------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 22 sequences from file RIBOSOMAL_S17 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 22 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S17.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS11_HUMAN 158 RS11_XENLA 158 RS17_ACYKS 84 RS17_ARATH 149 RS17_BACST 86 RS17_BACSU 86 RS17_CHLTR 83 RS17_CYAPA 88 RS17_ECOLI 83 RS17_HAEIN 84 RS17_HALMA 111 RS17_METVA 109 RS17_MYCCA 85 RS17_PEA 134 RS17_THEMA 107 RS17_THETH 104 RS1W_ARATH 159 RS1X_ARATH 160 RS1X_DUNTE 157 RS1X_MAIZE 159 RS1X_SOYBN 159 RS41_YEAST 155 Pratt run started at Thu Feb 6 21:06:08 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 28( 22) K-T-x(4,5)-V 2: 11.5102 22( 22) P-x-S-x(0,2)-K 3: 11.5102 24( 22) R-x(2,4)-S-K 4: 11.5102 30( 22) K-T-x(3,5)-V 5: 11.5102 29( 22) K-x(0,2)-T-x(4)-V 6: 11.0102 42( 22) K-x(4,5)-V-x(0,2)-V 7: 11.0102 22( 22) R-x(0,1)-P-x(2,4)-K 8: 10.5102 54( 22) K-x(3,5)-V-x(0,2)-V 9: 10.5102 33( 22) T-x(2,4)-V-x(0,2)-V 10: 10.5102 43( 22) V-x(3,5)-R-x(2,4)-K 11: 8.3401 36( 22) G-x-V 12: 8.3401 34( 22) K-x(3)-V 13: 8.3401 34( 22) T-x(4)-V 14: 8.3401 39( 22) S-K 15: 8.3401 26( 22) G-D 16: 8.3401 39( 22) G-x(2)-V 17: 7.8401 58( 22) V-x(1,2)-V 18: 7.8401 44( 22) K-x(0,1)-R 19: 7.8401 70( 22) K-x(2,3)-R 20: 7.8401 35( 22) L-x(0,1)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 34.8169 22( 22) G-D-x-[ILV]-x-[ILV]-x(2)-[ACSTV]-[KR]-P-[ILV]-S-x(4)-[FHW]-x-[AILV] B 2: 16.4285 22( 22) P-[ILV]-S-x(0,2)-K-x(3)-[FILV] C 3: 13.6600 22( 22) R-x(0,1)-P-x(2,4)-K-x(3)-[FLV] D 4: 12.0102 28( 22) K-T-x(4,5)-V E 5: 11.5102 24( 22) R-x(2,4)-S-K F 6: 11.5102 30( 22) K-T-x(3,5)-V G 7: 11.5102 29( 22) K-x(0,2)-T-x(4)-V H 8: 11.0102 42( 22) K-x(4,5)-V-x(0,2)-V I 9: 10.5553 24( 22) K-[NQST]-x(2)-V J 10: 10.5102 54( 22) K-x(3,5)-V-x(0,2)-V K 11: 10.5102 33( 22) T-x(2,4)-V-x(0,2)-V L 12: 10.5102 43( 22) V-x(3,5)-R-x(2,4)-K M 13: 8.3401 36( 22) G-x-V N 14: 8.3401 34( 22) T-x(4)-V O 15: 8.3401 39( 22) S-K P 16: 8.3401 39( 22) G-x(2)-V Q 17: 7.8401 58( 22) V-x(1,2)-V R 18: 7.8401 44( 22) K-x(0,1)-R S 19: 7.8401 70( 22) K-x(2,3)-R T 20: 7.8401 35( 22) L-x(0,1)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 34.8169 22( 22) G-D-x-[ILV]-x-[ILV]-x(2)-[ACSTV]-[KR]-P-[ILV]-S-x(4)-[FHW]-x-[AILV] Occurences: 22(22) RS11_HUMAN : 123- 142: rdvqi GDiVtVgeCRPLSktvrFnV lkvtk RS11_XENLA : 123- 142: rdvqv GDtVtVgeCRPLSktvrFnV lkvtk RS17_ACYKS : 56- 75: necgi GDvVeIreCRPLSktksWtL vrvvd RS17_ARATH : 101- 120: nqfkv GDvVrLekSRPISktksFvA lpvia RS17_BACST : 57- 76: neakv GDiVkImeTRPLSatkrFrL veive RS17_BACSU : 57- 76: nqaki GDiVkImeTRPLSatkrFrL vevve RS17_CHLTR : 59- 78: ldvke GDtVrIqeTRPLSktkrWrV vgrvn RS17_CYAPA : 54- 73: hickl GDeVkIseVKPISktkrWiI sevls RS17_ECOLI : 55- 74: necgi GDvVeIreCRPLSktksWtL vrvve RS17_HAEIN : 55- 74: neakv GDtVeIreCRPLSktksWtL vrvve RS17_HALMA : 80- 99: ldlav GDtVtIaeCRPLSktksHvV vgvva RS17_METVA : 82- 101: inakt GDvVkVmeCRPVSktksFvV iekte RS17_MYCCA : 57- 76: qvaqm GDkVeImeTRPLSktknFrL vrvie RS17_PEA : 89- 108: ndfkv GDiVqLlkTRPISkkktFlA vpaps RS17_THEMA : 54- 73: necki GDvVeIeeTRPLSkakrWrV vriiq RS17_THETH : 53- 72: erykv GDvVeIieARPISkrkrFrV lrlve RS1W_ARATH : 121- 140: frvke GDhViIgqCRPLSktvrFnV lkvip RS1X_ARATH : 121- 140: frvke GDhIiIgqCRPLSktvrFnV lkvip RS1X_DUNTE : 120- 139: frvrd GDtViIgqCRPLSktirFnV lrvip RS1X_MAIZE : 121- 140: frvke GDhViIgqCRPLSktvrFnV vkvip RS1X_SOYBN : 121- 140: frvke GDhViIgqCRPLSktvrFnV lkvip RS41_YEAST : 119- 138: frvqv GDiVtVgqCRPISktvrFnV vkvsa B 2: 16.4285 22( 22) P-[ILV]-S-x(0,2)-K-x(3)-[FILV] Occurences: 22(22) RS11_HUMAN : 133- 140: vgecr PLS--KtvrF nvlkv RS11_XENLA : 133- 140: vgecr PLS--KtvrF nvlkv RS17_ACYKS : 66- 75: irecr PLSktKswtL vrvvd RS17_ARATH : 111- 118: leksr PIS--KtksF valpv RS17_BACST : 67- 76: imetr PLSatKrfrL veive RS17_BACSU : 67- 76: imetr PLSatKrfrL vevve RS17_CHLTR : 69- 78: iqetr PLSktKrwrV vgrvn RS17_CYAPA : 64- 73: isevk PISktKrwiI sevls RS17_ECOLI : 65- 74: irecr PLSktKswtL vrvve RS17_HAEIN : 65- 74: irecr PLSktKswtL vrvve RS17_HALMA : 90- 99: iaecr PLSktKshvV vgvva RS17_METVA : 92- 99: vmecr PVS--KtksF vviek RS17_METVA : 92- 101: vmecr PVSktKsfvV iekte RS17_MYCCA : 67- 74: imetr PLS--KtknF rlvrv RS17_MYCCA : 67- 76: imetr PLSktKnfrL vrvie RS17_PEA : 99- 106: llktr PIS--KkktF lavpa RS17_PEA : 99- 107: llktr PISk-KktfL avpap RS17_THEMA : 64- 73: ieetr PLSkaKrwrV vriiq RS17_THETH : 63- 70: iiear PIS--KrkrF rvlrl RS17_THETH : 63- 72: iiear PISkrKrfrV lrlve RS1W_ARATH : 131- 138: igqcr PLS--KtvrF nvlkv RS1X_ARATH : 131- 138: igqcr PLS--KtvrF nvlkv RS1X_DUNTE : 130- 137: igqcr PLS--KtirF nvlrv RS1X_MAIZE : 131- 138: igqcr PLS--KtvrF nvvkv RS1X_SOYBN : 131- 138: igqcr PLS--KtvrF nvlkv RS41_YEAST : 129- 136: vgqcr PIS--KtvrF nvvkv C 3: 13.6600 22( 22) R-x(0,1)-P-x(2,4)-K-x(3)-[FLV] Occurences: 22(22) RS11_HUMAN : 132- 140: tvgec R-Pls--KtvrF nvlkv RS11_XENLA : 132- 140: tvgec R-Pls--KtvrF nvlkv RS17_ACYKS : 65- 75: eirec R-PlsktKswtL vrvvd RS17_ARATH : 110- 118: rleks R-Pis--KtksF valpv RS17_BACST : 66- 76: kimet R-PlsatKrfrL veive RS17_BACSU : 66- 76: kimet R-PlsatKrfrL vevve RS17_CHLTR : 68- 78: riqet R-PlsktKrwrV vgrvn RS17_CYAPA : 12- 21: vgvvi RnPqe--KtviV avnnr RS17_ECOLI : 64- 74: eirec R-PlsktKswtL vrvve RS17_HAEIN : 64- 74: eirec R-PlsktKswtL vrvve RS17_HALMA : 89- 99: tiaec R-PlsktKshvV vgvva RS17_METVA : 91- 99: kvmec R-Pvs--KtksF vviek RS17_METVA : 91- 101: kvmec R-PvsktKsfvV iekte RS17_MYCCA : 66- 74: eimet R-Pls--KtknF rlvrv RS17_MYCCA : 66- 76: eimet R-PlsktKnfrL vrvie RS17_PEA : 98- 106: qllkt R-Pis--KkktF lavpa RS17_PEA : 98- 107: qllkt R-Pisk-KktfL avpap RS17_THEMA : 63- 73: eieet R-PlskaKrwrV vriiq RS17_THETH : 62- 70: eiiea R-Pis--KrkrF rvlrl RS17_THETH : 62- 72: eiiea R-PiskrKrfrV lrlve RS1W_ARATH : 130- 138: iigqc R-Pls--KtvrF nvlkv RS1X_ARATH : 130- 138: iigqc R-Pls--KtvrF nvlkv RS1X_DUNTE : 129- 137: iigqc R-Pls--KtirF nvlrv RS1X_MAIZE : 130- 138: iigqc R-Pls--KtvrF nvvkv RS1X_SOYBN : 130- 138: iigqc R-Pls--KtvrF nvlkv RS41_YEAST : 128- 136: tvgqc R-Pis--KtvrF nvvkv D 4: 12.0102 28( 22) K-T-x(4,5)-V Occurences: 28(22) RS11_HUMAN : 136- 142: crpls KTvrfn-V lkvtk RS11_XENLA : 136- 142: crpls KTvrfn-V lkvtk RS17_ACYKS : 69- 76: crpls KTkswtlV rvvdk RS17_ARATH : 51- 57: viram KTmqgr-V vcats RS17_ARATH : 51- 58: viram KTmqgrvV catsd RS17_ARATH : 64- 70: catsd KTvave-V vrlap RS17_ARATH : 64- 71: catsd KTvavevV rlaph RS17_BACST : 20- 26: sdkmd KTitvl-V etykk RS17_BACSU : 20- 26: sdkmd KTitvv-V etykk RS17_CHLTR : 10- 16: vrgrr KTkigv-V vsskm RS17_CHLTR : 10- 17: vrgrr KTkigvvV sskme RS17_CHLTR : 23- 29: sskme KTvvvr-V ervys RS17_CHLTR : 72- 78: trpls KTkrwr-V vgrvn RS17_CHLTR : 72- 79: trpls KTkrwrvV grvn RS17_CYAPA : 17- 23: rnpqe KTviva-V nnrvr RS17_ECOLI : 68- 75: crpls KTkswtlV rvvek RS17_HAEIN : 68- 75: crpls KTkswtlV rvvek RS17_HALMA : 93- 99: crpls KTkshv-V vgvva RS17_HALMA : 93- 100: crpls KTkshvvV gvvad RS17_METVA : 80- 87: pcina KTgdvvkV mecrp RS17_METVA : 95- 101: crpvs KTksfv-V iekte RS17_MYCCA : 20- 26: sdkmd KTitvl-V etykn RS17_MYCCA : 70- 77: trpls KTknfrlV rviek RS17_PEA : 39- 45: aikam KTmegk-V vcasg RS17_PEA : 39- 46: aikam KTmegkvV casgn RS17_PEA : 52- 58: casgn KTvave-V trlap RS17_THEMA : 17- 23: sdkmd KTvvva-V eklvq RS17_THETH : 16- 22: sdkmq KTvtvl-V erqfp RS1W_ARATH : 134- 140: crpls KTvrfn-V lkvip RS1X_ARATH : 134- 140: crpls KTvrfn-V lkvip RS1X_DUNTE : 133- 139: crpls KTirfn-V lrvip RS1X_MAIZE : 134- 140: crpls KTvrfn-V vkvip RS1X_MAIZE : 134- 141: crpls KTvrfnvV kvipa RS1X_SOYBN : 134- 140: crpls KTvrfn-V lkvip RS41_YEAST : 132- 138: crpis KTvrfn-V vkvsa RS41_YEAST : 132- 139: crpis KTvrfnvV kvsaa E 5: 11.5102 24( 22) R-x(2,4)-S-K Occurences: 24(22) RS11_HUMAN : 132- 136: tvgec Rpl--SK tvrfn RS11_XENLA : 132- 136: tvgec Rpl--SK tvrfn RS17_ACYKS : 65- 69: eirec Rpl--SK tkswt RS17_ARATH : 110- 114: rleks Rpi--SK tksfv RS17_BACST : 38- 43: plygk Rvky-SK kykah RS17_BACSU : 38- 43: tlygk Rvky-SK kfkah RS17_CHLTR : 43- 47: yakvv Rds--SK yyahn RS17_CHLTR : 68- 72: riqet Rpl--SK tkrwr RS17_CYAPA : 28- 34: vnnrv RhnkySK iiirt RS17_ECOLI : 64- 68: eirec Rpl--SK tkswt RS17_HAEIN : 64- 68: eirec Rpl--SK tkswt RS17_HALMA : 89- 93: tiaec Rpl--SK tkshv RS17_METVA : 91- 95: kvmec Rpv--SK tksfv RS17_MYCCA : 38- 43: piykk Rvky-SK kykah RS17_MYCCA : 66- 70: eimet Rpl--SK tknfr RS17_PEA : 98- 102: qllkt Rpi--SK kktfl RS17_THEMA : 63- 67: eieet Rpl--SK akrwr RS17_THETH : 62- 66: eiiea Rpi--SK rkrfr RS1W_ARATH : 130- 134: iigqc Rpl--SK tvrfn RS1X_ARATH : 130- 134: iigqc Rpl--SK tvrfn RS1X_DUNTE : 129- 133: iigqc Rpl--SK tirfn RS1X_MAIZE : 130- 134: iigqc Rpl--SK tvrfn RS1X_SOYBN : 130- 134: iigqc Rpl--SK tvrfn RS41_YEAST : 128- 132: tvgqc Rpi--SK tvrfn F 6: 11.5102 30( 22) K-T-x(3,5)-V Occurences: 30(22) RS11_HUMAN : 136- 142: crpls KTvrfn-V lkvtk RS11_XENLA : 136- 142: crpls KTvrfn-V lkvtk RS17_ACYKS : 69- 76: crpls KTkswtlV rvvdk RS17_ARATH : 51- 57: viram KTmqgr-V vcats RS17_ARATH : 51- 58: viram KTmqgrvV catsd RS17_ARATH : 64- 70: catsd KTvave-V vrlap RS17_ARATH : 64- 71: catsd KTvavevV rlaph RS17_ARATH : 114- 119: srpis KTksf--V alpvi RS17_BACST : 20- 26: sdkmd KTitvl-V etykk RS17_BACSU : 20- 25: sdkmd KTitv--V vetyk RS17_BACSU : 20- 26: sdkmd KTitvv-V etykk RS17_CHLTR : 10- 15: vrgrr KTkig--V vvssk RS17_CHLTR : 10- 16: vrgrr KTkigv-V vsskm RS17_CHLTR : 10- 17: vrgrr KTkigvvV sskme RS17_CHLTR : 23- 29: sskme KTvvvr-V ervys RS17_CHLTR : 72- 78: trpls KTkrwr-V vgrvn RS17_CHLTR : 72- 79: trpls KTkrwrvV grvn RS17_CYAPA : 17- 23: rnpqe KTviva-V nnrvr RS17_ECOLI : 68- 75: crpls KTkswtlV rvvek RS17_HAEIN : 68- 75: crpls KTkswtlV rvvek RS17_HALMA : 93- 98: crpls KTksh--V vvgvv RS17_HALMA : 93- 99: crpls KTkshv-V vgvva RS17_HALMA : 93- 100: crpls KTkshvvV gvvad RS17_METVA : 80- 85: pcina KTgdv--V kvmec RS17_METVA : 80- 87: pcina KTgdvvkV mecrp RS17_METVA : 95- 100: crpvs KTksf--V viekt RS17_METVA : 95- 101: crpvs KTksfv-V iekte RS17_MYCCA : 20- 26: sdkmd KTitvl-V etykn RS17_MYCCA : 70- 77: trpls KTknfrlV rviek RS17_PEA : 39- 45: aikam KTmegk-V vcasg RS17_PEA : 39- 46: aikam KTmegkvV casgn RS17_PEA : 52- 58: casgn KTvave-V trlap RS17_PEA : 104- 109: piskk KTfla--V papsr RS17_THEMA : 17- 23: sdkmd KTvvva-V eklvq RS17_THETH : 16- 22: sdkmq KTvtvl-V erqfp RS1W_ARATH : 134- 140: crpls KTvrfn-V lkvip RS1X_ARATH : 134- 140: crpls KTvrfn-V lkvip RS1X_DUNTE : 133- 139: crpls KTirfn-V lrvip RS1X_MAIZE : 134- 140: crpls KTvrfn-V vkvip RS1X_MAIZE : 134- 141: crpls KTvrfnvV kvipa RS1X_SOYBN : 134- 140: crpls KTvrfn-V lkvip RS41_YEAST : 132- 138: crpis KTvrfn-V vkvsa RS41_YEAST : 132- 139: crpis KTvrfnvV kvsaa G 7: 11.5102 29( 22) K-x(0,2)-T-x(4)-V Occurences: 29(22) RS11_HUMAN : 136- 142: crpls K--TvrfnV lkvtk RS11_XENLA : 136- 142: crpls K--TvrfnV lkvtk RS17_ACYKS : 39- 46: ygkfi Kr-TtklhV hdenn RS17_ACYKS : 71- 79: plskt KswTlvrvV dkail RS17_ARATH : 51- 57: viram K--TmqgrV vcats RS17_ARATH : 64- 70: catsd K--TvaveV vrlap RS17_BACST : 20- 26: sdkmd K--TitvlV etykk RS17_BACSU : 20- 26: sdkmd K--TitvvV etykk RS17_CHLTR : 10- 16: vrgrr K--TkigvV vsskm RS17_CHLTR : 23- 29: sskme K--TvvvrV ervys RS17_CHLTR : 72- 78: trpls K--TkrwrV vgrvn RS17_CYAPA : 17- 23: rnpqe K--TvivaV nnrvr RS17_ECOLI : 3- 11: td KirTlqgrV vsdkm RS17_ECOLI : 38- 45: ygkfi Kr-TtklhV hdenn RS17_ECOLI : 70- 78: plskt KswTlvrvV ekavl RS17_HAEIN : 70- 78: plskt KswTlvrvV ekavi RS17_HALMA : 93- 99: crpls K--TkshvV vgvva RS17_METVA : 95- 101: crpvs K--TksfvV iekte RS17_MYCCA : 20- 26: sdkmd K--TitvlV etykn RS17_PEA : 39- 45: aikam K--TmegkV vcasg RS17_PEA : 52- 58: casgn K--TvaveV trlap RS17_THEMA : 17- 23: sdkmd K--TvvvaV eklvq RS17_THETH : 16- 22: sdkmq K--TvtvlV erqfp RS1W_ARATH : 134- 140: crpls K--TvrfnV lkvip RS1X_ARATH : 134- 140: crpls K--TvrfnV lkvip RS1X_DUNTE : 133- 139: crpls K--TirfnV lrvip RS1X_MAIZE : 134- 140: crpls K--TvrfnV vkvip RS1X_SOYBN : 134- 140: crpls K--TvrfnV lkvip RS41_YEAST : 132- 138: crpis K--TvrfnV vkvsa H 8: 11.0102 42( 22) K-x(4,5)-V-x(0,2)-V Occurences: 42(22) RS11_HUMAN : 136- 145: crpls KtvrfnVlkV tkaag RS11_XENLA : 136- 145: crpls KtvrfnVlkV tkaag RS17_ACYKS : 16- 23: rvvsh KmeksiV--V aiert RS17_ACYKS : 71- 78: plskt Kswtl-Vr-V vdkai RS17_ACYKS : 71- 79: plskt Kswtl-VrvV dkail RS17_ARATH : 51- 58: viram KtmqgrV--V catsd RS17_ARATH : 64- 71: catsd KtvaveV--V rlaph RS17_BACST : 7- 14: ernqr KvyvgrV--V sdkmd RS17_BACST : 72- 80: plsat Krfrl-VeiV ekavv RS17_BACSU : 7- 14: ernqr KvyqgrV--V sdkmd RS17_BACSU : 20- 26: sdkmd Ktitv-V--V etykk RS17_BACSU : 72- 79: plsat Krfrl-Ve-V veeav RS17_BACSU : 72- 80: plsat Krfrl-VevV eeavi RS17_CHLTR : 10- 16: vrgrr Ktkig-V--V vsskm RS17_CHLTR : 10- 17: vrgrr KtkigvV--V sskme RS17_CHLTR : 10- 17: vrgrr Ktkig-Vv-V sskme RS17_CHLTR : 20- 26: vvvss Kmekt-V--V vrver RS17_CHLTR : 20- 27: vvvss KmektvV--V rverv RS17_CHLTR : 20- 27: vvvss Kmekt-Vv-V rverv RS17_CHLTR : 20- 29: vvvss KmektvVvrV ervys RS17_CHLTR : 23- 32: sskme KtvvvrVerV yshpq RS17_CHLTR : 72- 79: trpls KtkrwrV--V grvn RS17_CHLTR : 74- 82: plskt Krwrv-VgrV n RS17_CYAPA : 4- 10: mas Kervg-V--V irnpq RS17_ECOLI : 15- 22: rvvsd KmeksiV--V aierf RS17_ECOLI : 70- 77: plskt Kswtl-Vr-V vekav RS17_ECOLI : 70- 78: plskt Kswtl-VrvV ekavl RS17_HAEIN : 15- 22: kvvsd KmeksfV--V aierk RS17_HAEIN : 70- 77: plskt Kswtl-Vr-V vekav RS17_HAEIN : 70- 78: plskt Kswtl-VrvV ekavi RS17_HALMA : 93- 99: crpls Ktksh-V--V vgvva RS17_HALMA : 93- 100: crpls KtkshvV--V gvvad RS17_HALMA : 93- 100: crpls Ktksh-Vv-V gvvad RS17_HALMA : 93- 102: crpls KtkshvVvgV vadeq RS17_HALMA : 95- 102: plskt Kshvv-Vg-V vadeq RS17_HALMA : 95- 103: plskt Kshvv-VgvV adeqd RS17_METVA : 80- 87: pcina Ktgdv-Vk-V mecrp RS17_METVA : 95- 101: crpvs Ktksf-V--V iekte RS17_MYCCA : 72- 79: plskt Knfrl-Vr-V iekat RS17_PEA : 39- 46: aikam KtmegkV--V casgn RS17_THEMA : 4- 11: mpr KrltgiV--V sdkmd RS17_THEMA : 14- 20: ivvsd Kmdkt-V--V vavek RS17_THEMA : 14- 21: ivvsd KmdktvV--V avekl RS17_THEMA : 14- 21: ivvsd Kmdkt-Vv-V avekl RS17_THEMA : 14- 23: ivvsd KmdktvVvaV eklvq RS17_THEMA : 67- 74: trpls KakrwrV--V riiqr RS17_THETH : 2- 9: p KkvltgV--V vsdkm RS17_THETH : 2- 10: p KkvltgVv-V sdkmq RS17_THETH : 3- 9: pk Kvltg-V--V vsdkm RS17_THETH : 3- 10: pk KvltgvV--V sdkmq RS17_THETH : 3- 10: pk Kvltg-Vv-V sdkmq RS17_THETH : 13- 20: vvvsd Kmqkt-Vt-V lverq RS1W_ARATH : 134- 143: crpls KtvrfnVlkV iptga RS1X_ARATH : 134- 143: crpls KtvrfnVlkV ipags RS1X_DUNTE : 7- 15: aeqte KafqkqVg-V tgcfk RS1X_DUNTE : 133- 142: crpls KtirfnVlrV ipqag RS1X_MAIZE : 134- 141: crpls KtvrfnV--V kvipa RS1X_MAIZE : 134- 143: crpls KtvrfnVvkV ipags RS1X_SOYBN : 134- 143: crpls KtvrfnVlkV ipags RS41_YEAST : 68- 75: vsirg KiltgtV--V stkmh RS41_YEAST : 101- 108: ynrye Krhkn-Vp-V hvspa RS41_YEAST : 132- 139: crpis KtvrfnV--V kvsaa RS41_YEAST : 132- 141: crpis KtvrfnVvkV saaag I 9: 10.5553 24( 22) K-[NQST]-x(2)-V Occurences: 24(22) RS11_HUMAN : 107- 111: fekrh KNmsV hlspc RS11_XENLA : 107- 111: fekrh KNmsV hlspc RS17_ACYKS : 19- 23: shkme KSivV aiert RS17_ARATH : 64- 68: catsd KTvaV evvrl RS17_BACST : 20- 24: sdkmd KTitV lvety RS17_BACSU : 20- 24: sdkmd KTitV vvety RS17_CHLTR : 23- 27: sskme KTvvV rverv RS17_CYAPA : 17- 21: rnpqe KTviV avnnr RS17_ECOLI : 18- 22: sdkme KSivV aierf RS17_HAEIN : 18- 22: sdkme KSfvV aierk RS17_HALMA : 42- 46: stdme KTvvV ereyd RS17_HALMA : 95- 99: plskt KShvV vgvva RS17_METVA : 80- 84: pcina KTgdV vkvme RS17_METVA : 97- 101: pvskt KSfvV iekte RS17_MYCCA : 20- 24: sdkmd KTitV lvety RS17_PEA : 52- 56: casgn KTvaV evtrl RS17_THEMA : 17- 21: sdkmd KTvvV avekl RS17_THETH : 16- 20: sdkmq KTvtV lverq RS1W_ARATH : 11- 15: ekafl KQpkV flssk RS1X_ARATH : 11- 15: ekafl KQpkV flssk RS1X_DUNTE : 11- 15: ekafq KQvgV tgcfk RS1X_MAIZE : 11- 15: ekafl KQpkV flssk RS1X_SOYBN : 11- 15: ekafl KQpkV flstk RS41_YEAST : 104- 108: yekrh KNvpV hvspa J 10: 10.5102 54( 22) K-x(3,5)-V-x(0,2)-V Occurences: 54(22) RS11_HUMAN : 136- 145: crpls KtvrfnVlkV tkaag RS11_XENLA : 136- 145: crpls KtvrfnVlkV tkaag RS17_ACYKS : 16- 23: rvvsh KmeksiV--V aiert RS17_ACYKS : 71- 78: plskt Kswtl-Vr-V vdkai RS17_ACYKS : 71- 79: plskt Kswtl-VrvV dkail RS17_ARATH : 51- 58: viram KtmqgrV--V catsd RS17_ARATH : 64- 71: catsd KtvaveV--V rlaph RS17_ARATH : 64- 70: catsd Ktva--Ve-V vrlap RS17_ARATH : 64- 71: catsd Ktva--VevV rlaph RS17_ARATH : 99- 104: pdnqf Kvgd--V--V rleks RS17_BACST : 7- 14: ernqr KvyvgrV--V sdkmd RS17_BACST : 20- 26: sdkmd Ktit--Vl-V etykk RS17_BACST : 72- 80: plsat Krfrl-VeiV ekavv RS17_BACSU : 7- 14: ernqr KvyqgrV--V sdkmd RS17_BACSU : 20- 25: sdkmd Ktit--V--V vetyk RS17_BACSU : 20- 26: sdkmd Ktitv-V--V etykk RS17_BACSU : 20- 26: sdkmd Ktit--Vv-V etykk RS17_BACSU : 72- 79: plsat Krfrl-Ve-V veeav RS17_BACSU : 72- 80: plsat Krfrl-VevV eeavi RS17_CHLTR : 10- 16: vrgrr Ktkig-V--V vsskm RS17_CHLTR : 10- 17: vrgrr KtkigvV--V sskme RS17_CHLTR : 10- 17: vrgrr Ktkig-Vv-V sskme RS17_CHLTR : 12- 17: grrkt Kigv--V--V sskme RS17_CHLTR : 20- 26: vvvss Kmekt-V--V vrver RS17_CHLTR : 20- 27: vvvss KmektvV--V rverv RS17_CHLTR : 20- 27: vvvss Kmekt-Vv-V rverv RS17_CHLTR : 20- 29: vvvss KmektvVvrV ervys RS17_CHLTR : 23- 29: sskme Ktvv--Vr-V ervys RS17_CHLTR : 23- 32: sskme KtvvvrVerV yshpq RS17_CHLTR : 72- 79: trpls KtkrwrV--V grvn RS17_CHLTR : 74- 79: plskt Krwr--V--V grvn RS17_CHLTR : 74- 82: plskt Krwrv-VgrV n RS17_CYAPA : 4- 10: mas Kervg-V--V irnpq RS17_CYAPA : 17- 23: rnpqe Ktvi--Va-V nnrvr RS17_ECOLI : 15- 22: rvvsd KmeksiV--V aierf RS17_ECOLI : 70- 77: plskt Kswtl-Vr-V vekav RS17_ECOLI : 70- 78: plskt Kswtl-VrvV ekavl RS17_HAEIN : 15- 22: kvvsd KmeksfV--V aierk RS17_HAEIN : 70- 77: plskt Kswtl-Vr-V vekav RS17_HAEIN : 70- 78: plskt Kswtl-VrvV ekavi RS17_HALMA : 93- 99: crpls Ktksh-V--V vgvva RS17_HALMA : 93- 100: crpls KtkshvV--V gvvad RS17_HALMA : 93- 100: crpls Ktksh-Vv-V gvvad RS17_HALMA : 93- 102: crpls KtkshvVvgV vadeq RS17_HALMA : 95- 100: plskt Kshv--V--V gvvad RS17_HALMA : 95- 102: plskt Kshvv-Vg-V vadeq RS17_HALMA : 95- 102: plskt Kshv--VvgV vadeq RS17_HALMA : 95- 103: plskt Kshvv-VgvV adeqd RS17_METVA : 80- 85: pcina Ktgd--V--V kvmec RS17_METVA : 80- 87: pcina Ktgdv-Vk-V mecrp RS17_METVA : 80- 87: pcina Ktgd--VvkV mecrp RS17_METVA : 95- 101: crpvs Ktksf-V--V iekte RS17_MYCCA : 20- 26: sdkmd Ktit--Vl-V etykn RS17_MYCCA : 72- 79: plskt Knfrl-Vr-V iekat RS17_PEA : 39- 46: aikam KtmegkV--V casgn RS17_PEA : 52- 58: casgn Ktva--Ve-V trlap RS17_THEMA : 4- 11: mpr KrltgiV--V sdkmd RS17_THEMA : 14- 20: ivvsd Kmdkt-V--V vavek RS17_THEMA : 14- 21: ivvsd KmdktvV--V avekl RS17_THEMA : 14- 21: ivvsd Kmdkt-Vv-V avekl RS17_THEMA : 14- 23: ivvsd KmdktvVvaV eklvq RS17_THEMA : 17- 23: sdkmd Ktvv--Va-V eklvq RS17_THEMA : 52- 57: ernec Kigd--V--V eieet RS17_THEMA : 67- 74: trpls KakrwrV--V riiqr RS17_THEMA : 69- 74: plska Krwr--V--V riiqr RS17_THETH : 2- 9: p KkvltgV--V vsdkm RS17_THETH : 2- 10: p KkvltgVv-V sdkmq RS17_THETH : 3- 9: pk Kvltg-V--V vsdkm RS17_THETH : 3- 10: pk KvltgvV--V sdkmq RS17_THETH : 3- 10: pk Kvltg-Vv-V sdkmq RS17_THETH : 13- 20: vvvsd Kmqkt-Vt-V lverq RS17_THETH : 16- 22: sdkmq Ktvt--Vl-V erqfp RS17_THETH : 51- 56: peery Kvgd--V--V eiiea RS1W_ARATH : 134- 143: crpls KtvrfnVlkV iptga RS1X_ARATH : 134- 143: crpls KtvrfnVlkV ipags RS1X_DUNTE : 7- 15: aeqte KafqkqVg-V tgcfk RS1X_DUNTE : 133- 142: crpls KtirfnVlrV ipqag RS1X_MAIZE : 134- 141: crpls KtvrfnV--V kvipa RS1X_MAIZE : 134- 143: crpls KtvrfnVvkV ipags RS1X_SOYBN : 134- 143: crpls KtvrfnVlkV ipags RS41_YEAST : 68- 75: vsirg KiltgtV--V stkmh RS41_YEAST : 101- 108: ynrye Krhkn-Vp-V hvspa RS41_YEAST : 104- 110: yekrh Knvp--Vh-V spafr RS41_YEAST : 132- 139: crpis KtvrfnV--V kvsaa RS41_YEAST : 132- 141: crpis KtvrfnVvkV saaag K 11: 10.5102 33( 22) T-x(2,4)-V-x(0,2)-V Occurences: 33(22) RS11_HUMAN : 137- 145: rplsk TvrfnVlkV tkaag RS11_XENLA : 137- 145: rplsk TvrfnVlkV tkaag RS17_ACYKS : 7- 13: tdvir TlqgrV--V shkme RS17_ACYKS : 74- 79: ktksw Tlvr-V--V dkail RS17_ARATH : 52- 58: iramk TmqgrV--V catsd RS17_ARATH : 61- 68: rvvca TsdktVa-V evvrl RS17_ARATH : 65- 71: atsdk TvaveV--V rlaph RS17_ARATH : 65- 70: atsdk Tva--Ve-V vrlap RS17_ARATH : 65- 71: atsdk Tva--VevV rlaph RS17_BACST : 21- 26: dkmdk Tit--Vl-V etykk RS17_BACSU : 21- 25: dkmdk Tit--V--V vetyk RS17_BACSU : 21- 26: dkmdk Titv-V--V etykk RS17_BACSU : 21- 26: dkmdk Tit--Vv-V etykk RS17_CHLTR : 11- 16: rgrrk Tkig-V--V vsskm RS17_CHLTR : 11- 17: rgrrk TkigvV--V sskme RS17_CHLTR : 11- 17: rgrrk Tkig-Vv-V sskme RS17_CHLTR : 24- 29: skmek Tvv--Vr-V ervys RS17_CHLTR : 24- 32: skmek TvvvrVerV yshpq RS17_CHLTR : 73- 79: rplsk TkrwrV--V grvn RS17_CYAPA : 18- 23: npqek Tvi--Va-V nnrvr RS17_ECOLI : 6- 12: tdkir TlqgrV--V sdkme RS17_ECOLI : 73- 78: ktksw Tlvr-V--V ekavl RS17_HAEIN : 73- 78: ktksw Tlvr-V--V ekavi RS17_HALMA : 94- 99: rplsk Tksh-V--V vgvva RS17_HALMA : 94- 100: rplsk TkshvV--V gvvad RS17_HALMA : 94- 100: rplsk Tksh-Vv-V gvvad RS17_HALMA : 94- 102: rplsk TkshvVvgV vadeq RS17_METVA : 81- 85: cinak Tgd--V--V kvmec RS17_METVA : 81- 87: cinak Tgdv-Vk-V mecrp RS17_METVA : 81- 87: cinak Tgd--VvkV mecrp RS17_METVA : 96- 101: rpvsk Tksf-V--V iekte RS17_MYCCA : 21- 26: dkmdk Tit--Vl-V etykn RS17_PEA : 40- 46: ikamk TmegkV--V casgn RS17_PEA : 53- 58: asgnk Tva--Ve-V trlap RS17_THEMA : 7- 11: prkrl Tgi--V--V sdkmd RS17_THEMA : 18- 23: dkmdk Tvv--Va-V eklvq RS17_THETH : 6- 10: pkkvl Tgv--V--V sdkmq RS17_THETH : 17- 22: dkmqk Tvt--Vl-V erqfp RS1W_ARATH : 135- 143: rplsk TvrfnVlkV iptga RS1X_ARATH : 135- 143: rplsk TvrfnVlkV ipags RS1X_DUNTE : 134- 142: rplsk TirfnVlrV ipqag RS1X_MAIZE : 135- 141: rplsk TvrfnV--V kvipa RS1X_MAIZE : 135- 143: rplsk TvrfnVvkV ipags RS1X_SOYBN : 135- 143: rplsk TvrfnVlkV ipags RS41_YEAST : 71- 75: rgkil Tgt--V--V stkmh RS41_YEAST : 133- 139: rpisk TvrfnV--V kvsaa RS41_YEAST : 133- 141: rpisk TvrfnVvkV saaag L 12: 10.5102 43( 22) V-x(3,5)-R-x(2,4)-K Occurences: 43(22) RS11_HUMAN : 126- 136: qigdi VtvgecRpls-K tvrfn RS11_HUMAN : 128- 136: gdivt Vgec--Rpls-K tvrfn RS11_XENLA : 126- 136: qvgdt VtvgecRpls-K tvrfn RS11_XENLA : 128- 136: gdtvt Vgec--Rpls-K tvrfn RS17_ACYKS : 22- 30: meksi Vvaie-Rtv--K hpiyg RS17_ACYKS : 23- 30: eksiv Vaie--Rtv--K hpiyg RS17_ACYKS : 59- 69: gigdv VeirecRpls-K tkswt RS17_ARATH : 44- 51: rmpal Vpvi--Ram--K tmqgr RS17_ARATH : 100- 108: dnqfk Vgdvv-Rle--K srpis RS17_ARATH : 104- 114: kvgdv VrleksRpis-K tksfv RS17_BACST : 8- 17: rnqrk Vyvg--RvvsdK mdkti RS17_BACSU : 8- 17: rnqrk Vyqg--RvvsdK mdkti RS17_CHLTR : 5- 12: masd Vrgr--Rkt--K igvvv RS17_CHLTR : 62- 72: kegdt VriqetRpls-K tkrwr RS17_CYAPA : 7- 17: asker Vgvvi-RnpqeK tviva RS17_CYAPA : 21- 31: ektvi Vavnn-RvrhnK yskii RS17_CYAPA : 23- 31: tviva Vnnrv-Rhn--K yskii RS17_ECOLI : 21- 29: meksi Vvaie-Rfv--K hpiyg RS17_ECOLI : 22- 29: eksiv Vaie--Rfv--K hpiyg RS17_ECOLI : 58- 68: gigdv VeirecRpls-K tkswt RS17_HAEIN : 21- 29: meksf Vvaie-Rkv--K hplyg RS17_HAEIN : 22- 29: eksfv Vaie--Rkv--K hplyg RS17_HAEIN : 58- 68: kvgdt VeirecRpls-K tkswt RS17_HALMA : 44- 53: dmekt Vvve--ReydvK vpkyd RS17_HALMA : 54- 62: eydvk Vpkyd-Rfm--K rrsrv RS17_HALMA : 83- 93: avgdt VtiaecRpls-K tkshv RS17_METVA : 85- 95: ktgdv VkvmecRpvs-K tksfv RS17_METVA : 87- 95: gdvvk Vmec--Rpvs-K tksfv RS17_MYCCA : 60- 70: qmgdk VeimetRpls-K tknfr RS17_PEA : 92- 102: kvgdi VqllktRpis-K kktfl RS17_PEA : 92- 103: kvgdi VqllktRpiskK ktfla RS17_PEA : 109- 117: ktfla Vpaps-Rks--K kagss RS17_PEA : 109- 118: ktfla Vpaps-Rksk-K agssg RS17_THEMA : 57- 67: kigdv VeieetRpls-K akrwr RS17_THETH : 56- 66: kvgdv VeiieaRpis-K rkrfr RS1W_ARATH : 95- 103: dylhf Vkkyp-Rye--K rhshi RS1W_ARATH : 124- 134: kegdh ViigqcRpls-K tvrfn RS1X_ARATH : 95- 103: dylhf Vkkyq-Rye--K rhsni RS1X_DUNTE : 123- 133: rdgdt ViigqcRpls-K tirfn RS1X_MAIZE : 95- 103: nylhf Vkkyq-Rye--K rhsni RS1X_MAIZE : 124- 134: kegdh ViigqcRpls-K tvrfn RS1X_SOYBN : 124- 134: kegdh ViigqcRpls-K tvrfn RS41_YEAST : 6- 14: stelt Vqse--Rafq-K qphif RS41_YEAST : 122- 132: qvgdi VtvgqcRpis-K tvrfn RS41_YEAST : 124- 132: gdivt Vgqc--Rpis-K tvrfn M 13: 8.3401 36( 22) G-x-V Occurences: 36(22) RS11_HUMAN : 64- 66: kcpft GnV sirgr RS11_HUMAN : 75- 77: grils GvV tkmkm RS11_XENLA : 64- 66: kcpft GnV sirgr RS11_XENLA : 75- 77: grils GvV tkmkm RS17_ACYKS : 10- 12: irtlq GrV vshkm RS17_ACYKS : 56- 58: necgi GdV veire RS17_ARATH : 55- 57: mktmq GrV vcats RS17_ARATH : 101- 103: nqfkv GdV vrlek RS17_BACST : 11- 13: rkvyv GrV vsdkm RS17_BACSU : 11- 13: rkvyq GrV vsdkm RS17_CHLTR : 14- 16: rktki GvV vsskm RS17_CHLTR : 80- 82: rwrvv GrV n RS17_CYAPA : 8- 10: skerv GvV irnpq RS17_ECOLI : 9- 11: irtlq GrV vsdkm RS17_ECOLI : 55- 57: necgi GdV veire RS17_HAEIN : 9- 11: irsvq GkV vsdkm RS17_HALMA : 33- 35: gqtln GeV astdm RS17_HALMA : 101- 103: shvvv GvV adeqd RS17_METVA : 35- 37: gqife GvV sgdkg RS17_METVA : 82- 84: inakt GdV vkvme RS17_MYCCA : 11- 13: rrvli GkV vsdkm RS17_PEA : 43- 45: mktme GkV vcasg RS17_THEMA : 8- 10: rkrlt GiV vsdkm RS17_THEMA : 54- 56: necki GdV veiee RS17_THEMA : 103- 105: avegk GgV es RS17_THETH : 7- 9: kkvlt GvV vsdkm RS17_THETH : 32- 34: phply GkV ikrsk RS17_THETH : 53- 55: erykv GdV veiie RS1W_ARATH : 63- 65: kcpft GtV sirgr RS1X_ARATH : 63- 65: kcpft GtV sirgr RS1X_DUNTE : 62- 64: kcpft GnV sirgr RS1X_DUNTE : 73- 75: grilt GvV ksskm RS1X_MAIZE : 63- 65: kcpft GtV sirgr RS1X_SOYBN : 63- 65: kcpft GnV sirgr RS41_YEAST : 61- 63: kcpft GlV sirgk RS41_YEAST : 72- 74: gkilt GtV vstkm N 14: 8.3401 34( 22) T-x(4)-V Occurences: 34(22) RS11_HUMAN : 137- 142: rplsk TvrfnV lkvtk RS11_XENLA : 137- 142: rplsk TvrfnV lkvtk RS17_ACYKS : 7- 12: tdvir TlqgrV vshkm RS17_ACYKS : 41- 46: kfikr TtklhV hdenn RS17_ACYKS : 74- 79: ktksw TlvrvV dkail RS17_ARATH : 52- 57: iramk TmqgrV vcats RS17_ARATH : 61- 66: rvvca TsdktV avevv RS17_ARATH : 65- 70: atsdk TvaveV vrlap RS17_BACST : 21- 26: dkmdk TitvlV etykk RS17_BACSU : 21- 26: dkmdk TitvvV etykk RS17_CHLTR : 11- 16: rgrrk TkigvV vsskm RS17_CHLTR : 24- 29: skmek TvvvrV ervys RS17_CHLTR : 73- 78: rplsk TkrwrV vgrvn RS17_CYAPA : 18- 23: npqek TvivaV nnrvr RS17_CYAPA : 39- 44: kiiir TkkyqV hdhsh RS17_ECOLI : 6- 11: tdkir TlqgrV vsdkm RS17_ECOLI : 40- 45: kfikr TtklhV hdenn RS17_ECOLI : 73- 78: ktksw TlvrvV ekavl RS17_HAEIN : 40- 45: kfirr TtklhV hdenn RS17_HAEIN : 73- 78: ktksw TlvrvV ekavi RS17_HALMA : 30- 35: svrgq TlngeV astdm RS17_HALMA : 94- 99: rplsk TkshvV vgvva RS17_METVA : 96- 101: rpvsk TksfvV iekte RS17_MYCCA : 21- 26: dkmdk TitvlV etykn RS17_PEA : 40- 45: ikamk TmegkV vcasg RS17_PEA : 53- 58: asgnk TvaveV trlap RS17_THEMA : 18- 23: dkmdk TvvvaV eklvq RS17_THETH : 17- 22: dkmqk TvtvlV erqfp RS1W_ARATH : 135- 140: rplsk TvrfnV lkvip RS1X_ARATH : 135- 140: rplsk TvrfnV lkvip RS1X_DUNTE : 134- 139: rplsk TirfnV lrvip RS1X_MAIZE : 135- 140: rplsk TvrfnV vkvip RS1X_SOYBN : 135- 140: rplsk TvrfnV lkvip RS41_YEAST : 133- 138: rpisk TvrfnV vkvsa O 15: 8.3401 39( 22) S-K Occurences: 39(22) RS11_HUMAN : 135- 136: ecrpl SK tvrfn RS11_XENLA : 135- 136: ecrpl SK tvrfn RS17_ACYKS : 68- 69: ecrpl SK tkswt RS17_ARATH : 30- 31: plssl SK pnsfp RS17_ARATH : 113- 114: ksrpi SK tksfv RS17_BACST : 42- 43: krvky SK kykah RS17_BACSU : 42- 43: krvky SK kfkah RS17_CHLTR : 19- 20: gvvvs SK mektv RS17_CHLTR : 46- 47: vvrds SK yyahn RS17_CHLTR : 71- 72: etrpl SK tkrwr RS17_CYAPA : 3- 4: ma SK ervgv RS17_CYAPA : 33- 34: rhnky SK iiirt RS17_CYAPA : 66- 67: evkpi SK tkrwi RS17_ECOLI : 67- 68: ecrpl SK tkswt RS17_HAEIN : 67- 68: ecrpl SK tkswt RS17_HALMA : 92- 93: ecrpl SK tkshv RS17_METVA : 57- 58: vtgyi SK yerye RS17_METVA : 94- 95: ecrpv SK tksfv RS17_MYCCA : 42- 43: krvky SK kykah RS17_MYCCA : 69- 70: etrpl SK tknfr RS17_PEA : 101- 102: ktrpi SK kktfl RS17_PEA : 116- 117: apsrk SK kagss RS17_THEMA : 66- 67: etrpl SK akrwr RS17_THETH : 38- 39: kvikr SK kylah RS17_THETH : 65- 66: earpi SK rkrfr RS17_THETH : 98- 99: nyasl SK rggka RS1W_ARATH : 19- 20: kvfls SK isgkg RS1W_ARATH : 57- 58: gayid SK cpftg RS1W_ARATH : 133- 134: qcrpl SK tvrfn RS1X_ARATH : 19- 20: kvfls SK ksgkg RS1X_ARATH : 133- 134: qcrpl SK tvrfn RS1X_DUNTE : 21- 22: tgcfk SK ekkap RS1X_DUNTE : 78- 79: gvvks SK mmrti RS1X_DUNTE : 132- 133: qcrpl SK tirfn RS1X_MAIZE : 19- 20: kvfls SK ksgkg RS1X_MAIZE : 133- 134: qcrpl SK tvrfn RS1X_SOYBN : 133- 134: qcrpl SK tvrfn RS41_YEAST : 27- 28: pkvkt SK rtkrw RS41_YEAST : 131- 132: qcrpi SK tvrfn P 16: 8.3401 39( 22) G-x(2)-V Occurences: 39(22) RS11_HUMAN : 123- 126: rdvqi GdiV tvgec RS11_XENLA : 123- 126: rdvqv GdtV tvgec RS17_ACYKS : 10- 13: irtlq GrvV shkme RS17_ACYKS : 56- 59: necgi GdvV eirec RS17_ARATH : 55- 58: mktmq GrvV catsd RS17_ARATH : 101- 104: nqfkv GdvV rleks RS17_BACST : 11- 14: rkvyv GrvV sdkmd RS17_BACST : 36- 39: khply GkrV kyskk RS17_BACST : 57- 60: neakv GdiV kimet RS17_BACSU : 11- 14: rkvyq GrvV sdkmd RS17_BACSU : 36- 39: khtly GkrV kyskk RS17_BACSU : 57- 60: nqaki GdiV kimet RS17_CHLTR : 14- 17: rktki GvvV sskme RS17_CHLTR : 59- 62: ldvke GdtV riqet RS17_CYAPA : 54- 57: hickl GdeV kisev RS17_ECOLI : 9- 12: irtlq GrvV sdkme RS17_ECOLI : 55- 58: necgi GdvV eirec RS17_HAEIN : 9- 12: irsvq GkvV sdkme RS17_HAEIN : 55- 58: neakv GdtV eirec RS17_HALMA : 3- 6: al GlnV qepee RS17_HALMA : 80- 83: ldlav GdtV tiaec RS17_METVA : 5- 8: msni GidV kapen RS17_METVA : 82- 85: inakt GdvV kvmec RS17_MYCCA : 11- 14: rrvli GkvV sdkmd RS17_MYCCA : 57- 60: qvaqm GdkV eimet RS17_PEA : 43- 46: mktme GkvV casgn RS17_PEA : 89- 92: ndfkv GdiV qllkt RS17_THEMA : 8- 11: rkrlt GivV sdkmd RS17_THEMA : 54- 57: necki GdvV eieet RS17_THETH : 7- 10: kkvlt GvvV sdkmq RS17_THETH : 53- 56: erykv GdvV eiiea RS1W_ARATH : 121- 124: frvke GdhV iigqc RS1X_ARATH : 52- 55: reaid GayV dkkcp RS1X_DUNTE : 51- 54: keaid GnyV dkkcp RS1X_DUNTE : 120- 123: frvrd GdtV iigqc RS1X_MAIZE : 121- 124: frvke GdhV iigqc RS1X_SOYBN : 121- 124: frvke GdhV iigqc RS41_YEAST : 72- 75: gkilt GtvV stkmh RS41_YEAST : 119- 122: frvqv GdiV tvgqc Q 17: 7.8401 58( 22) V-x(1,2)-V Occurences: 58(22) RS11_HUMAN : 126- 128: qigdi Vt-V gecrp RS11_HUMAN : 142- 145: tvrfn VlkV tkaag RS11_XENLA : 120- 122: pcfrd Vq-V gdtvt RS11_XENLA : 126- 128: qvgdt Vt-V gecrp RS11_XENLA : 142- 145: tvrfn VlkV tkaag RS17_ACYKS : 76- 78: kswtl Vr-V vdkai RS17_ACYKS : 76- 79: kswtl VrvV dkail RS17_ARATH : 44- 46: rmpal Vp-V iramk RS17_ARATH : 66- 68: tsdkt Va-V evvrl RS17_ARATH : 68- 70: dktva Ve-V vrlap RS17_ARATH : 68- 71: dktva VevV rlaph RS17_ARATH : 100- 103: dnqfk VgdV vrlek RS17_BACST : 8- 10: rnqrk Vy-V grvvs RS17_BACST : 10- 13: qrkvy VgrV vsdkm RS17_BACST : 24- 26: dktit Vl-V etykk RS17_BACST : 77- 80: krfrl VeiV ekavv RS17_BACSU : 24- 26: dktit Vv-V etykk RS17_BACSU : 77- 79: krfrl Ve-V veeav RS17_BACSU : 77- 80: krfrl VevV eeavi RS17_CHLTR : 15- 17: ktkig Vv-V sskme RS17_CHLTR : 25- 27: kmekt Vv-V rverv RS17_CHLTR : 26- 29: mektv VvrV ervys RS17_CHLTR : 27- 29: ektvv Vr-V ervys RS17_CHLTR : 29- 32: tvvvr VerV yshpq RS17_CHLTR : 79- 82: krwrv VgrV n RS17_CYAPA : 7- 9: asker Vg-V virnp RS17_CYAPA : 7- 10: asker VgvV irnpq RS17_CYAPA : 19- 21: pqekt Vi-V avnnr RS17_CYAPA : 21- 23: ektvi Va-V nnrvr RS17_ECOLI : 75- 77: kswtl Vr-V vekav RS17_ECOLI : 75- 78: kswtl VrvV ekavl RS17_HAEIN : 75- 77: kswtl Vr-V vekav RS17_HAEIN : 75- 78: kswtl VrvV ekavi RS17_HALMA : 44- 46: dmekt Vv-V ereyd RS17_HALMA : 52- 54: ereyd Vk-V pkydr RS17_HALMA : 98- 100: ktksh Vv-V gvvad RS17_HALMA : 99- 102: tkshv VvgV vadeq RS17_HALMA : 100- 102: kshvv Vg-V vadeq RS17_HALMA : 100- 103: kshvv VgvV adeqd RS17_METVA : 84- 87: aktgd VvkV mecrp RS17_METVA : 85- 87: ktgdv Vk-V mecrp RS17_MYCCA : 24- 26: dktit Vl-V etykn RS17_MYCCA : 77- 79: knfrl Vr-V iekat RS17_PEA : 54- 56: sgnkt Va-V evtrl RS17_PEA : 56- 58: nktva Ve-V trlap RS17_THEMA : 19- 21: kmdkt Vv-V avekl RS17_THEMA : 20- 23: mdktv VvaV eklvq RS17_THEMA : 21- 23: dktvv Va-V eklvq RS17_THETH : 8- 10: kvltg Vv-V sdkmq RS17_THETH : 18- 20: kmqkt Vt-V lverq RS17_THETH : 20- 22: qktvt Vl-V erqfp RS17_THETH : 52- 55: eeryk VgdV veiie RS1W_ARATH : 140- 143: tvrfn VlkV iptga RS1X_ARATH : 140- 143: tvrfn VlkV ipags RS1X_DUNTE : 13- 15: afqkq Vg-V tgcfk RS1X_DUNTE : 139- 142: tirfn VlrV ipqag RS1X_MAIZE : 140- 143: tvrfn VvkV ipags RS1X_MAIZE : 141- 143: vrfnv Vk-V ipags RS1X_SOYBN : 140- 143: tvrfn VlkV ipags RS41_YEAST : 106- 108: krhkn Vp-V hvspa RS41_YEAST : 108- 110: hknvp Vh-V spafr RS41_YEAST : 116- 118: spafr Vq-V gdivt RS41_YEAST : 122- 124: qvgdi Vt-V gqcrp RS41_YEAST : 138- 141: tvrfn VvkV saaag RS41_YEAST : 139- 141: vrfnv Vk-V saaag R 18: 7.8401 44( 22) K-x(0,1)-R Occurences: 44(22) RS11_HUMAN : 20- 22: tifqn KkR vllge RS11_HUMAN : 21- 22: ifqnk K-R vllge RS11_HUMAN : 104- 105: ynrfe K-R hknms RS11_XENLA : 20- 22: tifqn KkR vlege RS11_XENLA : 21- 22: ifqnk K-R vlege RS11_XENLA : 104- 105: ynrfe K-R hknms RS17_ACYKS : 39- 40: ygkfi K-R ttklh RS17_ARATH : 80- 81: phpky K-R rvrmk RS17_ARATH : 80- 82: phpky KrR vrmkk RS17_ARATH : 108- 110: vvrle KsR piskt RS17_BACST : 37- 38: hplyg K-R vkysk RS17_BACST : 72- 73: plsat K-R frlve RS17_BACSU : 37- 38: htlyg K-R vkysk RS17_BACSU : 72- 73: plsat K-R frlve RS17_CHLTR : 74- 75: plskt K-R wrvvg RS17_CYAPA : 4- 6: mas KeR vgvvi RS17_CYAPA : 69- 70: piskt K-R wiise RS17_ECOLI : 3- 5: td KiR tlqgr RS17_ECOLI : 38- 39: ygkfi K-R ttklh RS17_HAEIN : 3- 5: td KiR svqgk RS17_HALMA : 62- 63: ydrfm K-R rsrvp RS17_HALMA : 62- 64: ydrfm KrR srvpa RS17_METVA : 49- 50: ntivi K-R evtgy RS17_METVA : 64- 65: yerye K-R ttslv RS17_MYCCA : 36- 38: nhpiy KkR vkysk RS17_MYCCA : 37- 38: hpiyk K-R vkysk RS17_PEA : 69- 70: hpkyq K-R irlkk RS17_PEA : 96- 98: ivqll KtR piskk RS17_THEMA : 4- 5: mpr K-R ltgiv RS17_THEMA : 37- 38: ykkyv K-R tkkyh RS17_THEMA : 69- 70: plska K-R wrvvr RS17_THETH : 36- 37: ygkvi K-R skkyl RS17_THETH : 66- 67: arpis K-R krfrv RS17_THETH : 68- 69: piskr K-R frvlr RS17_THETH : 99- 100: yasls K-R ggka RS1W_ARATH : 26- 27: isgkg K-R pgkgg RS1W_ARATH : 103- 104: yprye K-R hship RS1X_ARATH : 26- 27: ksgkg K-R pgkgg RS1X_ARATH : 103- 104: yqrye K-R hsnip RS1X_DUNTE : 102- 103: yarye K-R htnip RS1X_MAIZE : 103- 104: yqrye K-R hsnip RS1X_SOYBN : 26- 27: ktgkg K-R pgkgg RS1X_SOYBN : 103- 104: yqrye K-R hsnip RS41_YEAST : 28- 29: kvkts K-R tkrwy RS41_YEAST : 31- 32: tskrt K-R wykna RS41_YEAST : 101- 102: ynrye K-R hknvp S 19: 7.8401 70( 22) K-x(2,3)-R Occurences: 70(22) RS11_HUMAN : 32- 35: etgke Klp-R yykni RS11_HUMAN : 81- 84: vvtkm Kmq-R tivir RS11_HUMAN : 98- 101: lhyir Kyn-R fekrh RS11_HUMAN : 136- 139: crpls Ktv-R fnvlk RS11_XENLA : 32- 35: etgke Klp-R yyrsv RS11_XENLA : 45- 48: vglgf Ktp-R eaidg RS11_XENLA : 81- 84: vvtkm Kmq-R tivir RS11_XENLA : 98- 101: lhyir Kyn-R fekrh RS11_XENLA : 136- 139: crpls Ktv-R fnvlk RS17_ACYKS : 36- 40: hpiyg KfikR ttklh RS17_ARATH : 78- 81: laphp Kyk-R rvrmk RS17_ARATH : 78- 82: laphp KykrR vrmkk RS17_ARATH : 80- 84: phpky KrrvR mkkky RS17_BACST : 72- 75: plsat Krf-R lveiv RS17_BACSU : 72- 75: plsat Krf-R lvevv RS17_CHLTR : 40- 43: hpqya Kvv-R dssky RS17_CHLTR : 72- 75: trpls Ktk-R wrvvg RS17_CHLTR : 74- 77: plskt Krw-R vvgrv RS17_CYAPA : 34- 38: hnkys KiiiR tkkyq RS17_CYAPA : 67- 70: vkpis Ktk-R wiise RS17_ECOLI : 35- 39: hpiyg KfikR ttklh RS17_HAEIN : 35- 38: hplyg Kfi-R rttkl RS17_HAEIN : 35- 39: hplyg KfirR ttklh RS17_HALMA : 56- 59: dvkvp Kyd-R fmkrr RS17_HALMA : 62- 66: ydrfm KrrsR vpaha RS17_METVA : 58- 61: tgyis Kye-R yekrt RS17_MYCCA : 72- 75: plskt Knf-R lvrvi RS17_PEA : 66- 70: laphp KyqkR irlkk RS17_PEA : 69- 72: hpkyq Kri-R lkkky RS17_THEMA : 34- 38: hplyk KyvkR tkkyh RS17_THEMA : 67- 70: trpls Kak-R wrvvr RS17_THEMA : 69- 72: plska Krw-R vvrii RS17_THETH : 33- 37: hplyg KvikR skkyl RS17_THETH : 66- 69: arpis Krk-R frvlr RS17_THETH : 68- 71: piskr Krf-R vlrlv RS17_THETH : 86- 90: ldlve KylvR rqnya RS1W_ARATH : 24- 27: skisg Kgk-R pgkgg RS1W_ARATH : 30- 34: gkrpg KggnR fwkni RS1W_ARATH : 44- 47: iglgf Ktp-R eaidg RS1W_ARATH : 80- 83: tchsa Kmq-R tiivr RS1W_ARATH : 96- 100: ylhfv KkypR yekrh RS1W_ARATH : 97- 100: lhfvk Kyp-R yekrh RS1W_ARATH : 134- 137: crpls Ktv-R fnvlk RS1X_ARATH : 24- 27: skksg Kgk-R pgkgg RS1X_ARATH : 30- 34: gkrpg KggnR fwkni RS1X_ARATH : 44- 47: iglgf Ktp-R eaidg RS1X_ARATH : 80- 83: tchsa Kmq-R tiivr RS1X_ARATH : 96- 100: ylhfv KkyqR yekrh RS1X_ARATH : 97- 100: lhfvk Kyq-R yekrh RS1X_ARATH : 134- 137: crpls Ktv-R fnvlk RS1X_DUNTE : 29- 33: kkapg KsghR ffknv RS1X_DUNTE : 79- 82: vvkss Kmm-R tiivr RS1X_DUNTE : 96- 99: lhfip Kya-R yekrh RS1X_DUNTE : 133- 136: crpls Kti-R fnvlr RS1X_MAIZE : 30- 34: gkkpg KggnR fwksi RS1X_MAIZE : 44- 47: iglgf Ktp-R eaieg RS1X_MAIZE : 80- 83: tchsa Kmn-R tiivr RS1X_MAIZE : 96- 100: ylhfv KkyqR yekrh RS1X_MAIZE : 97- 100: lhfvk Kyq-R yekrh RS1X_MAIZE : 134- 137: crpls Ktv-R fnvvk RS1X_SOYBN : 24- 27: tkktg Kgk-R pgkgg RS1X_SOYBN : 30- 34: gkrpg KggnR fwksi RS1X_SOYBN : 44- 47: iglgf Ktp-R eaieg RS1X_SOYBN : 80- 83: tchsa Kmn-R tiivr RS1X_SOYBN : 96- 100: ylhfi KkyqR yekrh RS1X_SOYBN : 97- 100: lhfik Kyq-R yekrh RS1X_SOYBN : 134- 137: crpls Ktv-R fnvlk RS41_YEAST : 25- 29: nnpkv KtskR tkrwy RS41_YEAST : 28- 32: kvkts KrtkR wykna RS41_YEAST : 78- 81: tvvst Kmh-R tivir RS41_YEAST : 95- 98: lhyip Kyn-R yekrh RS41_YEAST : 132- 135: crpis Ktv-R fnvvk T 20: 7.8401 35( 22) L-x(0,1)-S Occurences: 35(22) RS11_HUMAN : 73- 74: irgri L-S gvvtk RS11_HUMAN : 113- 114: nmsvh L-S pcfrd RS11_HUMAN : 134- 135: gecrp L-S ktvrf RS11_XENLA : 73- 74: irgri L-S gvvtk RS11_XENLA : 113- 114: nmsvh L-S pcfrd RS11_XENLA : 134- 135: gecrp L-S ktvrf RS17_ACYKS : 67- 68: recrp L-S ktksw RS17_ARATH : 6- 8: mitss LtS slqal RS17_ARATH : 15- 16: lqalk L-S spfah RS17_ARATH : 15- 17: lqalk LsS pfahg RS17_ARATH : 26- 27: hgstp L-S slskp RS17_ARATH : 26- 28: hgstp LsS lskpn RS17_ARATH : 29- 30: tplss L-S kpnsf RS17_ARATH : 143- 145: llglp LeS qqpa RS17_BACST : 68- 69: metrp L-S atkrf RS17_BACSU : 68- 69: metrp L-S atkrf RS17_CHLTR : 70- 71: qetrp L-S ktkrw RS17_CYAPA : 77- 78: iisev L-S stvnp RS17_CYAPA : 77- 79: iisev LsS tvnpe RS17_ECOLI : 66- 67: recrp L-S ktksw RS17_HAEIN : 66- 67: recrp L-S ktksw RS17_HALMA : 24- 25: pfhge L-S vrgqt RS17_HALMA : 91- 92: aecrp L-S ktksh RS17_METVA : 26- 27: pfhgt L-S vrgqi RS17_MYCCA : 68- 69: metrp L-S ktknf RS17_PEA : 129- 131: elgip LqS qqe RS17_THEMA : 65- 66: eetrp L-S kakrw RS17_THETH : 97- 98: qnyas L-S krggk RS1W_ARATH : 17- 18: qpkvf L-S skisg RS1W_ARATH : 17- 19: qpkvf LsS kisgk RS1W_ARATH : 132- 133: gqcrp L-S ktvrf RS1X_ARATH : 17- 18: qpkvf L-S skksg RS1X_ARATH : 17- 19: qpkvf LsS kksgk RS1X_ARATH : 132- 133: gqcrp L-S ktvrf RS1X_DUNTE : 131- 132: gqcrp L-S ktirf RS1X_MAIZE : 17- 18: qpkvf L-S skksg RS1X_MAIZE : 17- 19: qpkvf LsS kksgk RS1X_MAIZE : 132- 133: gqcrp L-S ktvrf RS1X_SOYBN : 17- 18: qpkvf L-S tkktg RS1X_SOYBN : 132- 133: gqcrp L-S ktvrf RS41_YEAST : 62- 64: cpftg LvS irgki Number of patterns evaluated by Pratt:245 Total running time: 0 seconds