------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file RIBOSOMAL_L34 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L34.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL34_BACST 44 RL34_BACSU 44 RL34_BORBU 51 RL34_BUCAP 47 RL34_COXBU 44 RL34_ECOLI 46 RL34_HAEIN 44 RL34_MICLU 45 RL34_MYCCA 44 RL34_MYCLE 47 RL34_PROMI 47 RL34_PSEAE 36 RL34_PSEPU 44 RL34_STRBI 45 RL34_STRCO 45 RL34_THETH 22 Pratt run started at Thu Feb 6 21:05:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.5203 16( 16) M-x(0,1)-K-x(0,2)-R-T-x-Q-P 2: 20.8503 16( 16) G-F-R-x-R-M 3: 20.8503 16( 16) K-R-T-x-Q-P 4: 16.6802 16( 16) F-R-x-R-M 5: 16.6802 16( 16) R-T-x-Q-P 6: 15.6802 22( 16) R-x-R-x(4,5)-G-x(0,1)-R 7: 12.5102 16( 16) R-x-R-M 8: 12.5102 16( 16) T-x-Q-P 9: 11.5102 42( 16) R-x(4,5)-G-x(0,1)-R 10: 11.5102 27( 16) R-x(3,4)-G-x(1,2)-R 11: 11.5102 25( 16) R-x(1,2)-R-x(4,5)-G 12: 11.0102 32( 16) K-x(0,2)-G-x(0,1)-R 13: 11.0102 47( 16) R-x(0,1)-R-x(1,3)-K 14: 10.5102 59( 16) R-x(1,3)-K-x(0,2)-G 15: 8.3401 17( 16) R-M 16: 8.3401 29( 16) K-R 17: 8.3401 39( 16) R-R 18: 8.3401 16( 16) Q-P 19: 7.8401 30( 16) N-x(0,1)-R 20: 7.3401 41( 16) A-x(0,2)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 63.0906 16( 16) M-x(0,1)-K-x(0,2)-R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M B 2: 60.4206 16( 16) K-R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M C 3: 56.2505 16( 16) R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M D 4: 52.0805 16( 16) T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M E 5: 47.9104 16( 16) Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M F 6: 20.8503 16( 16) G-F-R-x-R-M G 7: 18.5691 21( 16) R-x-R-x(4,5)-G-x(0,1)-R-x(2)-[ILM] H 8: 16.6802 16( 16) F-R-x-R-M I 9: 14.7294 17( 16) R-x(3,4)-G-x(1,2)-R-x-[RS] J 10: 14.5771 30( 16) K-x(0,2)-G-x(0,1)-R-x(2)-[LM] K 11: 14.3991 41( 16) R-x(4,5)-G-x(0,1)-R-x(2)-[ILM] L 12: 14.2832 34( 16) R-x(0,1)-R-x(1,3)-K-[GN] M 13: 13.7494 24( 16) R-x(1,2)-R-x(4,5)-G-x(2)-[AILV] N 14: 12.5102 16( 16) R-x-R-M O 15: 11.0102 16( 16) M-x(0,1)-K-x(0,2)-R P 16: 10.5102 59( 16) R-x(1,3)-K-x(0,2)-G Q 17: 8.3401 17( 16) R-M R 18: 8.3401 29( 16) K-R S 19: 8.3401 39( 16) R-R T 20: 7.8401 30( 16) N-x(0,1)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 63.0906 16( 16) M-x(0,1)-K-x(0,2)-R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 1- 22: M-K--RTyQPNrrKRSKvHGFRaRM stkng RL34_BACSU : 1- 22: M-K--RTfQPNnrKRSKvHGFRsRM sskng RL34_BORBU : 1- 22: M-K--RTyQPSrvKRNRkFGFRaRM ktkgg RL34_BUCAP : 1- 22: M-K--RTfQPSilKRNRsHGFRtRM atkng RL34_COXBU : 1- 22: M-K--RTyQPSkqKRNRtHGFRaRM atkng RL34_ECOLI : 1- 22: M-K--RTfQPSvlKRNRsHGFRaRM atkng RL34_HAEIN : 1- 22: M-K--RTfQPSvlKRSRtHGFRaRM atkng RL34_MICLU : 1- 23: MtK--RTfQPNnrRRARkHGFRaRM rtrag RL34_MYCCA : 1- 22: M-K--RTwQPSklKHARvHGFRaRM atkng RL34_MYCLE : 1- 25: MrKgkRTfQPNnrRRARvHGFRlRM rtrag RL34_PROMI : 1- 22: M-K--RTfQPSvlKRNRnHGFRaRM atkng RL34_PSEAE : 1- 22: M-K--RTfQPStlKRARvHGFRaRM atkng RL34_PSEPU : 1- 22: M-K--RTfQPStiKRARtHGFRaRM atkng RL34_STRBI : 1- 23: MsK--RTfQPNnrRRAKtHGFRlRM rtrag RL34_STRCO : 1- 23: MsK--RTfQPNnrRRAKtHGFRlRM rtrag RL34_THETH : 1- 22: M-K--RTxQPNrrKRNKnHGFRaRM B 2: 60.4206 16( 16) K-R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 2- 22: m KRTyQPNrrKRSKvHGFRaRM stkng RL34_BACSU : 2- 22: m KRTfQPNnrKRSKvHGFRsRM sskng RL34_BORBU : 2- 22: m KRTyQPSrvKRNRkFGFRaRM ktkgg RL34_BUCAP : 2- 22: m KRTfQPSilKRNRsHGFRtRM atkng RL34_COXBU : 2- 22: m KRTyQPSkqKRNRtHGFRaRM atkng RL34_ECOLI : 2- 22: m KRTfQPSvlKRNRsHGFRaRM atkng RL34_HAEIN : 2- 22: m KRTfQPSvlKRSRtHGFRaRM atkng RL34_MICLU : 3- 23: mt KRTfQPNnrRRARkHGFRaRM rtrag RL34_MYCCA : 2- 22: m KRTwQPSklKHARvHGFRaRM atkng RL34_MYCLE : 5- 25: mrkg KRTfQPNnrRRARvHGFRlRM rtrag RL34_PROMI : 2- 22: m KRTfQPSvlKRNRnHGFRaRM atkng RL34_PSEAE : 2- 22: m KRTfQPStlKRARvHGFRaRM atkng RL34_PSEPU : 2- 22: m KRTfQPStiKRARtHGFRaRM atkng RL34_STRBI : 3- 23: ms KRTfQPNnrRRAKtHGFRlRM rtrag RL34_STRCO : 3- 23: ms KRTfQPNnrRRAKtHGFRlRM rtrag RL34_THETH : 2- 22: m KRTxQPNrrKRNKnHGFRaRM C 3: 56.2505 16( 16) R-T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 3- 22: mk RTyQPNrrKRSKvHGFRaRM stkng RL34_BACSU : 3- 22: mk RTfQPNnrKRSKvHGFRsRM sskng RL34_BORBU : 3- 22: mk RTyQPSrvKRNRkFGFRaRM ktkgg RL34_BUCAP : 3- 22: mk RTfQPSilKRNRsHGFRtRM atkng RL34_COXBU : 3- 22: mk RTyQPSkqKRNRtHGFRaRM atkng RL34_ECOLI : 3- 22: mk RTfQPSvlKRNRsHGFRaRM atkng RL34_HAEIN : 3- 22: mk RTfQPSvlKRSRtHGFRaRM atkng RL34_MICLU : 4- 23: mtk RTfQPNnrRRARkHGFRaRM rtrag RL34_MYCCA : 3- 22: mk RTwQPSklKHARvHGFRaRM atkng RL34_MYCLE : 6- 25: mrkgk RTfQPNnrRRARvHGFRlRM rtrag RL34_PROMI : 3- 22: mk RTfQPSvlKRNRnHGFRaRM atkng RL34_PSEAE : 3- 22: mk RTfQPStlKRARvHGFRaRM atkng RL34_PSEPU : 3- 22: mk RTfQPStiKRARtHGFRaRM atkng RL34_STRBI : 4- 23: msk RTfQPNnrRRAKtHGFRlRM rtrag RL34_STRCO : 4- 23: msk RTfQPNnrRRAKtHGFRlRM rtrag RL34_THETH : 3- 22: mk RTxQPNrrKRNKnHGFRaRM D 4: 52.0805 16( 16) T-x-Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 4- 22: mkr TyQPNrrKRSKvHGFRaRM stkng RL34_BACSU : 4- 22: mkr TfQPNnrKRSKvHGFRsRM sskng RL34_BORBU : 4- 22: mkr TyQPSrvKRNRkFGFRaRM ktkgg RL34_BUCAP : 4- 22: mkr TfQPSilKRNRsHGFRtRM atkng RL34_COXBU : 4- 22: mkr TyQPSkqKRNRtHGFRaRM atkng RL34_ECOLI : 4- 22: mkr TfQPSvlKRNRsHGFRaRM atkng RL34_HAEIN : 4- 22: mkr TfQPSvlKRSRtHGFRaRM atkng RL34_MICLU : 5- 23: mtkr TfQPNnrRRARkHGFRaRM rtrag RL34_MYCCA : 4- 22: mkr TwQPSklKHARvHGFRaRM atkng RL34_MYCLE : 7- 25: rkgkr TfQPNnrRRARvHGFRlRM rtrag RL34_PROMI : 4- 22: mkr TfQPSvlKRNRnHGFRaRM atkng RL34_PSEAE : 4- 22: mkr TfQPStlKRARvHGFRaRM atkng RL34_PSEPU : 4- 22: mkr TfQPStiKRARtHGFRaRM atkng RL34_STRBI : 5- 23: mskr TfQPNnrRRAKtHGFRlRM rtrag RL34_STRCO : 5- 23: mskr TfQPNnrRRAKtHGFRlRM rtrag RL34_THETH : 4- 22: mkr TxQPNrrKRNKnHGFRaRM E 5: 47.9104 16( 16) Q-P-[NS]-x(2)-[KR]-[HR]-[ANS]-[KR]-x-[FH]-G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 6- 22: mkrty QPNrrKRSKvHGFRaRM stkng RL34_BACSU : 6- 22: mkrtf QPNnrKRSKvHGFRsRM sskng RL34_BORBU : 6- 22: mkrty QPSrvKRNRkFGFRaRM ktkgg RL34_BUCAP : 6- 22: mkrtf QPSilKRNRsHGFRtRM atkng RL34_COXBU : 6- 22: mkrty QPSkqKRNRtHGFRaRM atkng RL34_ECOLI : 6- 22: mkrtf QPSvlKRNRsHGFRaRM atkng RL34_HAEIN : 6- 22: mkrtf QPSvlKRSRtHGFRaRM atkng RL34_MICLU : 7- 23: tkrtf QPNnrRRARkHGFRaRM rtrag RL34_MYCCA : 6- 22: mkrtw QPSklKHARvHGFRaRM atkng RL34_MYCLE : 9- 25: gkrtf QPNnrRRARvHGFRlRM rtrag RL34_PROMI : 6- 22: mkrtf QPSvlKRNRnHGFRaRM atkng RL34_PSEAE : 6- 22: mkrtf QPStlKRARvHGFRaRM atkng RL34_PSEPU : 6- 22: mkrtf QPStiKRARtHGFRaRM atkng RL34_STRBI : 7- 23: skrtf QPNnrRRAKtHGFRlRM rtrag RL34_STRCO : 7- 23: skrtf QPNnrRRAKtHGFRlRM rtrag RL34_THETH : 6- 22: mkrtx QPNrrKRNKnHGFRaRM F 6: 20.8503 16( 16) G-F-R-x-R-M Occurences: 16(16) RL34_BACST : 17- 22: rskvh GFRaRM stkng RL34_BACSU : 17- 22: rskvh GFRsRM sskng RL34_BORBU : 17- 22: rnrkf GFRaRM ktkgg RL34_BUCAP : 17- 22: rnrsh GFRtRM atkng RL34_COXBU : 17- 22: rnrth GFRaRM atkng RL34_ECOLI : 17- 22: rnrsh GFRaRM atkng RL34_HAEIN : 17- 22: rsrth GFRaRM atkng RL34_MICLU : 18- 23: rarkh GFRaRM rtrag RL34_MYCCA : 17- 22: harvh GFRaRM atkng RL34_MYCLE : 20- 25: rarvh GFRlRM rtrag RL34_PROMI : 17- 22: rnrnh GFRaRM atkng RL34_PSEAE : 17- 22: rarvh GFRaRM atkng RL34_PSEPU : 17- 22: rarth GFRaRM atkng RL34_STRBI : 18- 23: rakth GFRlRM rtrag RL34_STRCO : 18- 23: rakth GFRlRM rtrag RL34_THETH : 17- 22: rnknh GFRaRM G 7: 18.5691 21( 16) R-x-R-x(4,5)-G-x(0,1)-R-x(2)-[ILM] Occurences: 21(16) RL34_BACST : 10- 22: yqpnr RkRskvh-GfRarM stkng RL34_BACST : 19- 31: kvhgf RaRmstknG-RkvL arrrr RL34_BACSU : 10- 22: fqpnn RkRskvh-GfRsrM sskng RL34_BACSU : 19- 31: kvhgf RsRmssknG-RlvL arrrr RL34_BORBU : 19- 31: rkfgf RaRmktkgG-RliL srrra RL34_BORBU : 19- 31: rkfgf RaRmktk-GgRliL srrra RL34_BUCAP : 19- 31: rshgf RtRmatknG-RyiL srrra RL34_COXBU : 19- 31: rthgf RaRmatknG-RqvL nrrra RL34_ECOLI : 19- 31: rshgf RaRmatknG-RqvL arrra RL34_HAEIN : 19- 31: rthgf RaRmatknG-RqvL arrra RL34_MICLU : 11- 23: fqpnn RrRarkh-GfRarM rtrag RL34_MICLU : 20- 32: rkhgf RaRmrtraG-RaiL sarrg RL34_MYCCA : 19- 31: rvhgf RaRmatknG-RkvI karra RL34_MYCLE : 13- 25: fqpnn RrRarvh-GfRlrM rtrag RL34_PROMI : 19- 31: rnhgf RaRmatknG-RqvL arrra RL34_PSEAE : 19- 31: rvhgf RaRmatknG-RqvL srrra RL34_PSEPU : 19- 31: rthgf RaRmatknG-RavL srrra RL34_STRBI : 11- 23: fqpnn RrRakth-GfRlrM rtrag RL34_STRBI : 20- 32: kthgf RlRmrtraG-RaiL anrra RL34_STRCO : 11- 23: fqpnn RrRakth-GfRlrM rtrag RL34_STRCO : 20- 32: kthgf RlRmrtraG-RaiL atrrs RL34_THETH : 10- 22: xqpnr RkRnknh-GfRarM H 8: 16.6802 16( 16) F-R-x-R-M Occurences: 16(16) RL34_BACST : 18- 22: skvhg FRaRM stkng RL34_BACSU : 18- 22: skvhg FRsRM sskng RL34_BORBU : 18- 22: nrkfg FRaRM ktkgg RL34_BUCAP : 18- 22: nrshg FRtRM atkng RL34_COXBU : 18- 22: nrthg FRaRM atkng RL34_ECOLI : 18- 22: nrshg FRaRM atkng RL34_HAEIN : 18- 22: srthg FRaRM atkng RL34_MICLU : 19- 23: arkhg FRaRM rtrag RL34_MYCCA : 18- 22: arvhg FRaRM atkng RL34_MYCLE : 21- 25: arvhg FRlRM rtrag RL34_PROMI : 18- 22: nrnhg FRaRM atkng RL34_PSEAE : 18- 22: arvhg FRaRM atkng RL34_PSEPU : 18- 22: arthg FRaRM atkng RL34_STRBI : 19- 23: akthg FRlRM rtrag RL34_STRCO : 19- 23: akthg FRlRM rtrag RL34_THETH : 18- 22: nknhg FRaRM I 9: 14.7294 17( 16) R-x(3,4)-G-x(1,2)-R-x-[RS] Occurences: 17(16) RL34_BACST : 12- 21: pnrrk RskvhGf-RaR mstkn RL34_BACSU : 12- 21: pnnrk RskvhGf-RsR msskn RL34_BORBU : 12- 21: psrvk RnrkfGf-RaR mktkg RL34_BUCAP : 12- 21: psilk RnrshGf-RtR matkn RL34_COXBU : 12- 21: pskqk RnrthGf-RaR matkn RL34_ECOLI : 12- 21: psvlk RnrshGf-RaR matkn RL34_HAEIN : 12- 21: psvlk RsrthGf-RaR matkn RL34_MICLU : 13- 22: pnnrr RarkhGf-RaR mrtra RL34_MYCCA : 34- 43: kvika Rrak-GrvRlS a RL34_MYCLE : 15- 24: pnnrr RarvhGf-RlR mrtra RL34_PROMI : 12- 21: psvlk RnrnhGf-RaR matkn RL34_PSEAE : 12- 21: pstlk RarvhGf-RaR matkn RL34_PSEPU : 12- 21: pstik RarthGf-RaR matkn RL34_STRBI : 13- 22: pnnrr RakthGf-RlR mrtra RL34_STRCO : 13- 22: pnnrr RakthGf-RlR mrtra RL34_STRCO : 35- 44: ailat Rrsk-GraRlS a RL34_THETH : 12- 21: pnrrk RnknhGf-RaR m J 10: 14.5771 30( 16) K-x(0,2)-G-x(0,1)-R-x(2)-[LM] Occurences: 30(16) RL34_BACST : 14- 22: rrkrs KvhGfRarM stkng RL34_BACST : 25- 31: armst Kn-G-RkvL arrrr RL34_BACST : 37- 42: arrrr K--G-RkvL sa RL34_BACSU : 14- 22: nrkrs KvhGfRsrM sskng RL34_BACSU : 25- 31: srmss Kn-G-RlvL arrrr RL34_BACSU : 37- 42: arrrr K--G-RkvL sa RL34_BORBU : 15- 22: vkrnr Kf-GfRarM ktkgg RL34_BORBU : 23- 31: frarm KtkGgRliL srrra RL34_BORBU : 25- 31: armkt Kg-G-RliL srrra RL34_BORBU : 25- 31: armkt K--GgRliL srrra RL34_BORBU : 37- 42: srrra K--G-RmkL tvsde RL34_BUCAP : 25- 31: trmat Kn-G-RyiL srrra RL34_COXBU : 25- 31: armat Kn-G-RqvL nrrra RL34_COXBU : 37- 42: nrrra K--G-RkrL tv RL34_ECOLI : 25- 31: armat Kn-G-RqvL arrra RL34_ECOLI : 37- 42: arrra K--G-RarL tvsk RL34_HAEIN : 25- 31: armat Kn-G-RqvL arrra RL34_HAEIN : 37- 42: arrra K--G-RksL sa RL34_MICLU : 16- 23: rrrar Kh-GfRarM rtrag RL34_MYCCA : 37- 42: karra K--G-RvrL sa RL34_MYCLE : 40- 45: sdrrr K--G-RrtL ta RL34_PROMI : 25- 31: armat Kn-G-RqvL arrra RL34_PROMI : 37- 42: arrra K--G-RarL tvssk RL34_PSEAE : 25- 31: armat Kn-G-RqvL srrra RL34_PSEPU : 25- 31: armat Kn-G-RavL srrra RL34_PSEPU : 37- 42: srrra K--G-RkrL ai RL34_STRBI : 15- 23: nrrra KthGfRlrM rtrag RL34_STRBI : 38- 43: anrra K--G-RasL sa RL34_STRCO : 15- 23: nrrra KthGfRlrM rtrag RL34_STRCO : 38- 43: atrrs K--G-RarL sa RL34_THETH : 14- 22: rrkrn KnhGfRarM K 11: 14.3991 41( 16) R-x(4,5)-G-x(0,1)-R-x(2)-[ILM] Occurences: 41(16) RL34_BACST : 12- 22: pnrrk Rskvh-GfRarM stkng RL34_BACST : 21- 31: hgfra RmstknG-RkvL arrrr RL34_BACST : 33- 42: rkvla Rrrrk-G-RkvL sa RL34_BACSU : 12- 22: pnnrk Rskvh-GfRsrM sskng RL34_BACSU : 21- 31: hgfrs RmssknG-RlvL arrrr RL34_BACSU : 33- 42: rlvla Rrrrk-G-RkvL sa RL34_BORBU : 12- 22: psrvk Rnrkf-GfRarM ktkgg RL34_BORBU : 21- 31: fgfra RmktkgG-RliL srrra RL34_BORBU : 21- 31: fgfra Rmktk-GgRliL srrra RL34_BORBU : 33- 42: rlils Rrrak-G-RmkL tvsde RL34_BUCAP : 12- 22: psilk Rnrsh-GfRtrM atkng RL34_BUCAP : 21- 31: hgfrt RmatknG-RyiL srrra RL34_COXBU : 12- 22: pskqk Rnrth-GfRarM atkng RL34_COXBU : 21- 31: hgfra RmatknG-RqvL nrrra RL34_COXBU : 33- 42: rqvln Rrrak-G-RkrL tv RL34_ECOLI : 12- 22: psvlk Rnrsh-GfRarM atkng RL34_ECOLI : 21- 31: hgfra RmatknG-RqvL arrra RL34_ECOLI : 33- 42: rqvla Rrrak-G-RarL tvsk RL34_HAEIN : 12- 22: psvlk Rsrth-GfRarM atkng RL34_HAEIN : 21- 31: hgfra RmatknG-RqvL arrra RL34_HAEIN : 33- 42: rqvla Rrrak-G-RksL sa RL34_MICLU : 12- 23: qpnnr RrarkhGfRarM rtrag RL34_MICLU : 13- 23: pnnrr Rarkh-GfRarM rtrag RL34_MICLU : 22- 32: hgfra RmrtraG-RaiL sarrg RL34_MYCCA : 21- 31: hgfra RmatknG-RkvI karra RL34_MYCLE : 14- 25: qpnnr RrarvhGfRlrM rtrag RL34_MYCLE : 15- 25: pnnrr Rarvh-GfRlrM rtrag RL34_PROMI : 12- 22: psvlk Rnrnh-GfRarM atkng RL34_PROMI : 21- 31: hgfra RmatknG-RqvL arrra RL34_PROMI : 33- 42: rqvla Rrrak-G-RarL tvssk RL34_PSEAE : 12- 22: pstlk Rarvh-GfRarM atkng RL34_PSEAE : 21- 31: hgfra RmatknG-RqvL srrra RL34_PSEPU : 12- 22: pstik Rarth-GfRarM atkng RL34_PSEPU : 21- 31: hgfra RmatknG-RavL srrra RL34_PSEPU : 33- 42: ravls Rrrak-G-RkrL ai RL34_STRBI : 12- 23: qpnnr RrakthGfRlrM rtrag RL34_STRBI : 13- 23: pnnrr Rakth-GfRlrM rtrag RL34_STRBI : 22- 32: hgfrl RmrtraG-RaiL anrra RL34_STRCO : 12- 23: qpnnr RrakthGfRlrM rtrag RL34_STRCO : 13- 23: pnnrr Rakth-GfRlrM rtrag RL34_STRCO : 22- 32: hgfrl RmrtraG-RaiL atrrs RL34_THETH : 12- 22: pnrrk Rnknh-GfRarM L 12: 14.2832 34( 16) R-x(0,1)-R-x(1,3)-K-[GN] Occurences: 34(16) RL34_BACST : 19- 26: kvhgf RaRmstKN grkvl RL34_BACST : 33- 38: rkvla RrRr--KG rkvls RL34_BACST : 33- 38: rkvla R-Rrr-KG rkvls RL34_BACST : 34- 38: kvlar R-Rr--KG rkvls RL34_BACSU : 19- 26: kvhgf RsRmssKN grlvl RL34_BACSU : 33- 38: rlvla RrRr--KG rkvls RL34_BACSU : 33- 38: rlvla R-Rrr-KG rkvls RL34_BACSU : 34- 38: lvlar R-Rr--KG rkvls RL34_BORBU : 19- 26: rkfgf RaRmktKG grlil RL34_BORBU : 33- 38: rlils RrRa--KG rmklt RL34_BORBU : 33- 38: rlils R-Rra-KG rmklt RL34_BORBU : 34- 38: lilsr R-Ra--KG rmklt RL34_BUCAP : 19- 26: rshgf RtRmatKN gryil RL34_COXBU : 19- 26: rthgf RaRmatKN grqvl RL34_COXBU : 33- 38: rqvln RrRa--KG rkrlt RL34_COXBU : 33- 38: rqvln R-Rra-KG rkrlt RL34_COXBU : 34- 38: qvlnr R-Ra--KG rkrlt RL34_ECOLI : 19- 26: rshgf RaRmatKN grqvl RL34_ECOLI : 33- 38: rqvla RrRa--KG rarlt RL34_ECOLI : 33- 38: rqvla R-Rra-KG rarlt RL34_ECOLI : 34- 38: qvlar R-Ra--KG rarlt RL34_HAEIN : 19- 26: rthgf RaRmatKN grqvl RL34_HAEIN : 33- 38: rqvla RrRa--KG rksls RL34_HAEIN : 33- 38: rqvla R-Rra-KG rksls RL34_HAEIN : 34- 38: qvlar R-Ra--KG rksls RL34_MICLU : 35- 39: ailsa R-Rg--KN raels RL34_MYCCA : 19- 26: rvhgf RaRmatKN grkvi RL34_MYCCA : 34- 38: kvika R-Ra--KG rvrls RL34_MYCLE : 37- 41: sivsd R-Rr--KG rrtlt RL34_PROMI : 19- 26: rnhgf RaRmatKN grqvl RL34_PROMI : 33- 38: rqvla RrRa--KG rarlt RL34_PROMI : 33- 38: rqvla R-Rra-KG rarlt RL34_PROMI : 34- 38: qvlar R-Ra--KG rarlt RL34_PSEAE : 19- 26: rvhgf RaRmatKN grqvl RL34_PSEPU : 19- 26: rthgf RaRmatKN gravl RL34_PSEPU : 33- 38: ravls RrRa--KG rkrla RL34_PSEPU : 33- 38: ravls R-Rra-KG rkrla RL34_PSEPU : 34- 38: avlsr R-Ra--KG rkrla RL34_STRBI : 35- 39: ailan R-Ra--KG rasls RL34_STRCO : 35- 39: ailat R-Rs--KG rarls RL34_THETH : 9- 15: txqpn R-RkrnKN hgfra RL34_THETH : 10- 15: xqpnr RkRn--KN hgfra M 13: 13.7494 24( 16) R-x(1,2)-R-x(4,5)-G-x(2)-[AILV] Occurences: 24(16) RL34_BACST : 9- 20: tyqpn RrkRskvh-GfrA rmstk RL34_BACST : 10- 20: yqpnr Rk-Rskvh-GfrA rmstk RL34_BACST : 19- 30: kvhgf Ra-RmstknGrkV larrr RL34_BACSU : 19- 30: kvhgf Rs-RmssknGrlV larrr RL34_BORBU : 9- 20: tyqps RvkRnrkf-GfrA rmktk RL34_BORBU : 19- 29: rkfgf Ra-Rmktk-GgrL ilsrr RL34_BORBU : 19- 30: rkfgf Ra-RmktkgGrlI lsrrr RL34_BUCAP : 19- 30: rshgf Rt-RmatknGryI lsrrr RL34_COXBU : 19- 30: rthgf Ra-RmatknGrqV lnrrr RL34_ECOLI : 19- 30: rshgf Ra-RmatknGrqV larrr RL34_HAEIN : 19- 30: rthgf Ra-RmatknGrqV larrr RL34_MICLU : 11- 21: fqpnn Rr-Rarkh-GfrA rmrtr RL34_MICLU : 20- 31: rkhgf Ra-RmrtraGraI lsarr RL34_MYCCA : 19- 30: rvhgf Ra-RmatknGrkV ikarr RL34_MYCLE : 13- 23: fqpnn Rr-Rarvh-GfrL rmrtr RL34_MYCLE : 22- 33: rvhgf Rl-RmrtraGrsI vsdrr RL34_PROMI : 19- 30: rnhgf Ra-RmatknGrqV larrr RL34_PSEAE : 19- 30: rvhgf Ra-RmatknGrqV lsrrr RL34_PSEPU : 19- 30: rthgf Ra-RmatknGraV lsrrr RL34_STRBI : 11- 21: fqpnn Rr-Rakth-GfrL rmrtr RL34_STRBI : 20- 31: kthgf Rl-RmrtraGraI lanrr RL34_STRCO : 11- 21: fqpnn Rr-Rakth-GfrL rmrtr RL34_STRCO : 20- 31: kthgf Rl-RmrtraGraI latrr RL34_THETH : 9- 20: txqpn RrkRnknh-GfrA rm RL34_THETH : 10- 20: xqpnr Rk-Rnknh-GfrA rm N 14: 12.5102 16( 16) R-x-R-M Occurences: 16(16) RL34_BACST : 19- 22: kvhgf RaRM stkng RL34_BACSU : 19- 22: kvhgf RsRM sskng RL34_BORBU : 19- 22: rkfgf RaRM ktkgg RL34_BUCAP : 19- 22: rshgf RtRM atkng RL34_COXBU : 19- 22: rthgf RaRM atkng RL34_ECOLI : 19- 22: rshgf RaRM atkng RL34_HAEIN : 19- 22: rthgf RaRM atkng RL34_MICLU : 20- 23: rkhgf RaRM rtrag RL34_MYCCA : 19- 22: rvhgf RaRM atkng RL34_MYCLE : 22- 25: rvhgf RlRM rtrag RL34_PROMI : 19- 22: rnhgf RaRM atkng RL34_PSEAE : 19- 22: rvhgf RaRM atkng RL34_PSEPU : 19- 22: rthgf RaRM atkng RL34_STRBI : 20- 23: kthgf RlRM rtrag RL34_STRCO : 20- 23: kthgf RlRM rtrag RL34_THETH : 19- 22: knhgf RaRM O 15: 11.0102 16( 16) M-x(0,1)-K-x(0,2)-R Occurences: 16(16) RL34_BACST : 1- 3: M-K--R tyqpn RL34_BACSU : 1- 3: M-K--R tfqpn RL34_BORBU : 1- 3: M-K--R tyqps RL34_BUCAP : 1- 3: M-K--R tfqps RL34_COXBU : 1- 3: M-K--R tyqps RL34_ECOLI : 1- 3: M-K--R tfqps RL34_HAEIN : 1- 3: M-K--R tfqps RL34_MICLU : 1- 4: MtK--R tfqpn RL34_MYCCA : 1- 3: M-K--R twqps RL34_MYCLE : 1- 6: MrKgkR tfqpn RL34_PROMI : 1- 3: M-K--R tfqps RL34_PSEAE : 1- 3: M-K--R tfqps RL34_PSEPU : 1- 3: M-K--R tfqps RL34_STRBI : 1- 4: MsK--R tfqpn RL34_STRCO : 1- 4: MsK--R tfqpn RL34_THETH : 1- 3: M-K--R txqpn P 16: 10.5102 59( 16) R-x(1,3)-K-x(0,2)-G Occurences: 59(16) RL34_BACST : 10- 17: yqpnr RkrsKvhG frarm RL34_BACST : 12- 17: pnrrk Rs--KvhG frarm RL34_BACST : 21- 27: hgfra RmstKn-G rkvla RL34_BACST : 33- 38: rkvla RrrrK--G rkvls RL34_BACST : 34- 38: kvlar Rrr-K--G rkvls RL34_BACST : 35- 38: vlarr Rr--K--G rkvls RL34_BACSU : 10- 17: fqpnn RkrsKvhG frsrm RL34_BACSU : 12- 17: pnnrk Rs--KvhG frsrm RL34_BACSU : 21- 27: hgfrs RmssKn-G rlvla RL34_BACSU : 33- 38: rlvla RrrrK--G rkvls RL34_BACSU : 34- 38: lvlar Rrr-K--G rkvls RL34_BACSU : 35- 38: vlarr Rr--K--G rkvls RL34_BORBU : 12- 17: psrvk Rnr-Kf-G frarm RL34_BORBU : 19- 26: rkfgf RarmKtkG grlil RL34_BORBU : 21- 26: fgfra RmktK--G grlil RL34_BORBU : 21- 27: fgfra RmktKg-G rlils RL34_BORBU : 21- 26: fgfra Rm--KtkG grlil RL34_BORBU : 33- 38: rlils RrraK--G rmklt RL34_BORBU : 34- 38: lilsr Rra-K--G rmklt RL34_BORBU : 35- 38: ilsrr Ra--K--G rmklt RL34_BUCAP : 21- 27: hgfrt RmatKn-G ryils RL34_COXBU : 21- 27: hgfra RmatKn-G rqvln RL34_COXBU : 33- 38: rqvln RrraK--G rkrlt RL34_COXBU : 34- 38: qvlnr Rra-K--G rkrlt RL34_COXBU : 35- 38: vlnrr Ra--K--G rkrlt RL34_ECOLI : 21- 27: hgfra RmatKn-G rqvla RL34_ECOLI : 33- 38: rqvla RrraK--G rarlt RL34_ECOLI : 34- 38: qvlar Rra-K--G rarlt RL34_ECOLI : 35- 38: vlarr Ra--K--G rarlt RL34_HAEIN : 21- 27: hgfra RmatKn-G rqvla RL34_HAEIN : 33- 38: rqvla RrraK--G rksls RL34_HAEIN : 34- 38: qvlar Rra-K--G rksls RL34_HAEIN : 35- 38: vlarr Ra--K--G rksls RL34_MICLU : 12- 18: qpnnr RrarKh-G frarm RL34_MICLU : 13- 18: pnnrr Rar-Kh-G frarm RL34_MYCCA : 21- 27: hgfra RmatKn-G rkvik RL34_MYCCA : 34- 38: kvika Rra-K--G rvrls RL34_MYCCA : 35- 38: vikar Ra--K--G rvrls RL34_MYCLE : 37- 41: sivsd Rrr-K--G rrtlt RL34_MYCLE : 38- 41: ivsdr Rr--K--G rrtlt RL34_PROMI : 21- 27: hgfra RmatKn-G rqvla RL34_PROMI : 33- 38: rqvla RrraK--G rarlt RL34_PROMI : 34- 38: qvlar Rra-K--G rarlt RL34_PROMI : 35- 38: vlarr Ra--K--G rarlt RL34_PSEAE : 21- 27: hgfra RmatKn-G rqvls RL34_PSEPU : 21- 27: hgfra RmatKn-G ravls RL34_PSEPU : 33- 38: ravls RrraK--G rkrla RL34_PSEPU : 34- 38: avlsr Rra-K--G rkrla RL34_PSEPU : 35- 38: vlsrr Ra--K--G rkrla RL34_STRBI : 11- 18: fqpnn RrraKthG frlrm RL34_STRBI : 12- 18: qpnnr Rra-KthG frlrm RL34_STRBI : 13- 18: pnnrr Ra--KthG frlrm RL34_STRBI : 35- 39: ailan Rra-K--G rasls RL34_STRBI : 36- 39: ilanr Ra--K--G rasls RL34_STRCO : 11- 18: fqpnn RrraKthG frlrm RL34_STRCO : 12- 18: qpnnr Rra-KthG frlrm RL34_STRCO : 13- 18: pnnrr Ra--KthG frlrm RL34_STRCO : 35- 39: ailat Rrs-K--G rarls RL34_STRCO : 36- 39: ilatr Rs--K--G rarls RL34_THETH : 10- 17: xqpnr RkrnKnhG frarm RL34_THETH : 12- 17: pnrrk Rn--KnhG frarm Q 17: 8.3401 17( 16) R-M Occurences: 17(16) RL34_BACST : 21- 22: hgfra RM stkng RL34_BACSU : 21- 22: hgfrs RM sskng RL34_BORBU : 21- 22: fgfra RM ktkgg RL34_BORBU : 39- 40: rrakg RM kltvs RL34_BUCAP : 21- 22: hgfrt RM atkng RL34_COXBU : 21- 22: hgfra RM atkng RL34_ECOLI : 21- 22: hgfra RM atkng RL34_HAEIN : 21- 22: hgfra RM atkng RL34_MICLU : 22- 23: hgfra RM rtrag RL34_MYCCA : 21- 22: hgfra RM atkng RL34_MYCLE : 24- 25: hgfrl RM rtrag RL34_PROMI : 21- 22: hgfra RM atkng RL34_PSEAE : 21- 22: hgfra RM atkng RL34_PSEPU : 21- 22: hgfra RM atkng RL34_STRBI : 22- 23: hgfrl RM rtrag RL34_STRCO : 22- 23: hgfrl RM rtrag RL34_THETH : 21- 22: hgfra RM R 18: 8.3401 29( 16) K-R Occurences: 29(16) RL34_BACST : 2- 3: m KR tyqpn RL34_BACST : 11- 12: qpnrr KR skvhg RL34_BACSU : 2- 3: m KR tfqpn RL34_BACSU : 11- 12: qpnnr KR skvhg RL34_BORBU : 2- 3: m KR tyqps RL34_BORBU : 11- 12: qpsrv KR nrkfg RL34_BUCAP : 2- 3: m KR tfqps RL34_BUCAP : 11- 12: qpsil KR nrshg RL34_COXBU : 2- 3: m KR tyqps RL34_COXBU : 11- 12: qpskq KR nrthg RL34_COXBU : 40- 41: rakgr KR ltv RL34_ECOLI : 2- 3: m KR tfqps RL34_ECOLI : 11- 12: qpsvl KR nrshg RL34_HAEIN : 2- 3: m KR tfqps RL34_HAEIN : 11- 12: qpsvl KR srthg RL34_MICLU : 3- 4: mt KR tfqpn RL34_MYCCA : 2- 3: m KR twqps RL34_MYCLE : 5- 6: mrkg KR tfqpn RL34_PROMI : 2- 3: m KR tfqps RL34_PROMI : 11- 12: qpsvl KR nrnhg RL34_PSEAE : 2- 3: m KR tfqps RL34_PSEAE : 11- 12: qpstl KR arvhg RL34_PSEPU : 2- 3: m KR tfqps RL34_PSEPU : 11- 12: qpsti KR arthg RL34_PSEPU : 40- 41: rakgr KR lai RL34_STRBI : 3- 4: ms KR tfqpn RL34_STRCO : 3- 4: ms KR tfqpn RL34_THETH : 2- 3: m KR txqpn RL34_THETH : 11- 12: qpnrr KR nknhg S 19: 8.3401 39( 16) R-R Occurences: 39(16) RL34_BACST : 9- 10: tyqpn RR krskv RL34_BACST : 33- 34: rkvla RR rrkgr RL34_BACST : 34- 35: kvlar RR rkgrk RL34_BACST : 35- 36: vlarr RR kgrkv RL34_BACSU : 33- 34: rlvla RR rrkgr RL34_BACSU : 34- 35: lvlar RR rkgrk RL34_BACSU : 35- 36: vlarr RR kgrkv RL34_BORBU : 33- 34: rlils RR rakgr RL34_BORBU : 34- 35: lilsr RR akgrm RL34_BUCAP : 33- 34: ryils RR raklr RL34_BUCAP : 34- 35: yilsr RR aklrt RL34_COXBU : 33- 34: rqvln RR rakgr RL34_COXBU : 34- 35: qvlnr RR akgrk RL34_ECOLI : 33- 34: rqvla RR rakgr RL34_ECOLI : 34- 35: qvlar RR akgra RL34_HAEIN : 33- 34: rqvla RR rakgr RL34_HAEIN : 34- 35: qvlar RR akgrk RL34_MICLU : 11- 12: fqpnn RR rarkh RL34_MICLU : 12- 13: qpnnr RR arkhg RL34_MICLU : 35- 36: ailsa RR gknra RL34_MYCCA : 34- 35: kvika RR akgrv RL34_MYCLE : 13- 14: fqpnn RR rarvh RL34_MYCLE : 14- 15: qpnnr RR arvhg RL34_MYCLE : 37- 38: sivsd RR rkgrr RL34_MYCLE : 38- 39: ivsdr RR kgrrt RL34_MYCLE : 42- 43: rrrkg RR tlta RL34_PROMI : 33- 34: rqvla RR rakgr RL34_PROMI : 34- 35: qvlar RR akgra RL34_PSEAE : 33- 34: rqvls RR ra RL34_PSEAE : 34- 35: qvlsr RR a RL34_PSEPU : 33- 34: ravls RR rakgr RL34_PSEPU : 34- 35: avlsr RR akgrk RL34_STRBI : 11- 12: fqpnn RR rakth RL34_STRBI : 12- 13: qpnnr RR akthg RL34_STRBI : 35- 36: ailan RR akgra RL34_STRCO : 11- 12: fqpnn RR rakth RL34_STRCO : 12- 13: qpnnr RR akthg RL34_STRCO : 35- 36: ailat RR skgra RL34_THETH : 9- 10: txqpn RR krnkn T 20: 7.8401 30( 16) N-x(0,1)-R Occurences: 30(16) RL34_BACST : 8- 9: rtyqp N-R rkrsk RL34_BACST : 8- 10: rtyqp NrR krskv RL34_BACST : 26- 28: rmstk NgR kvlar RL34_BACSU : 8- 10: rtfqp NnR krskv RL34_BACSU : 9- 10: tfqpn N-R krskv RL34_BACSU : 26- 28: rmssk NgR lvlar RL34_BORBU : 13- 14: srvkr N-R kfgfr RL34_BUCAP : 13- 14: silkr N-R shgfr RL34_BUCAP : 26- 28: rmatk NgR yilsr RL34_COXBU : 13- 14: skqkr N-R thgfr RL34_COXBU : 26- 28: rmatk NgR qvlnr RL34_COXBU : 32- 33: grqvl N-R rrakg RL34_COXBU : 32- 34: grqvl NrR rakgr RL34_ECOLI : 13- 14: svlkr N-R shgfr RL34_ECOLI : 26- 28: rmatk NgR qvlar RL34_HAEIN : 26- 28: rmatk NgR qvlar RL34_MICLU : 9- 11: rtfqp NnR rrark RL34_MICLU : 10- 11: tfqpn N-R rrark RL34_MICLU : 10- 12: tfqpn NrR rarkh RL34_MICLU : 39- 40: arrgk N-R aelsa RL34_MYCCA : 26- 28: rmatk NgR kvika RL34_MYCLE : 11- 13: rtfqp NnR rrarv RL34_MYCLE : 12- 13: tfqpn N-R rrarv RL34_MYCLE : 12- 14: tfqpn NrR rarvh RL34_PROMI : 13- 14: svlkr N-R nhgfr RL34_PROMI : 26- 28: rmatk NgR qvlar RL34_PSEAE : 26- 28: rmatk NgR qvlsr RL34_PSEPU : 26- 28: rmatk NgR avlsr RL34_STRBI : 9- 11: rtfqp NnR rrakt RL34_STRBI : 10- 11: tfqpn N-R rrakt RL34_STRBI : 10- 12: tfqpn NrR rakth RL34_STRBI : 34- 35: raila N-R rakgr RL34_STRBI : 34- 36: raila NrR akgra RL34_STRCO : 9- 11: rtfqp NnR rrakt RL34_STRCO : 10- 11: tfqpn N-R rrakt RL34_STRCO : 10- 12: tfqpn NrR rakth RL34_THETH : 8- 9: rtxqp N-R rkrnk RL34_THETH : 8- 10: rtxqp NrR krnkn Number of patterns evaluated by Pratt:73 Total running time: 1 seconds