------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file RIBOSOMAL_L35AE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L35AE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: R37A_YEAST 106 R37B_YEAST 106 RL3A_HUMAN 110 RL3A_PYRWO 87 RL3A_RAT 110 RL3A_XENLA 110 Pratt run started at Thu Feb 6 21:06:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 53.2107 6( 6) G-K-x(0,1)-V-x(0,1)-R-x-H-G-x(2)-G-x-V-x-A-x-F-x(3)-L-P-x(4)-G 2: 49.0406 6( 6) K-x(0,1)-V-x(0,1)-R-x-H-G-x(2)-G-x-V-x-A-x-F-x(3)-L-P-x(4)-G 3: 40.2005 6( 6) V-x(3,4)-G-x(2)-G-x-V-x-A-x-F-x(3)-L-P-x(4)-G-x(2,4)-V 4: 36.0305 6( 6) V-x(3,4)-G-x(2)-G-x-V-x-A-x-F-x(3)-L-P-x(0,2)-A 5: 31.8604 6( 6) V-x(0,1)-R-x-H-G-x(2)-G-x-V-x-A-x(0,2)-R 6: 28.1904 6( 6) R-x-H-G-x(2)-G-x-V-x-A-x(0,2)-R 7: 24.0203 6( 6) H-G-x(2)-G-x-V-x-A-x(0,2)-R 8: 23.5203 8( 6) V-x(3,4)-F-x(3)-L-P-x(4)-G-x(2,4)-V 9: 23.0203 6( 6) V-x(3)-F-x(3)-L-P-x(0,2)-A-x(1,3)-G 10: 23.0203 6( 6) G-x(5)-F-x(3)-L-P-x(0,2)-A-x(1,3)-G 11: 19.8503 6( 6) G-x(2)-G-x-V-x-A-x(0,2)-R 12: 18.8503 6( 6) F-x(3)-L-P-x(0,2)-A-x(1,3)-G 13: 18.8503 6( 6) A-x(5)-L-P-x(0,2)-A-x(1,3)-G 14: 16.6802 6( 6) V-x(2)-K-x(2)-S-x(4)-K 15: 16.1802 8( 6) G-x-V-x(0,1)-R-A 16: 15.6802 6( 6) L-P-x(4)-G-x(2,4)-V 17: 15.6802 6( 6) F-x(2)-G-x(3,4)-A-x(2,3)-Y 18: 15.6802 6( 6) V-x(0,1)-R-A-x(4,5)-G 19: 15.6802 8( 6) K-x(2,3)-R-x(5)-G-x(3,4)-A 20: 15.6802 8( 6) L-x(1,2)-K-x(0,1)-I-x(2)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 86.9455 6( 6) G-K-x(0,1)-V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2)-[IV]-[ER]-[IV]-[FMV] B 2: 82.7755 6( 6) K-x(0,1)-V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2)-[IV]-[ER]-[IV]-[FMV] C 3: 62.1988 6( 6) V-x(3,4)-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] D 4: 59.5236 6( 6) V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] E 5: 56.7946 6( 6) V-x(3,4)-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x-[AGT]-x(2)-[AIV]-[ERS]-[IV] F 6: 55.8536 6( 6) R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] G 7: 50.2267 6( 6) G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] H 8: 49.0769 6( 6) H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] I 9: 46.0567 6( 6) V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] J 10: 44.9069 6( 6) G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] K 11: 42.3242 8( 6) V-x(3,4)-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] L 12: 41.8866 6( 6) A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] M 13: 39.4046 6( 6) G-x-V-x(0,1)-R-A-x(2)-[ENR]-x-[GN]-[LM]-[PV]-[AGL]-x(2)-[FIL]-x(3)-[ILV]-x-[AIV] N 14: 37.9887 6( 6) K-x(2,3)-R-[AT]-[HR]-x-[EN]-x-G-x(3,4)-A-x(2)-[DR]-x-[NV]-x-[IP]-[AV] O 15: 37.7166 6( 6) F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] P 16: 28.0344 6( 6) L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] Q 17: 21.4802 6( 6) L-x(1,2)-K-x(0,1)-I-x(2)-V-[HY]-x(4)-[AET] R 18: 18.9056 6( 6) F-x(2)-G-x(3,4)-A-x(2,3)-Y-x-[AE] S 19: 16.6802 6( 6) V-x(2)-K-x(2)-S-x(4)-K T 20: 16.1802 8( 6) G-x-V-x(0,1)-R-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 86.9455 6( 6) G-K-x(0,1)-V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 68- 100: irvmw GK-VtRTHGNsGvVrAtFRnNLPAkTFGasVRIF lypsn R37B_YEAST : 68- 100: irvmw GK-VtRTHGNsGvVrAtFRnNLPAkTFGasVRIF lypsn RL3A_HUMAN : 72- 104: trviw GK-VtRAHGNsGmVlAkFRsNLPAkAIGhrIRVM lypsr RL3A_PYRWO : 55- 87: gkilk GKiV-RVHGTkGaVrArFEkGLPGqALGdyVEIV RL3A_RAT : 72- 104: trviw GK-VtRAHGNsGmVrAkFRsNLPAkAIGhrIRVM lypsr RL3A_XENLA : 72- 104: trviw GK-VtRAHGNsGmVrAkFRsNLPAkAIGhrIRVM lypsr B 2: 82.7755 6( 6) K-x(0,1)-V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 69- 100: rvmwg K-VtRTHGNsGvVrAtFRnNLPAkTFGasVRIF lypsn R37B_YEAST : 69- 100: rvmwg K-VtRTHGNsGvVrAtFRnNLPAkTFGasVRIF lypsn RL3A_HUMAN : 73- 104: rviwg K-VtRAHGNsGmVlAkFRsNLPAkAIGhrIRVM lypsr RL3A_PYRWO : 56- 87: kilkg KiV-RVHGTkGaVrArFEkGLPGqALGdyVEIV RL3A_RAT : 73- 104: rviwg K-VtRAHGNsGmVrAkFRsNLPAkAIGhrIRVM lypsr RL3A_XENLA : 73- 104: rviwg K-VtRAHGNsGmVrAkFRsNLPAkAIGhrIRVM lypsr C 3: 62.1988 6( 6) V-x(3,4)-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] Occurences: 6(6) R37A_YEAST : 70- 99: vmwgk VtrthGNsGvVrAtFRnNLPAkTFGas--VrI flyps R37B_YEAST : 70- 99: vmwgk VtrthGNsGvVrAtFRnNLPAkTFGas--VrI flyps RL3A_HUMAN : 74- 105: viwgk VtrahGNsGmVlAkFRsNLPAkAIGhrirVmL ypsri RL3A_PYRWO : 58- 86: lkgki Vrvh-GTkGaVrArFEkGLPGqALGdy--VeI v RL3A_RAT : 74- 105: viwgk VtrahGNsGmVrAkFRsNLPAkAIGhrirVmL ypsri RL3A_XENLA : 74- 105: viwgk VtrahGNsGmVrAkFRsNLPAkAIGhrirVmL ypsri D 4: 59.5236 6( 6) V-x(0,1)-R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] Occurences: 6(6) R37A_YEAST : 70- 101: vmwgk VtRTHGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni R37B_YEAST : 70- 101: vmwgk VtRTHGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni RL3A_HUMAN : 74- 105: viwgk VtRAHGNsGmVlAkfRsNlPAkAiGhrirVmL ypsri RL3A_PYRWO : 58- 86: lkgki V-RVHGTkGaVrA--RfEkGLpGqAlgdyVeI v RL3A_RAT : 74- 105: viwgk VtRAHGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri RL3A_XENLA : 74- 105: viwgk VtRAHGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri E 5: 56.7946 6( 6) V-x(3,4)-G-[NT]-x-G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x-[AGT]-x(2)-[AIV]-[ERS]-[IV] Occurences: 6(6) R37A_YEAST : 70- 97: vmwgk VtrthGNsGvVrAtFRnNLP--AkTfgASV rifly R37B_YEAST : 70- 97: vmwgk VtrthGNsGvVrAtFRnNLP--AkTfgASV rifly RL3A_HUMAN : 74- 103: viwgk VtrahGNsGmVlAkFRsNLPakAiGhrIRV mlyps RL3A_PYRWO : 58- 86: lkgki Vrvh-GTkGaVrArFEkGLPgqAlGdyVEI v RL3A_RAT : 74- 103: viwgk VtrahGNsGmVrAkFRsNLPakAiGhrIRV mlyps RL3A_XENLA : 74- 103: viwgk VtrahGNsGmVrAkFRsNLPakAiGhrIRV mlyps F 6: 55.8536 6( 6) R-[ATV]-H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] Occurences: 6(6) R37A_YEAST : 72- 101: wgkvt RTHGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni R37B_YEAST : 72- 101: wgkvt RTHGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni RL3A_HUMAN : 76- 105: wgkvt RAHGNsGmVlAkfRsNlPAkAiGhrirVmL ypsri RL3A_PYRWO : 59- 86: kgkiv RVHGTkGaVrA--RfEkGLpGqAlgdyVeI v RL3A_RAT : 76- 105: wgkvt RAHGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri RL3A_XENLA : 76- 105: wgkvt RAHGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri G 7: 50.2267 6( 6) G-x-V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 78- 100: thgns GvVrAtFRnNLP--AktfGasVRIF lypsn R37B_YEAST : 78- 100: thgns GvVrAtFRnNLP--AktfGasVRIF lypsn RL3A_HUMAN : 82- 104: ahgns GmVlAkFRsNLPakAi--GhrIRVM lypsr RL3A_HUMAN : 82- 104: ahgns GmVlAkFRsNLP--AkaiGhrIRVM lypsr RL3A_PYRWO : 65- 87: vhgtk GaVrArFEkGLPgqAl--GdyVEIV RL3A_RAT : 82- 104: ahgns GmVrAkFRsNLPakAi--GhrIRVM lypsr RL3A_RAT : 82- 104: ahgns GmVrAkFRsNLP--AkaiGhrIRVM lypsr RL3A_XENLA : 82- 104: ahgns GmVrAkFRsNLPakAi--GhrIRVM lypsr RL3A_XENLA : 82- 104: ahgns GmVrAkFRsNLP--AkaiGhrIRVM lypsr H 8: 49.0769 6( 6) H-G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] Occurences: 6(6) R37A_YEAST : 74- 101: kvtrt HGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni R37B_YEAST : 74- 101: kvtrt HGNsGvVrAtfRnNlPAkTfGasvrIfL ypsni RL3A_HUMAN : 78- 105: kvtra HGNsGmVlAkfRsNlPAkAiGhrirVmL ypsri RL3A_PYRWO : 61- 86: kivrv HGTkGaVrA--RfEkGLpGqAlgdyVeI v RL3A_RAT : 78- 105: kvtra HGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri RL3A_XENLA : 78- 105: kvtra HGNsGmVrAkfRsNlPAkAiGhrirVmL ypsri I 9: 46.0567 6( 6) V-x-A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 80- 100: gnsgv VrAtFRnNLP--AktfGasVRIF lypsn R37B_YEAST : 80- 100: gnsgv VrAtFRnNLP--AktfGasVRIF lypsn RL3A_HUMAN : 84- 104: gnsgm VlAkFRsNLPakAi--GhrIRVM lypsr RL3A_HUMAN : 84- 104: gnsgm VlAkFRsNLP--AkaiGhrIRVM lypsr RL3A_PYRWO : 67- 87: gtkga VrArFEkGLPgqAl--GdyVEIV RL3A_RAT : 84- 104: gnsgm VrAkFRsNLPakAi--GhrIRVM lypsr RL3A_RAT : 84- 104: gnsgm VrAkFRsNLP--AkaiGhrIRVM lypsr RL3A_XENLA : 84- 104: gnsgm VrAkFRsNLPakAi--GhrIRVM lypsr RL3A_XENLA : 84- 104: gnsgm VrAkFRsNLP--AkaiGhrIRVM lypsr J 10: 44.9069 6( 6) G-[NT]-x-G-x-V-x-A-x(0,2)-R-x-[EN]-x-[GP]-[AL]-x-[AGT]-x-[AG]-x(4)-[IV]-x-[IL] Occurences: 6(6) R37A_YEAST : 75- 101: vtrth GNsGvVrAtfRnNlPAkTfGasvrIfL ypsni R37B_YEAST : 75- 101: vtrth GNsGvVrAtfRnNlPAkTfGasvrIfL ypsni RL3A_HUMAN : 79- 105: vtrah GNsGmVlAkfRsNlPAkAiGhrirVmL ypsri RL3A_PYRWO : 62- 86: ivrvh GTkGaVrA--RfEkGLpGqAlgdyVeI v RL3A_RAT : 79- 105: vtrah GNsGmVrAkfRsNlPAkAiGhrirVmL ypsri RL3A_XENLA : 79- 105: vtrah GNsGmVrAkfRsNlPAkAiGhrirVmL ypsri K 11: 42.3242 8( 6) V-x(3,4)-F-[ER]-x-[GN]-L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] Occurences: 8(6) R37A_YEAST : 79- 99: hgnsg VvratFRnNLPAkTFGas--VrI flyps R37A_YEAST : 80- 99: gnsgv Vrat-FRnNLPAkTFGas--VrI flyps R37B_YEAST : 79- 99: hgnsg VvratFRnNLPAkTFGas--VrI flyps R37B_YEAST : 80- 99: gnsgv Vrat-FRnNLPAkTFGas--VrI flyps RL3A_HUMAN : 84- 105: gnsgm Vlak-FRsNLPAkAIGhrirVmL ypsri RL3A_PYRWO : 67- 86: gtkga Vrar-FEkGLPGqALGdy--VeI v RL3A_RAT : 84- 105: gnsgm Vrak-FRsNLPAkAIGhrirVmL ypsri RL3A_XENLA : 84- 105: gnsgm Vrak-FRsNLPAkAIGhrirVmL ypsri L 12: 41.8866 6( 6) A-x-F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 82- 100: sgvvr AtFRnNLP--AktfGasVRIF lypsn R37B_YEAST : 82- 100: sgvvr AtFRnNLP--AktfGasVRIF lypsn RL3A_HUMAN : 86- 104: sgmvl AkFRsNLPakAi--GhrIRVM lypsr RL3A_HUMAN : 86- 104: sgmvl AkFRsNLP--AkaiGhrIRVM lypsr RL3A_PYRWO : 69- 87: kgavr ArFEkGLPgqAl--GdyVEIV RL3A_RAT : 86- 104: sgmvr AkFRsNLPakAi--GhrIRVM lypsr RL3A_RAT : 86- 104: sgmvr AkFRsNLP--AkaiGhrIRVM lypsr RL3A_XENLA : 86- 104: sgmvr AkFRsNLPakAi--GhrIRVM lypsr RL3A_XENLA : 86- 104: sgmvr AkFRsNLP--AkaiGhrIRVM lypsr M 13: 39.4046 6( 6) G-x-V-x(0,1)-R-A-x(2)-[ENR]-x-[GN]-[LM]-[PV]-[AGL]-x(2)-[FIL]-x(3)-[ILV]-x-[AIV] Occurences: 6(6) R37A_YEAST : 78- 99: thgns GvV-RAtfRnNLPAktFgasVrI flyps R37B_YEAST : 78- 99: thgns GvV-RAtfRnNLPAktFgasVrI flyps RL3A_HUMAN : 72- 94: trviw GkVtRAhgNsGMVLakFrsnLpA kaigh RL3A_PYRWO : 65- 86: vhgtk GaV-RArfEkGLPGqaLgdyVeI v RL3A_RAT : 82- 103: ahgns GmV-RAkfRsNLPAkaIghrIrV mlyps RL3A_XENLA : 82- 103: ahgns GmV-RAkfRsNLPAkaIghrIrV mlyps N 14: 37.9887 6( 6) K-x(2,3)-R-[AT]-[HR]-x-[EN]-x-G-x(3,4)-A-x(2)-[DR]-x-[NV]-x-[IP]-[AV] Occurences: 6(6) R37A_YEAST : 69- 90: rvmwg Kvt-RTHgNsGvvr-AtfRnNlPA ktfga R37B_YEAST : 69- 90: rvmwg Kvt-RTHgNsGvvr-AtfRnNlPA ktfga RL3A_HUMAN : 73- 94: rviwg Kvt-RAHgNsGmvl-AkfRsNlPA kaigh RL3A_PYRWO : 64- 87: rvhgt KgavRARfEkGlpgqAlgDyVeIV RL3A_RAT : 73- 94: rviwg Kvt-RAHgNsGmvr-AkfRsNlPA kaigh RL3A_XENLA : 73- 94: rviwg Kvt-RAHgNsGmvr-AkfRsNlPA kaigh O 15: 37.7166 6( 6) F-[ER]-x-[GN]-L-P-x(0,2)-A-x(1,3)-G-x(2)-[IV]-[ER]-[IV]-[FMV] Occurences: 6(6) R37A_YEAST : 84- 100: vvrat FRnNLP--AktfGasVRIF lypsn R37B_YEAST : 84- 100: vvrat FRnNLP--AktfGasVRIF lypsn RL3A_HUMAN : 88- 104: mvlak FRsNLPakAi--GhrIRVM lypsr RL3A_HUMAN : 88- 104: mvlak FRsNLP--AkaiGhrIRVM lypsr RL3A_PYRWO : 71- 87: avrar FEkGLPgqAl--GdyVEIV RL3A_RAT : 88- 104: mvrak FRsNLPakAi--GhrIRVM lypsr RL3A_RAT : 88- 104: mvrak FRsNLP--AkaiGhrIRVM lypsr RL3A_XENLA : 88- 104: mvrak FRsNLPakAi--GhrIRVM lypsr RL3A_XENLA : 88- 104: mvrak FRsNLP--AkaiGhrIRVM lypsr P 16: 28.0344 6( 6) L-P-[AG]-x-[AT]-[FIL]-G-x(2,4)-V-x-[IL] Occurences: 6(6) R37A_YEAST : 88- 99: tfrnn LPAkTFGas--VrI flyps R37B_YEAST : 88- 99: tfrnn LPAkTFGas--VrI flyps RL3A_HUMAN : 92- 105: kfrsn LPAkAIGhrirVmL ypsri RL3A_PYRWO : 75- 86: rfekg LPGqALGdy--VeI v RL3A_RAT : 92- 105: kfrsn LPAkAIGhrirVmL ypsri RL3A_XENLA : 92- 105: kfrsn LPAkAIGhrirVmL ypsri Q 17: 21.4802 6( 6) L-x(1,2)-K-x(0,1)-I-x(2)-V-[HY]-x(4)-[AET] Occurences: 6(6) R37A_YEAST : 44- 57: daqfy Lg-KrIayVYraskE vrgsk R37B_YEAST : 44- 57: eaqfy Lg-KrIayVYraskE vrgsk RL3A_HUMAN : 27- 39: rehta Ll-K-IegVYardeT efylg RL3A_PYRWO : 53- 66: psgki LkgK-IvrVHgtkgA vrarf RL3A_RAT : 27- 39: rehta Ll-K-IegVYardeT efylg RL3A_XENLA : 27- 39: rehta Ll-K-IegVYardeT efyfg R 18: 18.9056 6( 6) F-x(2)-G-x(3,4)-A-x(2,3)-Y-x-[AE] Occurences: 6(6) R37A_YEAST : 42- 54: pqdaq FylGkri-Ayv-YrA skevr R37B_YEAST : 42- 54: pqeaq FylGkri-Ayv-YrA skevr RL3A_HUMAN : 41- 53: rdete FylGkrc-Ayv-YkA knntv RL3A_PYRWO : 71- 85: avrar FekGlpgqAlgdYvE iv RL3A_RAT : 41- 53: rdete FylGkrc-Ayv-YkA knntv RL3A_XENLA : 41- 53: rdete FyfGkrc-Ayv-YkA knntv S 19: 16.6802 6( 6) V-x(2)-K-x(2)-S-x(4)-K Occurences: 6(6) R37A_YEAST : 8- 19: shrly VkgKhlSyqrsK rvnnp R37B_YEAST : 8- 19: shrly VkgKhlSyqrsK rvnnp RL3A_HUMAN : 84- 95: gnsgm VlaKfrSnlpaK aighr RL3A_PYRWO : 43- 54: ligrl VlwKspSgkilK gkivr RL3A_RAT : 84- 95: gnsgm VraKfrSnlpaK aighr RL3A_XENLA : 84- 95: gnsgm VraKfrSnlpaK aighr T 20: 16.1802 8( 6) G-x-V-x(0,1)-R-A Occurences: 8(6) R37A_YEAST : 78- 82: thgns GvV-RA tfrnn R37B_YEAST : 78- 82: thgns GvV-RA tfrnn RL3A_HUMAN : 72- 77: trviw GkVtRA hgnsg RL3A_PYRWO : 65- 69: vhgtk GaV-RA rfekg RL3A_RAT : 72- 77: trviw GkVtRA hgnsg RL3A_RAT : 82- 86: ahgns GmV-RA kfrsn RL3A_XENLA : 72- 77: trviw GkVtRA hgnsg RL3A_XENLA : 82- 86: ahgns GmV-RA kfrsn Number of patterns evaluated by Pratt:1154 Total running time: 1 seconds