------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file RIBOSOMAL_L9 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L9.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL9_ARATH 197 RL9_BACST 149 RL9_BACSU 149 RL9_ECOLI 149 RL9_HAEIN 149 RL9_MYCLE 152 RL9_PEA 194 RL9_SYNEN 152 RL9_SYNY3 172 RL9_THETH 35 Pratt run started at Thu Feb 6 21:06:04 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 25.0203 10( 10) G-x(4)-V-x(2)-G-x(3)-N-x-L-x(3)-G 2: 20.8503 10( 10) V-x(2)-G-x(3)-N-x-L-x(3)-G 3: 16.6802 10( 10) G-x(3)-N-x-L-x(3)-G 4: 12.5102 12( 10) N-x-L-x(3)-G 5: 12.0102 14( 10) N-x(0,1)-L-x(3)-G 6: 11.5102 10( 10) G-x(2)-G-x(2,4)-V 7: 11.0102 12( 10) G-x(2,3)-R-x(0,2)-L 8: 11.0102 12( 10) G-x(1,2)-R-x(0,2)-L 9: 11.0102 12( 10) V-x(0,1)-K-x(1,3)-G 10: 11.0102 16( 10) V-x(0,2)-K-x(1,2)-G 11: 11.0102 11( 10) V-x(1,2)-K-x(1,3)-G 12: 10.5102 13( 10) K-x(1,3)-G-x(1,3)-A 13: 10.5102 15( 10) V-x(3,5)-V-x(0,2)-K 14: 10.5102 15( 10) L-x(2,4)-V-x(1,3)-V 15: 10.5102 17( 10) K-x(0,2)-V-x(1,3)-L 16: 8.3401 16( 10) L-x-P 17: 8.3401 22( 10) L-x(3)-G 18: 8.3401 18( 10) R-x(3)-L 19: 8.3401 19( 10) A-x(3)-L 20: 8.3401 17( 10) G-x-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 33.0548 10( 10) G-[DEQ]-x(3)-V-x(2)-G-x(3)-N-[FY]-L-[FILV]-x(2)-G B 2: 26.2912 10( 10) V-x(2)-G-x(3)-N-[FY]-L-[FILV]-x(2)-G C 3: 22.1212 10( 10) G-x(3)-N-[FY]-L-[FILV]-x(2)-G D 4: 19.1594 11( 10) G-x(2,3)-R-x(0,2)-L-[FILV]-[GP]-x-[GIV] E 5: 19.1594 10( 10) G-x(1,2)-R-x(0,2)-L-[FILV]-[GP]-x-[GIV] F 6: 17.9511 10( 10) N-[FY]-L-[FILV]-x(2)-G G 7: 17.4090 10( 10) G-x(2)-G-x(2,4)-V-x-[ADV]-x(4)-[AN] H 8: 15.1352 10( 10) V-x(0,1)-K-x(1,3)-G-x(3)-[ADENQ]-x(3)-[GPTV] I 9: 15.1352 14( 10) V-x(0,2)-K-x(1,2)-G-x(3)-[ADENQ]-x(3)-[GPTV] J 10: 14.6076 11( 10) N-x(0,1)-L-x(3)-G-x-[ALV] K 11: 14.1234 12( 10) L-x(3)-G-x-[ALV]-x(2)-[AV] L 12: 13.1076 11( 10) L-x(2,4)-V-x(1,3)-V-x-[ALV] M 13: 12.8131 11( 10) A-x-[AENS]-x-L-x(3)-[EGQS] N 14: 11.5277 15( 10) L-x-P-x-[GV] O 15: 11.0102 11( 10) V-x(1,2)-K-x(1,3)-G P 16: 10.5102 13( 10) K-x(1,3)-G-x(1,3)-A Q 17: 10.5102 15( 10) V-x(3,5)-V-x(0,2)-K R 18: 10.5102 17( 10) K-x(0,2)-V-x(1,3)-L S 19: 8.3401 18( 10) R-x(3)-L T 20: 8.3401 19( 10) A-x(3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 33.0548 10( 10) G-[DEQ]-x(3)-V-x(2)-G-x(3)-N-[FY]-L-[FILV]-x(2)-G Occurences: 10(10) RL9_ARATH : 65- 83: dlgkq GQlldVkaGffrNFLLptG kaqlm RL9_BACST : 16- 34: gkgkk GEiknVadGyanNFLFkqG laiea RL9_BACSU : 16- 34: gkgkk GEvknVadGyahNFLIkkG lavea RL9_ECOLI : 16- 34: nlgsl GDqvnVkaGyarNFLVpqG kavpa RL9_HAEIN : 16- 34: hlgqv GDqvnVksGfarNFLIpqG kavma RL9_MYCLE : 16- 34: hlgsv GDtveVkdGygrNFLLphG laiva RL9_PEA : 62- 80: nvgkk GElldVrvGffrNFLFpsG kaqlv RL9_SYNEN : 20- 38: klgrm GQvveVapGyarNYLFprG iaepa RL9_SYNY3 : 40- 58: klgft GDlveVapGyarNYLIpkG lgvva RL9_THETH : 16- 34: nlgdv GQvvcVkrGtarNYLLpxG r B 2: 26.2912 10( 10) V-x(2)-G-x(3)-N-[FY]-L-[FILV]-x(2)-G Occurences: 10(10) RL9_ARATH : 70- 83: gqlld VkaGffrNFLLptG kaqlm RL9_BACST : 21- 34: geikn VadGyanNFLFkqG laiea RL9_BACSU : 21- 34: gevkn VadGyahNFLIkkG lavea RL9_ECOLI : 21- 34: gdqvn VkaGyarNFLVpqG kavpa RL9_HAEIN : 21- 34: gdqvn VksGfarNFLIpqG kavma RL9_MYCLE : 21- 34: gdtve VkdGygrNFLLphG laiva RL9_PEA : 67- 80: gelld VrvGffrNFLFpsG kaqlv RL9_SYNEN : 25- 38: gqvve VapGyarNYLFprG iaepa RL9_SYNY3 : 45- 58: gdlve VapGyarNYLIpkG lgvva RL9_THETH : 21- 34: gqvvc VkrGtarNYLLpxG r C 3: 22.1212 10( 10) G-x(3)-N-[FY]-L-[FILV]-x(2)-G Occurences: 10(10) RL9_ARATH : 73- 83: ldvka GffrNFLLptG kaqlm RL9_BACST : 24- 34: knvad GyanNFLFkqG laiea RL9_BACSU : 24- 34: knvad GyahNFLIkkG lavea RL9_ECOLI : 24- 34: vnvka GyarNFLVpqG kavpa RL9_HAEIN : 24- 34: vnvks GfarNFLIpqG kavma RL9_MYCLE : 24- 34: vevkd GygrNFLLphG laiva RL9_PEA : 70- 80: ldvrv GffrNFLFpsG kaqlv RL9_SYNEN : 28- 38: vevap GyarNYLFprG iaepa RL9_SYNY3 : 48- 58: vevap GyarNYLIpkG lgvva RL9_THETH : 24- 34: vcvkr GtarNYLLpxG r D 4: 19.1594 11( 10) G-x(2,3)-R-x(0,2)-L-[FILV]-[GP]-x-[GIV] Occurences: 11(10) RL9_ARATH : 73- 83: ldvka Gff-RnfLLPtG kaqlm RL9_BACST : 84- 93: ipaka GeggR--LFGsI tskqi RL9_BACSU : 84- 93: lsaks GeggR--LFGsV tskqi RL9_ECOLI : 24- 34: vnvka Gya-RnfLVPqG kavpa RL9_HAEIN : 24- 34: vnvks Gfa-RnfLIPqG kavma RL9_HAEIN : 85- 94: iaska GdegR--LFGaI ttrdv RL9_MYCLE : 24- 34: vevkd Gyg-RnfLLPhG laiva RL9_PEA : 70- 80: ldvrv Gff-RnfLFPsG kaqlv RL9_SYNEN : 28- 38: vevap Gya-RnyLFPrG iaepa RL9_SYNY3 : 48- 58: vevap Gya-RnyLIPkG lgvva RL9_THETH : 24- 34: vcvkr Gta-RnyLLPxG r E 5: 19.1594 10( 10) G-x(1,2)-R-x(0,2)-L-[FILV]-[GP]-x-[GIV] Occurences: 10(10) RL9_ARATH : 73- 83: ldvka GffRnfLLPtG kaqlm RL9_BACST : 86- 93: akage Gg-R--LFGsI tskqi RL9_BACSU : 86- 93: aksge Gg-R--LFGsV tskqi RL9_ECOLI : 24- 34: vnvka GyaRnfLVPqG kavpa RL9_HAEIN : 24- 34: vnvks GfaRnfLIPqG kavma RL9_MYCLE : 24- 34: vevkd GygRnfLLPhG laiva RL9_PEA : 70- 80: ldvrv GffRnfLFPsG kaqlv RL9_SYNEN : 28- 38: vevap GyaRnyLFPrG iaepa RL9_SYNY3 : 48- 58: vevap GyaRnyLIPkG lgvva RL9_THETH : 24- 34: vcvkr GtaRnyLLPxG r F 6: 17.9511 10( 10) N-[FY]-L-[FILV]-x(2)-G Occurences: 10(10) RL9_ARATH : 77- 83: agffr NFLLptG kaqlm RL9_BACST : 28- 34: dgyan NFLFkqG laiea RL9_BACSU : 28- 34: dgyah NFLIkkG lavea RL9_ECOLI : 28- 34: agyar NFLVpqG kavpa RL9_HAEIN : 28- 34: sgfar NFLIpqG kavma RL9_MYCLE : 28- 34: dgygr NFLLphG laiva RL9_PEA : 74- 80: vgffr NFLFpsG kaqlv RL9_SYNEN : 32- 38: pgyar NYLFprG iaepa RL9_SYNY3 : 52- 58: pgyar NYLIpkG lgvva RL9_THETH : 28- 34: rgtar NYLLpxG r G 7: 17.4090 10( 10) G-x(2)-G-x(2,4)-V-x-[ADV]-x(4)-[AN] Occurences: 10(10) RL9_ARATH : 62- 77: dvtdl GkqGqlldVkAgffrN fllpt RL9_BACST : 13- 28: dvkgk GkkGeiknVaDgyanN flfkq RL9_BACSU : 13- 28: dvkgk GkkGevknVaDgyahN flikk RL9_ECOLI : 13- 26: kvanl GslGdq--VnVkagyA rnflv RL9_ECOLI : 13- 28: kvanl GslGdqvnVkAgyarN flvpq RL9_HAEIN : 13- 26: kivhl GqvGdq--VnVksgfA rnfli RL9_MYCLE : 13- 28: dvdhl GsvGdtveVkDgygrN fllph RL9_PEA : 59- 74: divnv GkkGelldVrVgffrN flfps RL9_SYNEN : 17- 30: tvnkl GrmGqv--VeVapgyA rnylf RL9_SYNY3 : 37- 50: tinkl GftGdl--VeVapgyA rnyli RL9_THETH : 13- 26: plenl GdvGqv--VcVkrgtA rnyll H 8: 15.1352 10( 10) V-x(0,1)-K-x(1,3)-G-x(3)-[ADENQ]-x(3)-[GPTV] Occurences: 10(10) RL9_ARATH : 70- 81: gqlld V-Ka--GffrNfllP tgkaq RL9_BACST : 9- 21: iflkd V-Kgk-GkkgEiknV adgya RL9_BACSU : 9- 21: iflqd V-Kgk-GkkgEvknV adgya RL9_ECOLI : 21- 32: gdqvn V-Ka--GyarNflvP qgkav RL9_HAEIN : 21- 32: gdqvn V-Ks--GfarNfliP qgkav RL9_MYCLE : 21- 32: gdtve V-Kd--GygrNfllP hglai RL9_PEA : 58- 70: edivn VgKk--GellDvrvG ffrnf RL9_SYNEN : 13- 25: vlnet VnKl--GrmgQvveV apgya RL9_SYNY3 : 103- 117: tigrf ViKkqvGeaeAifgT vttqe RL9_THETH : 21- 32: gqvvc V-Kr--GtarNyllP xgr I 9: 15.1352 14( 10) V-x(0,2)-K-x(1,2)-G-x(3)-[ADENQ]-x(3)-[GPTV] Occurences: 14(10) RL9_ARATH : 70- 81: gqlld V--Ka-GffrNfllP tgkaq RL9_BACST : 9- 21: iflkd V--KgkGkkgEiknV adgya RL9_BACSU : 9- 21: iflqd V--KgkGkkgEvknV adgya RL9_ECOLI : 19- 32: slgdq VnvKa-GyarNflvP qgkav RL9_ECOLI : 21- 32: gdqvn V--Ka-GyarNflvP qgkav RL9_HAEIN : 19- 32: qvgdq VnvKs-GfarNfliP qgkav RL9_HAEIN : 21- 32: gdqvn V--Ks-GfarNfliP qgkav RL9_MYCLE : 19- 32: svgdt VevKd-GygrNfllP hglai RL9_MYCLE : 21- 32: gdtve V--Kd-GygrNfllP hglai RL9_PEA : 58- 70: edivn Vg-Kk-GellDvrvG ffrnf RL9_SYNEN : 13- 25: vlnet Vn-Kl-GrmgQvveV apgya RL9_SYNY3 : 103- 117: tigrf VikKqvGeaeAifgT vttqe RL9_THETH : 19- 32: dvgqv VcvKr-GtarNyllP xgr RL9_THETH : 21- 32: gqvvc V--Kr-GtarNyllP xgr J 10: 14.6076 11( 10) N-x(0,1)-L-x(3)-G-x-[ALV] Occurences: 11(10) RL9_ARATH : 77- 85: agffr NfLlptGkA qlmtp RL9_BACST : 28- 36: dgyan NfLfkqGlA ieatp RL9_BACSU : 28- 36: dgyah NfLikkGlA veana RL9_ECOLI : 28- 36: agyar NfLvpqGkA vpatk RL9_HAEIN : 28- 36: sgfar NfLipqGkA vmatk RL9_MYCLE : 28- 36: dgygr NfLlphGlA ivasr RL9_PEA : 74- 82: vgffr NfLfpsGkA qlvtp RL9_SYNEN : 14- 22: lnetv NkLgrmGqV vevap RL9_SYNEN : 32- 40: pgyar NyLfprGiA epatp RL9_SYNY3 : 34- 42: lneti NkLgftGdL vevap RL9_THETH : 11- 18: leple N-LgdvGqV vcvkr K 11: 14.1234 12( 10) L-x(3)-G-x-[ALV]-x(2)-[AV] Occurences: 12(10) RL9_ARATH : 61- 70: edvtd LgkqGqLldV kagff RL9_BACST : 30- 39: yannf LfkqGlAieA tpanl RL9_BACSU : 30- 39: yahnf LikkGlAveA nasni RL9_ECOLI : 30- 39: yarnf LvpqGkAvpA tkkni RL9_HAEIN : 30- 39: farnf LipqGkAvmA tkani RL9_MYCLE : 30- 39: ygrnf LlphGlAivA srgaq RL9_PEA : 76- 85: ffrnf LfpsGkAqlV tpgvl RL9_SYNEN : 16- 25: etvnk LgrmGqVveV apgya RL9_SYNEN : 34- 43: yarny LfprGiAepA tpsal RL9_SYNY3 : 36- 45: etink LgftGdLveV apgya RL9_THETH : 9- 18: illep LenlGdVgqV vcvkr RL9_THETH : 12- 21: eplen LgdvGqVvcV krgta L 12: 13.1076 11( 10) L-x(2,4)-V-x(1,3)-V-x-[ALV] Occurences: 11(10) RL9_ARATH : 117- 126: eeaqq Lam--VfqtVgA fkvkr RL9_BACST : 124- 133: daira LgytnVp--VkL hpevt RL9_BACSU : 124- 133: dgira LgytnVp--VkL hpevq RL9_ECOLI : 15- 23: anlgs Lgdq-Vn--VkA gyarn RL9_HAEIN : 12- 21: dkivh Lgq--VgdqVnV ksgfa RL9_MYCLE : 12- 21: advdh Lgs--VgdtVeV kdgyg RL9_MYCLE : 136- 144: pvsvh Lhpe-Vd--VvV lldvv RL9_MYCLE : 136- 145: pvsvh Lhpe-Vdv-VvL ldvva RL9_MYCLE : 136- 146: pvsvh Lhpe-VdvvVlL dvvaa RL9_PEA : 179- 189: iaelk Lhpd-VtakVrV nvian RL9_SYNEN : 137- 145: taeik Lhpe-Vt--VkL niqvv RL9_SYNY3 : 157- 167: qaqik Lhpe-ViatVeV qvapl RL9_THETH : 12- 21: eplen Lgd--VgqvVcV krgta M 13: 12.8131 11( 10) A-x-[AENS]-x-L-x(3)-[EGQS] Occurences: 11(10) RL9_ARATH : 25- 33: sfngg AnEtLkvsE rrfnf RL9_BACST : 26- 34: vadgy AnNfLfkqG laiea RL9_BACSU : 26- 34: vadgy AhNfLikkG lavea RL9_ECOLI : 26- 34: vkagy ArNfLvpqG kavpa RL9_HAEIN : 26- 34: vksgf ArNfLipqG kavma RL9_HAEIN : 58- 66: eleat AaAnLaaaQ araae RL9_MYCLE : 71- 79: neikv AiEaLgsvS lpmkt RL9_PEA : 2- 10: m AsStLsslS stplq RL9_SYNEN : 30- 38: vapgy ArNyLfprG iaepa RL9_SYNY3 : 50- 58: vapgy ArNyLipkG lgvva RL9_THETH : 26- 34: vkrgt ArNyLlpxG r N 14: 11.5277 15( 10) L-x-P-x-[GV] Occurences: 15(10) RL9_ARATH : 79- 83: ffrnf LlPtG kaqlm RL9_ARATH : 182- 186: iaelk LhPdV tarvk RL9_BACST : 133- 137: nvpvk LhPeV tatlk RL9_BACSU : 133- 137: nvpvk LhPeV qavlk RL9_ECOLI : 30- 34: yarnf LvPqG kavpa RL9_HAEIN : 30- 34: farnf LiPqG kavma RL9_MYCLE : 30- 34: ygrnf LlPhG laiva RL9_MYCLE : 136- 140: pvsvh LhPeV dvvvl RL9_PEA : 76- 80: ffrnf LfPsG kaqlv RL9_PEA : 179- 183: iaelk LhPdV takvr RL9_SYNEN : 34- 38: yarny LfPrG iaepa RL9_SYNEN : 137- 141: taeik LhPeV tvkln RL9_SYNY3 : 54- 58: yarny LiPkG lgvva RL9_SYNY3 : 157- 161: qaqik LhPeV iatve RL9_THETH : 30- 34: tarny LlPxG r O 15: 11.0102 11( 10) V-x(1,2)-K-x(1,3)-G Occurences: 11(10) RL9_ARATH : 129- 134: vgafk VkrKg--G kgkli RL9_ARATH : 129- 136: vgafk VkrKggkG klifg RL9_BACST : 9- 16: iflkd VkgKgkkG eiknv RL9_BACSU : 9- 16: iflqd VkgKgkkG evknv RL9_ECOLI : 19- 24: slgdq VnvKa--G yarnf RL9_HAEIN : 19- 24: qvgdq VnvKs--G farnf RL9_MYCLE : 19- 24: svgdt VevKd--G ygrnf RL9_MYCLE : 19- 26: svgdt VevKdgyG rnfll RL9_PEA : 58- 62: edivn Vg-Kk--G elldv RL9_PEA : 126- 131: fgafk VkrKg--G kgkqi RL9_PEA : 126- 133: fgafk VkrKggkG kqifg RL9_SYNEN : 13- 17: vlnet Vn-Kl--G rmgqv RL9_SYNY3 : 103- 109: tigrf VikKqv-G eaeai RL9_SYNY3 : 103- 109: tigrf Vi-KkqvG eaeai RL9_THETH : 19- 24: dvgqv VcvKr--G tarny P 16: 10.5102 13( 10) K-x(1,3)-G-x(1,3)-A Occurences: 13(10) RL9_ARATH : 137- 145: kggkg KlifGsvtA qdlvd RL9_BACST : 32- 36: nnflf Kq--Gl--A ieatp RL9_BACSU : 32- 36: hnfli Kk--Gl--A veana RL9_ECOLI : 22- 26: dqvnv Ka--Gy--A rnflv RL9_HAEIN : 22- 26: dqvnv Ks--Gf--A rnfli RL9_MYCLE : 90- 97: vadsg Klf-GsvtA gdvva RL9_PEA : 134- 142: kggkg KqifGsvtA qdlvd RL9_SYNEN : 127- 133: lpeir Kl--GtytA eiklh RL9_SYNY3 : 57- 63: nylip Kgl-Gvv-A tpgil RL9_SYNY3 : 105- 111: grfvi KkqvGe--A eaifg RL9_SYNY3 : 105- 113: grfvi KkqvGeaeA ifgtv RL9_SYNY3 : 106- 111: rfvik Kqv-Ge--A eaifg RL9_SYNY3 : 106- 113: rfvik Kqv-GeaeA ifgtv RL9_SYNY3 : 147- 153: lpdih Kt--GfyqA qiklh RL9_THETH : 22- 26: qvvcv Kr--Gt--A rnyll Q 17: 10.5102 15( 10) V-x(3,5)-V-x(0,2)-K Occurences: 15(10) RL9_ARATH : 124- 130: mvfqt Vgafk-V--K rkggk RL9_ARATH : 124- 132: mvfqt Vgafk-VkrK ggkgk RL9_ARATH : 186- 191: klhpd Vtar--V--K invfa RL9_BACST : 3- 10: mk ViflkdV--K gkgkk RL9_BACST : 3- 12: mk ViflkdVkgK gkkge RL9_BACSU : 3- 10: mk ViflqdV--K gkgkk RL9_BACSU : 3- 12: mk ViflqdVkgK gkkge RL9_BACSU : 137- 146: klhpe VqavlkVhvK eea RL9_BACSU : 140- 146: pevqa Vlkvh-V--K eea RL9_ECOLI : 134- 141: evsfq Vhse--VfaK vivnv RL9_HAEIN : 15- 22: vhlgq VgdqvnV--K sgfar RL9_HAEIN : 15- 22: vhlgq Vgdq--VnvK sgfar RL9_HAEIN : 103- 109: dvaea Vtaag-V--K iakse RL9_MYCLE : 15- 22: dhlgs VgdtveV--K dgygr RL9_MYCLE : 15- 22: dhlgs Vgdt--VevK dgygr RL9_PEA : 85- 91: gkaql Vtpg--Vl-K emkie RL9_SYNEN : 7- 15: akrvq VvlnetVn-K lgrmg RL9_SYNEN : 8- 15: krvqv Vlnet-Vn-K lgrmg RL9_SYNY3 : 20- 26: igkit Vmakr-V--K vvlne RL9_THETH : 15- 22: enlgd VgqvvcV--K rgtar RL9_THETH : 15- 22: enlgd Vgqv--VcvK rgtar R 18: 10.5102 17( 10) K-x(0,2)-V-x(1,3)-L Occurences: 17(10) RL9_ARATH : 51- 54: akklr K--Vi--L kedvt RL9_ARATH : 55- 61: rkvil KedVtd-L gkqgq RL9_ARATH : 162- 167: qkdid KrlVs--L peire RL9_BACST : 2- 6: m K--Vif-L kdvkg RL9_BACSU : 2- 6: m K--Vif-L qdvkg RL9_BACSU : 74- 79: ketle KltVe--L saksg RL9_ECOLI : 8- 12: villd K--Van-L gslgd RL9_ECOLI : 112- 117: gveva KseVr--L pngvl RL9_HAEIN : 8- 12: villd Ki-Vh--L gqvgd RL9_HAEIN : 112- 117: gvkia KseVr--L pngpi RL9_MYCLE : 114- 119: gpnld KriVr--L pkthi RL9_PEA : 159- 164: qrevd KriVn--L peire RL9_SYNEN : 3- 9: ma Kr-VqvvL netvn RL9_SYNY3 : 23- 29: itvma Kr-VkvvL netin RL9_SYNY3 : 26- 29: makrv K--Vv--L netin RL9_SYNY3 : 93- 96: aaear K--Va--L etigr RL9_THETH : 2- 5: t K--Vi--L leple RL9_THETH : 2- 6: t K--Vil-L eplen S 19: 8.3401 18( 10) R-x(3)-L Occurences: 18(10) RL9_ARATH : 50- 54: kakkl RkviL kedvt RL9_ARATH : 76- 80: kagff RnflL ptgka RL9_ARATH : 163- 167: kdidk RlvsL peire RL9_BACST : 113- 117: lkldk RkieL adair RL9_BACSU : 113- 117: ikvdk RkleL pdgir RL9_ECOLI : 50- 54: effea RraeL eakla RL9_HAEIN : 50- 54: ehfea RraeL eataa RL9_MYCLE : 27- 31: kdgyg RnflL phgla RL9_MYCLE : 115- 119: pnldk RivrL pkthi RL9_PEA : 47- 51: ktkkt RkiiL kediv RL9_PEA : 160- 164: revdk RivnL peire RL9_SYNEN : 50- 54: psalr RverL qeker RL9_SYNEN : 61- 65: ekerq RlaaL ksiae RL9_SYNEN : 118- 122: etidr RemiL peirk RL9_SYNY3 : 75- 79: qveqr RlkeL erlka RL9_SYNY3 : 92- 96: daaea RkvaL etigr RL9_SYNY3 : 138- 142: qsldr RgisL pdihk RL9_THETH : 27- 31: krgta RnylL pxgr T 20: 8.3401 19( 10) A-x(3)-L Occurences: 19(10) RL9_ARATH : 25- 29: sfngg AnetL kvser RL9_ARATH : 178- 182: tgeyi AelkL hpdvt RL9_BACST : 26- 30: vadgy AnnfL fkqgl RL9_BACST : 58- 62: keqrq AaeeL anakk RL9_BACST : 104- 108: aeslq AqhgL kldkr RL9_BACST : 120- 124: ielad AiraL gytnv RL9_BACSU : 26- 30: vadgy AhnfL ikkgl RL9_BACSU : 58- 62: kekke AiaeL eqaks RL9_ECOLI : 26- 30: vkagy ArnfL vpqgk RL9_HAEIN : 26- 30: vksgf ArnfL ipqgk RL9_HAEIN : 58- 62: eleat AaanL aaaqa RL9_MYCLE : 71- 75: neikv AieaL gsvsl RL9_PEA : 2- 6: m AsstL sslss RL9_PEA : 175- 179: tgeyi AelkL hpdvt RL9_SYNEN : 30- 34: vapgy ArnyL fprgi RL9_SYNEN : 133- 137: lgtyt AeikL hpevt RL9_SYNY3 : 50- 54: vapgy ArnyL ipkgl RL9_SYNY3 : 153- 157: tgfyq AqikL hpevi RL9_THETH : 26- 30: vkrgt ArnyL lpxgr Number of patterns evaluated by Pratt:268 Total running time: 1 seconds