- 10: fkrsf RR rlspi RS18_EPIVI : 10- 11: krsfr RR lspig RS18_EPIVI : 42- 43: gkils RR vnrlt RS18_EUGGR : 16- 17: nvnil RR finfq RS18_HAEIN : 5- 6: aryf RR rkfcr RS18_HAEIN : 6- 7: aryfr RR kfcrf RS18_MAIZE : 51- 52: skqpf RR rsrig RS18_MAIZE : 52- 53: kqpfr RR srigp RS18_MAIZE : 83- 84: gkils RR inrlt RS18_MARPO : 9- 10: skrss RR rmppi RS18_MARPO : 10- 11: krssr RR mppir RS18_MARPO : 30- 31: nisll RR fvseq RS18_MARPO : 42- 43: gkils RR mnrlt RS18_ORYSA : 44- 45: pkqpf RR rprig RS18_ORYSA : 45- 46: kqpfr RR prigp RS18_ORYSA : 76- 77: gkils RR inrlt RS18_THETH : 21- 22: rqslk RR lrnka RS18_TOBAC : 16- 17: fkrsf RR rlppi RS18_TOBAC : 17- 18: krsfr RR lppiq RS18_TOBAC : 49- 50: gkils RR vnrlt O 15: 7.8401 19( 13) K-x(1,2)-A Occurences: 19(13) RS18_BACST : 63- 65: ltvai Kr-A rqmal RS18_BACSU : 58- 61: akyqr KltA aikra RS18_BACSU : 64- 66: ltaai Kr-A rqmal RS18_CHLTR : 12- 15: nehrr KrfA kkcpf RS18_CHLTR : 67- 69: laqav Kr-A rhvgl RS18_CYAPA : 56- 58: vtkai Kq-A rvlal RS18_ECOLI : 23- 26: qeidy KdiA tlkny RS18_ECOLI : 59- 61: larai Kr-A rylsl RS18_EPIVI : 60- 62: itiai Kq-A rilsl RS18_EUGGR : 2- 5: m KypA lidyk RS18_EUGGR : 48- 50: lrksv Kq-A rylgl RS18_HAEIN : 23- 26: veidy KdiA tlkny RS18_HAEIN : 59- 61: larai Kr-A rylal RS18_MAIZE : 101- 103: itlai Kq-A rilsf RS18_MARPO : 60- 62: ltiai Kr-A rvlal RS18_ORYSA : 94- 96: itlai Kq-A rilsf RS18_THETH : 28- 31: lrnka KkxA i RS18_THETH : 29- 31: rnkak Kx-A i RS18_TOBAC : 67- 69: itlai Kq-A rilsl P 16: 7.8401 43( 13) R-x(1,2)-R Occurences: 43(13) RS18_BACST : 7- 10: grkgg RgkR rkvcy RS18_BACST : 64- 66: tvaik Ra-R qmall RS18_BACSU : 5- 8: aggr RggR akrrk RS18_BACSU : 8- 11: grrgg RakR rkvcy RS18_BACSU : 65- 67: taaik Ra-R qmall RS18_CHLTR : 10- 13: vhneh RrkR fakkc RS18_CHLTR : 11- 13: hnehr Rk-R fakkc RS18_CHLTR : 68- 70: aqavk Ra-R hvgll RS18_CYAPA : 5- 7: msvy Rr-R lsplk RS18_ECOLI : 2- 5: a RyfR rrkfc RS18_ECOLI : 5- 7: aryf Rr-R kfcrf RS18_ECOLI : 60- 62: araik Ra-R ylsll RS18_EPIVI : 6- 9: mykfk RsfR rrlsp RS18_EPIVI : 9- 11: fkrsf Rr-R lspig RS18_EPIVI : 43- 46: kilsr RvnR ltlkq RS18_EUGGR : 41- 44: tykqh RllR ksvkq RS18_HAEIN : 2- 5: a RyfR rrkfc RS18_HAEIN : 5- 7: aryf Rr-R kfcrf RS18_HAEIN : 60- 62: araik Ra-R ylall RS18_MAIZE : 51- 53: skqpf Rr-R srigp RS18_MAIZE : 52- 55: kqpfr RrsR igpgd RS18_MAIZE : 53- 55: qpfrr Rs-R igpgd RS18_MAIZE : 84- 87: kilsr RinR ltlkq RS18_MAIZE : 132- 134: iitgp Rh-R knrhi RS18_MAIZE : 134- 137: tgprh RknR hipql RS18_MAIZE : 150- 153: kfnsn RnlR nsnqn RS18_MARPO : 6- 9: mnksk RssR rrmpp RS18_MARPO : 9- 11: skrss Rr-R mppir RS18_MARPO : 43- 46: kilsr RmnR ltskq RS18_MARPO : 61- 63: tiaik Ra-R vlall RS18_ORYSA : 44- 46: pkqpf Rr-R prigp RS18_ORYSA : 45- 48: kqpfr RrpR igpgd RS18_ORYSA : 46- 48: qpfrr Rp-R igpgd RS18_ORYSA : 77- 80: kilsr RinR ltlkq RS18_ORYSA : 125- 127: iitgp Rp-R knrhi RS18_ORYSA : 127- 130: tgprp RknR hippl RS18_ORYSA : 143- 146: kfnsn RnlR nsnqt RS18_THETH : 14- 16: lsalk Rh-R qslkr RS18_THETH : 21- 24: rqslk RrlR nkakk RS18_THETH : 22- 24: qslkr Rl-R nkakk RS18_TOBAC : 13- 16: flkfk RsfR rrlpp RS18_TOBAC : 16- 18: fkrsf Rr-R lppiq RS18_TOBAC : 50- 53: kilsr RvnR ltlkq Q 17: 7.8401 45( 13) R-x(0,1)-R Occurences: 45(13) RS18_BACST : 10- 11: ggrgk R-R kvcyf RS18_BACST : 45- 46: gkilp R-R vtgts RS18_BACST : 64- 66: tvaik RaR qmall RS18_BACSU : 4- 5: agg R-R ggrak RS18_BACSU : 11- 12: ggrak R-R kvcyf RS18_BACSU : 46- 47: gkilp R-R vtgtn RS18_BACSU : 65- 67: taaik RaR qmall RS18_CHLTR : 10- 11: vhneh R-R krfak RS18_CHLTR : 11- 13: hnehr RkR fakkc RS18_CHLTR : 49- 50: gkilp R-R itgvs RS18_CHLTR : 68- 70: aqavk RaR hvgll RS18_CYAPA : 5- 6: msvy R-R rlspl RS18_CYAPA : 5- 7: msvy RrR lsplk RS18_CYAPA : 6- 7: msvyr R-R lsplk RS18_CYAPA : 38- 39: gkilp R-R vtglt RS18_ECOLI : 5- 6: aryf R-R rkfcr RS18_ECOLI : 5- 7: aryf RrR kfcrf RS18_ECOLI : 6- 7: aryfr R-R kfcrf RS18_ECOLI : 60- 62: araik RaR ylsll RS18_EPIVI : 9- 10: fkrsf R-R rlspi RS18_EPIVI : 9- 11: fkrsf RrR lspig RS18_EPIVI : 10- 11: krsfr R-R lspig RS18_EPIVI : 42- 43: gkils R-R vnrlt RS18_EUGGR : 16- 17: nvnil R-R finfq RS18_HAEIN : 5- 6: aryf R-R rkfcr RS18_HAEIN : 5- 7: aryf RrR kfcrf RS18_HAEIN : 6- 7: aryfr R-R kfcrf RS18_HAEIN : 60- 62: araik RaR ylall RS18_MAIZE : 51- 52: skqpf R-R rsrig RS18_MAIZE : 51- 53: skqpf RrR srigp RS18_MAIZE : 52- 53: kqpfr R-R srigp RS18_MAIZE : 53- 55: qpfrr RsR igpgd RS18_MAIZE : 83- 84: gkils R-R inrlt RS18_MAIZE : 132- 134: iitgp RhR knrhi RS18_MARPO : 9- 10: skrss R-R rmppi RS18_MARPO : 9- 11: skrss RrR mppir RS18_MARPO : 10- 11: krssr R-R mppir RS18_MARPO : 30- 31: nisll R-R fvseq RS18_MARPO : 42- 43: gkils R-R mnrlt RS18_MARPO : 61- 63: tiaik RaR vlall RS18_ORYSA : 44- 45: pkqpf R-R rprig RS18_ORYSA : 44- 46: pkqpf RrR prigp RS18_ORYSA : 45- 46: kqpfr R-R prigp RS18_ORYSA : 46- 48: qpfrr RpR igpgd RS18_ORYSA : 76- 77: gkils R-R inrlt RS18_ORYSA : 125- 127: iitgp RpR knrhi RS18_THETH : 14- 16: lsalk RhR qslkr RS18_THETH : 21- 22: rqslk R-R lrnka RS18_THETH : 22- 24: qslkr RlR nkakk RS18_TOBAC : 16- 17: fkrsf R-R rlppi RS18_TOBAC : 16- 18: fkrsf RrR lppiq RS18_TOBAC : 17- 18: krsfr R-R lppiq RS18_TOBAC : 49- 50: gkils R-R vnrlt R 18: 7.8401 40( 13) R-x(2,3)-L Occurences: 40(13) RS18_BACST : 39- 43: kfise RgkiL prrvt RS18_BACST : 66- 70: aikra RqmaL lpyva RS18_BACSU : 40- 44: kfvse RgkiL prrvt RS18_BACSU : 67- 71: aikra RqmaL lpyvs RS18_CHLTR : 43- 47: rfite RgkiL prrit RS18_CHLTR : 57- 61: tgvss RfqaL laqav RS18_CHLTR : 70- 74: avkra RhvgL lls RS18_CYAPA : 5- 8: msvy Rrr-L splkp RS18_CYAPA : 7- 11: svyrr RlspL kpnqv RS18_CYAPA : 39- 43: kilpr RvtgL takqq RS18_CYAPA : 59- 63: aikqa RvlaL lpfvn RS18_ECOLI : 60- 64: araik RaryL sllpy RS18_ECOLI : 62- 66: aikra RylsL lpytd RS18_EPIVI : 9- 12: fkrsf Rrr-L spigs RS18_EPIVI : 24- 28: nliyy RnmsL isrfi RS18_EPIVI : 43- 47: kilsr RvnrL tlkqq RS18_EPIVI : 46- 49: srrvn Rlt-L kqqrl RS18_EPIVI : 63- 67: aikqa RilsL lpfin RS18_EUGGR : 51- 55: svkqa RylgL lpfkt RS18_HAEIN : 60- 64: araik RaryL allpy RS18_HAEIN : 62- 66: aikra RylaL lpytd RS18_MAIZE : 65- 69: dridy RnmsL inrfi RS18_MAIZE : 84- 88: kilsr RinrL tlkqq RS18_MAIZE : 87- 90: srrin Rlt-L kqqrl RS18_MAIZE : 94- 98: tlkqq RlitL aikqa RS18_MARPO : 43- 47: kilsr RmnrL tskqq RS18_MARPO : 61- 65: tiaik RarvL allpf RS18_MARPO : 63- 67: aikra RvlaL lpfln RS18_ORYSA : 58- 62: dridy RnmsL inrfi RS18_ORYSA : 77- 81: kilsr RinrL tlkqq RS18_ORYSA : 80- 83: srrin Rlt-L kqqrl RS18_ORYSA : 87- 91: tlkqq RlitL aikqa RS18_THETH : 16- 19: alkrh Rqs-L krrlr RS18_TOBAC : 6- 9: mdksk Rpf-L kfkrs RS18_TOBAC : 16- 19: fkrsf Rrr-L ppiqs RS18_TOBAC : 31- 35: dridy RnmsL isrfi RS18_TOBAC : 50- 54: kilsr RvnrL tlkqq RS18_TOBAC : 53- 56: srrvn Rlt-L kqqrl RS18_TOBAC : 60- 64: tlkqq RlitL aikqa RS18_TOBAC : 70- 74: aikqa RilsL lpfln S 19: 7.8401 33( 13) K-x(3,4)-R Occurences: 33(13) RS18_BACST : 34- 39: vdllk KfiseR gkilp RS18_BACST : 41- 45: iserg Kilp-R rvtgt RS18_BACST : 41- 46: iserg KilprR vtgts RS18_BACSU : 35- 40: vdllk KfvseR gkilp RS18_BACSU : 42- 46: vserg Kilp-R rvtgt RS18_BACSU : 42- 47: vserg KilprR vtgtn RS18_CHLTR : 45- 49: iterg Kilp-R ritgv RS18_CHLTR : 45- 50: iterg KilprR itgvs RS18_CYAPA : 34- 38: itdqg Kilp-R rvtgl RS18_CYAPA : 34- 39: itdqg KilprR vtglt RS18_ECOLI : 37- 42: itesg KivpsR itgtr RS18_EPIVI : 5- 9: mykf Krsf-R rrlsp RS18_EPIVI : 5- 10: mykf KrsfrR rlspi RS18_EPIVI : 38- 42: iseqg Kils-R rvnrl RS18_EPIVI : 38- 43: iseqg KilsrR vnrlt RS18_EPIVI : 75- 79: finne Kqfe-R iesit RS18_EUGGR : 24- 29: infqg KiipkR lnkpk RS18_HAEIN : 37- 42: isesg KivpsR itgtr RS18_MAIZE : 5- 9: myis Kqpf-R kskqp RS18_MAIZE : 12- 16: pfrks Kqpf-R kskqt RS18_MAIZE : 26- 30: tfhks Kqpf-R kfkqp RS18_MAIZE : 33- 37: pfrkf Kqpf-R kskqp RS18_MAIZE : 40- 44: pfrks Kqpf-R kskqp RS18_MAIZE : 47- 51: pfrks Kqpf-R rrsri RS18_MAIZE : 47- 52: pfrks KqpfrR rsrig RS18_MAIZE : 79- 83: iseqg Kils-R rinrl RS18_MAIZE : 79- 84: iseqg KilsrR inrlt RS18_MAIZE : 145- 150: pqltq KfnsnR nlrns RS18_MARPO : 5- 9: mnks Krss-R rrmpp RS18_MARPO : 5- 10: mnks KrssrR rmppi RS18_MARPO : 38- 42: vseqg Kils-R rmnrl RS18_MARPO : 38- 43: vseqg KilsrR mnrlt RS18_ORYSA : 19- 23: tfhks Kqtf-R kskqt RS18_ORYSA : 26- 30: tfrks Kqtf-R kfkqp RS18_ORYSA : 33- 37: tfrkf Kqpf-R kpkqp RS18_ORYSA : 40- 44: pfrkp Kqpf-R rrpri RS18_ORYSA : 40- 45: pfrkp KqpfrR rprig RS18_ORYSA : 72- 76: iseqg Kils-R rinrl RS18_ORYSA : 72- 77: iseqg KilsrR inrlt RS18_ORYSA : 138- 143: ppltq KfnsnR nlrns RS18_THETH : 3- 7: aq Kkpk-R nlsal RS18_THETH : 20- 24: hrqsl Krrl-R nkakk RS18_TOBAC : 12- 16: pflkf Krsf-R rrlpp RS18_TOBAC : 12- 17: pflkf KrsfrR rlppi RS18_TOBAC : 45- 49: iseqg Kils-R rvnrl RS18_TOBAC : 45- 50: iseqg KilsrR vnrlt RS18_TOBAC : 82- 86: flnne Kqfe-R testa T 20: 7.3401 42( 13) R-x(1,3)-K Occurences: 42(13) RS18_BACST : 7- 9: grkgg Rg--K rrkvc RS18_BACST : 10- 12: ggrgk Rr--K vcyft RS18_BACST : 39- 41: kfise Rg--K ilprr RS18_BACSU : 8- 10: grrgg Ra--K rrkvc RS18_BACSU : 11- 13: ggrak Rr--K vcyft RS18_BACSU : 40- 42: kfvse Rg--K ilprr RS18_CHLTR : 10- 12: vhneh Rr--K rfakk RS18_CHLTR : 13- 16: ehrrk Rfa-K kcpfv RS18_CHLTR : 13- 17: ehrrk RfakK cpfvs RS18_CHLTR : 43- 45: rfite Rg--K ilprr RS18_CYAPA : 49- 53: takqq RavtK aikqa RS18_ECOLI : 5- 8: aryf Rrr-K fcrft RS18_ECOLI : 6- 8: aryfr Rr--K fcrft RS18_ECOLI : 47- 49: ritgt Ra--K yqrql RS18_ECOLI : 56- 59: qrqla Rai-K raryl RS18_EPIVI : 46- 50: srrvn RltlK qqrli RS18_EPIVI : 85- 87: iesit Rv--K gfikk RS18_EUGGR : 29- 32: kiipk Rln-K pklty RS18_EUGGR : 41- 45: tykqh RllrK svkqa RS18_EUGGR : 44- 48: qhrll RksvK qaryl RS18_HAEIN : 5- 8: aryf Rrr-K fcrft RS18_HAEIN : 6- 8: aryfr Rr--K fcrft RS18_HAEIN : 47- 49: ritgt Ra--K yqrql RS18_HAEIN : 56- 59: qrqla Rai-K raryl RS18_MAIZE : 9- 12: skqpf Rks-K qpfrk RS18_MAIZE : 16- 19: skqpf Rks-K qtfhk RS18_MAIZE : 30- 33: skqpf Rkf-K qpfrk RS18_MAIZE : 37- 40: fkqpf Rks-K qpfrk RS18_MAIZE : 44- 47: skqpf Rks-K qpfrr RS18_MAIZE : 87- 91: srrin RltlK qqrli RS18_MAIZE : 132- 135: iitgp Rhr-K nrhip RS18_MARPO : 46- 50: srrmn RltsK qqrll RS18_ORYSA : 23- 26: skqtf Rks-K qtfrk RS18_ORYSA : 30- 33: skqtf Rkf-K qpfrk RS18_ORYSA : 37- 40: fkqpf Rkp-K qpfrr RS18_ORYSA : 80- 84: srrin RltlK qqrli RS18_ORYSA : 125- 128: iitgp Rpr-K nrhip RS18_THETH : 16- 20: alkrh RqslK rrlrn RS18_THETH : 22- 26: qslkr RlrnK akkxa RS18_THETH : 24- 26: lkrrl Rn--K akkxa RS18_THETH : 24- 28: lkrrl RnkaK kxai RS18_TOBAC : 6- 10: mdksk RpflK fkrsf RS18_TOBAC : 53- 57: srrvn RltlK qqrli RS18_TOBAC : 99- 101: tgfka Rn--K Number of patterns evaluated by Pratt:100 Total running time: 0 seconds