------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file RIBOSOMAL_L7AE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L7AE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NHP2_YEAST 173 RL4A_YEAST 255 RL4B_YEAST 255 RL7A_CHICK 265 RL7A_DROME 271 RL7A_HUMAN 265 RL7A_MOUSE 265 RL7A_ORYSA 258 RS6_HALMA 116 YEC6_YEAST 126 YLXQ_BACSU 100 Pratt run started at Thu Feb 6 21:06:04 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 12( 11) G-x(5)-K-x(2,3)-R 2: 12.0102 13( 11) A-x(2,3)-A-x-K 3: 11.5102 14( 11) G-x(4,5)-K-x(2,3)-R 4: 11.5102 13( 11) K-x(1,2)-P-x(2,3)-V 5: 11.5102 26( 11) A-x(0,1)-K-x(0,1)-K 6: 11.5102 12( 11) V-x(2,3)-G-x(3,4)-V 7: 11.5102 17( 11) K-x(1,3)-G-x(5)-K 8: 11.5102 16( 11) L-x(2,3)-A-x(2,3)-A 9: 11.0102 23( 11) A-x(1,2)-K-x(3,5)-L 10: 11.0102 13( 11) D-x(2,3)-A-x(1,3)-K 11: 11.0102 23( 11) A-x(1,2)-V-x(3,5)-V 12: 11.0102 11( 11) A-x(0,1)-L-x(0,2)-G 13: 11.0102 23( 11) V-x(1,3)-A-x(0,1)-L 14: 11.0102 16( 11) V-x(4,5)-V-x(0,2)-L 15: 11.0102 30( 11) V-x(0,2)-K-x(0,1)-K 16: 11.0102 13( 11) K-x(0,1)-K-x(1,3)-T 17: 11.0102 17( 11) L-x(4,5)-E-x(0,2)-A 18: 11.0102 24( 11) A-x(0,1)-K-x(1,3)-L 19: 11.0102 27( 11) A-x(1,2)-L-x(2,4)-L 20: 11.0102 19( 11) A-x(0,2)-R-x(3,4)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 30.3748 11( 11) K-x(1,3)-G-x(5)-K-[AEST]-x(3)-[AGLV]-x(4)-[IV]-x(2)-[AENT]-[ADEG]-[DEK]-x-[AENQS]-x(3)-[AILV] B 2: 17.0236 11( 11) A-x(0,2)-R-x(3,4)-V-x(3)-[GPTV]-x-[AEGST]-[ACNTV] C 3: 12.0102 12( 11) G-x(5)-K-x(2,3)-R D 4: 12.0102 13( 11) A-x(2,3)-A-x-K E 5: 11.5102 14( 11) G-x(4,5)-K-x(2,3)-R F 6: 11.5102 13( 11) K-x(1,2)-P-x(2,3)-V G 7: 11.5102 26( 11) A-x(0,1)-K-x(0,1)-K H 8: 11.5102 12( 11) V-x(2,3)-G-x(3,4)-V I 9: 11.5102 16( 11) L-x(2,3)-A-x(2,3)-A J 10: 11.0102 23( 11) A-x(1,2)-K-x(3,5)-L K 11: 11.0102 13( 11) D-x(2,3)-A-x(1,3)-K L 12: 11.0102 23( 11) A-x(1,2)-V-x(3,5)-V M 13: 11.0102 11( 11) A-x(0,1)-L-x(0,2)-G N 14: 11.0102 23( 11) V-x(1,3)-A-x(0,1)-L O 15: 11.0102 16( 11) V-x(4,5)-V-x(0,2)-L P 16: 11.0102 30( 11) V-x(0,2)-K-x(0,1)-K Q 17: 11.0102 13( 11) K-x(0,1)-K-x(1,3)-T R 18: 11.0102 17( 11) L-x(4,5)-E-x(0,2)-A S 19: 11.0102 24( 11) A-x(0,1)-K-x(1,3)-L T 20: 11.0102 27( 11) A-x(1,2)-L-x(2,4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 30.3748 11( 11) K-x(1,3)-G-x(5)-K-[AEST]-x(3)-[AGLV]-x(4)-[IV]-x(2)-[AENT]-[ADEG]-[DEK]-x-[AENQS]-x(3)-[AILV] Occurences: 11(11) NHP2_YEAST : 74- 103: kaknv Kr--GvkevvKAlrkGekglVviAGDiSpadV iship RL4A_YEAST : 182- 213: aivkg KarlGtlvnqKTsavAalteVraEDEaAlakL vstid RL4B_YEAST : 182- 213: aiikg KarlGtlvnqKTsavAalteVraEDEaAlakL vstid RL7A_CHICK : 186- 217: ciiks KarlGrlvhrKTctcVaftqVnpEDKgAlakL veavk RL7A_DROME : 192- 223: civkg KarlGrlvrrKTcttLalttVdnNDKaNfgkV leavk RL7A_HUMAN : 186- 217: ciikg KarlGrlvhrKTcttVaftqVnsEDKgAlakL veair RL7A_MOUSE : 186- 217: ciikg KarlGhlvhrKTcttVaftqVnsEDKgAlakL veair RL7A_ORYSA : 179- 210: civkg KarlGsivhkKTasvLclttVknEDKlEfskI leaik RS6_HALMA : 30- 59: dtgav Kk--GtnettKSierGsaelVfvAEDvQpeeI vmhip YEC6_YEAST : 34- 63: nlrql Kk--GaneatKTlnrGisefIimAADcEpieI llhlp YLXQ_BACSU : 18- 49: anrar KvvsGedlviKEirnAraklVllTEDaSsntA kkvtd B 2: 17.0236 11( 11) A-x(0,2)-R-x(3,4)-V-x(3)-[GPTV]-x-[AEGST]-[ACNTV] Occurences: 11(11) NHP2_YEAST : 132- 147: lgaag AtkRptsvVfivPgSN kkkdg RL4A_YEAST : 183- 196: ivkgk A--RlgtlVnqkTsAV aalte RL4B_YEAST : 183- 196: iikgk A--RlgtlVnqkTsAV aalte RL7A_CHICK : 187- 200: iiksk A--RlgrlVhrkTcTC vaftq RL7A_DROME : 193- 206: ivkgk A--RlgrlVrrkTcTT laltt RL7A_HUMAN : 187- 200: iikgk A--RlgrlVhrkTcTT vaftq RL7A_MOUSE : 187- 200: iikgk A--RlghlVhrkTcTT vaftq RL7A_ORYSA : 180- 193: ivkgk A--RlgsiVhkkTaSV lcltt RS6_HALMA : 23- 36: ealev A--RdtgaVkkgTnET tksie YEC6_YEAST : 86- 100: vpsrv AlgRacg-VsrpViAA sittn YLXQ_BACSU : 80- 93: sigke A--RvvvaVtdqGfAN klisl C 3: 12.0102 12( 11) G-x(5)-K-x(2,3)-R Occurences: 12(11) NHP2_YEAST : 76- 85: knvkr GvkevvKal-R kgekg RL4A_YEAST : 238- 248: gggil GnkaqaKmdkR aknsd RL4B_YEAST : 238- 248: gggil GnkaqaKmdkR aktsd RL7A_CHICK : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_DROME : 244- 254: rrhwg GgilgsKslaR iskle RL7A_HUMAN : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_MOUSE : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_ORYSA : 36- 46: qfgig GalppkKdlhR fvkwp RL7A_ORYSA : 235- 245: gggvm GsksqaKtkaR eklla RS6_HALMA : 32- 42: gavkk GtnettKsieR gsael YEC6_YEAST : 36- 46: rqlkk GaneatKtlnR gisef YLXQ_BACSU : 22- 31: rkvvs GedlviKei-R narak D 4: 12.0102 13( 11) A-x(2,3)-A-x-K Occurences: 13(11) NHP2_YEAST : 48- 54: avlpf AkplAsK klnkk NHP2_YEAST : 129- 134: kqdlg Aag-AtK rptsv RL4A_YEAST : 219- 224: vstid Anf-AdK ydevk RL4B_YEAST : 219- 224: vstid Anf-AdK ydevk RL7A_CHICK : 257- 263: lekak AkelAtK lg RL7A_DROME : 20- 25: kkvap Apl-AvK kpvvk RL7A_DROME : 263- 269: lerak ArelAqK qg RL7A_HUMAN : 257- 263: lekak AkelAtK lg RL7A_MOUSE : 257- 263: lekak AkelAtK lg RL7A_ORYSA : 9- 15: krggr ApvpAkK ktekv RS6_HALMA : 105- 111: dagaa AtviAdK veelr YEC6_YEAST : 37- 42: qlkkg Ane-AtK tlnrg YLXQ_BACSU : 13- 18: pllgl Anr-ArK vvsge E 5: 11.5102 14( 11) G-x(4,5)-K-x(2,3)-R Occurences: 14(11) NHP2_YEAST : 76- 85: knvkr GvkevvKal-R kgekg RL4A_YEAST : 238- 248: gggil GnkaqaKmdkR aknsd RL4B_YEAST : 238- 248: gggil GnkaqaKmdkR aktsd RL7A_CHICK : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_DROME : 244- 254: rrhwg GgilgsKslaR iskle RL7A_DROME : 245- 254: rhwgg Gilgs-KslaR iskle RL7A_HUMAN : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_MOUSE : 238- 248: rrhwg GnvlgpKsvaR iakle RL7A_ORYSA : 36- 46: qfgig GalppkKdlhR fvkwp RL7A_ORYSA : 235- 245: gggvm GsksqaKtkaR eklla RS6_HALMA : 32- 42: gavkk GtnettKsieR gsael YEC6_YEAST : 36- 46: rqlkk GaneatKtlnR gisef YLXQ_BACSU : 22- 31: rkvvs GedlviKei-R narak YLXQ_BACSU : 73- 81: sravl Grsig-Kea-R vvvav F 6: 11.5102 13( 11) K-x(1,2)-P-x(2,3)-V Occurences: 13(11) NHP2_YEAST : 134- 139: aagat Kr-Pts-V vfivp NHP2_YEAST : 134- 140: aagat Kr-PtsvV fivpg RL4A_YEAST : 50- 55: lsryv Kw-Pey-V rvqrq RL4B_YEAST : 50- 55: lsryv Kw-Pey-V rlqrq RL7A_CHICK : 10- 17: kakgk KvaPapaV vkkqe RL7A_DROME : 135- 141: kdvep KkkPsy-V sagtn RL7A_DROME : 136- 141: dvepk Kk-Psy-V sagtn RL7A_HUMAN : 10- 17: kakgk KvaPapaV vkkqe RL7A_MOUSE : 10- 17: kakgk KvaPapaV vkkqe RL7A_ORYSA : 49- 54: lhrfv Kw-Pkv-V riqrq RL7A_ORYSA : 123- 128: ktvea Kk-Piv-V kygln RS6_HALMA : 70- 77: elade KgvPfifV eqqdd YEC6_YEAST : 74- 81: llced KnvPyvfV psrva YLXQ_BACSU : 60- 66: kcnyy Kv-PykkV esrav G 7: 11.5102 26( 11) A-x(0,1)-K-x(0,1)-K Occurences: 26(11) NHP2_YEAST : 52- 55: fakpl AsK-K lnkkv NHP2_YEAST : 67- 71: ktvkk AsKaK nvkrg RL4A_YEAST : 102- 105: rpeta AeK-K erltk RL4B_YEAST : 102- 105: rpeta AeK-K erltk RL7A_CHICK : 6- 9: pkgkk A-KgK kvapa RL7A_CHICK : 23- 25: vkkqe A-K-K vvnpl RL7A_CHICK : 255- 258: aklek A-KaK elatk RL7A_DROME : 23- 26: apapl AvK-K pvvkk RL7A_DROME : 125- 128: kkiae A-KaK gkdve RL7A_DROME : 127- 130: iaeak A-KgK dvepk RL7A_HUMAN : 6- 9: pkgkk A-KgK kvapa RL7A_HUMAN : 23- 25: vkkqe A-K-K vvnpl RL7A_HUMAN : 117- 120: rllar AeK-K aagkg RL7A_HUMAN : 255- 258: aklek A-KaK elatk RL7A_MOUSE : 6- 9: pkgkk A-KgK kvapa RL7A_MOUSE : 23- 25: vkkqe A-K-K vvnpl RL7A_MOUSE : 117- 120: rllar AeK-K aagkg RL7A_MOUSE : 255- 258: aklek A-KaK elatk RL7A_ORYSA : 13- 15: rapvp A-K-K ktekv RL7A_ORYSA : 13- 16: rapvp AkK-K tekvt RL7A_ORYSA : 13- 16: rapvp A-KkK tekvt RL7A_ORYSA : 101- 104: rpedk AaK-K erllk RL7A_ORYSA : 102- 104: pedka A-K-K erllk RL7A_ORYSA : 122- 124: gktve A-K-K pivvk RL7A_ORYSA : 240- 243: gsksq A-KtK arekl RS6_HALMA : 28- 31: ardtg AvK-K gtnet YEC6_YEAST : 116- 120: ktqiy AvKdK ietll YLXQ_BACSU : 49- 51: assnt A-K-K vtdkc H 8: 11.5102 12( 11) V-x(2,3)-G-x(3,4)-V Occurences: 12(11) NHP2_YEAST : 73- 80: skakn Vkr-Gvke-V vkalr NHP2_YEAST : 73- 81: skakn Vkr-GvkevV kalrk RL4A_YEAST : 131- 138: pkpya Vky-Glnh-V valie RL4A_YEAST : 131- 139: pkpya Vky-GlnhvV alien RL4B_YEAST : 131- 138: pkpya Vky-Glnh-V vslie RL4B_YEAST : 131- 139: pkpya Vky-GlnhvV slien RL7A_CHICK : 134- 142: tkrpp VlraGvnt-V ttlve RL7A_DROME : 141- 148: kkpsy Vsa-Gtnt-V tklie RL7A_HUMAN : 134- 142: tkrpp VlraGvnt-V ttlve RL7A_MOUSE : 134- 142: tkrpp VlraGvnt-V ttlve RL7A_ORYSA : 127- 135: akkpi VvkyGlnh-V tylie RL7A_ORYSA : 128- 135: kkpiv Vky-Glnh-V tylie RS6_HALMA : 98- 107: saaaa VtdaGaaatV iadkv YEC6_YEAST : 85- 93: fvpsr Val-GracgV srpvi YLXQ_BACSU : 19- 26: nrark Vvs-Gedl-V ikeir I 9: 11.5102 16( 11) L-x(2,3)-A-x(2,3)-A Occurences: 16(11) NHP2_YEAST : 45- 52: rmpav Lpf-AkplA skkln RL4A_YEAST : 108- 116: ekker LtkeAaavA egksk RL4B_YEAST : 108- 116: ekker LtkeAaaiA egksk RL7A_CHICK : 113- 121: ekkqr LlarAeqkA agkgd RL7A_CHICK : 114- 121: kkqrl Lar-AeqkA agkgd RL7A_DROME : 119- 127: aknvr LkkiAeakA kgkdv RL7A_HUMAN : 113- 121: ekkqr LlarAekkA agkgd RL7A_HUMAN : 114- 121: kkqrl Lar-AekkA agkgd RL7A_MOUSE : 113- 121: ekkqr LlarAekkA agkgd RL7A_MOUSE : 114- 121: kkqrl Lar-AekkA agkgd RL7A_ORYSA : 107- 115: akker LlkrAqaeA egktv RL7A_ORYSA : 108- 115: kkerl Lkr-AqaeA egktv RS6_HALMA : 12- 19: dvpad LeddAle-A levar YEC6_YEAST : 33- 40: anlrq LkkgAne-A tktln YLXQ_BACSU : 9- 16: mewfp LlglAnr-A rkvvs YLXQ_BACSU : 10- 16: ewfpl Lgl-Anr-A rkvvs J 10: 11.0102 23( 11) A-x(1,2)-K-x(3,5)-L Occurences: 23(11) NHP2_YEAST : 52- 61: fakpl AskKlnkkvL ktvkk NHP2_YEAST : 83- 91: kevvk AlrKgekg-L vviag RL4A_YEAST : 101- 108: yrpet AaeKker--L tkeaa RL4A_YEAST : 102- 108: rpeta Ae-Kker--L tkeaa RL4A_YEAST : 177- 185: mgvpy AivKgkar-L gtlvn RL4B_YEAST : 101- 108: yrpet AaeKker--L tkeaa RL4B_YEAST : 102- 108: rpeta Ae-Kker--L tkeaa RL4B_YEAST : 177- 185: mgvpy AiiKgkar-L gtlvn RL7A_CHICK : 23- 30: vkkqe Ak-Kvvnp-L fekrp RL7A_CHICK : 255- 264: aklek AkaKelatkL g RL7A_DROME : 97- 103: ldktt Av-Klfk--L lekyr RL7A_DROME : 97- 104: ldktt Av-Klfkl-L ekyrp RL7A_DROME : 112- 119: yrpes AlaKnvr--L kkiae RL7A_HUMAN : 23- 30: vkkqe Ak-Kvvnp-L fekrp RL7A_HUMAN : 255- 264: aklek AkaKelatkL g RL7A_MOUSE : 23- 30: vkkqe Ak-Kvvnp-L fekrp RL7A_MOUSE : 255- 264: aklek AkaKelatkL g RL7A_ORYSA : 101- 107: rpedk Aa-Kker--L lkraq RL7A_ORYSA : 101- 108: rpedk AakKerl--L kraqa RL7A_ORYSA : 101- 108: rpedk Aa-Kkerl-L kraqa RL7A_ORYSA : 102- 108: pedka Ak-Kerl--L kraqa RL7A_ORYSA : 240- 248: gsksq AktKarek-L lakea RL7A_ORYSA : 240- 249: gsksq AktKareklL akeaa RS6_HALMA : 109- 115: aatvi Ad-Kvee--L r YEC6_YEAST : 116- 124: ktqiy Av-KdkietL li YLXQ_BACSU : 33- 40: keirn AraKlvl--L tedas YLXQ_BACSU : 92- 98: tdqgf An-Klis--L ld YLXQ_BACSU : 92- 99: tdqgf An-Klisl-L d K 11: 11.0102 13( 11) D-x(2,3)-A-x(1,3)-K Occurences: 13(11) NHP2_YEAST : 126- 134: ipskq DlgaAgatK rptsv RL4A_YEAST : 206- 212: evrae Dea-Ala-K lvsti RL4A_YEAST : 218- 224: lvsti DanfAd--K ydevk RL4B_YEAST : 206- 212: evrae Dea-Ala-K lvsti RL4B_YEAST : 218- 224: lvsti DanfAd--K ydevk RL7A_CHICK : 210- 216: qvnpe Dkg-Ala-K lveav RL7A_DROME : 93- 99: fsqtl DkttAv--K lfkll RL7A_HUMAN : 210- 216: qvnse Dkg-Ala-K lveai RL7A_MOUSE : 210- 216: qvnse Dkg-Ala-K lveai RL7A_ORYSA : 99- 104: kyrpe Dka-Ak--K erllk RS6_HALMA : 25- 30: levar Dtg-Av--K kgtne RS6_HALMA : 25- 31: levar Dtg-Avk-K gtnet YEC6_YEAST : 106- 111: sittn Das-Ai--K tqiya YLXQ_BACSU : 88- 94: vvavt DqgfAn--K lisll L 12: 11.0102 23( 11) A-x(1,2)-V-x(3,5)-V Occurences: 23(11) NHP2_YEAST : 70- 77: kkask AknVkrg--V kevvk NHP2_YEAST : 101- 109: gdisp Ad-VishipV lcedh RL4A_YEAST : 147- 156: ienkk AklVliandV dpiel RL4A_YEAST : 153- 162: klvli AndVdpielV vflpa RL4B_YEAST : 147- 156: ienkk AklVliandV dpiel RL4B_YEAST : 153- 162: klvli AndVdpielV vflpa RL7A_CHICK : 151- 160: venkk AqlVviahdV dpiel RL7A_CHICK : 157- 166: qlvvi AhdVdpielV vflpa RL7A_DROME : 157- 166: ieqkk AqlVviahdV dplel RL7A_DROME : 163- 172: qlvvi AhdVdplelV lflpa RL7A_HUMAN : 151- 160: venkk AqlVviahdV dpiel RL7A_HUMAN : 157- 166: qlvvi AhdVdpielV vflpa RL7A_MOUSE : 151- 160: venkk AqlVviahdV dpiel RL7A_MOUSE : 157- 166: qlvvi AhdVdpielV vflpa RL7A_ORYSA : 144- 153: ieqsk AqlVviahdV dpiel RL7A_ORYSA : 150- 159: qlvvi AhdVdpielV vwlpa RL7A_ORYSA : 191- 199: vhkkt As-VlclttV knedk RS6_HALMA : 45- 54: iergs AelVfvaedV qpeei RS6_HALMA : 51- 60: elvfv AedVqpeeiV mhipe RS6_HALMA : 104- 112: tdaga AatViadk-V eelr RS6_HALMA : 105- 112: dagaa At-Viadk-V eelr YEC6_YEAST : 90- 97: valgr AcgVsrp--V iaasi YLXQ_BACSU : 80- 86: sigke Ar-Vvva--V tdqgf M 13: 11.0102 11( 11) A-x(0,1)-L-x(0,2)-G Occurences: 11(11) NHP2_YEAST : 83- 87: kevvk A-LrkG ekglv RL4A_YEAST : 183- 186: ivkgk ArL--G tlvnq RL4B_YEAST : 183- 186: iikgk ArL--G tlvnq RL7A_CHICK : 187- 190: iiksk ArL--G rlvhr RL7A_DROME : 193- 196: ivkgk ArL--G rlvrr RL7A_HUMAN : 187- 190: iikgk ArL--G rlvhr RL7A_MOUSE : 187- 190: iikgk ArL--G hlvhr RL7A_ORYSA : 180- 183: ivkgk ArL--G sivhk RS6_HALMA : 87- 92: dlgha AgLevG saaaa YEC6_YEAST : 86- 88: vpsrv A-L--G racgv YLXQ_BACSU : 70- 73: kvesr AvL--G rsigk N 14: 11.0102 23( 11) V-x(1,3)-A-x(0,1)-L Occurences: 23(11) NHP2_YEAST : 80- 84: rgvke Vvk-A-L rkgek NHP2_YEAST : 81- 84: gvkev Vk--A-L rkgek NHP2_YEAST : 170- 173: evvke Vq--A-L RL4A_YEAST : 138- 141: yglnh Vv--A-L ienkk RL4A_YEAST : 163- 168: pielv VflpA-L ckkmg RL4A_YEAST : 179- 185: vpyai VkgkArL gtlvn RL4A_YEAST : 196- 199: qktsa Va--A-L tevra RL4B_YEAST : 163- 168: pielv VflpA-L ckkmg RL4B_YEAST : 196- 199: qktsa Va--A-L tevra RL7A_CHICK : 167- 172: pielv VflpA-L crkmg RL7A_CHICK : 246- 252: lgpks VariAkL ekaka RL7A_DROME : 17- 22: pvtkk Vap-ApL avkkp RL7A_DROME : 189- 195: vpyci VkgkArL grlvr RL7A_HUMAN : 167- 172: pielv VflpA-L crkmg RL7A_HUMAN : 246- 252: lgpks VariAkL ekaka RL7A_MOUSE : 167- 172: pielv VflpA-L crkmg RL7A_MOUSE : 246- 252: lgpks VariAkL ekaka RL7A_ORYSA : 69- 73: kqrlk Vpp-A-L nqftr RL7A_ORYSA : 160- 165: pielv VwlpA-L crkme RL7A_ORYSA : 176- 182: vpyci VkgkArL gsivh RS6_HALMA : 8- 12: yvdfd Vp--AdL eddal YEC6_YEAST : 24- 30: qildv VqqaAnL rqlkk YLXQ_BACSU : 66- 72: vpykk VesrAvL grsig O 15: 11.0102 16( 11) V-x(4,5)-V-x(0,2)-L Occurences: 16(11) NHP2_YEAST : 103- 110: ispad VishipV--L cedhs RL4A_YEAST : 156- 165: liand VdpielVvfL palck RL4B_YEAST : 49- 57: nlsry VkwpeyVr-L qrqkk RL4B_YEAST : 156- 165: liand VdpielVvfL palck RL7A_CHICK : 160- 169: viahd VdpielVvfL palcr RL7A_DROME : 28- 36: avkkp Vvkkv-VnqL fekrp RL7A_DROME : 68- 75: pkyir VqrqkaV--L qkrlk RL7A_DROME : 160- 169: kkaql VviahdVdpL elvlf RL7A_DROME : 161- 169: kaqlv Viahd-VdpL elvlf RL7A_DROME : 166- 173: viahd VdplelV--L flpal RL7A_DROME : 166- 175: viahd VdplelVlfL palcr RL7A_HUMAN : 160- 169: viahd VdpielVvfL palcr RL7A_MOUSE : 160- 169: viahd VdpielVvfL palcr RL7A_ORYSA : 153- 162: viahd VdpielVvwL palcr RS6_HALMA : 107- 115: gaaat Viadk-VeeL r YEC6_YEAST : 79- 87: knvpy VfvpsrVa-L gracg YLXQ_BACSU : 66- 72: vpykk Vesra-V--L grsig P 16: 11.0102 30( 11) V-x(0,2)-K-x(0,1)-K Occurences: 30(11) NHP2_YEAST : 64- 66: kvlkt V--K-K askak RL4A_YEAST : 179- 182: vpyai V--KgK arlgt RL4A_YEAST : 228- 230: dkyde V--K-K hwggg RL4B_YEAST : 228- 230: dkyde V--K-K hwggg RL7A_CHICK : 17- 20: apapa Vv-K-K qeakk RL7A_CHICK : 18- 20: papav V--K-K qeakk RL7A_CHICK : 146- 150: tvttl VenK-K aqlvv RL7A_DROME : 2- 5: m Vv-K-K prpkk RL7A_DROME : 3- 5: mv V--K-K prpkk RL7A_DROME : 13- 16: pkkkp Vt-K-K vapap RL7A_DROME : 24- 26: papla V--K-K pvvkk RL7A_DROME : 28- 31: avkkp Vv-K-K vvnql RL7A_DROME : 29- 31: vkkpv V--K-K vvnql RL7A_DROME : 117- 121: alakn VrlK-K iaeak RL7A_DROME : 132- 136: akgkd VepK-K kpsyv RL7A_DROME : 132- 137: akgkd VepKkK psyvs RL7A_DROME : 189- 192: vpyci V--KgK arlgr RL7A_HUMAN : 17- 20: apapa Vv-K-K qeakk RL7A_HUMAN : 18- 20: papav V--K-K qeakk RL7A_HUMAN : 146- 150: tvttl VenK-K aqlvv RL7A_MOUSE : 17- 20: apapa Vv-K-K qeakk RL7A_MOUSE : 18- 20: papav V--K-K qeakk RL7A_MOUSE : 146- 150: tvttl VenK-K aqlvv RL7A_ORYSA : 11- 15: ggrap VpaK-K ktekv RL7A_ORYSA : 11- 16: ggrap VpaKkK tekvt RL7A_ORYSA : 120- 124: aegkt VeaK-K pivvk RL7A_ORYSA : 176- 179: vpyci V--KgK arlgs RL7A_ORYSA : 186- 189: rlgsi Vh-K-K tasvl RL7A_ORYSA : 225- 228: dkfde Vr-K-K wgggv RS6_HALMA : 29- 31: rdtga V--K-K gtnet YEC6_YEAST : 117- 120: tqiya V--KdK ietll YLXQ_BACSU : 61- 65: cnyyk VpyK-K vesra Q 17: 11.0102 13( 11) K-x(0,1)-K-x(1,3)-T Occurences: 13(11) NHP2_YEAST : 58- 63: skkln K-KvlkT vkkas RL4A_YEAST : 104- 109: etaae K-KerlT keaaa RL4B_YEAST : 20- 26: stksn KaKnplT hstpk RL4B_YEAST : 104- 109: etaae K-KerlT keaaa RL7A_CHICK : 256- 262: kleka KaKelaT klg RL7A_DROME : 9- 14: kkprp KkKpv-T kkvap RL7A_DROME : 9- 14: kkprp K-KkpvT kkvap RL7A_DROME : 10- 14: kprpk K-Kpv-T kkvap RL7A_HUMAN : 256- 262: kleka KaKelaT klg RL7A_MOUSE : 256- 262: kleka KaKelaT klg RL7A_ORYSA : 14- 17: apvpa K-Kk--T ekvtn RS6_HALMA : 30- 33: dtgav K-Kg--T nettk YEC6_YEAST : 118- 123: qiyav KdKie-T lli YLXQ_BACSU : 50- 53: ssnta K-Kv--T dkcny R 18: 11.0102 17( 11) L-x(4,5)-E-x(0,2)-A Occurences: 17(11) NHP2_YEAST : 6- 15: mvngs LgsretEtsA vkmgk RL4A_YEAST : 199- 208: savaa LtevraEdeA alakl RL4B_YEAST : 199- 208: savaa LtevraEdeA alakl RL7A_CHICK : 113- 121: ekkqr Llara-EqkA agkgd RL7A_CHICK : 214- 220: edkga Laklv-E--A vktny RL7A_DROME : 104- 112: klfkl LekyrpEs-A laknv RL7A_DROME : 119- 125: aknvr Lkkia-E--A kakgk RL7A_DROME : 119- 127: aknvr Lkkia-EakA kgkdv RL7A_HUMAN : 113- 121: ekkqr Llara-EkkA agkgd RL7A_HUMAN : 214- 220: edkga Laklv-E--A irtny RL7A_MOUSE : 113- 121: ekkqr Llara-EkkA agkgd RL7A_MOUSE : 214- 220: edkga Laklv-E--A irtny RL7A_ORYSA : 92- 101: nlfkm LlkyrpEdkA akker RL7A_ORYSA : 93- 101: lfkml Lkyrp-EdkA akker RL7A_ORYSA : 108- 115: kkerl LkraqaE--A egktv RS6_HALMA : 12- 19: dvpad LeddalE--A levar YEC6_YEAST : 33- 40: anlrq LkkganE--A tktln YLXQ_BACSU : 37- 44: narak Lvllt-Ed-A ssnta S 19: 11.0102 24( 11) A-x(0,1)-K-x(1,3)-L Occurences: 24(11) NHP2_YEAST : 48- 51: avlpf A-Kp--L askkl NHP2_YEAST : 52- 56: fakpl AsKk--L nkkvl RL4A_YEAST : 102- 108: rpeta AeKkerL tkeaa RL4A_YEAST : 130- 135: spkpy AvKyg-L nhvva RL4A_YEAST : 147- 151: ienkk A-Klv-L iandv RL4B_YEAST : 21- 25: tksnk A-Knp-L thstp RL4B_YEAST : 102- 108: rpeta AeKkerL tkeaa RL4B_YEAST : 130- 135: spkpy AvKyg-L nhvvs RL4B_YEAST : 147- 151: ienkk A-Klv-L iandv RL7A_CHICK : 255- 260: aklek A-KakeL atklg RL7A_CHICK : 257- 260: lekak A-Ke--L atklg RL7A_DROME : 97- 103: ldktt AvKlfkL lekyr RL7A_DROME : 114- 119: pesal A-KnvrL kkiae RL7A_DROME : 261- 266: skler A-KareL aqkqg RL7A_HUMAN : 255- 260: aklek A-KakeL atklg RL7A_HUMAN : 257- 260: lekak A-Ke--L atklg RL7A_MOUSE : 255- 260: aklek A-KakeL atklg RL7A_MOUSE : 257- 260: lekak A-Ke--L atklg RL7A_ORYSA : 101- 107: rpedk AaKkerL lkraq RL7A_ORYSA : 102- 107: pedka AkKer-L lkraq RL7A_ORYSA : 102- 107: pedka A-KkerL lkraq RL7A_ORYSA : 102- 108: pedka AkKerlL kraqa RS6_HALMA : 109- 115: aatvi AdKveeL r YEC6_YEAST : 40- 44: kgane AtKt--L nrgis YLXQ_BACSU : 35- 39: irnar A-Klv-L lteda YLXQ_BACSU : 35- 40: irnar A-KlvlL tedas YLXQ_BACSU : 92- 98: tdqgf AnKlisL ld T 20: 11.0102 27( 11) A-x(1,2)-L-x(2,4)-L Occurences: 27(11) NHP2_YEAST : 48- 56: avlpf AkpLaskkL nkkvl RL4A_YEAST : 183- 188: ivkgk Ar-Lgt--L vnqkt RL4A_YEAST : 208- 213: raede Aa-Lak--L vstid RL4B_YEAST : 183- 188: iikgk Ar-Lgt--L vnqkt RL4B_YEAST : 208- 213: raede Aa-Lak--L vstid RL7A_CHICK : 91- 97: ldrqt AtqLlk--L ahkyr RL7A_CHICK : 187- 192: iiksk Ar-Lgr--L vhrkt RL7A_CHICK : 257- 264: lekak AkeLatk-L g RL7A_DROME : 73- 79: vqrqk Av-Lqkr-L kvppp RL7A_DROME : 97- 103: ldktt AvkLfk--L lekyr RL7A_DROME : 97- 104: ldktt AvkLfkl-L ekyrp RL7A_DROME : 193- 198: ivkgk Ar-Lgr--L vrrkt RL7A_HUMAN : 67- 73: lqrqr Ai-Lykr-L kvppa RL7A_HUMAN : 91- 97: ldrqt AtqLlk--L ahkyr RL7A_HUMAN : 187- 192: iikgk Ar-Lgr--L vhrkt RL7A_HUMAN : 257- 264: lekak AkeLatk-L g RL7A_MOUSE : 67- 73: lqrqr Ai-Lykr-L kvppa RL7A_MOUSE : 91- 97: ldrqt AtqLlk--L ahkyr RL7A_MOUSE : 187- 192: iikgk Ar-Lgh--L vhrkt RL7A_MOUSE : 257- 264: lekak AkeLatk-L g RL7A_ORYSA : 85- 92: ldknl AtnLfkm-L lkyrp RL7A_ORYSA : 85- 93: ldknl AtnLfkmlL kyrpe RS6_HALMA : 10- 17: dfdvp Ad-LeddaL ealev YEC6_YEAST : 8- 16: apnpk AfpLadaaL tqqil YEC6_YEAST : 14- 21: fplad Aa-LtqqiL dvvqq YEC6_YEAST : 27- 33: dvvqq AanLrq--L kkgan YEC6_YEAST : 28- 33: vvqqa An-Lrq--L kkgan YLXQ_BACSU : 35- 40: irnar Ak-Lvl--L tedas YLXQ_BACSU : 92- 98: tdqgf AnkLis--L ld YLXQ_BACSU : 92- 99: tdqgf AnkLisl-L d Number of patterns evaluated by Pratt:617 Total running time: 0 seconds