------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 25 sequences from file RIBOSOMAL_S15

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 25
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               50
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename       RIBOSOMAL_S15.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    RS13_BRUPA    150
    RS13_CANMA    150
    RS13_DROME    150
    RS13_HUMAN    150
    RS13_MAIZE    151
    RS13_MUSDO    114
      RS13_PEA    151
    RS13_SCHPO    150
    RS13_YEAST     40
    RS15_BACST     88
    RS15_BACSU     36
    RS15_ECOLI     88
    RS15_HAEIN     88
    RS15_HALMA    155
    RS15_MAIZE     90
    RS15_MARPO     88
    RS15_MYCHR     81
    RS15_MYCHY     88
    RS15_ORYSA     90
    RS15_PHOLU     88
    RS15_PINTH     88
    RS15_SECCE     90
    RS15_THETH     21
    RS15_TOBAC     87
    RT28_YEAST    286

Pratt run started at Thu Feb  6 21:06:07 1997

No patterns found