------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file RIBOSOMAL_S13 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_S13.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RS13_ARATH 169 RS13_BACST 119 RS13_BACSU 120 RS13_CHLTR 118 RS13_ECOLI 117 RS13_HAEIN 121 RS13_HALMA 177 RS13_LACLA 50 RS13_MYCBO 123 RS13_SULAC 184 RS13_THETH 24 RS18_ARATH 152 RS18_DROME 152 RS18_HUMAN 152 RS18_YEAST 120 RT13_ACACA 119 RT13_DAUCA 116 RT13_MAIZE 129 RT13_MARPO 120 RT13_OENBE 114 RT13_PROWI 119 RT13_TOBAC 116 RT13_WHEAT 116 Pratt run started at Thu Feb 6 21:06:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 67( 23) L-x(3,4)-G 2: 7.8401 57( 23) I-x(4,5)-I 3: 7.3401 48( 23) A-x(3,5)-I 4: 7.3401 53( 23) V-x(1,3)-L 5: 7.3401 52( 23) V-x(2,4)-L 6: 7.3401 64( 23) R-x(1,3)-K 7: 7.3401 62( 23) A-x(1,3)-I 8: 7.3401 103( 23) R-x(0,2)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 67( 23) L-x(3,4)-G B 2: 7.8401 57( 23) I-x(4,5)-I C 3: 7.3401 48( 23) A-x(3,5)-I D 4: 7.3401 53( 23) V-x(1,3)-L E 5: 7.3401 52( 23) V-x(2,4)-L F 6: 7.3401 64( 23) R-x(1,3)-K G 7: 7.3401 62( 23) A-x(1,3)-I H 8: 7.3401 103( 23) R-x(0,2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 67( 23) L-x(3,4)-G Occurences: 67(23) RS13_ARATH : 65- 70: rieys LqyihG igrtr RS13_ARATH : 140- 144: rhiqg Lpcr-G qrtkn RS13_BACST : 18- 23: rvvis LtyiyG igkpt RS13_BACST : 32- 36: ptaqi Lkea-G vsedt RS13_BACST : 61- 65: eivgr Lkve-G dlrre RS13_BACST : 78- 82: lnikr Lmei-G cyrgl RS13_BACST : 87- 92: gcyrg LrhrrG lpvrg RS13_BACST : 93- 97: rhrrg Lpvr-G qntkn RS13_BACSU : 18- 23: rvvis LtyifG igrtt RS13_BACSU : 33- 37: taqqv Lkea-G vsedt RS13_BACSU : 62- 66: diidk Lkve-G dlrre RS13_BACSU : 79- 83: lnikr Liei-G syrgi RS13_BACSU : 94- 98: rhrrg Lpvr-G qnskn RS13_CHLTR : 18- 23: karis LtyifG igpti RS13_ECOLI : 18- 23: havia LtsiyG vgktr RS13_ECOLI : 33- 37: rskai Laaa-G iaedv RS13_ECOLI : 79- 83: msikr Lmdl-G cyrgl RS13_ECOLI : 82- 87: krlmd LgcyrG lrhrr RS13_ECOLI : 88- 93: gcyrg LrhrrG lpvrg RS13_ECOLI : 94- 98: rhrrg Lpvr-G qrtkt RS13_HAEIN : 18- 23: havia LtaiyG igktr RS13_HAEIN : 55- 60: eqidk LrdevG kftve RS13_HAEIN : 79- 83: lnikr Lldl-G cyrgl RS13_HAEIN : 82- 87: krlld LgcyrG lrhrr RS13_HAEIN : 94- 98: rhrrs Lpvr-G qrtkt RS13_HALMA : 41- 46: svera LtelnG ighra RS13_HALMA : 44- 48: ralte Lngi-G hraar RS13_LACLA : 18- 23: rivis LtyvfG vglqt RS13_LACLA : 33- 37: tskkv Laaa-G vsedi RS13_MYCBO : 19- 24: rmeva LtyifG igrtr RS13_MYCBO : 34- 38: rsnei Laat-G idrdl RS13_MYCBO : 64- 68: yiean Lkve-G dlrre RS13_MYCBO : 90- 95: gcyqg LrhrrG mpvrg RS13_SULAC : 27- 32: klpya LamikG igynt RS13_SULAC : 109- 113: qlemi Lrgr-G rsrsw RS13_SULAC : 127- 131: rhslg Lkvr-G qrtrt RS13_SULAC : 174- 179: qrnkl LgdldG rsqke RS13_THETH : 18- 23: rvdva LtyiyG i RS18_ARATH : 30- 35: kimfa LtsikG igrrl RS18_ARATH : 123- 128: rnhrg LrhywG lrvrg RS18_ARATH : 129- 133: rhywg Lrvr-G qhtkt RS18_DROME : 52- 57: kadvd LtkraG ectee RS18_DROME : 123- 128: rshrg LrhywG lrvrg RS18_DROME : 129- 133: rhywg Lrvr-G qhtkt RS18_HUMAN : 52- 57: kadid LtkraG elted RS18_HUMAN : 123- 128: rahrg LrhfwG lrvrg RS18_HUMAN : 129- 133: rhfwg Lrvr-G qhtkt RS18_YEAST : 6- 11: efgya LttikG vgrry RS18_YEAST : 28- 33: kadvd LhkraG eltqe RS18_YEAST : 105- 109: rhfwg Lrvr-G qhtkt RT13_ACACA : 23- 28: nifsa LkdihG vnlkk RT13_ACACA : 97- 101: rhilk Lpvr-G qrtht RT13_DAUCA : 2- 6: m Lyis-G arlva RT13_DAUCA : 19- 24: qvria LtkmyG igpkk RT13_DAUCA : 37- 41: qvcyr Lgis-G nikik RT13_DAUCA : 96- 100: rhqdg Lplr-G qrtht RT13_MAIZE : 33- 38: kkaiq LryrlG isgni RT13_MAIZE : 37- 41: qlryr Lgis-G nikih RT13_MARPO : 19- 24: qvkia LtrifG igpkk RT13_MARPO : 81- 85: rdikr Lisi-G cyrgf RT13_MARPO : 96- 100: rhnag Lplr-G qrtht RT13_OENBE : 94- 98: rhqdg Lplr-G qrsht RT13_PROWI : 96- 100: rhiqg Lpvr-G qrshg RT13_TOBAC : 2- 6: m Lyis-G arlvg RT13_TOBAC : 37- 41: qvryr Lgis-G nikik RT13_WHEAT : 33- 38: kkaiq LryrlG isgni RT13_WHEAT : 37- 41: qlryr Lgis-G nikmn B 2: 7.8401 57( 23) I-x(4,5)-I Occurences: 57(23) RS13_ARATH : 55- 61: vggve IpankrI eyslq RS13_ARATH : 122- 128: fnala IkrlkeI qcyrg RS13_BACST : 3- 8: ar Iagvd-I prdkr RS13_BACST : 16- 21: dkrvv Islty-I ygigk RS13_BACST : 75- 81: evsln IkrlmeI gcyrg RS13_BACSU : 3- 8: ar Iagvd-I prdkr RS13_BACSU : 16- 21: dkrvv Islty-I fgigr RS13_BACSU : 76- 82: evsln IkrlieI gsyrg RS13_BACSU : 82- 88: krlie IgsyrgI rhrrg RS13_CHLTR : 16- 21: nkkar Islty-I fgigp RS13_CHLTR : 76- 82: einln IkrlmeI ksyrv RS13_CHLTR : 82- 88: krlme IksyrvI rhrkd RS13_ECOLI : 3- 8: ar Iagin-I pdhkh RS13_ECOLI : 16- 21: hkhav Ialts-I ygvgk RS13_ECOLI : 32- 38: trska IlaaagI aedvk RS13_ECOLI : 38- 44: laaag IaedvkI selse RS13_HAEIN : 3- 8: ar Iagin-I pdhkh RS13_HAEIN : 16- 21: hkhav Ialta-I ygigk RS13_HAEIN : 32- 38: trsqa IcaaagI aedvk RS13_HAEIN : 38- 44: caaag IaedvkI relse RS13_HALMA : 20- 26: eeeed IryfvrI gqtdl RS13_HALMA : 121- 127: trrqd InrmkmI dsyrg RS13_LACLA : 8- 14: fagvd IpnekrI vislt RS13_MYCBO : 33- 39: trsne IlaatgI drdlr RS13_MYCBO : 54- 60: teeql IhlrdyI eanlk RS13_MYCBO : 78- 84: evqad IrrkieI gcyqg RS13_SULAC : 56- 61: krlge Isded-I kkien RS13_THETH : 3- 8: ar Iagve-I prnkr RS18_ARATH : 64- 70: lsaae IdnlmtI vanpr RS18_DROME : 15- 20: qhilr Imntn-I dgkrk RS18_DROME : 28- 33: krkvg Iamta-I kgvgr RS18_HUMAN : 20- 26: vlntn IdgrrkI afait RS18_YEAST : 93- 99: erlkk IrahrgI rhfwg RT13_ACACA : 60- 65: elfsl Ikkqa-I ffynl RT13_DAUCA : 25- 31: tkmyg IgpkkaI qvcyr RT13_DAUCA : 39- 45: cyrlg IsgnikI keltk RT13_DAUCA : 78- 84: gerad IerfisI scyrg RT13_DAUCA : 84- 90: erfis IscyrgI rhqdg RT13_MAIZE : 25- 31: tkmdg IgpkkaI qlryr RT13_MAIZE : 39- 45: ryrlg IsgnikI heltk RT13_MAIZE : 78- 84: gerad IerlisI sryrg RT13_MAIZE : 84- 90: erlis IsryrgI rhqdg RT13_MARPO : 17- 22: nkqvk Ialtr-I fgigp RT13_MARPO : 25- 31: trifg IgpkkaI qvcdq RT13_MARPO : 78- 84: viqrd IkrlisI gcyrg RT13_OENBE : 25- 31: tkmdg IgpkkaI qvrsr RT13_OENBE : 76- 82: gerad IerfisI scyrg RT13_OENBE : 82- 88: erfis IscyrgI rhqdg RT13_PROWI : 78- 84: ftrqn IqrlvnI hsyrg RT13_TOBAC : 17- 22: deqvr Iastk-I dgigp RT13_TOBAC : 25- 31: tkidg IgpkkaI qvryr RT13_TOBAC : 39- 45: ryrlg IsgnikI keltk RT13_TOBAC : 78- 84: gerad IerlisI scyrg RT13_TOBAC : 84- 90: erlis IscyrgI rhqdg RT13_WHEAT : 25- 31: tkmdg IgpkkaI qlryr RT13_WHEAT : 78- 84: gerad IerlisI sryrg RT13_WHEAT : 84- 90: erlis IsryrgI rhqdg C 3: 7.3401 48( 23) A-x(3,5)-I Occurences: 48(23) RS13_ARATH : 10- 16: vampv AhslslI cnwak RS13_ARATH : 57- 61: gveip Ankr--I eyslq RS13_ARATH : 94- 99: itkdm Aeeel-I ilrde RS13_ARATH : 94- 100: itkdm AeeeliI lrdev RS13_BACST : 4- 8: ari Agvd--I prdkr RS13_BACSU : 4- 8: ari Agvd--I prdkr RS13_CHLTR : 1- 6: Arvln-I eipnn RS13_ECOLI : 1- 6: Ariag-I nipdh RS13_ECOLI : 4- 8: ari Agin--I pdhkh RS13_ECOLI : 17- 21: khavi Alts--I ygvgk RS13_ECOLI : 34- 38: skail Aaag--I aedvk RS13_ECOLI : 39- 44: aaagi Aedvk-I selse RS13_HAEIN : 1- 6: Ariag-I nipdh RS13_HAEIN : 4- 8: ari Agin--I pdhkh RS13_HAEIN : 17- 21: khavi Alta--I ygigk RS13_HAEIN : 20- 24: vialt Aiyg--I gktrs RS13_HAEIN : 34- 38: sqaic Aaag--I aedvk RS13_HAEIN : 39- 44: aaagi Aedvk-I relse RS13_HALMA : 14- 20: gedad AeeeedI ryfvr RS13_HALMA : 51- 55: gighr Aari--I aqkad RS13_LACLA : 4- 8: arf Agvd--I pnekr RS13_LACLA : 36- 42: kvlaa AgvsedI rtkdl RS13_MYCBO : 18- 22: krmev Alty--I fgigr RS13_MYCBO : 35- 39: sneil Aatg--I drdlr RS13_MYCBO : 76- 82: rrevq AdirrkI eigcy RS13_SULAC : 26- 30: mklpy Alam--I kgigy RS13_SULAC : 28- 33: lpyal Amikg-I gynta RS13_SULAC : 38- 42: igynt Amii--I rklnl RS13_THETH : 4- 8: ari Agve--I prnkr RS13_THETH : 17- 21: krvdv Alty--I ygi RS18_ARATH : 29- 33: qkimf Alts--I kgigr RS18_DROME : 29- 33: rkvgi Amta--I kgvgr RS18_HUMAN : 27- 33: grrki AfaitaI kgvgr RS18_HUMAN : 29- 33: rkiaf Aita--I kgvgr RS18_YEAST : 5- 9: efgy Altt--I kgvgr RS18_YEAST : 95- 99: lkkir Ahrg--I rhfwg RT13_ACACA : 22- 26: knifs Alkd--I hgvnl RT13_DAUCA : 11- 17: garlv AdkqvrI altkm RT13_DAUCA : 76- 82: krger AdierfI siscy RT13_MAIZE : 76- 82: krger AdierlI sisry RT13_MAIZE : 110- 114: tnart Arkq--I wkgne RT13_MARPO : 18- 22: kqvki Altr--I fgigp RT13_OENBE : 11- 17: garlv AdeqvrI astkm RT13_OENBE : 74- 80: krger AdierfI siscy RT13_PROWI : 18- 22: kqiyq Acaq--I yglgh RT13_TOBAC : 18- 22: eqvri Astk--I dgigp RT13_TOBAC : 76- 82: krger AdierlI siscy RT13_WHEAT : 76- 82: krger AdierlI sisry RT13_WHEAT : 110- 114: tnart Arkq--I rk D 4: 7.3401 53( 23) V-x(1,3)-L Occurences: 53(23) RS13_ARATH : 9- 13: mvamp VahsL slicn RS13_ARATH : 81- 83: arqil Vd--L qmenk RS13_BACST : 14- 18: prdkr VvisL tyiyg RS13_BACST : 15- 18: rdkrv Vis-L tyiyg RS13_BACST : 43- 46: sedtr Vrd-L teeel RS13_BACST : 58- 61: rirei Vgr-L kvegd RS13_BACST : 63- 67: vgrlk VegdL rrevs RS13_BACST : 71- 73: dlrre Vs--L nikrl RS13_BACSU : 14- 18: prdkr VvisL tyifg RS13_BACSU : 15- 18: rdkrv Vis-L tyifg RS13_BACSU : 44- 47: sedtr Vrd-L teeel RS13_BACSU : 64- 68: idklk VegdL rrevs RS13_BACSU : 72- 74: dlrre Vs--L nikrl RS13_CHLTR : 44- 47: dgekr Vke-L teeel RS13_ECOLI : 15- 18: dhkha Via-L tsiyg RS13_ECOLI : 64- 68: vakfv VegdL rreis RS13_HAEIN : 15- 18: dhkha Via-L taiyg RS13_HAEIN : 64- 68: vgkft VegdL rrevt RS13_HAEIN : 72- 74: dlrre Vt--L nikrl RS13_HALMA : 37- 41: dgtks VeraL telng RS13_HALMA : 66- 70: vdrra VfgkL dddvi RS13_LACLA : 15- 18: nekri Vis-L tyvfg RS13_LACLA : 24- 26: tyvfg Vg--L qtskk RS13_MYCBO : 5- 9: mdrl VgvdL prhkr RS13_MYCBO : 7- 9: drlvg Vd--L prhkr RS13_MYCBO : 17- 19: hkrme Va--L tyifg RS13_MYCBO : 66- 70: eanlk VegdL rrevq RS13_SULAC : 10- 12: qfkyi Vr--L fgqdv RS13_SULAC : 96- 100: admhl VtsdL iflql RS13_SULAC : 121- 125: rswrg VrhsL glkvr RS13_THETH : 14- 18: prnkr VdvaL tyiyg RS13_THETH : 16- 18: nkrvd Va--L tyiyg RS18_ARATH : 99- 103: kysqv VsnaL dmklr RS18_DROME : 50- 52: lkkad Vd--L tkrag RS18_HUMAN : 43- 45: rryah Vv--L rkadi RS18_YEAST : 26- 28: ckkad Vd--L hkrag RS18_YEAST : 79- 83: tlann VeskL rddle RT13_ACACA : 29- 31: kdihg Vn--L kkink RT13_ACACA : 40- 43: nkmgl Vmg-L dkfek RT13_DAUCA : 15- 19: vadkq VriaL tkmyg RT13_DAUCA : 33- 37: kkaiq VcyrL gisgn RT13_DAUCA : 66- 70: gqdhv VhweL krger RT13_MAIZE : 66- 70: aqdhv VhweL krger RT13_MARPO : 15- 19: nsnkq VkiaL trifg RT13_MARPO : 33- 37: kkaiq VcdqL glsdt RT13_MARPO : 45- 48: sdtik Vnk-L tkyqf RT13_MARPO : 66- 70: sqnyl VdseL krviq RT13_OENBE : 33- 37: kkaiq VrsrL ggnik RT13_OENBE : 64- 68: gqdhv VhweL krger RT13_PROWI : 110- 113: gnart Vrk-L knvik RT13_TOBAC : 33- 37: kkaiq VryrL gisgn RT13_TOBAC : 66- 70: gqdhv VhweL krger RT13_WHEAT : 66- 70: aqdhv VhweL krger E 5: 7.3401 52( 23) V-x(2,4)-L Occurences: 52(23) RS13_ARATH : 9- 13: mvamp Vahs-L slicn RS13_BACST : 14- 18: prdkr Vvis-L tyiyg RS13_BACST : 15- 18: rdkrv Vis--L tyiyg RS13_BACST : 43- 46: sedtr Vrd--L teeel RS13_BACST : 58- 61: rirei Vgr--L kvegd RS13_BACST : 63- 67: vgrlk Vegd-L rrevs RS13_BACSU : 14- 18: prdkr Vvis-L tyifg RS13_BACSU : 15- 18: rdkrv Vis--L tyifg RS13_BACSU : 44- 47: sedtr Vrd--L teeel RS13_BACSU : 64- 68: idklk Vegd-L rrevs RS13_CHLTR : 44- 47: dgekr Vke--L teeel RS13_ECOLI : 15- 18: dhkha Via--L tsiyg RS13_ECOLI : 42- 47: giaed VkiseL segqi RS13_ECOLI : 63- 68: evakf VvegdL rreis RS13_ECOLI : 64- 68: vakfv Vegd-L rreis RS13_HAEIN : 15- 18: dhkha Via--L taiyg RS13_HAEIN : 42- 47: giaed VkireL seeqi RS13_HAEIN : 64- 68: vgkft Vegd-L rrevt RS13_HALMA : 37- 41: dgtks Vera-L telng RS13_HALMA : 66- 70: vdrra Vfgk-L dddvi RS13_LACLA : 15- 18: nekri Vis--L tyvfg RS13_LACLA : 21- 26: islty VfgvgL qtskk RS13_MYCBO : 5- 9: mdrl Vgvd-L prhkr RS13_MYCBO : 66- 70: eanlk Vegd-L rrevq RS13_SULAC : 96- 100: admhl Vtsd-L iflql RS13_SULAC : 121- 125: rswrg Vrhs-L glkvr RS13_THETH : 14- 18: prnkr Vdva-L tyiyg RS18_ARATH : 98- 103: gkysq VvsnaL dmklr RS18_ARATH : 99- 103: kysqv Vsna-L dmklr RS18_DROME : 79- 84: plqyk VpnwfL nrqkd RS18_HUMAN : 98- 103: gkysq VlangL dnklr RS18_YEAST : 79- 83: tlann Vesk-L rddle RT13_ACACA : 40- 43: nkmgl Vmg--L dkfek RT13_DAUCA : 15- 19: vadkq Vria-L tkmyg RT13_DAUCA : 33- 37: kkaiq Vcyr-L gisgn RT13_DAUCA : 65- 70: igqdh VvhweL krger RT13_DAUCA : 66- 70: gqdhv Vhwe-L krger RT13_MAIZE : 65- 70: iaqdh VvhweL krger RT13_MAIZE : 66- 70: aqdhv Vhwe-L krger RT13_MARPO : 15- 19: nsnkq Vkia-L trifg RT13_MARPO : 33- 37: kkaiq Vcdq-L glsdt RT13_MARPO : 45- 48: sdtik Vnk--L tkyqf RT13_MARPO : 66- 70: sqnyl Vdse-L krviq RT13_OENBE : 33- 37: kkaiq Vrsr-L ggnik RT13_OENBE : 63- 68: rgqdh VvhweL krger RT13_OENBE : 64- 68: gqdhv Vhwe-L krger RT13_PROWI : 110- 113: gnart Vrk--L knvik RT13_TOBAC : 33- 37: kkaiq Vryr-L gisgn RT13_TOBAC : 65- 70: igqdh VvhweL krger RT13_TOBAC : 66- 70: gqdhv Vhwe-L krger RT13_WHEAT : 65- 70: iaqdh VvhweL krger RT13_WHEAT : 66- 70: aqdhv Vhwe-L krger F 6: 7.3401 64( 23) R-x(1,3)-K Occurences: 64(23) RS13_ARATH : 124- 126: alaik Rl--K eiqcy RS13_ARATH : 146- 148: pcrgq Rt--K nncrt RS13_ARATH : 152- 155: tknnc Rtl-K gkkia RS13_BACST : 10- 12: gvdip Rd--K rvvis RS13_BACST : 60- 62: reivg Rl--K vegdl RS13_BACST : 105- 108: tknna Rtr-K gprrt RS13_BACSU : 10- 12: gvdip Rd--K rvvis RS13_BACSU : 106- 109: sknna Rtr-K gprrt RS13_CHLTR : 43- 45: vdgek Rv--K eltee RS13_CHLTR : 56- 60: eltri RdeaK kytte RS13_CHLTR : 89- 92: syrvi Rhr-K dtckr RS13_CHLTR : 97- 100: kdtck Rst-K knart RS13_CHLTR : 97- 101: kdtck RstkK nartr RS13_CHLTR : 104- 107: tkkna Rtr-K gpkkd RS13_CHLTR : 106- 110: knart RkgpK kdnrw RS13_CHLTR : 114- 116: pkkdn Rw--K er RS13_ECOLI : 28- 30: gvgkt Rs--K ailaa RS13_ECOLI : 100- 102: pvrgq Rt--K tnart RS13_ECOLI : 106- 109: tktna Rtr-K gprkp RS13_ECOLI : 112- 116: trkgp RkpiK k RS13_HAEIN : 100- 102: pvrgq Rt--K tnart RS13_HAEIN : 106- 109: tktna Rtr-K vhvsr RS13_HAEIN : 114- 116: kvhvs Rs--K nsrgk RS13_HAEIN : 119- 121: rskns Rg--K RS13_HALMA : 123- 125: rqdin Rm--K midsy RS13_HALMA : 134- 136: syrgv Rh--K rgqkv RS13_HALMA : 137- 140: gvrhk Rgq-K vrgqr RS13_HALMA : 145- 147: kvrgq Rt--K stgrt RS13_LACLA : 43- 45: vsedi Rt--K dltsd RS13_MYCBO : 11- 13: gvdlp Rh--K rmeva RS13_MYCBO : 79- 81: vqadi Rr--K ieigc RS13_MYCBO : 102- 104: pvrgq Rt--K tnart RS13_MYCBO : 108- 111: tktna Rtr-K gpkah RS13_MYCBO : 110- 114: tnart RkgpK ahhrr RS13_SULAC : 83- 85: nwiyn Rq--K dyesg RS13_SULAC : 147- 150: atigv Rra-K agqpq RS13_SULAC : 148- 150: tigvr Ra--K agqpq RS13_SULAC : 165- 168: qldpq Rve-K qrnkl RS13_SULAC : 170- 172: rvekq Rn--K llgdl RS13_SULAC : 180- 183: gdldg Rsq-K e RS13_THETH : 10- 12: gveip Rn--K rvdva RS18_ARATH : 75- 78: ivanp Rqf-K ipdwf RS18_ARATH : 86- 88: dwfln Rq--K dykdg RS18_ARATH : 113- 115: rddle Rl--K kirnh RS18_ARATH : 113- 116: rddle Rlk-K irnhr RS18_ARATH : 141- 144: tkttg Rrg-K tvgvs RS18_ARATH : 142- 144: kttgr Rg--K tvgvs RS18_DROME : 86- 88: nwfln Rq--K diidg RS18_DROME : 113- 115: rddle Rl--K kirsh RS18_DROME : 113- 116: rddle Rlk-K irshr RS18_HUMAN : 23- 25: tnidg Rr--K iafai RS18_HUMAN : 75- 78: imqnp Rqy-K ipdwf RS18_HUMAN : 86- 88: dwfln Rq--K dvkdg RS18_HUMAN : 113- 115: redle Rl--K kirah RS18_HUMAN : 113- 116: redle Rlk-K irahr RS18_YEAST : 89- 91: rddle Rl--K kirah RS18_YEAST : 89- 92: rddle Rlk-K irahr RT13_ACACA : 92- 96: nytgm RhilK lpvrg RT13_DAUCA : 108- 112: thtna RtcrK qirk RT13_MAIZE : 108- 112: thtna RtarK qiwkg RT13_MAIZE : 120- 124: wkgne RrlpK eqatd RT13_MAIZE : 121- 124: kgner Rlp-K eqatd RT13_MARPO : 76- 79: krviq Rdi-K rlisi RT13_OENBE : 106- 110: shtna RtsrK rirk RT13_OENBE : 111- 114: rtsrk Rir-K RT13_PROWI : 108- 112: shgna RtvrK lknvi RT13_PROWI : 111- 114: nartv Rkl-K nviki RT13_TOBAC : 108- 112: thtna RtcrK lirk RT13_WHEAT : 108- 112: thtna RtarK qirk G 7: 7.3401 62( 23) A-x(1,3)-I Occurences: 62(23) RS13_ARATH : 57- 61: gveip AnkrI eyslq RS13_ARATH : 76- 79: igrtr Arq-I lvdlq RS13_ARATH : 119- 122: lrrfn Ala-I krlke RS13_BACST : 1- 3: Ar--I agvdi RS13_BACST : 4- 8: ari AgvdI prdkr RS13_BACST : 29- 31: igkpt Aq--I lkeag RS13_BACSU : 1- 3: Ar--I agvdi RS13_BACSU : 4- 8: ari AgvdI prdkr RS13_CHLTR : 14- 16: pnnkk Ar--I sltyi RS13_CHLTR : 29- 32: igpti Akq-I ladan RS13_ECOLI : 1- 3: Ar--I agini RS13_ECOLI : 4- 6: ari Ag--I nipdh RS13_ECOLI : 4- 8: ari AginI pdhkh RS13_ECOLI : 14- 16: pdhkh Av--I altsi RS13_ECOLI : 17- 21: khavi AltsI ygvgk RS13_ECOLI : 34- 38: skail AaagI aedvk RS13_ECOLI : 35- 38: kaila Aag-I aedvk RS13_ECOLI : 36- 38: ailaa Ag--I aedvk RS13_HAEIN : 1- 3: Ar--I agini RS13_HAEIN : 4- 6: ari Ag--I nipdh RS13_HAEIN : 4- 8: ari AginI pdhkh RS13_HAEIN : 14- 16: pdhkh Av--I altai RS13_HAEIN : 17- 21: khavi AltaI ygigk RS13_HAEIN : 20- 24: vialt AiygI gktrs RS13_HAEIN : 34- 38: sqaic AaagI aedvk RS13_HAEIN : 35- 38: qaica Aag-I aedvk RS13_HAEIN : 36- 38: aicaa Ag--I aedvk RS13_HALMA : 51- 54: gighr Aar-I iaqka RS13_HALMA : 51- 55: gighr AariI aqkad RS13_HALMA : 52- 54: ighra Ar--I iaqka RS13_HALMA : 52- 55: ighra Ari-I aqkad RS13_LACLA : 4- 8: arf AgvdI pnekr RS13_MYCBO : 18- 22: krmev AltyI fgigr RS13_MYCBO : 35- 39: sneil AatgI drdlr RS13_MYCBO : 36- 39: neila Atg-I drdlr RS13_MYCBO : 76- 78: rrevq Ad--I rrkie RS13_SULAC : 26- 30: mklpy AlamI kgigy RS13_SULAC : 28- 30: lpyal Am--I kgigy RS13_SULAC : 38- 40: igynt Am--I iirkl RS13_SULAC : 38- 41: igynt Ami-I irkln RS13_SULAC : 38- 42: igynt AmiiI rklnl RS13_SULAC : 142- 144: tgrtg At--I gvrra RS13_THETH : 1- 3: Ar--I agvei RS13_THETH : 4- 8: ari AgveI prnkr RS13_THETH : 17- 21: krvdv AltyI ygi RS18_ARATH : 29- 33: qkimf AltsI kgigr RS18_ARATH : 41- 43: igrrl An--I vckka RS18_ARATH : 61- 64: agels Aae-I dnlmt RS18_ARATH : 62- 64: gelsa Ae--I dnlmt RS18_DROME : 29- 33: rkvgi AmtaI kgvgr RS18_HUMAN : 27- 30: grrki Afa-I taikg RS18_HUMAN : 29- 33: rkiaf AitaI kgvgr RS18_HUMAN : 48- 50: vvlrk Ad--I dltkr RS18_YEAST : 5- 9: efgy AlttI kgvgr RS18_YEAST : 95- 99: lkkir AhrgI rhfwg RT13_ACACA : 22- 26: knifs AlkdI hgvnl RT13_DAUCA : 76- 78: krger Ad--I erfis RT13_MAIZE : 76- 78: krger Ad--I erlis RT13_MAIZE : 110- 114: tnart ArkqI wkgne RT13_MARPO : 18- 22: kqvki AltrI fgigp RT13_OENBE : 74- 76: krger Ad--I erfis RT13_PROWI : 18- 22: kqiyq AcaqI yglgh RT13_PROWI : 20- 22: iyqac Aq--I yglgh RT13_PROWI : 57- 59: qhtll Aq--I itqny RT13_PROWI : 57- 60: qhtll Aqi-I tqnyd RT13_TOBAC : 18- 22: eqvri AstkI dgigp RT13_TOBAC : 76- 78: krger Ad--I erlis RT13_WHEAT : 76- 78: krger Ad--I erlis RT13_WHEAT : 110- 114: tnart ArkqI rk H 8: 7.3401 103( 23) R-x(0,2)-G Occurences: 103(23) RS13_ARATH : 49- 51: sirca Rv-G gveip RS13_ARATH : 49- 52: sirca RvgG veipa RS13_ARATH : 132- 133: eiqcy R--G vrhiq RS13_ARATH : 143- 144: qglpc R--G qrtkn RS13_BACST : 2- 5: a RiaG vdipr RS13_BACST : 85- 86: eigcy R--G lrhrr RS13_BACST : 90- 92: rglrh Rr-G lpvrg RS13_BACST : 91- 92: glrhr R--G lpvrg RS13_BACST : 96- 97: rglpv R--G qntkn RS13_BACST : 107- 109: nnart Rk-G prrtv RS13_BACSU : 2- 5: a RiaG vdipr RS13_BACSU : 86- 87: eigsy R--G irhrr RS13_BACSU : 91- 93: rgirh Rr-G lpvrg RS13_BACSU : 92- 93: girhr R--G lpvrg RS13_BACSU : 97- 98: rglpv R--G qnskn RS13_BACSU : 108- 110: nnart Rk-G prrtv RS13_CHLTR : 106- 108: knart Rk-G pkkdn RS13_ECOLI : 2- 5: a RiaG inipd RS13_ECOLI : 86- 87: dlgcy R--G lrhrr RS13_ECOLI : 91- 93: rglrh Rr-G lpvrg RS13_ECOLI : 92- 93: glrhr R--G lpvrg RS13_ECOLI : 97- 98: rglpv R--G qrtkt RS13_ECOLI : 108- 110: tnart Rk-G prkpi RS13_HAEIN : 2- 5: a RiaG inipd RS13_HAEIN : 86- 87: dlgcy R--G lrhrr RS13_HAEIN : 97- 98: rslpv R--G qrtkt RS13_HAEIN : 119- 120: rskns R--G k RS13_HALMA : 25- 27: iryfv Ri-G qtdld RS13_HALMA : 131- 132: midsy R--G vrhkr RS13_HALMA : 137- 138: gvrhk R--G qkvrg RS13_HALMA : 142- 143: rgqkv R--G qrtks RS13_HALMA : 151- 154: tkstg RteG tigvn RS13_LACLA : 2- 5: a RfaG vdipn RS13_MYCBO : 3- 6: md RlvG vdlpr RS13_MYCBO : 93- 95: qglrh Rr-G mpvrg RS13_MYCBO : 94- 95: glrhr R--G mpvrg RS13_MYCBO : 99- 100: rgmpv R--G qrtkt RS13_MYCBO : 110- 112: tnart Rk-G pkahh RS13_SULAC : 11- 14: fkyiv RlfG qdvdg RS13_SULAC : 52- 54: ldkdk Rl-G eisde RS13_SULAC : 110- 111: lemil R--G rgrsr RS13_SULAC : 110- 113: lemil RgrG rsrsw RS13_SULAC : 112- 113: milrg R--G rsrsw RS13_SULAC : 119- 120: rsrsw R--G vrhsl RS13_SULAC : 130- 131: lglkv R--G qrtrt RS13_SULAC : 135- 138: rgqrt RttG rtgat RS13_SULAC : 139- 141: trttg Rt-G atigv RS13_THETH : 2- 5: a RiaG veipr RS18_ARATH : 55- 57: vdmnk Ra-G elsaa RS18_ARATH : 121- 122: kirnh R--G lrhyw RS18_ARATH : 130- 133: hywgl RvrG qhtkt RS18_ARATH : 132- 133: wglrv R--G qhtkt RS18_ARATH : 141- 143: tkttg Rr-G ktvgv RS18_ARATH : 142- 143: kttgr R--G ktvgv RS18_DROME : 24- 27: nidgk RkvG iamta RS18_DROME : 55- 57: vdltk Ra-G ectee RS18_DROME : 121- 122: kirsh R--G lrhyw RS18_DROME : 130- 133: hywgl RvrG qhtkt RS18_DROME : 132- 133: wglrv R--G qhtkt RS18_DROME : 141- 143: tkttg Rr-G rtvgv RS18_DROME : 142- 143: kttgr R--G rtvgv RS18_DROME : 144- 147: tgrrg RtvG vskkk RS18_HUMAN : 55- 57: idltk Ra-G elted RS18_HUMAN : 121- 122: kirah R--G lrhfw RS18_HUMAN : 130- 133: hfwgl RvrG qhtkt RS18_HUMAN : 132- 133: wglrv R--G qhtkt RS18_HUMAN : 141- 143: tkttg Rr-G rtvgv RS18_HUMAN : 142- 143: kttgr R--G rtvgv RS18_HUMAN : 144- 147: tgrrg RtvG vskkk RS18_YEAST : 31- 33: vdlhk Ra-G eltqe RS18_YEAST : 97- 98: kirah R--G irhfw RS18_YEAST : 106- 109: hfwgl RvrG qhtkt RS18_YEAST : 108- 109: wglrv R--G qhtkt RT13_ACACA : 100- 101: lklpv R--G qrtht RT13_DAUCA : 36- 38: iqvcy Rl-G isgni RT13_DAUCA : 72- 73: hwelk R--G eradi RT13_DAUCA : 88- 89: siscy R--G irhqd RT13_DAUCA : 99- 100: dglpl R--G qrtht RT13_MAIZE : 36- 38: iqlry Rl-G isgni RT13_MAIZE : 72- 73: hwelk R--G eradi RT13_MAIZE : 86- 89: lisis RyrG irhqd RT13_MAIZE : 88- 89: sisry R--G irhqd RT13_MAIZE : 99- 100: dgspl R--G qrtht RT13_MARPO : 21- 24: kialt RifG igpkk RT13_MARPO : 88- 89: sigcy R--G frhna RT13_MARPO : 99- 100: aglpl R--G qrtht RT13_OENBE : 36- 38: iqvrs Rl-G gnikr RT13_OENBE : 36- 39: iqvrs RlgG nikrk RT13_OENBE : 58- 59: qieqm R--G qdhvv RT13_OENBE : 70- 71: hwelk R--G eradi RT13_OENBE : 86- 87: siscy R--G irhqd RT13_OENBE : 97- 98: dglpl R--G qrsht RT13_PROWI : 44- 46: vspet Rl-G mlstg RT13_PROWI : 88- 89: nihsy R--G yrhiq RT13_PROWI : 99- 100: qglpv R--G qrshg RT13_PROWI : 102- 105: pvrgq RshG nartv RT13_TOBAC : 8- 11: yisga RlvG deqvr RT13_TOBAC : 36- 38: iqvry Rl-G isgni RT13_TOBAC : 72- 73: hwelk R--G eradi RT13_TOBAC : 88- 89: siscy R--G irhqd RT13_TOBAC : 99- 100: dgspl R--G qrtht RT13_WHEAT : 36- 38: iqlry Rl-G isgni RT13_WHEAT : 72- 73: hwelk R--G eradi RT13_WHEAT : 86- 89: lisis RyrG irhqd RT13_WHEAT : 88- 89: sisry R--G irhqd RT13_WHEAT : 99- 100: dgspl R--G qrtht Number of patterns evaluated by Pratt:11 Total running time: 1 seconds