------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file RIBOSOMAL_L34E_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L34E_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL34_AEDAL 129 RL34_PEA 120 RL34_RAT 116 RL34_TOBAC 120 YIF2_YEAST 121 Pratt run started at Thu Feb 6 21:05:59 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 5( 5) R-I-x-R-A-F-L-x(2)-E-Q-K-x-V-x(0,2)-V 2: 40.7005 5( 5) I-x-R-A-F-L-x(2)-E-Q-K-x-V-x(0,2)-V 3: 40.7005 5( 5) R-I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-x-V 4: 40.2005 8( 5) I-x(0,1)-R-A-F-L-x(2)-E-Q-K-x-V-x(0,2)-V 5: 36.5305 5( 5) R-A-F-L-x(2)-E-Q-K-x-V-x(0,2)-V 6: 36.5305 5( 5) I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-x-V 7: 36.5305 5( 5) Q-R-x-T-x-R-x(0,1)-R-x(2,3)-Y-x-T-x-S-N 8: 32.3604 5( 5) A-F-L-x(2)-E-Q-K-x-V-x(0,2)-V 9: 32.3604 5( 5) R-A-F-L-x(1,2)-E-x(0,1)-Q-K-x-V 10: 32.3604 5( 5) R-x-T-x-R-x(0,1)-R-x(2,3)-Y-x-T-x-S-N 11: 28.1904 5( 5) A-F-L-x(1,2)-E-x(0,1)-Q-K-x-V 12: 28.1904 5( 5) T-x-R-x(0,1)-R-x(2,3)-Y-x-T-x-S-N 13: 27.6904 5( 5) V-x-K-V-x-K-x-Q-x(3,4)-K-x(1,3)-K 14: 27.6904 5( 5) L-x(2)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K 15: 27.6904 5( 5) F-x(3)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K 16: 25.0203 5( 5) R-x-R-x(2)-Y-x-T-x-S-N 17: 24.5203 9( 5) R-x(0,1)-R-x(2)-Y-x-T-x-S-N 18: 24.0203 5( 5) V-K-x(0,1)-V-x-K-x-Q-x(3,4)-K 19: 24.0203 7( 5) V-x(0,1)-K-V-x-K-x-Q-x(3,4)-K 20: 24.0203 5( 5) K-x(1,2)-V-K-x(0,1)-V-x-K-x-Q Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 106.0084 5( 5) Q-R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL] B 2: 104.4796 5( 5) R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS] C 3: 103.5622 5( 5) R-[KR]-R-x-[PS]-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] D 4: 100.2962 5( 5) T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] E 5: 99.8140 9( 5) R-x(0,1)-R-x-[PS]-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] F 6: 66.0147 5( 5) R-I-x-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q G 7: 61.8447 5( 5) I-x-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q H 8: 61.3447 8( 5) I-x(0,1)-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q I 9: 57.6746 5( 5) R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q J 10: 53.5046 5( 5) A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q K 11: 53.1991 5( 5) R-I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] L 12: 49.0291 5( 5) I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] M 13: 45.6508 5( 5) F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-x(0,1)-K-x-Q N 14: 44.8590 5( 5) R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] O 15: 41.4807 5( 5) L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-x(0,1)-K-x-Q P 16: 40.6890 5( 5) A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] Q 17: 30.8741 5( 5) V-x-K-V-[LV]-K-x-Q-x(3,4)-K-x(1,3)-K R 18: 27.6904 5( 5) L-x(2)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K S 19: 27.6904 5( 5) F-x(3)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K T 20: 27.2040 5( 5) Q-R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y Best patterns with alignements: fitness hits(seqs) Pattern A 1: 106.0084 5( 5) Q-R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL] Occurences: 5(5) RL34_AEDAL : 2- 50: v QRLTlRrRls-YNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekL sgikp RL34_AEDAL : 2- 50: v QRLTlR-RrlsYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekL sgikp RL34_PEA : 3- 51: mv QRLTyRrRhs-YATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrI qgiph RL34_PEA : 3- 51: mv QRLTyR-RrhsYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrI qgiph RL34_RAT : 2- 50: v QRLTyRrRls-YNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpG rlrgv RL34_RAT : 2- 50: v QRLTyR-RrlsYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpG rlrgv RL34_TOBAC : 3- 51: mv QRLTyRkRhs-YATkSNqhRVVKTPGGkLiyqsTKKrasgPKCPvTgkrI qgiph YIF2_YEAST : 3- 51: ma QRVTfRrRnp-YNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaL qgist YIF2_YEAST : 3- 51: ma QRVTfR-RrnpYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaL qgist B 2: 104.4796 5( 5) R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS] Occurences: 5(5) RL34_AEDAL : 3- 51: vq RLTlRrRls-YNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLS gikps RL34_AEDAL : 3- 51: vq RLTlR-RrlsYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLS gikps RL34_PEA : 4- 52: mvq RLTyRrRhs-YATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQ giphl RL34_PEA : 4- 52: mvq RLTyR-RrhsYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQ giphl RL34_RAT : 3- 51: vq RLTyRrRls-YNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGR lrgvv RL34_RAT : 3- 51: vq RLTyR-RrlsYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGR lrgvv RL34_TOBAC : 4- 52: mvq RLTyRkRhs-YATkSNqhRVVKTPGGkLiyqsTKKrasgPKCPvTgkrIQ giphl YIF2_YEAST : 4- 52: maq RVTfRrRnp-YNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQ gistl YIF2_YEAST : 4- 52: maq RVTfR-RrnpYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQ gistl C 3: 103.5622 5( 5) R-[KR]-R-x-[PS]-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] Occurences: 5(5) RL34_AEDAL : 7- 52: qrltl RRRlSYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLSG ikpsr RL34_PEA : 8- 53: qrlty RRRhSYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQG iphlr RL34_RAT : 7- 52: qrlty RRRlSYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGRL rgvva RL34_TOBAC : 8- 53: qrlty RKRhSYATkSNqhRVVKTPGGkLiyqsTKKrasgPKCPvTgkrIQG iphlr YIF2_YEAST : 8- 53: qrvtf RRRnPYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQG istlr D 4: 100.2962 5( 5) T-x-R-x(0,1)-R-x(2,3)-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] Occurences: 5(5) RL34_AEDAL : 5- 52: vqrl TlRrRls-YNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLSG ikpsr RL34_AEDAL : 5- 52: vqrl TlR-RrlsYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLSG ikpsr RL34_PEA : 6- 53: mvqrl TyRrRhs-YATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQG iphlr RL34_PEA : 6- 53: mvqrl TyR-RrhsYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQG iphlr RL34_RAT : 5- 52: vqrl TyRrRls-YNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGRL rgvva RL34_RAT : 5- 52: vqrl TyR-RrlsYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGRL rgvva RL34_TOBAC : 6- 53: mvqrl TyRkRhs-YATkSNqhRVVKTPGGkLiyqsTKKrasgPKCPvTgkrIQG iphlr YIF2_YEAST : 6- 53: maqrv TfRrRnp-YNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQG istlr YIF2_YEAST : 6- 53: maqrv TfR-RrnpYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQG istlr E 5: 99.8140 9( 5) R-x(0,1)-R-x-[PS]-Y-[AN]-T-x-S-N-x(2)-[KR]-[LV]-[SV]-[KR]-T-P-G-[GN]-x-[IL]-x(4)-[TV]-K-K-x(4)-P-K-[CS]-[AGP]-x-[CGT]-x(3)-[GIL]-[QRS]-[GL] Occurences: 9(5) RL34_AEDAL : 7- 52: qrltl RrRlSYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLSG ikpsr RL34_AEDAL : 8- 52: rltlr R-RlSYNTkSNkrRVVRTPGGrLvylyVKKqrtvPKCGqCkekLSG ikpsr RL34_PEA : 8- 53: qrlty RrRhSYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQG iphlr RL34_PEA : 9- 53: rltyr R-RhSYATkSNqhRVVKTPGGkLvyqtTKKrasgPKCPvTgkrIQG iphlr RL34_RAT : 7- 52: qrlty RrRlSYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGRL rgvva RL34_RAT : 8- 52: rltyr R-RlSYNTaSNktRLSRTPGNrIvylyTKKvgkaPKSAcGvlpGRL rgvva RL34_TOBAC : 8- 53: qrlty RkRhSYATkSNqhRVVKTPGGkLiyqsTKKrasgPKCPvTgkrIQG iphlr YIF2_YEAST : 8- 53: qrvtf RrRnPYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQG istlr YIF2_YEAST : 9- 53: rvtfr R-RnPYNTrSNkiKVVKTPGGiLraqhVKKlatrPKCGdCgsaLQG istlr F 6: 66.0147 5( 5) R-I-x-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q Occurences: 5(5) RL34_AEDAL : 87- 106: rclre RIiRAFLIDEQKVVk-VLKaQ qlgkp RL34_PEA : 90- 110: gavre RIiRAFLVEEQKIVkkVLKiQ ktkek RL34_RAT : 89- 109: qvcpd RIkRAFLIEEQKIVvkVLKaQ aqsqk RL34_TOBAC : 90- 110: savre RIiRAFLVEEQKIVkkVLKiQ kakek YIF2_YEAST : 88- 108: ncvke RIvRAFLIEEQKIVkkVVKeQ teaak G 7: 61.8447 5( 5) I-x-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q Occurences: 5(5) RL34_AEDAL : 88- 106: clrer IiRAFLIDEQKVVk-VLKaQ qlgkp RL34_PEA : 91- 110: avrer IiRAFLVEEQKIVkkVLKiQ ktkek RL34_RAT : 90- 109: vcpdr IkRAFLIEEQKIVvkVLKaQ aqsqk RL34_TOBAC : 91- 110: avrer IiRAFLVEEQKIVkkVLKiQ kakek YIF2_YEAST : 89- 108: cvker IvRAFLIEEQKIVkkVVKeQ teaak H 8: 61.3447 8( 5) I-x(0,1)-R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q Occurences: 8(5) RL34_AEDAL : 88- 106: clrer IiRAFLIDEQKVVk-VLKaQ qlgkp RL34_AEDAL : 89- 106: lreri I-RAFLIDEQKVVk-VLKaQ qlgkp RL34_PEA : 91- 110: avrer IiRAFLVEEQKIVkkVLKiQ ktkek RL34_PEA : 92- 110: vreri I-RAFLVEEQKIVkkVLKiQ ktkek RL34_RAT : 90- 109: vcpdr IkRAFLIEEQKIVvkVLKaQ aqsqk RL34_TOBAC : 91- 110: avrer IiRAFLVEEQKIVkkVLKiQ kakek RL34_TOBAC : 92- 110: vreri I-RAFLVEEQKIVkkVLKiQ kakek YIF2_YEAST : 89- 108: cvker IvRAFLIEEQKIVkkVVKeQ teaak I 9: 57.6746 5( 5) R-A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q Occurences: 5(5) RL34_AEDAL : 90- 106: rerii RAFLIDEQKVVk-VLKaQ qlgkp RL34_PEA : 93- 110: rerii RAFLVEEQKIVkkVLKiQ ktkek RL34_RAT : 92- 109: pdrik RAFLIEEQKIVvkVLKaQ aqsqk RL34_TOBAC : 93- 110: rerii RAFLVEEQKIVkkVLKiQ kakek YIF2_YEAST : 91- 108: keriv RAFLIEEQKIVkkVVKeQ teaak J 10: 53.5046 5( 5) A-F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-[LV]-K-x-Q Occurences: 5(5) RL34_AEDAL : 91- 106: eriir AFLIDEQKVVk-VLKaQ qlgkp RL34_PEA : 94- 110: eriir AFLVEEQKIVkkVLKiQ ktkek RL34_RAT : 93- 109: drikr AFLIEEQKIVvkVLKaQ aqsqk RL34_TOBAC : 94- 110: eriir AFLVEEQKIVkkVLKiQ kakek YIF2_YEAST : 92- 108: erivr AFLIEEQKIVkkVVKeQ teaak K 11: 53.1991 5( 5) R-I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] Occurences: 5(5) RL34_AEDAL : 87- 109: rclre RIiRAFLidE-QKVVkvLkaqQlG kpvsk RL34_PEA : 90- 112: gavre RIiRAFLveE-QKIVkkVlkiQkT kekqa RL34_PEA : 90- 112: gavre RIiRAFLv-EeQKIVkkVlkiQkT kekqa RL34_RAT : 89- 111: qvcpd RIkRAFLieE-QKIVvkVlkaQaQ sqkak RL34_RAT : 89- 111: qvcpd RIkRAFLi-EeQKIVvkVlkaQaQ sqkak RL34_TOBAC : 90- 112: savre RIiRAFLveE-QKIVkkVlkiQkA kekla RL34_TOBAC : 90- 112: savre RIiRAFLv-EeQKIVkkVlkiQkA kekla YIF2_YEAST : 88- 110: ncvke RIvRAFLieE-QKIVkkVvkeQtE aakks YIF2_YEAST : 88- 110: ncvke RIvRAFLi-EeQKIVkkVvkeQtE aakks L 12: 49.0291 5( 5) I-x-R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] Occurences: 5(5) RL34_AEDAL : 88- 109: clrer IiRAFLidE-QKVVkvLkaqQlG kpvsk RL34_PEA : 91- 112: avrer IiRAFLveE-QKIVkkVlkiQkT kekqa RL34_PEA : 91- 112: avrer IiRAFLv-EeQKIVkkVlkiQkT kekqa RL34_RAT : 90- 111: vcpdr IkRAFLieE-QKIVvkVlkaQaQ sqkak RL34_RAT : 90- 111: vcpdr IkRAFLi-EeQKIVvkVlkaQaQ sqkak RL34_TOBAC : 91- 112: avrer IiRAFLveE-QKIVkkVlkiQkA kekla RL34_TOBAC : 91- 112: avrer IiRAFLv-EeQKIVkkVlkiQkA kekla YIF2_YEAST : 89- 110: cvker IvRAFLieE-QKIVkkVvkeQtE aakks YIF2_YEAST : 89- 110: cvker IvRAFLi-EeQKIVkkVvkeQtE aakks M 13: 45.6508 5( 5) F-L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-x(0,1)-K-x-Q Occurences: 5(5) RL34_AEDAL : 92- 106: riira FLIDEQKVVk-VlKaQ qlgkp RL34_PEA : 95- 110: riira FLVEEQKIVkkVlKiQ ktkek RL34_RAT : 94- 109: rikra FLIEEQKIVvkVlKaQ aqsqk RL34_TOBAC : 95- 110: riira FLVEEQKIVkkVlKiQ kakek YIF2_YEAST : 93- 108: rivra FLIEEQKIVkkVvKeQ teaak N 14: 44.8590 5( 5) R-A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] Occurences: 5(5) RL34_AEDAL : 90- 109: rerii RAFLidE-QKVVkvLkaqQlG kpvsk RL34_PEA : 93- 112: rerii RAFLveE-QKIVkkVlkiQkT kekqa RL34_PEA : 93- 112: rerii RAFLv-EeQKIVkkVlkiQkT kekqa RL34_RAT : 92- 111: pdrik RAFLieE-QKIVvkVlkaQaQ sqkak RL34_RAT : 92- 111: pdrik RAFLi-EeQKIVvkVlkaQaQ sqkak RL34_TOBAC : 93- 112: rerii RAFLveE-QKIVkkVlkiQkA kekla RL34_TOBAC : 93- 112: rerii RAFLv-EeQKIVkkVlkiQkA kekla YIF2_YEAST : 91- 110: keriv RAFLieE-QKIVkkVvkeQtE aakks YIF2_YEAST : 91- 110: keriv RAFLi-EeQKIVkkVvkeQtE aakks O 15: 41.4807 5( 5) L-[IV]-[DE]-E-Q-K-[IV]-V-x(0,2)-V-x(0,1)-K-x-Q Occurences: 5(5) RL34_AEDAL : 93- 106: iiraf LIDEQKVVk-VlKaQ qlgkp RL34_PEA : 96- 110: iiraf LVEEQKIVkkVlKiQ ktkek RL34_RAT : 95- 109: ikraf LIEEQKIVvkVlKaQ aqsqk RL34_TOBAC : 96- 110: iiraf LVEEQKIVkkVlKiQ kakek YIF2_YEAST : 94- 108: ivraf LIEEQKIVkkVvKeQ teaak P 16: 40.6890 5( 5) A-F-L-x(1,2)-E-x(0,1)-Q-K-[IV]-V-x(2)-[LV]-x(3)-Q-x-[AEGQT] Occurences: 5(5) RL34_AEDAL : 91- 109: eriir AFLidE-QKVVkvLkaqQlG kpvsk RL34_PEA : 94- 112: eriir AFLveE-QKIVkkVlkiQkT kekqa RL34_PEA : 94- 112: eriir AFLv-EeQKIVkkVlkiQkT kekqa RL34_RAT : 93- 111: drikr AFLieE-QKIVvkVlkaQaQ sqkak RL34_RAT : 93- 111: drikr AFLi-EeQKIVvkVlkaQaQ sqkak RL34_TOBAC : 94- 112: eriir AFLveE-QKIVkkVlkiQkA kekla RL34_TOBAC : 94- 112: eriir AFLv-EeQKIVkkVlkiQkA kekla YIF2_YEAST : 92- 110: erivr AFLieE-QKIVkkVvkeQtE aakks YIF2_YEAST : 92- 110: erivr AFLi-EeQKIVkkVvkeQtE aakks Q 17: 30.8741 5( 5) V-x-K-V-[LV]-K-x-Q-x(3,4)-K-x(1,3)-K Occurences: 5(5) RL34_AEDAL : 99- 114: ideqk VvKVLKaQqlg-KpvsK ppkiq RL34_PEA : 103- 119: eeqki VkKVLKiQktkeKqaaK n RL34_RAT : 102- 116: eeqki VvKVLKaQaqsqKa--K RL34_TOBAC : 103- 119: eeqki VkKVLKiQkakeKlaaK s YIF2_YEAST : 101- 117: eeqki VkKVVKeQteaaKkseK kskk R 18: 27.6904 5( 5) L-x(2)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K Occurences: 5(5) RL34_AEDAL : 93- 104: iiraf LidEQKvVk-VlK aqqlg RL34_PEA : 96- 108: iiraf LveEQKiVkkVlK iqktk RL34_RAT : 95- 104: ikraf LieEQKiV--V-K vlkaq RL34_RAT : 95- 107: ikraf LieEQKiVvkVlK aqaqs RL34_TOBAC : 96- 108: iiraf LveEQKiVkkVlK iqkak YIF2_YEAST : 94- 106: ivraf LieEQKiVkkVvK eqtea S 19: 27.6904 5( 5) F-x(3)-E-Q-K-x-V-x(0,2)-V-x(0,1)-K Occurences: 5(5) RL34_AEDAL : 92- 104: riira FlidEQKvVk-VlK aqqlg RL34_PEA : 95- 108: riira FlveEQKiVkkVlK iqktk RL34_RAT : 94- 104: rikra FlieEQKiV--V-K vlkaq RL34_RAT : 94- 107: rikra FlieEQKiVvkVlK aqaqs RL34_TOBAC : 95- 108: riira FlveEQKiVkkVlK iqkak YIF2_YEAST : 93- 106: rivra FlieEQKiVkkVvK eqtea T 20: 27.2040 5( 5) Q-R-[LV]-T-x-R-x(0,1)-R-x(2,3)-Y Occurences: 5(5) RL34_AEDAL : 2- 12: v QRLTlRrRls-Y ntksn RL34_AEDAL : 2- 12: v QRLTlR-RrlsY ntksn RL34_PEA : 3- 13: mv QRLTyRrRhs-Y atksn RL34_PEA : 3- 13: mv QRLTyR-RrhsY atksn RL34_RAT : 2- 12: v QRLTyRrRls-Y ntasn RL34_RAT : 2- 12: v QRLTyR-RrlsY ntasn RL34_TOBAC : 3- 13: mv QRLTyRkRhs-Y atksn YIF2_YEAST : 3- 13: ma QRVTfRrRnp-Y ntrsn YIF2_YEAST : 3- 13: ma QRVTfR-RrnpY ntrsn Number of patterns evaluated by Pratt:2421 Total running time: 0 seconds