------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file RIBOSOMAL_L6_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L6_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL6_ACYKS 177 RL6_BACST 177 RL6_BACSU 178 RL6_CHLTR 183 RL6_CYAPA 179 RL6_ECOLI 176 RL6_HAEIN 176 RL6_MICLU 178 RL6_MYCCA 180 RL6_STRCO 179 RL6_THETH 130 RM06_ACACA 181 RM06_MARPO 101 RM06_PROWI 194 RM06_YEAST 214 Pratt run started at Thu Feb 6 21:06:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 22( 15) K-G-x(0,1)-K-G 2: 12.5102 15( 15) L-x(3)-G-x-G 3: 12.0102 23( 15) G-x(0,1)-K-G 4: 11.5102 44( 15) K-x(0,1)-G-x(0,1)-K 5: 11.5102 22( 15) K-x(0,1)-K-x(0,1)-G 6: 11.5102 19( 15) P-x(3)-K-x(1,3)-K 7: 11.0102 18( 15) V-x(0,1)-K-x(3,5)-I 8: 11.0102 25( 15) P-x(3,4)-K-x(1,3)-K 9: 11.0102 27( 15) K-x(0,2)-L-x(4,5)-G 10: 10.5102 39( 15) K-x(0,2)-K-x(0,2)-K 11: 10.5102 24( 15) E-x(3,5)-K-x(3,5)-K 12: 10.5102 30( 15) K-x(1,3)-V-x(1,3)-G 13: 10.5102 40( 15) V-x(0,2)-G-x(0,2)-K 14: 8.3401 69( 15) K-G 15: 8.3401 46( 15) K-x(2)-K 16: 8.3401 24( 15) V-x(3)-K 17: 8.3401 27( 15) K-x(2)-L 18: 8.3401 28( 15) V-x(3)-V 19: 8.3401 25( 15) G-x-S 20: 8.3401 40( 15) V-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 23.6353 15( 15) L-x-[FILMV]-x-G-x-G-[FY]-[KR]-[ANV] B 2: 16.8448 15( 15) K-x(0,1)-K-G-[IPV]-x(4)-[ENQS] C 3: 16.1802 22( 15) K-G-x(0,1)-K-G D 4: 13.7298 17( 15) P-[DEGS]-x(2)-K-x(1,3)-K E 5: 13.1816 25( 15) V-x(0,2)-G-x(0,2)-K-[AGQ] F 6: 12.0102 23( 15) G-x(0,1)-K-G G 7: 11.5514 22( 15) K-G-[EK] H 8: 11.5102 44( 15) K-x(0,1)-G-x(0,1)-K I 9: 11.0102 18( 15) V-x(0,1)-K-x(3,5)-I J 10: 11.0102 25( 15) P-x(3,4)-K-x(1,3)-K K 11: 11.0102 27( 15) K-x(0,2)-L-x(4,5)-G L 12: 10.5102 39( 15) K-x(0,2)-K-x(0,2)-K M 13: 10.5102 24( 15) E-x(3,5)-K-x(3,5)-K N 14: 10.5102 30( 15) K-x(1,3)-V-x(1,3)-G O 15: 10.2601 28( 15) K-[AEGQT]-x-K P 16: 8.3401 24( 15) V-x(3)-K Q 17: 8.3401 27( 15) K-x(2)-L R 18: 8.3401 28( 15) V-x(3)-V S 19: 8.3401 25( 15) G-x-S T 20: 8.3401 40( 15) V-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 23.6353 15( 15) L-x-[FILMV]-x-G-x-G-[FY]-[KR]-[ANV] Occurences: 15(15) RL6_ACYKS : 87- 96: gftkk LqLvGvGYRA avkgn RL6_BACST : 86- 95: gyeka LeLvGvGYRA skqgk RL6_BACSU : 87- 96: gferg LeLvGvGYRA sksgn RL6_CHLTR : 88- 97: gfekr LeMiGvGFRA avqgs RL6_CYAPA : 87- 96: gferr LeIqGvGYRA qmdgk RL6_ECOLI : 86- 95: gftkk LqLvGvGYRA avkgn RL6_HAEIN : 86- 95: gftkk LvLvGvGYRA qlkgn RL6_MICLU : 90- 99: gfskq LeVvGtGYRV qakgq RL6_MYCCA : 88- 97: gfkke LqItGvGYKA avngs RL6_STRCO : 88- 97: gyvkk LeIsGvGYRV lakgs RL6_THETH : 86- 95: gyvke LlIkGiGYRA rlvgr RM06_ACACA : 87- 96: nyfsk LhMiGlGFKN filrk RM06_MARPO : 9- 18: kffcf LeIiGvGYKA stnaq RM06_PROWI : 93- 102: gfcvy LeIvGvGYRA allss RM06_YEAST : 122- 131: ghlav LrFvGtGYRA qlend B 2: 16.8448 15( 15) K-x(0,1)-K-G-[IPV]-x(4)-[ENQS] Occurences: 15(15) RL6_ACYKS : 158- 167: rpepy KgKGVryadE vvrtk RL6_BACST : 157- 166: ppepy KgKGIryegE lvrlk RL6_BACSU : 158- 167: spepy KgKGIryegE vvrrk RL6_CHLTR : 159- 168: ppepy KgKGIryenE yvrrk RL6_CYAPA : 158- 167: ppepy KgKGIrylgE nvkrk RL6_ECOLI : 157- 166: rpepy KgKGVryadE vvrtk RL6_HAEIN : 157- 166: rpepy KgKGVryadE vvrik RL6_MICLU : 161- 170: rpdpy KgKGVyageQ irrka RL6_MYCCA : 159- 168: kpepy KgKGIkyknE tiirk RL6_STRCO : 159- 168: kpdpy KaKGVkyegE virrk RL6_THETH : 24- 33: spglv KvKGPkgelS vpvsp RM06_ACACA : 157- 166: ksnfy KgKGVlqfkN fkftk RM06_MARPO : 82- 91: ppevy KgKGIqyrnE iihkk RM06_PROWI : 175- 184: ppsvy KgKGIrytnE kivtk RM06_YEAST : 195- 204: ppepy KgKGIyvndE tiklk C 3: 16.1802 22( 15) K-G-x(0,1)-K-G Occurences: 22(15) RL6_ACYKS : 158- 161: rpepy KG-KG vryad RL6_BACST : 26- 30: ntvtv KGpKG eltrt RL6_BACST : 157- 160: ppepy KG-KG iryeg RL6_BACSU : 27- 31: ntvav KGpKG eltrt RL6_BACSU : 158- 161: spepy KG-KG iryeg RL6_CHLTR : 27- 31: deisv KGpKG sltqv RL6_CHLTR : 159- 162: ppepy KG-KG iryen RL6_CYAPA : 27- 31: qvfsv KGpKG elskq RL6_CYAPA : 158- 161: ppepy KG-KG irylg RL6_ECOLI : 157- 160: rpepy KG-KG vryad RL6_HAEIN : 157- 160: rpepy KG-KG vryad RL6_MICLU : 27- 31: drvsv KGpKG pkgql RL6_MICLU : 30- 34: svkgp KGpKG qlehs RL6_MICLU : 161- 164: rpdpy KG-KG vyage RL6_MYCCA : 159- 162: kpepy KG-KG ikykn RL6_STRCO : 27- 31: rtvsv KGpKG sltht RL6_THETH : 26- 30: glvkv KGpKG elsvp RM06_ACACA : 157- 160: ksnfy KG-KG vlqfk RM06_MARPO : 82- 85: ppevy KG-KG iqyrn RM06_PROWI : 175- 178: ppsvy KG-KG irytn RM06_YEAST : 59- 63: qnitv KGpKG elsve RM06_YEAST : 195- 198: ppepy KG-KG iyvnd D 4: 13.7298 17( 15) P-[DEGS]-x(2)-K-x(1,3)-K Occurences: 17(15) RL6_ACYKS : 154- 160: rayrr PEpyKg--K gvrya RL6_BACST : 125- 133: leiev PSqtKiivK gadkq RL6_BACST : 153- 159: ravrp PEpyKg--K girye RL6_BACSU : 126- 134: ieiev PSqtKvvvK gtdke RL6_BACSU : 154- 160: ravrs PEpyKg--K girye RL6_CHLTR : 155- 161: rakrp PEpyKg--K girye RL6_CYAPA : 154- 160: ravrp PEpyKg--K giryl RL6_ECOLI : 153- 159: rayrr PEpyKg--K gvrya RL6_HAEIN : 153- 159: rayrr PEpyKg--K gvrya RL6_MICLU : 157- 163: rklrr PDpyKg--K gvyag RL6_MYCCA : 155- 161: rayrk PEpyKg--K gikyk RL6_STRCO : 155- 161: rnvrk PDpyKa--K gvkye RL6_THETH : 20- 26: qvqvs PGlvKv--K gpkge RM06_ACACA : 118- 126: iifri PDslKifcK knqvf RM06_MARPO : 78- 84: ksckp PEvyKg--K giqyr RM06_PROWI : 171- 177: rntrp PSvyKg--K giryt RM06_YEAST : 191- 197: rkfhp PEpyKg--K giyvn E 5: 13.1816 25( 15) V-x(0,2)-G-x(0,2)-K-[AGQ] Occurences: 25(15) RL6_ACYKS : 132- 139: sqtei VlkGvdKQ vigqa RL6_BACST : 25- 30: gntvt Vk-Gp-KG eltrt RL6_BACST : 75- 81: llanm Ve-GvsKG yekal RL6_BACST : 78- 85: nmveg VskGyeKA lelvg RL6_BACST : 132- 138: qtkii Vk-GadKQ rvgel RL6_BACSU : 26- 31: nntva Vk-Gp-KG eltrt RL6_BACSU : 76- 82: llgnm Ve-GvsKG fergl RL6_CHLTR : 26- 31: ndeis Vk-Gp-KG sltqv RL6_CYAPA : 26- 31: dqvfs Vk-Gp-KG elskq RL6_CYAPA : 173- 176: nvkrk V--G--KA gkk RL6_ECOLI : 131- 138: tqtei VlkGadKQ vigqv RL6_HAEIN : 131- 138: sqtei VlkGadKQ ligqv RL6_MICLU : 26- 31: gdrvs Vk-Gp-KG pkgql RL6_MICLU : 82- 89: nmveg VtnGfsKQ levvg RL6_MICLU : 135- 141: gnrvt Va-GidKQ qqvge RL6_MYCCA : 93- 97: lqitg V--Gy-KA avngs RL6_STRCO : 26- 31: grtvs Vk-Gp-KG sltht RL6_STRCO : 134- 140: pthfs Ve-GidKQ kvgev RL6_STRCO : 174- 177: virrk V--G--KA gk RL6_THETH : 25- 30: pglvk Vk-Gp-KG elsvp RM06_ACACA : 174- 178: ftklk V--Gk-KQ rfm RM06_MARPO : 14- 18: leiig V--Gy-KA stnaq RM06_MARPO : 80- 85: ckppe VykG--KG iqyrn RM06_PROWI : 173- 178: trpps VykG--KG irytn RM06_YEAST : 58- 63: sqnit Vk-Gp-KG elsve F 6: 12.0102 23( 15) G-x(0,1)-K-G Occurences: 23(15) RL6_ACYKS : 159- 161: pepyk G-KG vryad RL6_BACST : 27- 30: tvtvk GpKG eltrt RL6_BACST : 158- 160: pepyk G-KG iryeg RL6_BACSU : 28- 31: tvavk GpKG eltrt RL6_BACSU : 159- 161: pepyk G-KG iryeg RL6_CHLTR : 28- 31: eisvk GpKG sltqv RL6_CHLTR : 160- 162: pepyk G-KG iryen RL6_CYAPA : 28- 31: vfsvk GpKG elskq RL6_CYAPA : 159- 161: pepyk G-KG irylg RL6_ECOLI : 158- 160: pepyk G-KG vryad RL6_HAEIN : 158- 160: pepyk G-KG vryad RL6_MICLU : 28- 31: rvsvk GpKG pkgql RL6_MICLU : 31- 34: vkgpk GpKG qlehs RL6_MICLU : 162- 164: pdpyk G-KG vyage RL6_MYCCA : 29- 32: lvtit GsKG tlskq RL6_MYCCA : 160- 162: pepyk G-KG ikykn RL6_STRCO : 28- 31: tvsvk GpKG sltht RL6_THETH : 27- 30: lvkvk GpKG elsvp RM06_ACACA : 158- 160: snfyk G-KG vlqfk RM06_MARPO : 83- 85: pevyk G-KG iqyrn RM06_PROWI : 176- 178: psvyk G-KG irytn RM06_YEAST : 60- 63: nitvk GpKG elsve RM06_YEAST : 196- 198: pepyk G-KG iyvnd G 7: 11.5514 22( 15) K-G-[EK] Occurences: 22(15) RL6_ACYKS : 27- 29: qvisi KGK ngelt RL6_ACYKS : 158- 160: rpepy KGK gvrya RL6_BACST : 29- 31: tvkgp KGE ltrtf RL6_BACST : 157- 159: ppepy KGK girye RL6_BACSU : 30- 32: avkgp KGE ltrtf RL6_BACSU : 158- 160: spepy KGK girye RL6_CHLTR : 159- 161: ppepy KGK girye RL6_CYAPA : 30- 32: svkgp KGE lskqi RL6_CYAPA : 158- 160: ppepy KGK giryl RL6_ECOLI : 26- 28: qviti KGK ngelt RL6_ECOLI : 157- 159: rpepy KGK gvrya RL6_HAEIN : 26- 28: qlltv KGK ngels RL6_HAEIN : 157- 159: rpepy KGK gvrya RL6_MICLU : 161- 163: rpdpy KGK gvyag RL6_MYCCA : 159- 161: kpepy KGK gikyk RL6_STRCO : 45- 47: pidia KGE dgvln RL6_THETH : 29- 31: kvkgp KGE lsvpv RM06_ACACA : 157- 159: ksnfy KGK gvlqf RM06_MARPO : 82- 84: ppevy KGK giqyr RM06_PROWI : 175- 177: ppsvy KGK giryt RM06_YEAST : 62- 64: tvkgp KGE lsvev RM06_YEAST : 195- 197: ppepy KGK giyvn H 8: 11.5102 44( 15) K-x(0,1)-G-x(0,1)-K Occurences: 44(15) RL6_ACYKS : 27- 29: qvisi K-G-K ngelt RL6_ACYKS : 158- 160: rpepy K-G-K gvrya RL6_BACST : 26- 29: ntvtv K-GpK geltr RL6_BACST : 97- 100: gyras KqG-K klvls RL6_BACST : 97- 101: gyras KqGkK lvlsv RL6_BACST : 157- 159: ppepy K-G-K girye RL6_BACST : 171- 174: elvrl KeG-K tgk RL6_BACST : 174- 177: rlkeg KtG-K RL6_BACSU : 27- 30: ntvav K-GpK geltr RL6_BACSU : 98- 102: gyras KsGnK lvlnv RL6_BACSU : 158- 160: spepy K-G-K girye RL6_BACSU : 172- 175: evvrr KeG-K sak RL6_CHLTR : 27- 30: deisv K-GpK gsltq RL6_CHLTR : 159- 161: ppepy K-G-K girye RL6_CHLTR : 173- 176: eyvrr KaG-K aaktg RL6_CHLTR : 179- 182: agkaa KtG-K k RL6_CHLTR : 179- 183: agkaa KtGkK RL6_CYAPA : 27- 30: qvfsv K-GpK gelsk RL6_CYAPA : 158- 160: ppepy K-G-K giryl RL6_CYAPA : 172- 175: envkr KvG-K agkk RL6_CYAPA : 175- 178: krkvg KaG-K k RL6_CYAPA : 175- 179: krkvg KaGkK RL6_ECOLI : 26- 28: qviti K-G-K ngelt RL6_ECOLI : 157- 159: rpepy K-G-K gvrya RL6_HAEIN : 26- 28: qlltv K-G-K ngels RL6_HAEIN : 157- 159: rpepy K-G-K gvrya RL6_MICLU : 27- 30: drvsv K-GpK gpkgq RL6_MICLU : 30- 33: svkgp K-GpK gqleh RL6_MICLU : 161- 163: rpdpy K-G-K gvyag RL6_MICLU : 174- 177: eqirr KaG-K k RL6_MICLU : 174- 178: eqirr KaGkK RL6_MYCCA : 159- 161: kpepy K-G-K gikyk RL6_MYCCA : 161- 164: epykg K-GiK yknet RL6_MYCCA : 173- 176: etiir KeG-K aagk RL6_STRCO : 27- 30: rtvsv K-GpK gslth RL6_STRCO : 161- 164: dpyka K-GvK yegev RL6_STRCO : 173- 176: evirr KvG-K agk RL6_STRCO : 176- 179: rrkvg KaG-K RL6_THETH : 26- 29: glvkv K-GpK gelsv RM06_ACACA : 157- 159: ksnfy K-G-K gvlqf RM06_ACACA : 173- 176: kftkl KvG-K kqrfm RM06_ACACA : 173- 177: kftkl KvGkK qrfm RM06_MARPO : 82- 84: ppevy K-G-K giqyr RM06_MARPO : 96- 99: eiihk KqG-K kk RM06_MARPO : 96- 100: eiihk KqGkK k RM06_PROWI : 175- 177: ppsvy K-G-K giryt RM06_PROWI : 189- 192: ekivt KtG-K rk RM06_YEAST : 59- 62: qnitv K-GpK gelsv RM06_YEAST : 80- 83: ldkde KhG-K invtv RM06_YEAST : 195- 197: ppepy K-G-K giyvn I 9: 11.0102 18( 15) V-x(0,1)-K-x(3,5)-I Occurences: 18(15) RL6_ACYKS : 4- 11: msr VaKapvv-I pagve RL6_ACYKS : 17- 24: pagve V-KlngqvI sikgk RL6_BACST : 3- 10: sr VgKkpie-I pagvt RL6_BACSU : 3- 10: sr VgKklle-I psdvt RL6_CHLTR : 126- 132: glevs VeKntl--I sikgi RL6_CHLTR : 126- 134: glevs VeKntlisI kgink RL6_CYAPA : 141- 148: idkel VgKlaae-I ravrp RL6_ECOLI : 16- 23: pagvd V-KingqvI tikgk RL6_ECOLI : 97- 102: gyraa V-Kgnv--I nlslg RL6_HAEIN : 3- 10: sr VaKapvn-I pagve RL6_MICLU : 118- 124: shpvp V-Kvsqg-I tftve RL6_MYCCA : 127- 134: vviqa V-KptelaI tgidk RL6_STRCO : 85- 90: vtqgy V-Kkle--I sgvgy RL6_STRCO : 163- 170: ykakg V-KyegevI rrkvg RL6_THETH : 83- 88: vsegy V-Kell--I kgigy RM06_ACACA : 6- 13: mellk ViKsqdk-I tlkte RM06_MARPO : 80- 86: ckppe VyKgkg--I qyrne RM06_PROWI : 173- 179: trpps VyKgkg--I rytne RM06_YEAST : 142- 148: gkfvn V-Kvgas-I kqgld J 10: 11.0102 25( 15) P-x(3,4)-K-x(1,3)-K Occurences: 25(15) RL6_ACYKS : 154- 160: rayrr Pepy-Kg--K gvrya RL6_BACST : 125- 133: leiev Psqt-KiivK gadkq RL6_BACST : 152- 159: iravr PpepyKg--K girye RL6_BACST : 153- 159: ravrp Pepy-Kg--K girye RL6_BACSU : 126- 134: ieiev Psqt-KvvvK gtdke RL6_BACSU : 154- 160: ravrs Pepy-Kg--K girye RL6_CHLTR : 154- 161: vrakr PpepyKg--K girye RL6_CHLTR : 155- 161: rakrp Pepy-Kg--K girye RL6_CYAPA : 153- 160: iravr PpepyKg--K giryl RL6_CYAPA : 154- 160: ravrp Pepy-Kg--K giryl RL6_ECOLI : 153- 159: rayrr Pepy-Kg--K gvrya RL6_HAEIN : 153- 159: rayrr Pepy-Kg--K gvrya RL6_MICLU : 157- 163: rklrr Pdpy-Kg--K gvyag RL6_MYCCA : 155- 161: rayrk Pepy-Kg--K gikyk RL6_MYCCA : 157- 164: yrkpe Pykg-Kgi-K yknet RL6_STRCO : 155- 161: rnvrk Pdpy-Ka--K gvkye RL6_STRCO : 157- 164: vrkpd Pyka-Kgv-K yegev RL6_THETH : 20- 26: qvqvs Pglv-Kv--K gpkge RM06_ACACA : 118- 126: iifri Pdsl-KifcK knqvf RM06_MARPO : 77- 84: vksck PpevyKg--K giqyr RM06_MARPO : 78- 84: ksckp Pevy-Kg--K giqyr RM06_PROWI : 170- 177: irntr PpsvyKg--K giryt RM06_PROWI : 171- 177: rntrp Psvy-Kg--K giryt RM06_YEAST : 190- 197: lrkfh PpepyKg--K giyvn RM06_YEAST : 191- 197: rkfhp Pepy-Kg--K giyvn K 11: 11.0102 27( 15) K-x(0,2)-L-x(4,5)-G Occurences: 27(15) RL6_ACYKS : 85- 93: tegft Kk-LqlvgvG yraav RL6_ACYKS : 86- 93: egftk K--LqlvgvG yraav RL6_BACST : 84- 92: skgye Ka-LelvgvG yrask RL6_BACST : 100- 107: askqg Kk-Lvlsv-G yshpv RL6_BACST : 101- 107: skqgk K--Lvlsv-G yshpv RL6_BACSU : 102- 108: sksgn K--Lvlnv-G yshpv RL6_CHLTR : 86- 94: htgfe Kr-LemigvG fraav RL6_CHLTR : 128- 136: evsve KntLisik-G inkql RL6_CYAPA : 101- 108: aqmdg Kk-Lvlni-G fshpv RL6_CYAPA : 102- 108: qmdgk K--Lvlni-G fshpv RL6_ECOLI : 84- 92: tegft Kk-LqlvgvG yraav RL6_ECOLI : 85- 92: egftk K--LqlvgvG yraav RL6_HAEIN : 84- 92: tegft Kk-LvlvgvG yraql RL6_HAEIN : 85- 92: egftk K--LvlvgvG yraql RL6_MICLU : 88- 96: tngfs Kq-LevvgtG yrvqa RL6_MYCCA : 85- 94: vsegf KkeLqitgvG ykaav RL6_MYCCA : 86- 94: segfk Ke-LqitgvG ykaav RL6_MYCCA : 103- 109: avngs K--Lnlsl-G yshpv RL6_STRCO : 86- 94: tqgyv Kk-LeisgvG yrvla RL6_STRCO : 87- 94: qgyvk K--LeisgvG yrvla RL6_THETH : 84- 92: segyv KelLikgi-G yrarl RL6_THETH : 84- 92: segyv Ke-LlikgiG yrarl RM06_ACACA : 33- 42: fknkk KilLkitfsG elflk RM06_ACACA : 86- 93: ynyfs K--LhmiglG fknfi RM06_ACACA : 101- 108: nfilr Kh-Lyilv-G dcnyi RM06_MARPO : 51- 59: rvfcl KpnLicct-G mdhqk RM06_PROWI : 81- 88: klien Kf-Lgvsr-G fcvyl RM06_YEAST : 149- 157: vgasi KqgLdvpe-G ivvkt L 12: 10.5102 39( 15) K-x(0,2)-K-x(0,2)-K Occurences: 39(15) RL6_ACYKS : 172- 176: evvrt KeaK--K k RL6_ACYKS : 172- 177: evvrt KeaKk-K RL6_ACYKS : 175- 177: rtkea K--K--K RL6_BACST : 97- 101: gyras KqgK--K lvlsv RL6_BACST : 171- 177: elvrl KegKtgK RL6_BACSU : 172- 178: evvrr KegKsaK RL6_CHLTR : 173- 179: eyvrr KagKaaK tgkk RL6_CHLTR : 176- 182: rrkag KaaKtgK k RL6_CHLTR : 179- 183: agkaa KtgK--K RL6_CYAPA : 170- 175: lgenv Kr-KvgK agkk RL6_CYAPA : 172- 178: envkr KvgKagK k RL6_CYAPA : 175- 179: krkvg KagK--K RL6_ECOLI : 171- 175: evvrt KeaK--K k RL6_ECOLI : 171- 176: evvrt KeaKk-K RL6_ECOLI : 174- 176: rtkea K--K--K RL6_HAEIN : 171- 175: evvri KeaK--K k RL6_HAEIN : 171- 176: evvri KeaKk-K RL6_HAEIN : 174- 176: rikea K--K--K RL6_MICLU : 27- 33: drvsv KgpKgpK gqleh RL6_MICLU : 174- 178: eqirr KagK--K RL6_MYCCA : 159- 164: kpepy Kg-KgiK yknet RL6_MYCCA : 161- 166: epykg KgiKy-K netii RL6_STRCO : 159- 164: kpdpy Ka-KgvK yegev RL6_STRCO : 173- 179: evirr KvgKagK RL6_THETH : 24- 29: spglv Kv-KgpK gelsv RM06_ACACA : 16- 22: dkitl KteKvnK nvffy RM06_ACACA : 29- 32: vffyf Kn-K--K killk RM06_ACACA : 29- 33: vffyf KnkK--K illki RM06_ACACA : 29- 33: vffyf Kn-Kk-K illki RM06_ACACA : 31- 33: fyfkn K--K--K illki RM06_ACACA : 148- 152: fmsni KrvK--K snfyk RM06_ACACA : 165- 171: gvlqf KnfKftK lkvgk RM06_ACACA : 168- 173: qfknf KftKl-K vgkkq RM06_ACACA : 171- 176: nfkft Kl-KvgK kqrfm RM06_ACACA : 173- 177: kftkl KvgK--K qrfm RM06_MARPO : 95- 99: neiih K--KqgK kk RM06_MARPO : 96- 100: eiihk KqgK--K k RM06_MARPO : 96- 101: eiihk KqgKk-K RM06_MARPO : 99- 101: hkkqg K--K--K RM06_PROWI : 42- 46: ssinl K--KldK ngiac RM06_PROWI : 189- 194: ekivt KtgKr-K RM06_YEAST : 77- 83: flhld KdeKhgK invtv RM06_YEAST : 207- 211: ndeti Kl-Kd-K kik RM06_YEAST : 207- 212: ndeti Kl-KdkK ik RM06_YEAST : 209- 212: etikl Kd-K--K ik RM06_YEAST : 209- 214: etikl KdkKi-K RM06_YEAST : 209- 214: etikl Kd-KkiK RM06_YEAST : 211- 214: iklkd K--Ki-K M 13: 10.5102 24( 15) E-x(3,5)-K-x(3,5)-K Occurences: 24(15) RL6_ACYKS : 130- 138: cpsqt Eivl--Kgvd--K qvigq RL6_ACYKS : 167- 176: vryad Evvrt-Keak--K k RL6_ACYKS : 167- 177: vryad Evvrt-Keakk-K RL6_BACST : 76- 84: lanmv Egvs--Kgye--K alelv RL6_BACST : 123- 133: eglei EvpsqtKiiv--K gadkq RL6_BACST : 166- 177: iryeg Elvrl-KegktgK RL6_BACSU : 124- 134: egiei EvpsqtKvvv--K gtdke RL6_BACSU : 167- 178: iryeg Evvrr-KegksaK RL6_CHLTR : 168- 179: iryen Eyvrr-KagkaaK tgkk RL6_CYAPA : 167- 178: irylg Envkr-KvgkagK k RL6_ECOLI : 129- 137: cptqt Eivl--Kgad--K qvigq RL6_ECOLI : 166- 175: vryad Evvrt-Keak--K k RL6_ECOLI : 166- 176: vryad Evvrt-Keakk-K RL6_HAEIN : 129- 137: cpsqt Eivl--Kgad--K qligq RL6_HAEIN : 166- 175: vryad Evvri-Keak--K k RL6_HAEIN : 166- 176: vryad Evvri-Keakk-K RL6_MICLU : 169- 178: gvyag Eqirr-Kagk--K RL6_MYCCA : 45- 54: pliki Eveen-Klit--K rlneq RL6_MYCCA : 48- 60: kieve EnklitKrlneqK htkql RL6_MYCCA : 156- 166: ayrkp Epykg-Kgiky-K netii RL6_STRCO : 168- 179: vkyeg Evirr-KvgkagK RL6_THETH : 80- 89: vkgvs Egyv--Kelli-K gigyr RM06_ACACA : 2- 12: m EllkviKsqd--K itlkt RM06_MARPO : 91- 99: iqyrn Eiih--Kkqg--K kk RM06_MARPO : 91- 100: iqyrn Eiihk-Kqgk--K k RM06_MARPO : 91- 100: iqyrn Eiih--Kkqgk-K k RM06_MARPO : 91- 101: iqyrn Eiihk-Kqgkk-K RM06_MARPO : 91- 101: iqyrn Eiih--KkqgkkK RM06_PROWI : 184- 194: irytn Ekivt-Ktgkr-K RM06_YEAST : 134- 143: yraql Endg--Kfvnv-K vgasi RM06_YEAST : 204- 214: iyvnd Etikl-Kdkki-K N 14: 10.5102 30( 15) K-x(1,3)-V-x(1,3)-G Occurences: 30(15) RL6_ACYKS : 6- 14: msrva KapvVipaG vevkl RL6_ACYKS : 86- 93: egftk KlqlVgv-G yraav RL6_ACYKS : 138- 142: lkgvd Kq--Vi--G qaaad RL6_BACST : 100- 107: askqg Kkl-VlsvG yshpv RL6_BACST : 101- 107: skqgk Kl--VlsvG yshpv RL6_BACST : 129- 134: vpsqt Kii-Vk--G adkqr RL6_BACSU : 102- 108: sksgn Kl--VlnvG yshpv RL6_BACSU : 130- 135: vpsqt Kvv-Vk--G tdker RL6_BACSU : 130- 135: vpsqt Kv--Vvk-G tdker RL6_CHLTR : 78- 83: ianmv Kg--Vht-G fekrl RL6_CYAPA : 101- 108: aqmdg Kkl-VlniG fshpv RL6_CYAPA : 102- 108: qmdgk Kl--VlniG fshpv RL6_CYAPA : 170- 177: lgenv Krk-VgkaG kk RL6_ECOLI : 5- 13: srva KapvVvpaG vdvki RL6_ECOLI : 85- 92: egftk KlqlVgv-G yraav RL6_ECOLI : 137- 141: lkgad Kq--Vi--G qvaad RL6_HAEIN : 84- 90: tegft Kkl-Vlv-G vgyra RL6_HAEIN : 85- 90: egftk Kl--Vlv-G vgyra RL6_HAEIN : 85- 92: egftk KlvlVgv-G yraql RL6_MICLU : 88- 94: tngfs KqleVv--G tgyrv RL6_MICLU : 88- 96: tngfs KqleVvgtG yrvqa RL6_MICLU : 161- 168: rpdpy KgkgVya-G eqirr RL6_MICLU : 163- 168: dpykg Kg--Vya-G eqirr RL6_MYCCA : 96- 101: tgvgy Kaa-Vn--G sklnl RL6_STRCO : 159- 167: kpdpy KakgVkyeG evirr RL6_STRCO : 161- 167: dpyka Kg--VkyeG evirr RL6_THETH : 76- 81: ianav Kg--Vse-G yvkel RM06_ACACA : 126- 134: lkifc KknqVfilG esnve RM06_ACACA : 127- 134: kifck Knq-VfilG esnve RM06_MARPO : 76- 83: ivksc KppeVyk-G kgiqy RM06_PROWI : 81- 88: klien KflgVsr-G fcvyl RM06_PROWI : 185- 191: rytne Ki--VtktG krk RM06_YEAST : 138- 145: lendg KfvnVkv-G asikq O 15: 10.2601 28( 15) K-[AEGQT]-x-K Occurences: 28(15) RL6_ACYKS : 172- 175: evvrt KEaK kk RL6_BACST : 26- 29: ntvtv KGpK geltr RL6_BACST : 97- 100: gyras KQgK klvls RL6_BACST : 171- 174: elvrl KEgK tgk RL6_BACST : 174- 177: rlkeg KTgK RL6_BACSU : 27- 30: ntvav KGpK geltr RL6_BACSU : 172- 175: evvrr KEgK sak RL6_CHLTR : 27- 30: deisv KGpK gsltq RL6_CHLTR : 173- 176: eyvrr KAgK aaktg RL6_CHLTR : 176- 179: rrkag KAaK tgkk RL6_CHLTR : 179- 182: agkaa KTgK k RL6_CYAPA : 27- 30: qvfsv KGpK gelsk RL6_CYAPA : 175- 178: krkvg KAgK k RL6_ECOLI : 171- 174: evvrt KEaK kk RL6_HAEIN : 171- 174: evvri KEaK kk RL6_MICLU : 27- 30: drvsv KGpK gpkgq RL6_MICLU : 30- 33: svkgp KGpK gqleh RL6_MICLU : 174- 177: eqirr KAgK k RL6_MYCCA : 161- 164: epykg KGiK yknet RL6_MYCCA : 173- 176: etiir KEgK aagk RL6_STRCO : 27- 30: rtvsv KGpK gslth RL6_STRCO : 161- 164: dpyka KGvK yegev RL6_STRCO : 176- 179: rrkvg KAgK RL6_THETH : 26- 29: glvkv KGpK gelsv RM06_ACACA : 16- 19: dkitl KTeK vnknv RM06_MARPO : 96- 99: eiihk KQgK kk RM06_PROWI : 189- 192: ekivt KTgK rk RM06_YEAST : 59- 62: qnitv KGpK gelsv P 16: 8.3401 24( 15) V-x(3)-K Occurences: 24(15) RL6_ACYKS : 23- 27: klngq VisiK gknge RL6_ACYKS : 168- 172: ryade VvrtK eakkk RL6_BACST : 25- 29: gntvt VkgpK geltr RL6_BACSU : 26- 30: nntva VkgpK geltr RL6_BACSU : 168- 172: ryege VvrrK egksa RL6_CHLTR : 26- 30: ndeis VkgpK gsltq RL6_CHLTR : 124- 128: ptgle VsveK ntlis RL6_CYAPA : 23- 27: sikdq VfsvK gpkge RL6_CYAPA : 26- 30: dqvfs VkgpK gelsk RL6_ECOLI : 22- 26: kingq VitiK gknge RL6_ECOLI : 167- 171: ryade VvrtK eakkk RL6_HAEIN : 167- 171: ryade VvriK eakkk RL6_MICLU : 26- 30: gdrvs VkgpK gpkgq RL6_MYCCA : 46- 50: likie VeenK litkr RL6_MYCCA : 99- 103: gykaa VngsK lnlsl RL6_STRCO : 26- 30: grtvs VkgpK gslth RL6_STRCO : 169- 173: kyege VirrK vgkag RL6_THETH : 25- 29: pglvk VkgpK gelsv RM06_ACACA : 161- 165: ykgkg VlqfK nfkft RM06_MARPO : 47- 51: tpsvr VfclK pnlic RM06_MARPO : 72- 76: qfaai VkscK ppevy RM06_MARPO : 80- 84: ckppe VykgK giqyr RM06_PROWI : 173- 177: trpps VykgK giryt RM06_YEAST : 58- 62: sqnit VkgpK gelsv Q 17: 8.3401 27( 15) K-x(2)-L Occurences: 27(15) RL6_ACYKS : 86- 89: egftk KlqL vgvgy RL6_BACST : 29- 32: tvkgp KgeL trtfh RL6_BACST : 101- 104: skqgk KlvL svgys RL6_BACSU : 5- 8: srvg KklL eipsd RL6_BACSU : 30- 33: avkgp KgeL trtfh RL6_BACSU : 102- 105: sksgn KlvL nvgys RL6_CHLTR : 30- 33: svkgp KgsL tqvla RL6_CHLTR : 128- 131: evsve KntL isikg RL6_CYAPA : 30- 33: svkgp KgeL skqip RL6_CYAPA : 102- 105: qmdgk KlvL nigfs RL6_ECOLI : 85- 88: egftk KlqL vgvgy RL6_HAEIN : 85- 88: egftk KlvL vgvgy RL6_MICLU : 33- 36: gpkgp KgqL ehslp RL6_MYCCA : 31- 34: titgs KgtL skqfs RL6_MYCCA : 85- 88: vsegf KkeL qitgv RL6_MYCCA : 103- 106: avngs KlnL slgys RL6_STRCO : 30- 33: svkgp KgsL thtvv RL6_THETH : 29- 32: kvkgp KgeL svpvs RL6_THETH : 84- 87: segyv KelL ikgig RM06_ACACA : 12- 15: iksqd KitL ktekv RM06_ACACA : 32- 35: yfknk KkiL lkitf RM06_ACACA : 33- 36: fknkk KilL kitfs RM06_ACACA : 159- 162: nfykg KgvL qfknf RM06_MARPO : 51- 54: rvfcl KpnL icctg RM06_PROWI : 59- 62: fdiqn KqvL irsly RM06_YEAST : 62- 65: tvkgp KgeL svevp RM06_YEAST : 149- 152: vgasi KqgL dvpeg R 18: 8.3401 28( 15) V-x(3)-V Occurences: 28(15) RL6_ACYKS : 37- 41: eltrt VhdaV ivkqe RL6_ACYKS : 98- 102: gyraa VkgnV vnlal RL6_ACYKS : 132- 136: sqtei VlkgV dkqvi RL6_ACYKS : 136- 140: ivlkg VdkqV igqaa RL6_BACST : 14- 18: eipag VtvtV ngntv RL6_BACST : 44- 48: dmtit VegnV itvtr RL6_BACSU : 45- 49: dmeik VednV ltvar RL6_CHLTR : 41- 45: vlake VeiaV kgnev RL6_CYAPA : 51- 55: qndhl VverV aesll RL6_CYAPA : 72- 76: lcrtl VsnlV qgvfq RL6_CYAPA : 169- 173: ylgen VkrkV gkagk RL6_ECOLI : 10- 14: kapvv VpagV dvkin RL6_ECOLI : 97- 101: gyraa VkgnV inlsl RL6_ECOLI : 139- 143: gadkq VigqV aadlr RL6_HAEIN : 71- 75: taral VnamV igvte RL6_HAEIN : 87- 91: ftkkl VlvgV gyraq RL6_MICLU : 116- 120: gyshp VpvkV sqgit RL6_MYCCA : 123- 127: ipdgv ViqaV kptel RL6_STRCO : 11- 15: klphr VpagV dvtid RL6_STRCO : 93- 97: leisg VgyrV lakgs RL6_THETH : 10- 14: rlpip VpkgV qvqvs RL6_THETH : 14- 18: pvpkg VqvqV spglv RL6_THETH : 44- 48: elkvv VeenV vrver RM06_ACACA : 20- 24: lktek VnknV ffyfk RM06_MARPO : 41- 45: eirlq VtpsV rvfcl RM06_PROWI : 134- 138: dihyk VpngV rvflq RM06_YEAST : 121- 125: eghla VlrfV gtgyr RM06_YEAST : 140- 144: ndgkf VnvkV gasik S 19: 8.3401 25( 15) G-x-S Occurences: 25(15) RL6_ACYKS : 108- 110: vnlal GfS hpieh RL6_BACST : 77- 79: anmve GvS kgyek RL6_BACST : 107- 109: lvlsv GyS hpvei RL6_BACSU : 78- 80: gnmve GvS kgfer RL6_BACSU : 108- 110: lvlnv GyS hpvei RL6_BACSU : 174- 176: vrrke GkS ak RL6_CHLTR : 109- 111: ldlsi GvS hptkm RL6_CYAPA : 108- 110: lvlni GfS hpvvi RL6_ECOLI : 107- 109: inlsl GfS hpvdh RL6_HAEIN : 107- 109: ialsl GyS hpveh RL6_MICLU : 85- 87: egvtn GfS kqlev RL6_MICLU : 111- 113: lefdl GyS hpvpv RL6_MYCCA : 79- 81: qgmlt GvS egfkk RL6_MYCCA : 109- 111: lnlsl GyS hpvef RL6_STRCO : 67- 69: skalh GlS rtlva RL6_STRCO : 109- 111: lefsl GyS hpilv RL6_THETH : 77- 79: anavk GvS egyvk RL6_THETH : 99- 101: rarlv GrS ieltv RL6_THETH : 107- 109: ieltv GfS hpvvv RM06_ACACA : 134- 136: qvfil GeS nveif RM06_MARPO : 32- 34: lylkl GfS heirl RM06_PROWI : 35- 37: itgpl GsS sinlk RM06_PROWI : 84- 86: enkfl GvS rgfcv RM06_PROWI : 125- 127: ivlkl GhS hdihy RM06_YEAST : 145- 147: vnvkv GaS ikqgl T 20: 8.3401 40( 15) V-G Occurences: 40(15) RL6_ACYKS : 77- 78: lnamv VG vtegf RL6_ACYKS : 90- 91: kklql VG vgyra RL6_ACYKS : 92- 93: lqlvg VG yraav RL6_BACST : 3- 4: sr VG kkpie RL6_BACST : 89- 90: kalel VG vgyra RL6_BACST : 91- 92: lelvg VG yrask RL6_BACST : 106- 107: klvls VG yshpv RL6_BACST : 140- 141: adkqr VG elaan RL6_BACSU : 3- 4: sr VG kklle RL6_BACSU : 90- 91: rglel VG vgyra RL6_BACSU : 92- 93: lelvg VG yrask RL6_BACSU : 107- 108: klvln VG yshpv RL6_BACSU : 141- 142: tdker VG aiaan RL6_CHLTR : 93- 94: lemig VG fraav RL6_CHLTR : 142- 143: inkql VG efaac RL6_CYAPA : 92- 93: leiqg VG yraqm RL6_CYAPA : 141- 142: idkel VG klaae RL6_CYAPA : 173- 174: nvkrk VG kagkk RL6_ECOLI : 89- 90: kklql VG vgyra RL6_ECOLI : 91- 92: lqlvg VG yraav RL6_HAEIN : 89- 90: kklvl VG vgyra RL6_HAEIN : 91- 92: lvlvg VG yraql RL6_HAEIN : 118- 119: ehtlp VG itaec RL6_MICLU : 93- 94: kqlev VG tgyrv RL6_MICLU : 144- 145: dkqqq VG etaan RL6_MYCCA : 93- 94: lqitg VG ykaav RL6_MYCCA : 142- 143: idkql VG qvaan RL6_STRCO : 93- 94: leisg VG yrvla RL6_STRCO : 142- 143: idkqk VG evaan RL6_STRCO : 174- 175: virrk VG kagk RL6_THETH : 98- 99: yrarl VG rsiel RL6_THETH : 106- 107: sielt VG fshpv RM06_ACACA : 107- 108: hlyil VG dcnyi RM06_ACACA : 174- 175: ftklk VG kkqrf RM06_MARPO : 14- 15: leiig VG ykast RM06_PROWI : 96- 97: vylei VG vgyra RM06_PROWI : 98- 99: leivg VG yraal RM06_YEAST : 19- 20: flrsq VG slply RM06_YEAST : 125- 126: avlrf VG tgyra RM06_YEAST : 144- 145: fvnvk VG asikq Number of patterns evaluated by Pratt:271 Total running time: 1 seconds