------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 36 sequences from file RIBOSOMAL_L5 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 36 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L5.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: R16A_ARATH 182 R16B_ARATH 184 RL11_DROME 184 RL11_HUMAN 177 RL11_LEICH 188 RL11_RAT 177 RL16_ARATH 182 RL16_YEAST 173 RL21_TETTH 172 RL5_ACYKS 179 RL5_ASTLO 179 RL5_BACST 179 RL5_BACSU 179 RL5_CHLTR 155 RL5_CYAPA 181 RL5_DICDI 79 RL5_ECOLI 178 RL5_EUGGR 179 RL5_HAEIN 178 RL5_HALCU 28 RL5_HALMA 176 RL5_MEDSA 181 RL5_METVA 181 RL5_MICLU 191 RL5_MYCCA 180 RL5_PROVU 42 RL5_SALTY 42 RL5_SULAC 178 RL5_THEFL 182 RL5_THEMA 184 RL5_THETH 182 RM05_ACACA 177 RM05_ARATH 185 RM05_MARPO 188 RM05_OENBE 192 RM05_PROWI 231 Pratt run started at Thu Feb 6 21:06:01 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 7.8401 72( 36) K-x(1,2)-V 2: 7.3401 128( 36) K-x(0,2)-V 3: 7.3401 113( 36) E-x(1,3)-I 4: 7.3401 90( 36) R-x(1,3)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 7.8401 72( 36) K-x(1,2)-V B 2: 7.3401 128( 36) K-x(0,2)-V C 3: 7.3401 113( 36) E-x(1,3)-I D 4: 7.3401 90( 36) R-x(1,3)-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 7.8401 72( 36) K-x(1,2)-V Occurences: 72(36) R16A_ARATH : 18- 20: dikvq Kl-V lnisv R16A_ARATH : 147- 150: rrrrc KarV giqhr R16B_ARATH : 20- 22: dikvq Kl-V lnisv R16B_ARATH : 149- 152: rrrrc KtrV giqhr RL11_DROME : 72- 75: irrne KiaV hctvr RL11_HUMAN : 66- 69: irrne KiaV hcavr RL11_LEICH : 66- 69: irrne KiaV hctvr RL11_RAT : 66- 69: irrne KiaV hctvr RL16_ARATH : 18- 20: dikvq Kl-V lnisv RL16_ARATH : 147- 150: rrrrc KtrV giqhr RL16_YEAST : 15- 17: dlkie Kl-V lnisv RL16_YEAST : 63- 66: irrne KiaV hvtvr RL16_YEAST : 144- 147: rrkrc KgtV gnshk RL21_TETTH : 16- 18: evkia Kl-V inccv RL21_TETTH : 64- 67: ikrne KmaV hvtir RL5_ACYKS : 9- 12: lhdyy KdeV ikqlm RL5_ACYKS : 72- 74: itkar Ks-V agfki RL5_ASTLO : 33- 35: ipkin Kv-V isrgf RL5_BACST : 7- 9: nrlke Ky-V kevvp RL5_BACST : 10- 12: kekyv Ke-V vpalm RL5_BACST : 10- 13: kekyv KevV palms RL5_BACST : 33- 35: vpkie Ki-V inmgv RL5_BACSU : 33- 35: vpkie Ki-V inmgv RL5_BACSU : 64- 66: fiagq Kp-V vtrak RL5_BACSU : 64- 67: fiagq KpvV trakk RL5_CHLTR : 7- 10: qipvl KkiV ismgl RL5_CHLTR : 8- 10: ipvlk Ki-V ismgl RL5_CHLTR : 39- 42: visgq KplV trakn RL5_CYAPA : 6- 8: mvqrl Kt-V yeqev RL5_CYAPA : 34- 37: vpklk KitV nrglg RL5_CYAPA : 65- 68: eitgq KaiV trakk RL5_DICDI : 8- 10: glrie Kl-V lnicv RL5_ECOLI : 8- 11: lhdyy KdeV vkklm RL5_ECOLI : 71- 73: itkar Ks-V agfki RL5_EUGGR : 32- 35: rvpkl KkiV inrgf RL5_EUGGR : 33- 35: vpklk Ki-V inrgf RL5_EUGGR : 82- 85: fklke KmpV gmflt RL5_HAEIN : 22- 24: nkfgy Ks-V mqvpr RL5_HAEIN : 63- 66: aisgq KplV tkark RL5_HAEIN : 71- 73: vtkar Ks-V agfki RL5_HALCU : 18- 20: eprie Kv-V vhmgv RL5_HALCU : 18- 21: eprie KvvV hmgvg RL5_HALMA : 20- 22: eprie Kv-V vhmgi RL5_HALMA : 20- 23: eprie KvvV hmgig RL5_HALMA : 55- 58: vrtka KrtV gefdi RL5_MEDSA : 18- 20: eikvq Kl-V lnisv RL5_MEDSA : 147- 150: rrrrc KarV giqhr RL5_METVA : 19- 22: kpriq KvtV nfgvg RL5_METVA : 158- 161: shipa KhlV kkeea RL5_MICLU : 43- 45: vpglv Kv-V vnmgv RL5_MICLU : 43- 46: vpglv KvvV nmgvg RL5_MYCCA : 34- 36: vpkiq Ki-V inmgi RL5_MYCCA : 65- 68: klsgq KpiV tkakk RL5_PROVU : 8- 11: lhdyy KdeV vqklm RL5_SALTY : 8- 11: lhdyy KdeV vnklm RL5_SULAC : 8- 11: mqeak KenV mrrvv RL5_SULAC : 19- 22: rvvld KvtV nigvg RL5_SULAC : 47- 49: eltgv Kp-V ytkgr RL5_SULAC : 84- 86: avefl Kk-V lpavn RL5_THEFL : 36- 38: vprle Kv-V inqgl RL5_THEFL : 67- 70: litgq KpaV trakk RL5_THEMA : 14- 17: kdqye KeiV palmk RL5_THEMA : 34- 36: ihqvp Kl-V kivin RL5_THEMA : 37- 39: vpklv Ki-V inmgi RL5_THEMA : 68- 71: kitgq KpiV trark RL5_THETH : 36- 38: vprle Kv-V inqgl RM05_ACACA : 68- 70: qkpfi Kk-V kfsyi RM05_ARATH : 85- 88: gsnkd KgyV sdlar RM05_MARPO : 38- 41: vprlc KiiV vpkap RM05_MARPO : 51- 53: psnfi Kn-V klame RM05_MARPO : 82- 84: sfrfn Kf-V lnqes RM05_MARPO : 115- 117: ynfle Kl-V tiisf RM05_MARPO : 186- 188: sgflq Ke-V RM05_OENBE : 87- 90: esnkd KgyV sdlar RM05_PROWI : 46- 49: lqkyy KniV cqdlc RM05_PROWI : 70- 72: cvsln Ki-V cntss RM05_PROWI : 170- 173: ttayn KdyV vlnsn B 2: 7.3401 128( 36) K-x(0,2)-V Occurences: 128(36) R16A_ARATH : 15- 16: pmrdi K--V qklvl R16A_ARATH : 18- 20: dikvq Kl-V lnisv R16A_ARATH : 37- 38: ltras K--V leqls R16A_ARATH : 87- 88: lesgl K--V keyel R16A_ARATH : 147- 150: rrrrc KarV giqhr R16B_ARATH : 17- 18: pmrdi K--V qklvl R16B_ARATH : 20- 22: dikvq Kl-V lnisv R16B_ARATH : 39- 40: ltras K--V leqls R16B_ARATH : 89- 90: lesgl K--V keyel R16B_ARATH : 149- 152: rrrrc KtrV giqhr RL11_DROME : 43- 44: ltraa K--V leqlt RL11_DROME : 72- 75: irrne KiaV hctvr RL11_DROME : 93- 94: lergl K--V reyel RL11_HUMAN : 37- 38: ltraa K--V leqlt RL11_HUMAN : 66- 69: irrne KiaV hcavr RL11_HUMAN : 87- 88: lekgl K--V relel RL11_LEICH : 37- 38: ltras K--V leqlc RL11_LEICH : 66- 69: irrne KiaV hctvr RL11_LEICH : 87- 88: lekgl K--V kefel RL11_LEICH : 167- 168: mkwfe K--V hdgii RL11_RAT : 37- 38: ltraa K--V leqlt RL11_RAT : 66- 69: irrne KiaV hctvr RL11_RAT : 87- 88: lekgl K--V reyel RL16_ARATH : 15- 16: pmrdi K--V qklvl RL16_ARATH : 18- 20: dikvq Kl-V lnisv RL16_ARATH : 37- 38: ltras K--V leqls RL16_ARATH : 87- 88: lesgl K--V keyel RL16_ARATH : 147- 150: rrrrc KtrV giqhr RL16_YEAST : 15- 17: dlkie Kl-V lnisv RL16_YEAST : 34- 35: ltras K--V leqls RL16_YEAST : 63- 66: irrne KiaV hvtvr RL16_YEAST : 84- 85: lergl K--V keyql RL16_YEAST : 144- 147: rrkrc KgtV gnshk RL21_TETTH : 16- 18: evkia Kl-V inccv RL21_TETTH : 35- 36: ltkaa K--V lkdls RL21_TETTH : 64- 67: ikrne KmaV hvtir RL21_TETTH : 85- 86: ltrgl K--V kemel RL5_ACYKS : 9- 12: lhdyy KdeV ikqlm RL5_ACYKS : 72- 74: itkar Ks-V agfki RL5_ACYKS : 88- 89: ypigc K--V tlrge RL5_ACYKS : 145- 146: eidyd K--V drvrg RL5_ASTLO : 11- 12: siyit K--V cpilv RL5_ASTLO : 33- 34: ipkin K--V visrg RL5_ASTLO : 33- 35: ipkin Kv-V isrgf RL5_ASTLO : 78- 79: sisnf K--V kkgmp RL5_BACST : 7- 9: nrlke Ky-V kevvp RL5_BACST : 10- 12: kekyv Ke-V vpalm RL5_BACST : 10- 13: kekyv KevV palms RL5_BACST : 33- 35: vpkie Ki-V inmgv RL5_BACST : 88- 89: mpiga K--V tlrge RL5_BACST : 145- 146: eidyd K--V nkvrg RL5_BACST : 148- 149: ydkvn K--V rgmdi RL5_BACSU : 33- 35: vpkie Ki-V inmgv RL5_BACSU : 64- 66: fiagq Kp-V vtrak RL5_BACSU : 64- 67: fiagq KpvV trakk RL5_BACSU : 88- 89: mpiga K--V tlrge RL5_BACSU : 145- 146: eidyd K--V tkvrg RL5_BACSU : 148- 149: ydkvt K--V rgmdi RL5_CHLTR : 7- 10: qipvl KkiV ismgl RL5_CHLTR : 8- 10: ipvlk Ki-V ismgl RL5_CHLTR : 39- 42: visgq KplV trakn RL5_CHLTR : 63- 64: qgiga K--V tlrgi RL5_CYAPA : 6- 8: mvqrl Kt-V yeqev RL5_CYAPA : 34- 37: vpklk KitV nrglg RL5_CYAPA : 65- 68: eitgq KaiV trakk RL5_DICDI : 8- 10: glrie Kl-V lnicv RL5_DICDI : 27- 28: lvraa K--V leqlt RL5_ECOLI : 8- 11: lhdyy KdeV vkklm RL5_ECOLI : 71- 73: itkar Ks-V agfki RL5_ECOLI : 87- 88: ypigc K--V tlrge RL5_ECOLI : 144- 145: eidyd K--V drvrg RL5_EUGGR : 32- 35: rvpkl KkiV inrgf RL5_EUGGR : 33- 35: vpklk Ki-V inrgf RL5_EUGGR : 82- 85: fklke KmpV gmflt RL5_EUGGR : 148- 149: fdkmi K--V qglni RL5_HAEIN : 22- 24: nkfgy Ks-V mqvpr RL5_HAEIN : 63- 66: aisgq KplV tkark RL5_HAEIN : 71- 73: vtkar Ks-V agfki RL5_HAEIN : 87- 88: ypigc K--V tlrge RL5_HAEIN : 144- 145: eidyd K--V drvrg RL5_HALCU : 18- 19: eprie K--V vvhmg RL5_HALCU : 18- 20: eprie Kv-V vhmgv RL5_HALCU : 18- 21: eprie KvvV hmgvg RL5_HALMA : 20- 21: eprie K--V vvhmg RL5_HALMA : 20- 22: eprie Kv-V vhmgi RL5_HALMA : 20- 23: eprie KvvV hmgig RL5_HALMA : 55- 58: vrtka KrtV gefdi RL5_HALMA : 72- 73: dpiga K--V tlrde RL5_MEDSA : 15- 16: pmrei K--V qklvl RL5_MEDSA : 18- 20: eikvq Kl-V lnisv RL5_MEDSA : 37- 38: ltraa K--V leqls RL5_MEDSA : 87- 88: lesgl K--V keyel RL5_MEDSA : 147- 150: rrrrc KarV giqhr RL5_METVA : 19- 20: kpriq K--V tvnfg RL5_METVA : 19- 22: kpriq KvtV nfgvg RL5_METVA : 38- 39: ltiga K--V ietlt RL5_METVA : 71- 72: lpigl K--V tlrgk RL5_METVA : 91- 92: afvaf K--V sgkvl RL5_METVA : 95- 96: fkvsg K--V lyass RL5_METVA : 104- 105: assfd K--V gnfsf RL5_METVA : 158- 161: shipa KhlV kkeea RL5_MICLU : 9- 10: vqqte K--V tprlk RL5_MICLU : 43- 44: vpglv K--V vvnmg RL5_MICLU : 43- 45: vpglv Kv-V vnmgv RL5_MICLU : 43- 46: vpglv KvvV nmgvg RL5_MYCCA : 34- 36: vpkiq Ki-V inmgi RL5_MYCCA : 65- 68: klsgq KpiV tkakk RL5_MYCCA : 89- 90: maiga K--V tlrgk RL5_MYCCA : 146- 147: evdhd K--V irlrg RL5_PROVU : 8- 11: lhdyy KdeV vqklm RL5_SALTY : 8- 11: lhdyy KdeV vnklm RL5_SULAC : 8- 11: mqeak KenV mrrvv RL5_SULAC : 19- 20: rvvld K--V tvnig RL5_SULAC : 19- 22: rvvld KvtV nigvg RL5_SULAC : 47- 49: eltgv Kp-V ytkgr RL5_SULAC : 84- 86: avefl Kk-V lpavn RL5_SULAC : 85- 86: veflk K--V lpavn RL5_THEFL : 36- 37: vprle K--V vinqg RL5_THEFL : 36- 38: vprle Kv-V inqgl RL5_THEFL : 67- 70: litgq KpaV trakk RL5_THEMA : 14- 17: kdqye KeiV palmk RL5_THEMA : 34- 36: ihqvp Kl-V kivin RL5_THEMA : 37- 39: vpklv Ki-V inmgi RL5_THEMA : 68- 71: kitgq KpiV trark RL5_THEMA : 92- 93: mpigl K--V tlrga RL5_THEMA : 114- 115: nivlp K--V rdfrg RL5_THETH : 36- 37: vprle K--V vinqg RL5_THETH : 36- 38: vprle Kv-V inqgl RM05_ACACA : 68- 70: qkpfi Kk-V kfsyi RM05_ACACA : 69- 70: kpfik K--V kfsyi RM05_ACACA : 174- 175: nmfli K--V kn RM05_ARATH : 85- 88: gsnkd KgyV sdlar RM05_MARPO : 38- 41: vprlc KiiV vpkap RM05_MARPO : 51- 53: psnfi Kn-V klame RM05_MARPO : 82- 84: sfrfn Kf-V lnqes RM05_MARPO : 115- 117: ynfle Kl-V tiisf RM05_MARPO : 186- 188: sgflq Ke-V RM05_OENBE : 87- 90: esnkd KgyV sdlar RM05_PROWI : 46- 49: lqkyy KniV cqdlc RM05_PROWI : 70- 72: cvsln Ki-V cntss RM05_PROWI : 170- 173: ttayn KdyV vlnsn C 3: 7.3401 113( 36) E-x(1,3)-I Occurences: 113(36) R16A_ARATH : 65- 67: girrn Ek--I acyvt R16A_ARATH : 110- 112: gfgiq Eh--I dlgir R16A_ARATH : 170- 173: fqvky Egv-I lnksq R16B_ARATH : 67- 69: girrn Ek--I acyvt R16B_ARATH : 112- 114: gfgiq Eh--I dlgik R16B_ARATH : 172- 175: fqvky Egv-I lnksq RL11_DROME : 18- 22: aqepd EdlhI rklcl RL11_DROME : 71- 73: girrn Ek--I avhct RL11_DROME : 85- 87: rgaka Ee--I lergl RL11_DROME : 116- 118: gfgiq Eh--I dlgik RL11_HUMAN : 13- 16: enpmr Elr-I rklcl RL11_HUMAN : 65- 67: girrn Ek--I avhca RL11_HUMAN : 79- 81: rgaka Ee--I lekgl RL11_HUMAN : 110- 112: gfgiq Eh--I dlgie RL11_LEICH : 65- 67: girrn Ek--I avhct RL11_LEICH : 110- 112: gfgid Eh--I dlgik RL11_RAT : 13- 16: enpmr Elr-I rklcl RL11_RAT : 65- 67: girrn Ek--I avhct RL11_RAT : 79- 81: rgaka Ee--I lekgl RL11_RAT : 110- 112: gfgiq Eh--I dlgik RL16_ARATH : 65- 67: girrn Ek--I acyvt RL16_ARATH : 110- 112: gfgiq Eh--I dlgik RL16_ARATH : 170- 173: fqvky Egv-I lnksq RL16_YEAST : 62- 64: girrn Ek--I avhvt RL16_YEAST : 76- 78: rgpka Ee--I lergl RL16_YEAST : 107- 109: gfgid Eh--I dlgik RL21_TETTH : 11- 14: enkmr Evk-I aklvi RL21_TETTH : 108- 110: gfgiq Eh--I dlgmk RL21_TETTH : 157- 160: qmisk Eec-I nwfkt RL21_TETTH : 158- 160: miske Ec--I nwfkt RL5_ACYKS : 11- 13: dyykd Ev--I kqlms RL5_ACYKS : 32- 34: qvprv Ek--I tlnmg RL5_ACYKS : 42- 44: nmgvg Ea--I adkkl RL5_ACYKS : 101- 104: mweff Erl-I siavp RL5_ACYKS : 134- 136: smgvr Eq--I ifpei RL5_ACYKS : 134- 137: smgvr Eqi-I fpeid RL5_ASTLO : 27- 31: ytnff EipkI nkvvi RL5_ASTLO : 56- 60: esllv ElknI sgqkp RL5_ASTLO : 134- 137: nvgls Eqs-I fpeie RL5_ASTLO : 142- 146: ifpei EyssI lknkg RL5_BACST : 32- 34: qvpki Ek--I vinmg RL5_BACST : 32- 36: qvpki EkivI nmgvg RL5_BACST : 56- 60: dsave EltlI agqrp RL5_BACST : 134- 137: tlgik Eql-I fpeid RL5_BACSU : 32- 34: qvpki Ek--I vinmg RL5_BACSU : 32- 36: qvpki EkivI nmgvg RL5_BACSU : 56- 60: dsave EltfI agqkp RL5_BACSU : 81- 85: gfrlr EgmpI gakvt RL5_BACSU : 134- 137: tlgik Eql-I fpeid RL5_CHLTR : 31- 35: qahle ElavI sgqkp RL5_CHLTR : 56- 60: gfklr EgqgI gakvt RL5_CYAPA : 10- 14: lktvy EqevI kqlmt RL5_CYAPA : 12- 14: tvyeq Ev--I kqlmt RL5_CYAPA : 57- 61: easvk EiteI tgqka RL5_CYAPA : 135- 138: nlglk Eql-I fpevd RL5_CYAPA : 148- 150: dydsi Eq--I rgmdi RL5_DICDI : 55- 57: nirrn Eq--I aahvt RL5_DICDI : 70- 74: gekaa EileI glnvr RL5_ECOLI : 31- 33: qvprv Ek--I tlnmg RL5_ECOLI : 41- 43: nmgvg Ea--I adkkl RL5_ECOLI : 100- 103: mweff Erl-I tiavp RL5_ECOLI : 133- 135: smgvr Eq--I ifpei RL5_ECOLI : 133- 136: smgvr Eqi-I fpeid RL5_EUGGR : 10- 12: ksfyl Et--I ipklk RL5_EUGGR : 10- 13: ksfyl Eti-I pklke RL5_EUGGR : 56- 59: evlln Ele-I isgqk RL5_EUGGR : 56- 60: evlln EleiI sgqkp RL5_EUGGR : 58- 60: llnel Ei--I sgqkp RL5_EUGGR : 172- 175: ffllk Elg-I pfrd RL5_HAEIN : 31- 33: qvpri Ek--I tlnmg RL5_HAEIN : 100- 103: mweff Erl-I tiavp RL5_HAEIN : 133- 135: smgvr Eq--I ifpei RL5_HAEIN : 133- 136: smgvr Eqi-I fpeid RL5_HALCU : 13- 16: fhemr Epr-I ekvvv RL5_HALMA : 15- 18: fhemr Epr-I ekvvv RL5_HALMA : 38- 40: dlana Ed--I lgeit RL5_HALMA : 60- 63: krtvg Efd-I regdp RL5_HALMA : 65- 69: efdir EgdpI gakvt RL5_MEDSA : 65- 67: girrn Ek--I acyvt RL5_MEDSA : 110- 112: gfgiq Eh--I dlgik RL5_MEDSA : 170- 173: fqvky Egv-I lnksq RL5_METVA : 114- 116: sfgvp Eh--I dfpgq RL5_METVA : 164- 167: hlvkk Eea-I eyiek RL5_METVA : 165- 167: lvkke Ea--I eyiek RL5_METVA : 168- 170: keeai Ey--I ekkfg RL5_MICLU : 20- 22: ktkyr Ee--I rgrlq RL5_MICLU : 91- 95: qfklr EgmpI gthat RL5_MYCCA : 82- 86: vfklr EgmaI gakvt RL5_MYCCA : 135- 137: ytgik Eq--I ifpev RL5_MYCCA : 135- 138: ytgik Eqi-I fpevd RL5_PROVU : 31- 33: qvprv Ek--I tlnmg RL5_SALTY : 31- 33: qvprv Ek--I tlnmg RL5_SULAC : 111- 115: sfgia EhvlI pgtry RL5_SULAC : 123- 126: trydp Eig-I fgmdv RL5_SULAC : 161- 164: hrvtk Eea-I nfmke RL5_SULAC : 162- 164: rvtke Ea--I nfmke RL5_THEFL : 18- 20: eevrp El--I rrfgy RL5_THEFL : 35- 39: evprl EkvvI nqglg RL5_THEFL : 48- 52: lgeak EdarI lekaa RL5_THEFL : 59- 63: ekaaq ElalI tgqkp RL5_THEFL : 137- 140: nlglr Eql-I fpeit RL5_THEMA : 13- 16: lkdqy Eke-I vpalm RL5_THEMA : 60- 64: erhan ElakI tgqkp RL5_THEMA : 149- 153: eldpd EvrrI qgmdm RL5_THETH : 18- 20: devrp El--I rrfgy RL5_THETH : 35- 39: evprl EkvvI nqglg RL5_THETH : 48- 52: lgeak EdarI lekas RL5_THETH : 59- 63: ekask ElalI agqkp RL5_THETH : 137- 140: nlglk Eql-I fpeit RM05_ACACA : 123- 127: kynrf EnslI lyidn RM05_ARATH : 150- 152: hfeif Eh--I rgfnv RM05_MARPO : 28- 30: lkiny En--I mevpr RM05_MARPO : 157- 159: hfeif Eh--I rgfdv RM05_MARPO : 175- 178: antqd Etv-I lwsgf RM05_OENBE : 33- 36: vpglc Eir-I vpkts RM05_OENBE : 126- 129: rveir Ens-I qfsme RM05_OENBE : 152- 154: hfeif Eh--I rrfnv RM05_PROWI : 83- 87: khyag EkesI lpaft RM05_PROWI : 85- 87: yagek Es--I lpaft RM05_PROWI : 95- 97: aftal Em--I tgqkp RM05_PROWI : 138- 141: myrfl Eky-I sivst D 4: 7.3401 90( 36) R-x(1,3)-I Occurences: 90(36) R16A_ARATH : 12- 14: lsnpm Rd--I kvqkl R16A_ARATH : 57- 61: arytv RsfgI rrnek R16A_ARATH : 63- 67: sfgir RnekI acyvt R16A_ARATH : 149- 152: rrcka Rvg-I qhrvt R16B_ARATH : 14- 16: lsnpm Rd--I kvqkl R16B_ARATH : 59- 63: arytv RsfgI rrnek R16B_ARATH : 65- 69: sfgir RnekI acyvt R16B_ARATH : 151- 154: rrckt Rvg-I qhrvt RL11_DROME : 63- 67: arytv RsfgI rrnek RL11_DROME : 69- 73: sfgir RnekI avhct RL11_HUMAN : 12- 16: kenpm RelrI rklcl RL11_HUMAN : 57- 61: arytv RsfgI rrnek RL11_HUMAN : 63- 67: sfgir RnekI avhca RL11_HUMAN : 146- 150: adkkr RtgcI gakhr RL11_LEICH : 12- 14: aanpm Re--I vvkkl RL11_LEICH : 57- 61: arltv RtfgI rrnek RL11_LEICH : 63- 67: tfgir RnekI avhct RL11_RAT : 12- 16: kenpm RelrI rklcl RL11_RAT : 57- 61: arytv RsfgI rrnek RL11_RAT : 63- 67: sfgir RnekI avhct RL11_RAT : 146- 150: adkkr RtgcI gakhr RL16_ARATH : 12- 14: lsnpm Rd--I kvqkl RL16_ARATH : 57- 61: arytv RsfgI rrnek RL16_ARATH : 63- 67: sfgir RnekI acyvt RL16_ARATH : 149- 152: rrckt Rvg-I qhrvt RL16_YEAST : 9- 13: aqnpm RdlkI eklvl RL16_YEAST : 54- 58: arytv RtfgI rrnek RL16_YEAST : 60- 64: tfgir RnekI avhvt RL21_TETTH : 10- 14: kenkm RevkI aklvi RL21_TETTH : 51- 54: vfsra Ryt-I rsfgi RL21_TETTH : 55- 59: aryti RsfgI krnek RL21_TETTH : 77- 79: rgdka Rd--I ltrgl RL5_ACYKS : 30- 34: vmqvp RvekI tlnmg RL5_ACYKS : 102- 104: weffe Rl--I siavp RL5_ACYKS : 102- 106: weffe RlisI avpri RL5_ACYKS : 133- 136: ysmgv Req-I ifpei RL5_ACYKS : 133- 137: ysmgv ReqiI fpeid RL5_ACYKS : 150- 154: kvdrv RgldI tittt RL5_ASTLO : 102- 104: ysfld Rl--I nlsfp RL5_BACST : 150- 154: kvnkv RgmdI vivtt RL5_BACSU : 150- 154: kvtkv RgmdI vivtt RL5_CHLTR : 67- 69: akvtl Rg--I rmydf RL5_CHLTR : 77- 81: ydfmd RfcnI vspri RL5_CYAPA : 103- 105: yafld Rl--I nlslp RL5_CYAPA : 116- 118: rirdf Rg--I taksf RL5_CYAPA : 151- 155: sieqi RgmdI sivtt RL5_DICDI : 2- 6: m RglrI eklvl RL5_DICDI : 47- 51: arytv RsfnI rrneq RL5_DICDI : 53- 57: sfnir RneqI aahvt RL5_ECOLI : 29- 33: vmqvp RvekI tlnmg RL5_ECOLI : 101- 103: weffe Rl--I tiavp RL5_ECOLI : 101- 105: weffe RlitI avpri RL5_ECOLI : 132- 135: ysmgv Req-I ifpei RL5_ECOLI : 132- 136: ysmgv ReqiI fpeid RL5_ECOLI : 149- 153: kvdrv RgldI tittt RL5_EUGGR : 102- 104: ysfld Rl--I nlslp RL5_HAEIN : 29- 33: vmqvp RiekI tlnmg RL5_HAEIN : 101- 103: weffe Rl--I tiavp RL5_HAEIN : 101- 105: weffe RlitI avpri RL5_HAEIN : 132- 135: ysmgv Req-I ifpei RL5_HAEIN : 132- 136: ysmgv ReqiI fpeid RL5_HAEIN : 149- 153: kvdrv RgldI tittt RL5_HALCU : 12- 16: dfhem ReprI ekvvv RL5_HALMA : 14- 18: dfhem ReprI ekvvv RL5_HALMA : 149- 151: rdkas Rs--I ptkhr RL5_MEDSA : 12- 14: lsnpm Re--I kvqkl RL5_MEDSA : 57- 61: arytv RsfgI rrnek RL5_MEDSA : 63- 67: sfgir RnekI acyvt RL5_MEDSA : 149- 152: rrcka Rvg-I qhrvt RL5_METVA : 32- 35: geagd Rlt-I gakvi RL5_METVA : 152- 155: srklk Rsh-I pakhl RL5_MICLU : 19- 22: lktky Ree-I rgrlq RL5_MICLU : 81- 84: mitka Rks-I aqfkl RL5_MICLU : 160- 164: kidrv RgmdI tvvtt RL5_MYCCA : 4- 7: mks Rle-I kykdq RL5_MYCCA : 151- 155: kvirl RgmdI tivts RL5_PROVU : 29- 33: vmqvp RvekI tlnmg RL5_SALTY : 29- 33: vmqvp RvekI tlnmg RL5_SULAC : 54- 57: vytkg Rks-I refgv RL5_THEFL : 16- 20: yyeev RpelI rrfgy RL5_THEFL : 98- 101: tlrrd Rmw-I flekl RL5_THEFL : 136- 140: ynlgl ReqlI fpeit RL5_THEFL : 153- 157: mvdal RgmdI avvtt RL5_THEMA : 75- 78: ivtra Rks-I snfki RL5_THEMA : 151- 153: dpdev Rr--I qgmdm RL5_THETH : 16- 20: yydev RpelI rrfgy RL5_THETH : 98- 101: tlrgd Rmw-I flekl RL5_THETH : 153- 157: mvdvp RgmdI avvtt RM05_ACACA : 82- 85: kkilk Rff-I svsln RM05_ARATH : 123- 127: fpvei RknsI qfsme RM05_MARPO : 35- 39: imevp RlckI ivvpk RM05_MARPO : 105- 108: arstl Rgh-I mynfl RM05_OENBE : 95- 98: vsdla Rqs-I lrghg RM05_OENBE : 121- 124: sllds Rve-I rensi RM05_OENBE : 125- 129: srvei RensI qfsme RM05_PROWI : 117- 121: stfkl RqnqI lgckn Number of patterns evaluated by Pratt:4 Total running time: 1 seconds