------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file RIBOSOMAL_L6_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L6_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL6_HALMA 177 RL6_METVA 182 RL9E_PEA 193 RL9_HUMAN 192 RL9_RAT 192 RL9_YEAST 191 Pratt run started at Thu Feb 6 21:06:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 43.8706 6( 6) T-x(2)-S-x(3)-N-x(3)-G-V-x(2)-G-x(2)-Y-x(2,4)-V-x(0,2)-Y-x(2)-F-P 2: 39.7005 6( 6) S-x(3)-N-x(3)-G-V-x(2)-G-x(2)-Y-x(2,4)-V-x(0,2)-Y-x(2)-F-P 3: 35.5305 6( 6) N-x(3)-G-V-x(2)-G-x(2)-Y-x(2,4)-V-x(0,2)-Y-x(2)-F-P 4: 32.3604 10( 6) K-x(0,2)-D-x-R-x-F-x-D-G-x-Y-x(3)-K 5: 29.1904 6( 6) D-x-R-x-F-x-D-G-x-Y-x(3)-K 6: 28.1904 7( 6) D-x(1,3)-R-x-F-x-D-G-x-Y-x(3)-K 7: 28.1904 8( 6) I-x(1,3)-N-F-L-G-x-K-x(2)-R 8: 27.1904 6( 6) V-x(2)-G-x(2)-Y-x(2,4)-V-x(0,2)-Y-x(2)-F-P 9: 27.1904 6( 6) G-x(3)-G-x(2)-Y-x(2,4)-V-x(0,2)-Y-x(2)-F-P 10: 25.0203 6( 6) R-x-F-x-D-G-x-Y-x(3)-K 11: 25.0203 6( 6) N-F-L-G-x-K-x(2)-R 12: 24.0203 6( 6) E-x(4)-G-x(3)-E-x-V-x(3,4)-A-x(3,4)-Q 13: 20.8503 6( 6) F-x-D-G-x-Y-x(3)-K 14: 20.8503 6( 6) F-L-G-x-K-x(2)-R 15: 19.8503 6( 6) G-x(3)-E-x-V-x(3,4)-A-x(3,4)-Q 16: 19.3503 10( 6) K-x(2,4)-R-x(4)-G-x(2,3)-V-x(3)-G 17: 16.6802 6( 6) D-G-x-Y-x(3)-K 18: 16.6802 8( 6) L-G-x-K-x(2)-R 19: 16.6802 6( 6) Y-x(5)-Y-x(2)-F-P 20: 16.1802 6( 6) E-x(0,1)-V-x(4)-A-x(3)-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 87.2731 6( 6) T-x(2)-S-x-[IV]-[DEQ]-N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] B 2: 87.0921 6( 6) E-[ILV]-x-[LV]-[DES]-G-[NPT]-[DNS]-x-E-x-V-x(3,4)-A-x(3,4)-Q-x-[ACT]-x(4)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] C 3: 86.9203 6( 6) E-x(0,1)-V-[GS]-[NQR]-[NST]-[AC]-A-x-[IL]-[ENQ]-Q-x-[CT]-x-[IV]-x(2)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] D 4: 83.1030 6( 6) S-x-[IV]-[DEQ]-N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] E 5: 74.4680 6( 6) G-[NPT]-[DNS]-x-E-x-V-x(3,4)-A-x(3,4)-Q-x-[ACT]-x(4)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] F 6: 73.1146 6( 6) N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] G 7: 62.2065 6( 6) G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] H 8: 58.0365 6( 6) V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] I 9: 52.4673 8( 6) I-x(1,3)-N-F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] J 10: 49.2973 6( 6) N-F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] K 11: 46.6286 10( 6) K-x(0,2)-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] L 12: 45.1272 6( 6) F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] M 13: 43.4585 6( 6) D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] N 14: 42.5172 6( 6) Y-x-[LM]-x(3)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] O 15: 42.4585 7( 6) D-x(1,3)-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] P 16: 40.4177 6( 6) L-G-[DEK]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] Q 17: 39.2885 6( 6) R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] R 18: 35.1184 6( 6) F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] S 19: 30.9484 6( 6) D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] T 20: 25.7305 10( 6) K-x(2,4)-R-x(3)-[DH]-G-x(2,3)-V-[ES]-x(2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 87.2731 6( 6) T-x(2)-S-x-[IV]-[DEQ]-N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 64- 101: mstig TfqShIENMFhGVTeGWEYgme-Vf-YSHFPMqVNVeGdE vvien RL6_METVA : 70- 107: tamvg TyrShIQNMIkGVSeGFEYkl--VirYAHFPMkVTFkGnT viidn RL9E_PEA : 74- 111: saair TalShVENLItGVTkGFRYkmrfV--YADFPInASItNdN ksiei RL9_HUMAN : 72- 109: latvr TicShVQNMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_RAT : 72- 109: latvr TicShVQNMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_YEAST : 70- 107: vaalr TvkSlVDNMItGVTkGYKYkmryV--YAHFPInVNIvEkD gakfi B 2: 87.0921 6( 6) E-[ILV]-x-[LV]-[DES]-G-[NPT]-[DNS]-x-E-x-V-x(3,4)-A-x(3,4)-Q-x-[ACT]-x(4)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 130- 172: eidge ELtVSGPDiEaVgqtaAdie-QlTrindKDvRvFqDGVYITRKP nrgda RL6_HALMA : 130- 172: eidge ELtVSGPDiEaVgqt-AadieQlTrindKDvRvFqDGVYITRKP nrgda RL6_METVA : 136- 178: kvnge EViVSGTNkEfVgqtaAnie-QaTkvkgRDtRiFqDGIYIVEKA gkvl RL6_METVA : 136- 178: kvnge EViVSGTNkEfVgqt-AanieQaTkvkgRDtRiFqDGIYIVEKA gkvl RL9E_PEA : 145- 187: ekvkd EVvLDGNDiElVsrscAlin-QkChvkkKDiRkFlDGIYVSEKG avvve RL9_HUMAN : 143- 185: qaqkd ELiLEGNDiElVsnsaAliq-QaTtvknKDiRkFlDGIYVSEKG tvqqa RL9_HUMAN : 143- 185: qaqkd ELiLEGNDiElVsns-AaliqQaTtvknKDiRkFlDGIYVSEKG tvqqa RL9_RAT : 143- 185: qaqkd ELiLEGNDiElVsnsaAliq-QaTtvknKDiRkFlDGIYVSEKG tvqqp RL9_RAT : 143- 185: qaqkd ELiLEGNDiElVsns-AaliqQaTtvknKDiRkFlDGIYVSEKG tvqqp RL9_YEAST : 143- 185: tnvkd EIvLSGNSvEdVsqnaAdlq-QiCrvrnKDiRkFlDGIYVSHKG fited RL9_YEAST : 143- 185: tnvkd EIvLSGNSvEdVsqn-AadlqQiCrvrnKDiRkFlDGIYVSHKG fited C 3: 86.9203 6( 6) E-x(0,1)-V-[GS]-[NQR]-[NST]-[AC]-A-x-[IL]-[ENQ]-Q-x-[CT]-x-[IV]-x(2)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 139- 172: sgpdi EaVGQTAAdIEQlTrIndKDvRvFqDGVYITRKP nrgda RL6_METVA : 145- 178: sgtnk EfVGQTAAnIEQaTkVkgRDtRiFqDGIYIVEKA gkvl RL9E_PEA : 154- 187: dgndi ElVSRSCAlINQkChVkkKDiRkFlDGIYVSEKG avvve RL9_HUMAN : 152- 185: egndi ElVSNSAAlIQQaTtVknKDiRkFlDGIYVSEKG tvqqa RL9_RAT : 152- 185: egndi ElVSNSAAlIQQaTtVknKDiRkFlDGIYVSEKG tvqqp RL9_YEAST : 152- 185: sgnsv EdVSQNAAdLQQiCrVrnKDiRkFlDGIYVSHKG fited D 4: 83.1030 6( 6) S-x-[IV]-[DEQ]-N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 67- 101: igtfq ShIENMFhGVTeGWEYgme-Vf-YSHFPMqVNVeGdE vvien RL6_METVA : 73- 107: vgtyr ShIQNMIkGVSeGFEYkl--VirYAHFPMkVTFkGnT viidn RL9E_PEA : 77- 111: irtal ShVENLItGVTkGFRYkmrfV--YADFPInASItNdN ksiei RL9_HUMAN : 75- 109: vrtic ShVQNMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_RAT : 75- 109: vrtic ShVQNMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_YEAST : 73- 107: lrtvk SlVDNMItGVTkGYKYkmryV--YAHFPInVNIvEkD gakfi E 5: 74.4680 6( 6) G-[NPT]-[DNS]-x-E-x-V-x(3,4)-A-x(3,4)-Q-x-[ACT]-x(4)-[KR]-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 135- 172: eltvs GPDiEaVgqtaAdie-QlTrindKDvRvFqDGVYITRKP nrgda RL6_HALMA : 135- 172: eltvs GPDiEaVgqt-AadieQlTrindKDvRvFqDGVYITRKP nrgda RL6_METVA : 141- 178: evivs GTNkEfVgqtaAnie-QaTkvkgRDtRiFqDGIYIVEKA gkvl RL6_METVA : 141- 178: evivs GTNkEfVgqt-AanieQaTkvkgRDtRiFqDGIYIVEKA gkvl RL9E_PEA : 150- 187: evvld GNDiElVsrscAlin-QkChvkkKDiRkFlDGIYVSEKG avvve RL9_HUMAN : 148- 185: elile GNDiElVsnsaAliq-QaTtvknKDiRkFlDGIYVSEKG tvqqa RL9_HUMAN : 148- 185: elile GNDiElVsns-AaliqQaTtvknKDiRkFlDGIYVSEKG tvqqa RL9_RAT : 148- 185: elile GNDiElVsnsaAliq-QaTtvknKDiRkFlDGIYVSEKG tvqqp RL9_RAT : 148- 185: elile GNDiElVsns-AaliqQaTtvknKDiRkFlDGIYVSEKG tvqqp RL9_YEAST : 148- 185: eivls GNSvEdVsqnaAdlq-QiCrvrnKDiRkFlDGIYVSHKG fited RL9_YEAST : 148- 185: eivls GNSvEdVsqn-AadlqQiCrvrnKDiRkFlDGIYVSHKG fited F 6: 73.1146 6( 6) N-[LM]-[FI]-x-G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 71- 101: qshie NMFhGVTeGWEYgme-Vf-YSHFPMqVNVeGdE vvien RL6_METVA : 77- 107: rshiq NMIkGVSeGFEYkl--VirYAHFPMkVTFkGnT viidn RL9E_PEA : 81- 111: lshve NLItGVTkGFRYkmrfV--YADFPInASItNdN ksiei RL9_HUMAN : 79- 109: cshvq NMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_RAT : 79- 109: cshvq NMIkGVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_YEAST : 77- 107: kslvd NMItGVTkGYKYkmryV--YAHFPInVNIvEkD gakfi G 7: 62.2065 6( 6) G-V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 75- 101: enmfh GVTeGWEYgme-Vf-YSHFPMqVNVeGdE vvien RL6_METVA : 81- 107: qnmik GVSeGFEYkl--VirYAHFPMkVTFkGnT viidn RL9E_PEA : 85- 111: enlit GVTkGFRYkmrfV--YADFPInASItNdN ksiei RL9_HUMAN : 83- 109: qnmik GVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_RAT : 83- 109: qnmik GVTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_YEAST : 81- 107: dnmit GVTkGYKYkmryV--YAHFPInVNIvEkD gakfi H 8: 58.0365 6( 6) V-[ST]-x-G-[FWY]-[EKR]-Y-x(2,4)-V-x(0,2)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 76- 101: nmfhg VTeGWEYgme-Vf-YSHFPMqVNVeGdE vvien RL6_METVA : 82- 107: nmikg VSeGFEYkl--VirYAHFPMkVTFkGnT viidn RL9E_PEA : 86- 111: nlitg VTkGFRYkmrfV--YADFPInASItNdN ksiei RL9_HUMAN : 84- 109: nmikg VTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_RAT : 84- 109: nmikg VTlGFRYkmrsV--YAHFPInVVIqEnG slvei RL9_YEAST : 82- 107: nmitg VTkGYKYkmryV--YAHFPInVNIvEkD gakfi I 9: 52.4673 8( 6) I-x(1,3)-N-F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] Occurences: 8(6) RL6_HALMA : 104- 128: gdevv Ie--NFLGEKaPRrTtIhgDTDveiDG eeltv RL6_METVA : 109- 134: kgntv Iid-NFLGEKyPRtAkVmeGVTvkvNG eeviv RL6_METVA : 110- 134: gntvi Id--NFLGEKyPRtAkVmeGVTvkvNG eeviv RL9E_PEA : 114- 140: ndnks IeirNFLGEKkVRkVdLldGVSiirSE kvkde RL9E_PEA : 116- 140: nksie Ir--NFLGEKkVRkVdLldGVSiirSE kvkde RL9_HUMAN : 114- 138: gslve Ir--NFLGEKyIRrVrMrpGVAcsvSQ aqkde RL9_RAT : 114- 138: gslve Ir--NFLGEKyIRrVrMrtGVAcsvSQ aqkde RL9_YEAST : 112- 138: dgakf IevrNFLGDKkIRnVpVrdGVTiefST nvkde J 10: 49.2973 6( 6) N-F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] Occurences: 6(6) RL6_HALMA : 106- 128: evvie NFLGEKaPRrTtIhgDTDveiDG eeltv RL6_METVA : 112- 134: tviid NFLGEKyPRtAkVmeGVTvkvNG eeviv RL9E_PEA : 118- 140: sieir NFLGEKkVRkVdLldGVSiirSE kvkde RL9_HUMAN : 116- 138: lveir NFLGEKyIRrVrMrpGVAcsvSQ aqkde RL9_RAT : 116- 138: lveir NFLGEKyIRrVrMrtGVAcsvSQ aqkde RL9_YEAST : 116- 138: fievr NFLGDKkIRnVpVrdGVTiefST nvkde K 11: 46.6286 10( 6) K-x(0,2)-D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 10(6) RL6_HALMA : 157- 172: trind K--DvRvFqDGVYITRKP nrgda RL6_METVA : 161- 178: qatkv KgrDtRiFqDGIYIVEKA gkvl RL9E_PEA : 170- 187: qkchv KkkDiRkFlDGIYVSEKG avvve RL9E_PEA : 171- 187: kchvk Kk-DiRkFlDGIYVSEKG avvve RL9E_PEA : 172- 187: chvkk K--DiRkFlDGIYVSEKG avvve RL9_HUMAN : 168- 185: qattv KnkDiRkFlDGIYVSEKG tvqqa RL9_HUMAN : 170- 185: ttvkn K--DiRkFlDGIYVSEKG tvqqa RL9_RAT : 168- 185: qattv KnkDiRkFlDGIYVSEKG tvqqp RL9_RAT : 170- 185: ttvkn K--DiRkFlDGIYVSEKG tvqqp RL9_YEAST : 170- 185: crvrn K--DiRkFlDGIYVSHKG fited L 12: 45.1272 6( 6) F-L-G-[DE]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] Occurences: 6(6) RL6_HALMA : 107- 128: vvien FLGEKaPRrTtIhgDTDveiDG eeltv RL6_METVA : 113- 134: viidn FLGEKyPRtAkVmeGVTvkvNG eeviv RL9E_PEA : 119- 140: ieirn FLGEKkVRkVdLldGVSiirSE kvkde RL9_HUMAN : 117- 138: veirn FLGEKyIRrVrMrpGVAcsvSQ aqkde RL9_RAT : 117- 138: veirn FLGEKyIRrVrMrtGVAcsvSQ aqkde RL9_YEAST : 117- 138: ievrn FLGDKkIRnVpVrdGVTiefST nvkde M 13: 43.4585 6( 6) D-x-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 158- 172: rindk DvRvFqDGVYITRKP nrgda RL6_METVA : 164- 178: kvkgr DtRiFqDGIYIVEKA gkvl RL9E_PEA : 173- 187: hvkkk DiRkFlDGIYVSEKG avvve RL9_HUMAN : 171- 185: tvknk DiRkFlDGIYVSEKG tvqqa RL9_RAT : 171- 185: tvknk DiRkFlDGIYVSEKG tvqqp RL9_YEAST : 171- 185: rvrnk DiRkFlDGIYVSHKG fited N 14: 42.5172 6( 6) Y-x-[LM]-x(3)-Y-[AS]-[DH]-F-P-[IM]-x-[AV]-[NSTV]-[FIV]-x-[EGN]-x-[DEGNT] Occurences: 6(6) RL6_HALMA : 82- 101: tegwe YgMevfYSHFPMqVNVeGdE vvien RL6_METVA : 88- 107: segfe YkLvirYAHFPMkVTFkGnT viidn RL9E_PEA : 92- 111: tkgfr YkMrfvYADFPInASItNdN ksiei RL9_HUMAN : 90- 109: tlgfr YkMrsvYAHFPInVVIqEnG slvei RL9_RAT : 90- 109: tlgfr YkMrsvYAHFPInVVIqEnG slvei RL9_YEAST : 88- 107: tkgyk YkMryvYAHFPInVNIvEkD gakfi O 15: 42.4585 7( 6) D-x(1,3)-R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 7(6) RL6_HALMA : 156- 172: ltrin DkdvRvFqDGVYITRKP nrgda RL6_HALMA : 158- 172: rindk Dv--RvFqDGVYITRKP nrgda RL6_METVA : 164- 178: kvkgr Dt--RiFqDGIYIVEKA gkvl RL9E_PEA : 173- 187: hvkkk Di--RkFlDGIYVSEKG avvve RL9_HUMAN : 171- 185: tvknk Di--RkFlDGIYVSEKG tvqqa RL9_RAT : 171- 185: tvknk Di--RkFlDGIYVSEKG tvqqp RL9_YEAST : 171- 185: rvrnk Di--RkFlDGIYVSHKG fited P 16: 40.4177 6( 6) L-G-[DEK]-K-x-[IPV]-R-x-[ATV]-x-[ILMV]-x(2)-[DG]-[TV]-[ADST]-x(3)-[DNS]-[EGQT] Occurences: 6(6) RL6_HALMA : 108- 128: vienf LGEKaPRrTtIhgDTDveiDG eeltv RL6_METVA : 114- 134: iidnf LGEKyPRtAkVmeGVTvkvNG eeviv RL9E_PEA : 120- 140: eirnf LGEKkVRkVdLldGVSiirSE kvkde RL9_HUMAN : 118- 138: eirnf LGEKyIRrVrMrpGVAcsvSQ aqkde RL9_RAT : 118- 138: eirnf LGEKyIRrVrMrtGVAcsvSQ aqkde RL9_YEAST : 118- 138: evrnf LGDKkIRnVpVrdGVTiefST nvkde Q 17: 39.2885 6( 6) R-x-F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 160- 172: ndkdv RvFqDGVYITRKP nrgda RL6_METVA : 166- 178: kgrdt RiFqDGIYIVEKA gkvl RL9E_PEA : 175- 187: kkkdi RkFlDGIYVSEKG avvve RL9_HUMAN : 173- 185: knkdi RkFlDGIYVSEKG tvqqa RL9_RAT : 173- 185: knkdi RkFlDGIYVSEKG tvqqp RL9_YEAST : 173- 185: rnkdi RkFlDGIYVSHKG fited R 18: 35.1184 6( 6) F-x-D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 162- 172: kdvrv FqDGVYITRKP nrgda RL6_METVA : 168- 178: rdtri FqDGIYIVEKA gkvl RL9E_PEA : 177- 187: kdirk FlDGIYVSEKG avvve RL9_HUMAN : 175- 185: kdirk FlDGIYVSEKG tvqqa RL9_RAT : 175- 185: kdirk FlDGIYVSEKG tvqqp RL9_YEAST : 175- 185: kdirk FlDGIYVSHKG fited S 19: 30.9484 6( 6) D-G-[IV]-Y-[IV]-[STV]-[EHR]-K-[AGP] Occurences: 6(6) RL6_HALMA : 164- 172: vrvfq DGVYITRKP nrgda RL6_METVA : 170- 178: trifq DGIYIVEKA gkvl RL9E_PEA : 179- 187: irkfl DGIYVSEKG avvve RL9_HUMAN : 177- 185: irkfl DGIYVSEKG tvqqa RL9_RAT : 177- 185: irkfl DGIYVSEKG tvqqp RL9_YEAST : 177- 185: irkfl DGIYVSHKG fited T 20: 25.7305 10( 6) K-x(2,4)-R-x(3)-[DH]-G-x(2,3)-V-[ES]-x(2)-G Occurences: 10(6) RL6_HALMA : 111- 128: nflge Kapr-RttiHGdtdVEidG eeltv RL6_METVA : 161- 179: qatkv KgrdtRifqDGiyiVEkaG kvl RL9E_PEA : 170- 187: qkchv KkkdiRkflDGiy-VSekG avvve RL9E_PEA : 171- 187: kchvk Kkdi-RkflDGiy-VSekG avvve RL9E_PEA : 172- 187: chvkk Kdi--RkflDGiy-VSekG avvve RL9_HUMAN : 168- 185: qattv KnkdiRkflDGiy-VSekG tvqqa RL9_HUMAN : 170- 185: ttvkn Kdi--RkflDGiy-VSekG tvqqa RL9_RAT : 168- 185: qattv KnkdiRkflDGiy-VSekG tvqqp RL9_RAT : 170- 185: ttvkn Kdi--RkflDGiy-VSekG tvqqp RL9_YEAST : 170- 185: crvrn Kdi--RkflDGiy-VShkG fited Number of patterns evaluated by Pratt:2656 Total running time: 1 seconds