------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 25 sequences from file RIBOSOMAL_L3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 25 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL31_SCHPO 387 RL32_SCHPO 387 RL3A_ARATH 388 RL3B_ARATH 389 RL3_BACST 213 RL3_BACSU 162 RL3_BOVIN 402 RL3_CYAPA 209 RL3_DICDI 397 RL3_ECOLI 209 RL3_HAEIN 208 RL3_HALHA 329 RL3_HALMA 337 RL3_HUMAN 402 RL3_MOUSE 402 RL3_MYCCA 223 RL3_MYCLE 100 RL3_ORYSA 388 RL3_RAT 402 RL3_THEMA 207 RL3_YEAST 386 RL3_YERPS 129 RM03_HUMAN 348 RM03_RAT 347 RM09_YEAST 269 Pratt run started at Thu Feb 6 21:05:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 46( 25) K-G-x(2,3)-G 2: 12.0102 49( 25) R-x(1,2)-G-x(2)-G 3: 11.5102 58( 25) G-x(1,2)-K-x(1,2)-G 4: 11.5102 43( 25) G-x(2,3)-G-x(1,2)-K 5: 11.0102 38( 25) V-x(1,3)-K-x(2,3)-G 6: 11.0102 48( 25) K-x(3,4)-P-x(0,2)-G 7: 11.0102 52( 25) G-x(1,3)-V-x(3,4)-G 8: 11.0102 52( 25) G-x(3,4)-V-x(0,2)-T 9: 11.0102 79( 25) V-x(0,2)-G-x(1,2)-V 10: 11.0102 59( 25) V-x(2,4)-T-x(3,4)-G 11: 11.0102 37( 25) K-x(1,3)-G-x(0,1)-M 12: 11.0102 40( 25) L-x(1,2)-K-x(0,2)-G 13: 10.5102 60( 25) G-x(2,4)-V-x(0,2)-T 14: 10.5102 53( 25) G-x(1,3)-V-x(0,2)-V 15: 10.5102 53( 25) V-x(1,3)-K-x(1,3)-G 16: 10.5102 91( 25) V-x(1,3)-V-x(3,5)-G 17: 8.3401 51( 25) R-x(2)-L 18: 8.3401 54( 25) V-x(5)-L 19: 8.3401 47( 25) G-x(2)-P 20: 8.3401 86( 25) G-x(3)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 14.8380 31( 25) G-x(1,2)-K-x(1,2)-G-[FM] B 2: 14.2105 31( 25) K-x(1,3)-G-x(0,1)-M-[GT] C 3: 12.0102 46( 25) K-G-x(2,3)-G D 4: 12.0102 49( 25) R-x(1,2)-G-x(2)-G E 5: 11.5102 43( 25) G-x(2,3)-G-x(1,2)-K F 6: 11.0102 38( 25) V-x(1,3)-K-x(2,3)-G G 7: 11.0102 48( 25) K-x(3,4)-P-x(0,2)-G H 8: 11.0102 52( 25) G-x(1,3)-V-x(3,4)-G I 9: 11.0102 52( 25) G-x(3,4)-V-x(0,2)-T J 10: 11.0102 79( 25) V-x(0,2)-G-x(1,2)-V K 11: 11.0102 59( 25) V-x(2,4)-T-x(3,4)-G L 12: 11.0102 40( 25) L-x(1,2)-K-x(0,2)-G M 13: 10.5102 60( 25) G-x(2,4)-V-x(0,2)-T N 14: 10.5102 53( 25) G-x(1,3)-V-x(0,2)-V O 15: 10.5102 53( 25) V-x(1,3)-K-x(1,3)-G P 16: 10.5102 91( 25) V-x(1,3)-V-x(3,5)-G Q 17: 9.9686 28( 25) V-x-[ADGPST]-x(3)-L R 18: 8.3401 51( 25) R-x(2)-L S 19: 8.3401 47( 25) G-x(2)-P T 20: 8.3401 86( 25) G-x(3)-R Best patterns with alignements: fitness hits(seqs) Pattern A 1: 14.8380 31( 25) G-x(1,2)-K-x(1,2)-G-[FM] Occurences: 31(25) RL31_SCHPO : 47- 52: ltafl Gy-Ka-GM thivr RL32_SCHPO : 47- 52: ltafl Gy-Ka-GM thivr RL3A_ARATH : 47- 52: ftafm Gy-Ka-GM thivr RL3B_ARATH : 47- 52: ltsfl Gy-Ka-GM thivr RL3_BACST : 7- 12: tkgil Gr-Ki-GM tqifa RL3_BACST : 112- 119: ivdvt GisKgkGF qgaik RL3_BACSU : 65- 72: ivdvt GvsKgkGF qgaik RL3_BOVIN : 47- 52: ltafl Gy-Ka-GM thivr RL3_CYAPA : 7- 12: sigil Gt-Kl-GM tqifd RL3_DICDI : 47- 52: ltafm Gy-Ka-GM thvvr RL3_DICDI : 221- 228: lidvi GvtKgkGF ngvik RL3_ECOLI : 6- 11: miglv Gk-Kv-GM trift RL3_ECOLI : 111- 118: kvdvt GtsKgkGF agtvk RL3_HAEIN : 6- 11: miglv Gr-Kv-GM trifn RL3_HAEIN : 110- 117: kvdvt GtsKgkGF qggvk RL3_HALHA : 43- 48: lqafa Gy-Ka-GM thvvl RL3_HALMA : 43- 48: vqgfa Gy-Ka-GM thvvl RL3_HUMAN : 47- 52: ltafl Gy-Ka-GM thivr RL3_MOUSE : 47- 52: ltafl Gy-Ka-GM thivr RL3_MYCCA : 110- 117: yvdvt GisKgkGF aggik RL3_MYCLE : 9- 14: rkgil Gt-Kl-GM tqvfd RL3_ORYSA : 47- 52: ltsfv Gy-Ka-GM thivr RL3_RAT : 47- 52: ltafl Gy-Ka-GM thivr RL3_THEMA : 6- 11: mkmii Gr-Ki-GM trvfv RL3_THEMA : 108- 115: yvdvt GwtKgrGF agamk RL3_THEMA : 117- 124: grgfa GamKrwGF sggpk RL3_YEAST : 47- 52: ltsfl Gy-Ka-GM ttivr RL3_YERPS : 31- 38: kvdvt GtsKgkGF agtvk RM03_HUMAN : 217- 224: gkgfq GvmKrwGF kgqpa RM03_RAT : 217- 224: gkgfq GvmKrwGF kgqpa RM09_YEAST : 179- 186: gkgft GvmKryGF kglra B 2: 14.2105 31( 25) K-x(1,3)-G-x(0,1)-M-[GT] Occurences: 31(25) RL31_SCHPO : 49- 53: aflgy Ka--G-MT hivrd RL32_SCHPO : 49- 53: aflgy Ka--G-MT hivrd RL3A_ARATH : 49- 53: afmgy Ka--G-MT hivre RL3B_ARATH : 49- 53: sflgy Ka--G-MT hivrd RL3_BACST : 9- 13: gilgr Ki--G-MT qifae RL3_BACST : 158- 165: rvfkt KnlpGrMG gervt RL3_BACSU : 111- 118: rvfkg KllpGrMG geqit RL3_BOVIN : 49- 53: aflgy Ka--G-MT hivre RL3_CYAPA : 9- 13: gilgt Kl--G-MT qifde RL3_DICDI : 49- 53: afmgy Ka--G-MT hvvrd RL3_ECOLI : 7- 12: iglvg Kkv-G-MT rifte RL3_ECOLI : 8- 12: glvgk Kv--G-MT rifte RL3_ECOLI : 159- 166: kvfkg KkmaGqMG nervt RL3_ECOLI : 160- 166: vfkgk Kma-GqMG nervt RL3_HAEIN : 8- 12: glvgr Kv--G-MT rifne RL3_HALHA : 45- 49: afagy Ka--G-MT hvvlv RL3_HALMA : 45- 49: gfagy Ka--G-MT hvvlv RL3_HUMAN : 49- 53: aflgy Ka--G-MT hivre RL3_MOUSE : 49- 53: aflgy Ka--G-MT hivre RL3_MYCCA : 155- 162: rifks KkmpGhMG nakrt RL3_MYCCA : 156- 162: ifksk Kmp-GhMG nakrt RL3_MYCLE : 11- 15: gilgt Kl--G-MT qvfde RL3_ORYSA : 49- 53: sfvgy Ka--G-MT hivre RL3_RAT : 49- 53: aflgy Ka--G-MT hivre RL3_THEMA : 8- 12: miigr Ki--G-MT rvfvg RL3_YEAST : 49- 53: sflgy Ka--G-MT tivrd RL3_YERPS : 79- 86: kvfkg KkmaGhMG dervt RL3_YERPS : 80- 86: vfkgk Kma-GhMG dervt RM03_HUMAN : 256- 262: vwpgt Kmp-GkMG niyrt RM03_RAT : 256- 262: vwpgt Kmp-GkMG nqnrt RM09_YEAST : 219- 225: vlpgr Kmp-GhMG nehvt C 3: 12.0102 46( 25) K-G-x(2,3)-G Occurences: 46(25) RL31_SCHPO : 223- 227: gvtrg KGne-G ttarw RL32_SCHPO : 223- 227: gvtrg KGne-G ttarw RL3A_ARATH : 226- 230: gvtkg KGye-G vvtrw RL3A_ARATH : 328- 333: dyfmi KGccvG akkrv RL3B_ARATH : 226- 230: gvtkg KGye-G vvtrw RL3B_ARATH : 328- 333: dylmi KGccvG pkkrv RL3_BACST : 3- 7: mt KGil-G rkigm RL3_BACST : 117- 121: giskg KGfq-G aikrh RL3_BACST : 189- 194: nllli KGnvpG prkgl RL3_BACSU : 70- 74: gvskg KGfq-G aikrh RL3_BACSU : 142- 147: nllli KGnvpG akksl RL3_BOVIN : 225- 229: gvtkg KGyk-G vtsrw RL3_BOVIN : 333- 338: dfvml KGcvvG tkkrv RL3_CYAPA : 190- 195: slliv KGsvpG kpggl RL3_DICDI : 226- 230: gvtkg KGfn-G vikrw RL3_DICDI : 332- 337: eflml KGcvaG prkra RL3_ECOLI : 116- 120: gtskg KGfa-G tvkrw RL3_ECOLI : 190- 195: nlllv KGavpG atgsd RL3_HAEIN : 115- 119: gtskg KGfq-G gvkrw RL3_HAEIN : 115- 120: gtskg KGfqgG vkrwn RL3_HAEIN : 189- 194: klllv KGsvpG aingd RL3_HALHA : 8- 12: pnrpr KGsm-G fsprk RL3_HALHA : 202- 206: gitkg KGtq-G pvkrw RL3_HALHA : 290- 295: pytlv KGsvpG peqrl RL3_HALMA : 8- 12: psrpr KGsl-G fgprk RL3_HALMA : 209- 213: gvtkg KGtq-G pvkrw RL3_HALMA : 298- 303: pytlv KGsvpG pdkrl RL3_HUMAN : 225- 229: gvtkg KGyk-G vtsrw RL3_HUMAN : 333- 338: dfvml KGcvvG tkkrv RL3_MOUSE : 225- 229: gvtkg KGyk-G vtsrw RL3_MOUSE : 333- 338: dfiml KGcvvG tkkrv RL3_MYCCA : 2- 6: m KGil-G rkvem RL3_MYCCA : 115- 119: giskg KGfa-G gikrh RL3_MYCCA : 115- 120: giskg KGfagG ikrhn RL3_MYCCA : 186- 191: nimli KGpipG pknsf RL3_MYCLE : 5- 9: mmar KGil-G tklgm RL3_ORYSA : 226- 230: gvtkg KGye-G vvtrw RL3_ORYSA : 328- 333: dylmi KGccvG pkkrv RL3_RAT : 225- 229: gvtkg KGyk-G vtsrw RL3_RAT : 333- 338: dfiml KGcvvG tkkrv RL3_THEMA : 186- 191: dllvv KGgvpG arggl RL3_YEAST : 324- 329: dfimv KGcipG nrkri RL3_YERPS : 36- 40: gtskg KGfa-G tvkrw RL3_YERPS : 110- 115: nlllv KGavpG atggn RM03_HUMAN : 213- 217: aktig KGfq-G vmkrw RM03_RAT : 213- 217: aktig KGfq-G vmkrw RM09_YEAST : 175- 179: svskg KGft-G vmkry RM09_YEAST : 249- 254: nviwv KGsvaG pknsf D 4: 12.0102 49( 25) R-x(1,2)-G-x(2)-G Occurences: 49(25) RL31_SCHPO : 9- 14: kfeqp Rh-GslG flprk RL31_SCHPO : 221- 227: vigvt RgkGneG ttarw RL31_SCHPO : 265- 270: qwtva Ra-GnaG ymhrt RL32_SCHPO : 9- 14: kfeqp Rh-GslG flprk RL32_SCHPO : 221- 227: vigvt RgkGneG ttarw RL32_SCHPO : 265- 270: qwtva Ra-GnaG ymhrt RL3A_ARATH : 9- 14: kfehp Rh-GslG flprk RL3A_ARATH : 268- 273: sytva Ra-GqnG yhhrt RL3A_ARATH : 286- 291: nkkiy Rl-GkvG teaht RL3B_ARATH : 9- 14: kfehp Rh-GslG flprk RL3B_ARATH : 268- 273: sytva Ra-GqnG yhhrt RL3B_ARATH : 286- 291: nkkvy Rv-GkvG qeths RL3_BACST : 141- 147: gsryh RrpGsmG aiapn RL3_BACST : 142- 147: sryhr Rp-GsmG aiapn RL3_BACSU : 94- 100: gsryh RrpGsmG pvdpn RL3_BACSU : 95- 100: sryhr Rp-GsmG pvdpn RL3_BOVIN : 9- 14: kfsap Rh-GslG flprk RL3_BOVIN : 267- 272: afsva Ra-GqkG yhhrt RL3_CYAPA : 141- 147: gsknh RlpGsiG agstp RL3_CYAPA : 160- 166: vypgt RmaGrkG dskit RL3_DICDI : 9- 14: kfeap Rh-GnlG frprk RL3_DICDI : 268- 273: sttvp Ra-GqlG yhhrv RL3_ECOLI : 141- 147: nslsh RvpGsiG qnqtp RL3_HAEIN : 140- 146: nslsh RvlGsiG qnqtp RL3_HALHA : 7- 12: qpnrp Rk-GsmG fsprk RL3_HALHA : 226- 232: arhva RriGnlG pwnps RL3_HALHA : 227- 232: rhvar Ri-GnlG pwnps RL3_HALMA : 7- 12: qpsrp Rk-GslG fgprk RL3_HALMA : 234- 240: rqgwr RriGnlG pwnps RL3_HALMA : 235- 240: qgwrr Ri-GnlG pwnps RL3_HUMAN : 9- 14: kfsap Rh-GslG flprk RL3_HUMAN : 267- 272: afsva Ra-GqkG yhhrt RL3_MOUSE : 9- 14: kfsap Rh-GslG flprk RL3_MOUSE : 267- 272: aftva Ra-GqkG yhhrt RL3_MYCCA : 139- 145: gsgyh RgiGsmG aiinr RL3_MYCLE : 4- 9: mma Rk-GilG tklgm RL3_ORYSA : 9- 14: kfehp Rh-GslG flprk RL3_ORYSA : 268- 273: sytva Ra-GqnG yhhrt RL3_RAT : 9- 14: kfsap Rh-GslG flprk RL3_RAT : 267- 272: afsva Ra-GqkG yhhrt RL3_THEMA : 121- 126: agamk Rw-GfsG gpksh RL3_THEMA : 137- 143: gskfh RelGsvG qhtep RL3_YEAST : 9- 14: kyeap Rh-GhlG flprk RL3_YEAST : 265- 270: mwsva Ra-GqrG yhsrt RL3_YERPS : 61- 67: nslsh RvpGsiG qnqtp RM03_HUMAN : 221- 226: qgvmk Rw-GfkG qpath RM03_RAT : 221- 226: qgvmk Rw-GfkG qpash RM09_YEAST : 183- 188: tgvmk Ry-GfkG lrash RM09_YEAST : 200- 206: tsimh RhgGsyG qnqdp E 5: 11.5102 43( 25) G-x(2,3)-G-x(1,2)-K Occurences: 43(25) RL31_SCHPO : 325- 332: fvmln GatpGpvK rvltl RL32_SCHPO : 325- 332: fvmln GatpGpvK rvltl RL3A_ARATH : 329- 335: yfmik GccvGa-K krvvt RL3A_ARATH : 329- 336: yfmik GccvGakK rvvtl RL3B_ARATH : 87- 93: pmvvv Gvv-GyvK tprgl RL3B_ARATH : 329- 335: ylmik GccvGp-K krvvt RL3B_ARATH : 329- 336: ylmik GccvGpkK rvvtl RL3_BACST : 4- 9: mtk Gil-Gr-K igmtq RL3_BACST : 118- 124: iskgk Gfq-GaiK rhgqs RL3_BACST : 190- 197: lllik GnvpGprK glviv RL3_BACSU : 71- 77: vskgk Gfq-GaiK rhgqs RL3_BACSU : 143- 149: lllik GnvpGa-K kslit RL3_BACSU : 143- 150: lllik GnvpGakK slitv RL3_BOVIN : 334- 340: fvmlk GcvvGt-K krvlt RL3_BOVIN : 334- 341: fvmlk GcvvGtkK rvltl RL3_CYAPA : 4- 9: msi Gil-Gt-K lgmtq RL3_CYAPA : 118- 124: ysigr Gfs-GyqK rhnfa RL3_CYAPA : 163- 169: gtrma Grk-GdsK itirg RL3_DICDI : 227- 233: vtkgk Gfn-GviK rwgvr RL3_DICDI : 333- 340: flmlk GcvaGprK raltl RL3_ECOLI : 3- 8: mi Glv-Gk-K vgmtr RL3_ECOLI : 117- 123: tskgk Gfa-GtvK rwnfr RL3_HAEIN : 3- 8: mi Glv-Gr-K vgmtr RL3_HAEIN : 116- 122: tskgk GfqgGv-K rwnfr RL3_HAEIN : 116- 122: tskgk Gfq-GgvK rwnfr RL3_HALHA : 142- 149: thtvp GdhaGvpK knpdv RL3_HALHA : 203- 209: itkgk Gtq-GpvK rwgvq RL3_HALMA : 40- 45: qpgvq Gfa-Gy-K agmth RL3_HALMA : 210- 216: vtkgk Gtq-GpvK rwgvq RL3_HALMA : 299- 306: ytlvk GsvpGpdK rlvpf RL3_HUMAN : 334- 340: fvmlk GcvvGt-K krvlt RL3_HUMAN : 334- 341: fvmlk GcvvGtkK rvltl RL3_MOUSE : 334- 340: fimlk GcvvGt-K krvlt RL3_MOUSE : 334- 341: fimlk GcvvGtkK rvltl RL3_MYCCA : 3- 8: mk Gil-Gr-K vemtq RL3_MYCCA : 116- 122: iskgk GfagGi-K rhnys RL3_MYCCA : 116- 122: iskgk Gfa-GgiK rhnys RL3_MYCCA : 159- 165: skkmp Ghm-GnaK rtiqn RL3_MYCCA : 187- 193: imlik GpipGp-K nsfvq RL3_MYCLE : 6- 11: mmark Gil-Gt-K lgmtq RL3_ORYSA : 329- 335: ylmik GccvGp-K krvvt RL3_ORYSA : 329- 336: ylmik GccvGpkK rvvtl RL3_RAT : 334- 340: fimlk GcvvGt-K krvlt RL3_RAT : 334- 341: fimlk GcvvGtkK rvltl RL3_THEMA : 114- 120: wtkgr Gfa-GamK rwgfs RL3_THEMA : 123- 129: amkrw GfsgGp-K shgsk RL3_THEMA : 123- 129: amkrw Gfs-GgpK shgsk RL3_YEAST : 325- 332: fimvk GcipGnrK rivtl RL3_YERPS : 37- 43: tskgk Gfa-GtvK rwnfr RM03_HUMAN : 214- 220: ktigk Gfq-GvmK rwgfk RM03_HUMAN : 287- 293: iiyvn GsvpGh-K nclvk RM03_RAT : 214- 220: ktigk Gfq-GvmK rwgfk RM09_YEAST : 176- 182: vskgk Gft-GvmK rygfk RM09_YEAST : 250- 256: viwvk GsvaGp-K nsfvk F 6: 11.0102 38( 25) V-x(1,3)-K-x(2,3)-G Occurences: 38(25) RL31_SCHPO : 219- 227: idvig VtrgKgneG ttarw RL32_SCHPO : 219- 227: idvig VtrgKgneG ttarw RL3A_ARATH : 89- 97: vvvgv VayvKtprG lrsln RL3A_ARATH : 222- 227: idiig Vt--Kgk-G yegvv RL3A_ARATH : 222- 230: idiig VtkgKgyeG vvtrw RL3B_ARATH : 89- 97: vvvgv VgyvKtprG lrslc RL3B_ARATH : 222- 227: idiig Vt--Kgk-G yegvv RL3B_ARATH : 222- 230: idiig VtkgKgyeG vvtrw RL3_BACST : 154- 162: iapnr VfktKnlpG rmgge RL3_BACSU : 66- 71: vdvtg Vs--Kgk-G fqgai RL3_BACSU : 66- 74: vdvtg VskgKgfqG aikrh RL3_BACSU : 107- 115: vdpnr VfkgKllpG rmgge RL3_BOVIN : 221- 226: idvig Vt--Kgk-G ykgvt RL3_BOVIN : 221- 229: idvig VtkgKgykG vtsrw RL3_BOVIN : 381- 389: grfqt VeekKafmG plkkd RL3_CYAPA : 193- 199: ivkgs Vpg-Kpg-G lltit RL3_DICDI : 222- 227: idvig Vt--Kgk-G fngvi RL3_DICDI : 222- 230: idvig VtkgKgfnG vikrw RL3_DICDI : 231- 236: kgfng Vi--Krw-G vrklp RL3_ECOLI : 5- 10: migl Vg--Kkv-G mtrif RL3_ECOLI : 60- 66: kkanr Vt--KpeaG hfaka RL3_ECOLI : 155- 163: qtpgk VfkgKkmaG qmgne RL3_HAEIN : 60- 66: kkanr Vt--KpeaG hfvka RL3_HAEIN : 154- 162: qtpgr VfkgKkmaG hlgae RL3_HALHA : 213- 218: vkrwg Vq--Krk-G kharh RL3_HALMA : 205- 210: advag Vt--Kgk-G tqgpv RL3_HALMA : 205- 213: advag VtkgKgtqG pvkrw RL3_HALMA : 220- 225: vkrwg Vq--Krk-G kharq RL3_HUMAN : 221- 226: idvig Vt--Kgk-G ykgvt RL3_HUMAN : 221- 229: idvig VtkgKgykG vtsrw RL3_MOUSE : 221- 226: idvig Vt--Kgk-G ykgvt RL3_MOUSE : 221- 229: idvig VtkgKgykG vtsrw RL3_MYCCA : 60- 66: krvnl Vn--KpelG hfkka RL3_MYCLE : 63- 69: isprk Vn--KpvtG qynsa RL3_ORYSA : 89- 97: vivgl VayvKtprG lrsln RL3_ORYSA : 222- 227: idiig Vt--Kgk-G yegvv RL3_ORYSA : 222- 230: idiig VtkgKgyeG vvtrw RL3_RAT : 221- 226: idvig Vt--Kgk-G ykgvt RL3_RAT : 221- 229: idvig VtkgKgykG vtsrw RL3_THEMA : 57- 63: ekakk Vn--KplaG hfkkf RL3_YEAST : 219- 224: idaia Vt--Kgh-G fegvt RL3_YERPS : 75- 83: qtpgk VfkgKkmaG hmgde RM03_HUMAN : 206- 212: gqyvd Vta-Kti-G kgfqg RM03_HUMAN : 218- 223: kgfqg Vm--Krw-G fkgqp RM03_RAT : 206- 212: gqyvd Vta-Kti-G kgfqg RM03_RAT : 218- 223: kgfqg Vm--Krw-G fkgqp RM09_YEAST : 171- 176: vdvrs Vs--Kgk-G ftgvm RM09_YEAST : 171- 179: vdvrs VskgKgftG vmkry RM09_YEAST : 180- 185: kgftg Vm--Kry-G fkglr G 7: 11.0102 48( 25) K-x(3,4)-P-x(0,2)-G Occurences: 48(25) RL31_SCHPO : 4- 11: shc Kfeq-PrhG slgfl RL31_SCHPO : 302- 308: fdate Krit-Pm-G gfvry RL31_SCHPO : 302- 309: fdate Krit-PmgG fvryg RL32_SCHPO : 4- 11: shc Kfeq-PrhG slgfl RL32_SCHPO : 302- 308: fdate Krit-Pm-G gfvry RL32_SCHPO : 302- 309: fdate Krit-PmgG fvryg RL3A_ARATH : 4- 11: shr Kfeh-PrhG slgfl RL3A_ARATH : 306- 312: ydrte Kdvt-Pm-G gfphy RL3A_ARATH : 306- 313: ydrte Kdvt-PmgG fphyg RL3B_ARATH : 4- 11: shr Kfeh-PrhG slgfl RL3B_ARATH : 306- 312: ydrte Kdit-Pm-G gfphy RL3B_ARATH : 306- 313: ydrte Kdit-PmgG fphyg RL3_BACST : 59- 67: edise KrankPqiG haaka RL3_BACST : 156- 162: pnrvf KtknlP--G rmgge RL3_BACST : 189- 194: nllli Kgnv-P--G prkgl RL3_BACSU : 12- 20: ddkre KlsnkPekG hvaka RL3_BACSU : 109- 115: pnrvf KgkllP--G rmgge RL3_BACSU : 142- 147: nllli Kgnv-P--G akksl RL3_BOVIN : 4- 11: shr Kfsa-PrhG slgfl RL3_BOVIN : 311- 317: ydlsd Ksin-Pl-G gfvhy RL3_BOVIN : 311- 318: ydlsd Ksin-PlgG fvhyg RL3_CYAPA : 138- 144: mshgs KnhrlP--G sigag RL3_CYAPA : 190- 195: slliv Kgsv-P--G kpggl RL3_DICDI : 4- 11: shr Kfea-PrhG nlgfr RL3_DICDI : 310- 316: fdlte Ktin-Pm-G gfahy RL3_DICDI : 310- 317: fdlte Ktin-PmgG fahyg RL3_ECOLI : 190- 195: nlllv Kgav-P--G atgsd RL3_HAEIN : 189- 194: klllv Kgsv-P--G aingd RL3_HALHA : 57- 64: vlvdd Kana-PteG mettv RL3_HALHA : 290- 295: pytlv Kgsv-P--G peqrl RL3_HALMA : 298- 303: pytlv Kgsv-P--G pdkrl RL3_HUMAN : 4- 11: shr Kfsa-PrhG slgfl RL3_HUMAN : 311- 317: ydlsd Ksin-Pl-G gfvhy RL3_HUMAN : 311- 318: ydlsd Ksin-PlgG fvhyg RL3_MOUSE : 4- 11: shr Kfsa-PrhG slgfl RL3_MOUSE : 311- 317: ydlsd Ksin-Pl-G gfvhy RL3_MOUSE : 311- 318: ydlsd Ksin-PlgG fvhyg RL3_MYCCA : 153- 159: inrif KskkmP--G hmgna RL3_MYCCA : 186- 191: nimli Kgpi-P--G pknsf RL3_MYCLE : 62- 69: eispr Kvnk-PvtG qynsa RL3_ORYSA : 4- 11: shr Kfeh-PrhG slgfl RL3_ORYSA : 306- 312: fdrte Kdit-Pm-G gfphy RL3_ORYSA : 306- 313: fdrte Kdit-PmgG fphyg RL3_RAT : 4- 11: shr Kfsa-PrhG slgfl RL3_RAT : 311- 317: ydlsd Ksin-Pl-G gfvhy RL3_RAT : 311- 318: ydlsd Ksin-PlgG fvhyg RL3_THEMA : 55- 63: gfeka KkvnkPlaG hfkkf RL3_THEMA : 56- 63: fekak Kvnk-PlaG hfkkf RL3_THEMA : 153- 159: pakiw KgkkmP--G rygne RL3_THEMA : 186- 191: dllvv Kggv-P--G arggl RL3_YEAST : 4- 11: shr Kyea-PrhG hlgfl RL3_YEAST : 301- 308: sfdrt KktitPm-G gfvhy RL3_YEAST : 301- 309: sfdrt KktitPmgG fvhyg RL3_YEAST : 302- 308: fdrtk Ktit-Pm-G gfvhy RL3_YEAST : 302- 309: fdrtk Ktit-PmgG fvhyg RL3_YEAST : 324- 329: dfimv Kgci-P--G nrkri RL3_YERPS : 110- 115: nlllv Kgav-P--G atggn RM03_HUMAN : 235- 241: thgqt KthrrP--G avatg RM03_RAT : 235- 241: shgqt KthrrP--G aistg RM09_YEAST : 146- 152: rvkde KglipP--G tllkp RM09_YEAST : 146- 152: rvkde Kgli-Pp-G tllkp H 8: 11.0102 52( 25) G-x(1,3)-V-x(3,4)-G Occurences: 52(25) RL31_SCHPO : 90- 97: vvgvv Gy--VetprG lrslt RL31_SCHPO : 244- 252: rkthr GlrkVaci-G awhpa RL32_SCHPO : 90- 97: vvgvv Gy--VetprG lrslt RL32_SCHPO : 244- 252: rkthr GlrkVaci-G awhpa RL3A_ARATH : 227- 236: vtkgk GyegVvtrwG vtrlp RL3A_ARATH : 230- 236: gkgye Gv--Vtrw-G vtrlp RL3A_ARATH : 247- 255: rkthr GlrkVaci-G awhpa RL3B_ARATH : 90- 97: vvgvv Gy--VktprG lrslc RL3B_ARATH : 227- 236: vtkgk GyegVvtrwG vtrlp RL3B_ARATH : 230- 236: gkgye Gv--Vtrw-G vtrlp RL3B_ARATH : 247- 255: rkthr GlrkVaci-G awhpa RL3_BACST : 105- 112: difse Gdi-Vdvt-G iskgk RL3_BACSU : 58- 65: eifsa Gei-Vdvt-G vskgk RL3_BOVIN : 90- 97: ivgiv Gy--VetprG lrtfk RL3_BOVIN : 246- 254: rkthr GlrkVaci-G awhpa RL3_CYAPA : 191- 198: llivk Gs--VpgkpG gllti RL3_DICDI : 90- 97: ivglv Gy--VetaqG lktyk RL3_DICDI : 227- 236: vtkgk GfngVikrwG vrklp RL3_DICDI : 247- 255: rkthk GlrkVaci-G awhps RL3_ECOLI : 3- 10: mi Gl--VgkkvG mtrif RL3_ECOLI : 191- 198: lllvk Ga--VpgatG sdliv RL3_HAEIN : 3- 10: mi Gl--VgrkvG mtrif RL3_HAEIN : 44- 53: tlend GytaVqvttG skkan RL3_HALHA : 178- 184: dlied Gg--Vhaf-G dvfra RL3_HALHA : 184- 190: gvhaf Gd--Vfra-G efada RL3_HALHA : 206- 212: gkgtq Gp--Vkrw-G vqkrk RL3_HALMA : 34- 43: wpsdd GqpgVqgfaG ykagm RL3_HALMA : 213- 219: gkgtq Gp--Vkrw-G vqkrk RL3_HUMAN : 90- 97: vvgiv Gy--VetprG lrtfk RL3_HUMAN : 246- 254: rkthr GlrkVaci-G awhpa RL3_MOUSE : 90- 97: vvgiv Gy--VetprG lrtfk RL3_MOUSE : 246- 254: rkthr GlrkVaci-G awhpa RL3_MYCCA : 44- 51: tidsd Gy--VavqlG ttdkr RL3_MYCCA : 103- 110: difvs Gey-Vdvt-G iskgk RL3_MYCLE : 47- 56: tlerd GysaVqlayG eispr RL3_ORYSA : 227- 236: vtkgk GyegVvtrwG vtrlp RL3_ORYSA : 230- 236: gkgye Gv--Vtrw-G vtrlp RL3_ORYSA : 247- 255: rkthr GlrkVaci-G awhpa RL3_RAT : 90- 97: vvgiv Gy--VetprG lrtfk RL3_RAT : 246- 254: rkthr GlrkVaci-G awhpa RL3_THEMA : 101- 108: dvfek Gey-Vdvt-G wtkgr RL3_THEMA : 187- 194: llvvk Gg--VpgarG glvli RL3_YEAST : 90- 97: vvgvv Gy--VetprG lrslt RL3_YEAST : 224- 233: vtkgh GfegVthrwG tkklp RL3_YEAST : 244- 252: rkthr GlrkVaci-G achpa RL3_YERPS : 111- 118: lllvk Ga--VpgatG gnliv RM03_HUMAN : 11- 19: lltqv Gaq-VlgrlG dglga RM03_HUMAN : 214- 223: ktigk GfqgVmkrwG fkgqp RM03_RAT : 10- 18: rllaq GgaqVlgg-G agglg RM03_RAT : 11- 18: llaqg Gaq-Vlgg-G agglg RM03_RAT : 214- 223: ktigk GfqgVmkrwG fkgqp RM09_YEAST : 176- 185: vskgk GftgVmkryG fkglr I 9: 11.0102 52( 25) G-x(3,4)-V-x(0,2)-T Occurences: 52(25) RL31_SCHPO : 87- 94: pmvvv GvvgyVe-T prglr RL31_SCHPO : 329- 336: ngatp GpvkrVl-T lrksl RL32_SCHPO : 87- 94: pmvvv GvvgyVe-T prglr RL32_SCHPO : 329- 336: ngatp GpvkrVl-T lrksl RL3A_ARATH : 87- 94: amvvv GvvayVk-T prglr RL3A_ARATH : 227- 233: vtkgk GyegvV--T rwgvt RL3A_ARATH : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3A_ARATH : 333- 340: kgccv GakkrVv-T lrqsl RL3B_ARATH : 87- 94: pmvvv GvvgyVk-T prglr RL3B_ARATH : 227- 233: vtkgk GyegvV--T rwgvt RL3B_ARATH : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3B_ARATH : 333- 340: kgccv GpkkrVv-T lrqtl RL3_BACST : 20- 26: ifaen GdlipV--T vihat RL3_BACST : 105- 111: difse GdivdV--T giskg RL3_BACST : 165- 170: lpgrm Gger-V--T iqnlk RL3_BACSU : 58- 64: eifsa GeivdV--T gvskg RL3_BOVIN : 87- 94: pmviv GivgyVe-T prglr RL3_BOVIN : 226- 231: vtkgk Gykg-V--T srwht RL3_BOVIN : 338- 345: kgcvv GtkkrVl-T lrksl RL3_CYAPA : 20- 26: ifdea GnaipV--T iiqag RL3_DICDI : 87- 94: pmyiv GlvgyVe-T aqglk RL3_ECOLI : 19- 25: ifted GvsipV--T vieve RL3_ECOLI : 166- 171: magqm Gner-V--T vqsld RL3_HAEIN : 19- 25: ifned GvsvpV--T vieie RL3_HAEIN : 44- 51: tlend Gyta-VqvT tgskk RL3_HAEIN : 165- 170: maghl Gaer-V--T vqsle RL3_HALHA : 64- 72: napte GmettVpvT vetpp RL3_HALMA : 64- 72: nspre GmeetVpvT vietp RL3_HUMAN : 87- 94: pmvvv GivgyVe-T prglr RL3_HUMAN : 226- 231: vtkgk Gykg-V--T srwht RL3_HUMAN : 338- 345: kgcvv GtkkrVl-T lrksl RL3_MOUSE : 87- 94: pmvvv GivgyVe-T prglr RL3_MOUSE : 226- 231: vtkgk Gykg-V--T srwht RL3_MOUSE : 338- 345: kgcvv GtkkrVl-T lrksl RL3_MYCCA : 19- 25: vftns GqlvpV--T vvevl RL3_MYCCA : 103- 109: difvs GeyvdV--T giskg RL3_MYCLE : 33- 38: tvvka Gpnv-V--T rirtl RL3_ORYSA : 87- 94: plviv GlvayVk-T prglr RL3_ORYSA : 227- 233: vtkgk GyegvV--T rwgvt RL3_ORYSA : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3_ORYSA : 333- 340: kgccv GpkkrVv-T lrqsl RL3_RAT : 87- 94: pmvvv GivgyVe-T prglr RL3_RAT : 226- 231: vtkgk Gykg-V--T srwht RL3_RAT : 338- 345: kgcvv GtkkrVl-T lrksl RL3_THEMA : 17- 24: trvfv Gnds-VpvT vikag RL3_THEMA : 101- 107: dvfek GeyvdV--T gwtkg RL3_THEMA : 162- 167: mpgry Gner-V--T vrnlq RL3_YEAST : 87- 94: pvvvv GvvgyVe-T prglr RL3_YEAST : 224- 229: vtkgh Gfeg-V--T hrwgt RL3_YERPS : 86- 91: maghm Gder-V--T vqsld RM03_HUMAN : 114- 120: lwtkd GqkhvV--T llqvq RM03_HUMAN : 114- 120: lwtkd Gqkh-Vv-T llqvq RM03_HUMAN : 201- 207: ahfrp GqyvdV--T aktig RM03_RAT : 114- 120: lwtkd GqkhaV--T llqvq RM03_RAT : 201- 207: ahfrp GqyvdV--T aktig RM09_YEAST : 225- 230: mpghm Gneh-V--T iqnvk J 10: 11.0102 79( 25) V-x(0,2)-G-x(1,2)-V Occurences: 79(25) RL31_SCHPO : 84- 89: etppm VvvGv-V gyvet RL31_SCHPO : 85- 89: tppmv Vv-Gv-V gyvet RL31_SCHPO : 86- 89: ppmvv V--Gv-V gyvet RL31_SCHPO : 88- 92: mvvvg Vv-Gy-V etprg RL31_SCHPO : 89- 92: vvvgv V--Gy-V etprg RL31_SCHPO : 182- 187: lmeiq VngGs-V adkve RL31_SCHPO : 182- 187: lmeiq Vn-GgsV adkve RL31_SCHPO : 311- 316: pmggf VryGv-V endfv RL32_SCHPO : 84- 89: etppm VvvGv-V gyvet RL32_SCHPO : 85- 89: tppmv Vv-Gv-V gyvet RL32_SCHPO : 86- 89: ppmvv V--Gv-V gyvet RL32_SCHPO : 88- 92: mvvvg Vv-Gy-V etprg RL32_SCHPO : 89- 92: vvvgv V--Gy-V etprg RL32_SCHPO : 182- 187: lmeiq VngGs-V adkve RL32_SCHPO : 182- 187: lmeiq Vn-GgsV adkve RL32_SCHPO : 311- 316: pmggf VryGv-V endfv RL3A_ARATH : 84- 89: etpam VvvGv-V ayvkt RL3A_ARATH : 85- 89: tpamv Vv-Gv-V ayvkt RL3A_ARATH : 86- 89: pamvv V--Gv-V ayvkt RL3B_ARATH : 84- 89: etppm VvvGv-V gyvkt RL3B_ARATH : 85- 89: tppmv Vv-Gv-V gyvkt RL3B_ARATH : 86- 89: ppmvv V--Gv-V gyvkt RL3B_ARATH : 88- 92: mvvvg Vv-Gy-V ktprg RL3B_ARATH : 89- 92: vvvgv V--Gy-V ktprg RL3B_ARATH : 287- 290: kkvyr V--Gk-V gqeth RL3_BACST : 93- 97: ineye V--GqeV kvdif RL3_BACSU : 46- 50: mdaye V--GqeV kveif RL3_BOVIN : 84- 89: etppm VivGi-V gyvet RL3_BOVIN : 86- 89: ppmvi V--Gi-V gyvet RL3_BOVIN : 89- 92: vivgi V--Gy-V etprg RL3_BOVIN : 184- 189: lmevq VngGt-V aekld RL3_BOVIN : 184- 189: lmevq Vn-GgtV aekld RL3_BOVIN : 320- 325: plggf VhyGe-V tndfv RL3_CYAPA : 189- 193: rslli Vk-Gs-V pgkpg RL3_DICDI : 86- 89: ppmyi V--Gl-V gyvet RL3_DICDI : 89- 92: yivgl V--Gy-V etaqg RL3_DICDI : 185- 191: vleiq VngGsiV ekvnf RL3_ECOLI : 5- 9: migl V--GkkV gmtri RL3_ECOLI : 189- 193: rnlll Vk-Ga-V pgatg RL3_HAEIN : 5- 9: migl V--GrkV gmtri RL3_HAEIN : 188- 192: rklll Vk-Gs-V pgain RL3_HALHA : 289- 293: gpytl Vk-Gs-V pgpeq RL3_HALMA : 166- 171: vmetr VggGs-V sdrld RL3_HALMA : 166- 171: vmetr Vg-GgsV sdrld RL3_HALMA : 280- 285: gdept VdgGf-V nygev RL3_HALMA : 280- 285: gdept Vd-GgfV nygev RL3_HALMA : 285- 290: vdggf VnyGe-V dgpyt RL3_HALMA : 297- 301: gpytl Vk-Gs-V pgpdk RL3_HUMAN : 84- 89: etppm VvvGi-V gyvet RL3_HUMAN : 85- 89: tppmv Vv-Gi-V gyvet RL3_HUMAN : 86- 89: ppmvv V--Gi-V gyvet RL3_HUMAN : 89- 92: vvvgi V--Gy-V etprg RL3_HUMAN : 184- 189: lmeiq VngGt-V aekld RL3_HUMAN : 184- 189: lmeiq Vn-GgtV aekld RL3_HUMAN : 320- 325: plggf VhyGe-V tndfv RL3_MOUSE : 84- 89: etppm VvvGi-V gyvet RL3_MOUSE : 85- 89: tppmv Vv-Gi-V gyvet RL3_MOUSE : 86- 89: ppmvv V--Gi-V gyvet RL3_MOUSE : 89- 92: vvvgi V--Gy-V etprg RL3_MOUSE : 184- 189: lmeiq VngGt-V aekld RL3_MOUSE : 184- 189: lmeiq Vn-GgtV aekld RL3_MOUSE : 320- 325: plggf VhyGe-V tndfi RL3_MYCCA : 101- 106: vsdif Vs-GeyV dvtgi RL3_MYCLE : 30- 36: vpvtv VkaGpnV vtrir RL3_ORYSA : 84- 89: etppl VivGl-V ayvkt RL3_ORYSA : 86- 89: pplvi V--Gl-V ayvkt RL3_RAT : 84- 89: etppm VvvGi-V gyvet RL3_RAT : 85- 89: tppmv Vv-Gi-V gyvet RL3_RAT : 86- 89: ppmvv V--Gi-V gyvet RL3_RAT : 89- 92: vvvgi V--Gy-V etprg RL3_RAT : 184- 189: lmeiq VngGt-V aekld RL3_RAT : 184- 189: lmeiq Vn-GgtV aekld RL3_RAT : 320- 325: plggf VhyGe-V tndfi RL3_THEMA : 184- 189: endll VvkGg-V pgarg RL3_THEMA : 185- 189: ndllv Vk-Gg-V pgarg RL3_YEAST : 84- 89: dtppv VvvGv-V gyvet RL3_YEAST : 85- 89: tppvv Vv-Gv-V gyvet RL3_YEAST : 86- 89: ppvvv V--Gv-V gyvet RL3_YEAST : 88- 92: vvvvg Vv-Gy-V etprg RL3_YEAST : 89- 92: vvvgv V--Gy-V etprg RL3_YERPS : 109- 113: rnlll Vk-Ga-V pgatg RM03_HUMAN : 10- 14: rlltq V--GaqV lgrlg RM03_HUMAN : 147- 152: matls Vg-GktV srfrk RM03_HUMAN : 285- 289: hniiy Vn-Gs-V pghkn RM03_RAT : 268- 273: nqnrt Vy-GlkV wrvnt RM03_RAT : 285- 289: hniiy Vn-Gs-V ghrnc RM09_YEAST : 248- 252: nnviw Vk-Gs-V agpkn K 11: 11.0102 59( 25) V-x(2,4)-T-x(3,4)-G Occurences: 59(25) RL31_SCHPO : 40- 47: daskp Vhl--Tafl-G ykagm RL31_SCHPO : 216- 224: nemid Vigv-Trgk-G negtt RL31_SCHPO : 259- 267: whpan Vqw--TvaraG nagym RL32_SCHPO : 40- 47: daskp Vhl--Tafl-G ykagm RL32_SCHPO : 216- 224: nemid Vigv-Trgk-G negtt RL32_SCHPO : 259- 267: whpan Vqw--TvaraG nagym RL3A_ARATH : 262- 270: whpar Vsy--TvaraG qngyh RL3B_ARATH : 262- 270: whpar Vsy--TvaraG qngyh RL3_BACST : 35- 45: atpnv VlqkkTiendG yeaiq RL3_BACST : 108- 116: segdi Vdv--TgiskG kgfqg RL3_BACST : 154- 162: iapnr Vfk--TknlpG rmgge RL3_BACSU : 61- 69: sagei Vdv--TgvskG kgfqg RL3_BOVIN : 40- 47: dsskp Vhl--Tafl-G ykagm RL3_BOVIN : 218- 226: demid Vigv-Tkgk-G ykgvt RL3_CYAPA : 155- 163: stpgr Vypg-Trma-G rkgds RL3_DICDI : 40- 47: drtqk Vhl--Tafm-G ykagm RL3_DICDI : 219- 227: nelid Vigv-Tkgk-G fngvi RL3_DICDI : 262- 270: whpsr Vst--TvpraG qlgyh RL3_ECOLI : 107- 115: advkk Vdv--TgtskG kgfag RL3_ECOLI : 107- 117: advkk VdvtgTskgkG fagtv RL3_ECOLI : 109- 117: vkkvd Vtg--TskgkG fagtv RL3_HAEIN : 34- 44: ieanr VtqvkTlendG ytavq RL3_HAEIN : 106- 114: advkk Vdv--TgtskG kgfqg RL3_HAEIN : 106- 116: advkk VdvtgTskgkG fqggv RL3_HAEIN : 108- 116: vkkvd Vtg--TskgkG fqggv RL3_HALHA : 154- 161: kknpd Vme--Trvg-G gtlad RL3_HALHA : 154- 162: kknpd Vme--TrvggG tladr RL3_HALHA : 239- 247: wnpsr Vrs--TvpqqG qtgyh RL3_HALHA : 282- 291: pnyge VdgpyTlvk-G svpgp RL3_HALHA : 319- 329: rldpe VryvsTasnqG RL3_HALMA : 161- 168: kkkpd Vme--Trvg-G gsvsd RL3_HALMA : 161- 169: kkkpd Vme--TrvggG svsdr RL3_HALMA : 202- 210: geyad Vagv-Tkgk-G tqgpv RL3_HALMA : 247- 255: wnpsr Vrs--TvpqqG qtgyh RL3_HALMA : 290- 299: vnyge VdgpyTlvk-G svpgp RL3_HUMAN : 40- 47: dpskp Vhl--Tafl-G ykagm RL3_HUMAN : 218- 226: demid Vigv-Tkgk-G ykgvt RL3_MOUSE : 40- 47: daskp Vhl--Tafl-G ykagm RL3_MOUSE : 218- 226: demid Vigv-Tkgk-G ykgvt RL3_MOUSE : 261- 269: whpar Vaf--TvaraG qkgyh RL3_MYCCA : 34- 44: vlpnt VlqvkTidsdG yvavq RL3_MYCCA : 106- 114: vsgey Vdv--TgiskG kgfag RL3_MYCLE : 24- 33: dennr Vvpv-TvvkaG pnvvt RL3_MYCLE : 25- 33: ennrv Vpv--TvvkaG pnvvt RL3_MYCLE : 37- 47: agpnv VtrirTlerdG ysavq RL3_ORYSA : 262- 270: whpar Vsy--TvaraG qngyh RL3_RAT : 40- 47: dpskp Vhl--Tafl-G ykagm RL3_RAT : 218- 226: demid Vigv-Tkgk-G ykgvt RL3_THEMA : 21- 29: vgnds Vpv--TvikaG pcvvv RL3_THEMA : 33- 43: agpcv VvqkkTvekdG ynavq RL3_THEMA : 34- 43: gpcvv Vqkk-TvekdG ynavq RL3_THEMA : 104- 112: ekgey Vdv--TgwtkG rgfag RL3_THEMA : 106- 114: geyvd Vtgw-Tkgr-G fagam RL3_YEAST : 40- 47: drskp Val--Tsfl-G ykagm RL3_YERPS : 27- 35: advkk Vdv--TgtskG kgfag RL3_YERPS : 27- 37: advkk VdvtgTskgkG fagtv RL3_YERPS : 29- 37: vkkvd Vtg--TskgkG fagtv RM03_HUMAN : 204- 212: rpgqy Vdv--TaktiG kgfqg RM03_HUMAN : 206- 214: gqyvd Vtak-Tigk-G fqgvm RM03_HUMAN : 251- 259: gdigr Vwpg-Tkmp-G kmgni RM03_RAT : 204- 212: rpgqy Vdv--TaktiG kgfqg RM03_RAT : 206- 214: gqyvd Vtak-Tigk-G fqgvm RM03_RAT : 251- 259: gdiar Vwpg-Tkmp-G kmgnq RM09_YEAST : 92- 102: vnnve VimhrTsevnG yfacq L 12: 11.0102 40( 25) L-x(1,2)-K-x(0,2)-G Occurences: 40(25) RL31_SCHPO : 46- 51: hltaf LgyKa-G mthiv RL32_SCHPO : 46- 51: hltaf LgyKa-G mthiv RL3A_ARATH : 287- 291: kkiyr Lg-Kv-G teaht RL3B_ARATH : 46- 51: rltsf LgyKa-G mthiv RL3B_ARATH : 325- 329: vkedy LmiK--G ccvgp RL3_BACST : 6- 11: mtkgi LgrKi-G mtqif RL3_BACST : 186- 190: pernl LliK--G nvpgp RL3_BACST : 187- 190: ernll Li-K--G nvpgp RL3_BACSU : 139- 143: aernl LliK--G nvpga RL3_BACSU : 140- 143: ernll Li-K--G nvpga RL3_BOVIN : 46- 51: hltaf LgyKa-G mthiv RL3_BOVIN : 291- 295: igqgy Li-Kd-G klikn RL3_CYAPA : 6- 11: msigi LgtKl-G mtqif RL3_CYAPA : 187- 191: sersl LivK--G svpgk RL3_DICDI : 59- 63: hvvrd Le-Kp-G skmhk RL3_DICDI : 329- 333: vkhef LmlK--G cvagp RL3_ECOLI : 4- 10: mig LvgKkvG mtrif RL3_ECOLI : 187- 191: aernl LlvK--G avpga RL3_ECOLI : 188- 191: ernll Lv-K--G avpga RL3_HAEIN : 186- 190: aerkl LlvK--G svpga RL3_HAEIN : 187- 190: erkll Lv-K--G svpga RL3_HALHA : 288- 291: dgpyt Lv-K--G svpgp RL3_HALMA : 296- 299: dgpyt Lv-K--G svpgp RL3_HUMAN : 46- 51: hltaf LgyKa-G mthiv RL3_HUMAN : 291- 295: igqgy Li-Kd-G klikn RL3_MOUSE : 46- 51: hltaf LgyKa-G mthiv RL3_MOUSE : 291- 295: igqgy Li-Kd-G klikn RL3_MYCCA : 184- 187: snnim Li-K--G pipgp RL3_MYCLE : 8- 13: arkgi LgtKl-G mtqvf RL3_ORYSA : 325- 329: vkgdy LmiK--G ccvgp RL3_RAT : 46- 51: hltaf LgyKa-G mthiv RL3_RAT : 291- 295: igqgy Li-Kd-G klikn RL3_THEMA : 183- 187: pendl LvvK--G gvpga RL3_THEMA : 183- 188: pendl LvvKg-G vpgar RL3_YEAST : 46- 51: altsf LgyKa-G mttiv RL3_YERPS : 107- 111: aernl LlvK--G avpga RL3_YERPS : 108- 111: ernll Lv-K--G avpga RM03_HUMAN : 41- 46: lfvrg LhgKs-G twwde RM03_HUMAN : 109- 114: lgmmp LwtKd-G qkhvv RM03_RAT : 109- 114: lgmmp LwtKd-G qkhav RM09_YEAST : 55- 60: narkw Lp-KrcG litrk M 13: 10.5102 60( 25) G-x(2,4)-V-x(0,2)-T Occurences: 60(25) RL31_SCHPO : 87- 94: pmvvv GvvgyVe-T prglr RL31_SCHPO : 329- 336: ngatp GpvkrVl-T lrksl RL32_SCHPO : 87- 94: pmvvv GvvgyVe-T prglr RL32_SCHPO : 329- 336: ngatp GpvkrVl-T lrksl RL3A_ARATH : 87- 94: amvvv GvvayVk-T prglr RL3A_ARATH : 227- 233: vtkgk GyegvV--T rwgvt RL3A_ARATH : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3A_ARATH : 333- 340: kgccv GakkrVv-T lrqsl RL3B_ARATH : 87- 94: pmvvv GvvgyVk-T prglr RL3B_ARATH : 227- 233: vtkgk GyegvV--T rwgvt RL3B_ARATH : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3B_ARATH : 333- 340: kgccv GpkkrVv-T lrqtl RL3_BACST : 20- 26: ifaen GdlipV--T vihat RL3_BACST : 105- 111: difse GdivdV--T giskg RL3_BACST : 105- 111: difse Gdi--VdvT giskg RL3_BACST : 165- 170: lpgrm Gger-V--T iqnlk RL3_BACST : 166- 170: pgrmg Ger--V--T iqnlk RL3_BACSU : 58- 64: eifsa GeivdV--T gvskg RL3_BACSU : 58- 64: eifsa Gei--VdvT gvskg RL3_BOVIN : 87- 94: pmviv GivgyVe-T prglr RL3_BOVIN : 226- 231: vtkgk Gykg-V--T srwht RL3_BOVIN : 334- 339: fvmlk Gcv--Vg-T kkrvl RL3_BOVIN : 338- 345: kgcvv GtkkrVl-T lrksl RL3_CYAPA : 20- 26: ifdea GnaipV--T iiqag RL3_DICDI : 87- 94: pmyiv GlvgyVe-T aqglk RL3_ECOLI : 6- 12: miglv Gkk--VgmT rifte RL3_ECOLI : 19- 25: ifted GvsipV--T vieve RL3_ECOLI : 166- 171: magqm Gner-V--T vqsld RL3_HAEIN : 6- 12: miglv Grk--VgmT rifne RL3_HAEIN : 19- 25: ifned GvsvpV--T vieie RL3_HAEIN : 19- 25: ifned Gvs--VpvT vieie RL3_HAEIN : 44- 51: tlend Gyta-VqvT tgskk RL3_HAEIN : 165- 170: maghl Gaer-V--T vqsle RL3_HALHA : 64- 72: napte GmettVpvT vetpp RL3_HALMA : 64- 72: nspre GmeetVpvT vietp RL3_HUMAN : 87- 94: pmvvv GivgyVe-T prglr RL3_HUMAN : 226- 231: vtkgk Gykg-V--T srwht RL3_HUMAN : 334- 339: fvmlk Gcv--Vg-T kkrvl RL3_HUMAN : 338- 345: kgcvv GtkkrVl-T lrksl RL3_MOUSE : 87- 94: pmvvv GivgyVe-T prglr RL3_MOUSE : 226- 231: vtkgk Gykg-V--T srwht RL3_MOUSE : 334- 339: fimlk Gcv--Vg-T kkrvl RL3_MOUSE : 338- 345: kgcvv GtkkrVl-T lrksl RL3_MYCCA : 6- 12: mkgil Grk--VemT qvftn RL3_MYCCA : 19- 25: vftns GqlvpV--T vvevl RL3_MYCCA : 19- 25: vftns Gql--VpvT vvevl RL3_MYCCA : 103- 109: difvs GeyvdV--T giskg RL3_MYCCA : 103- 109: difvs Gey--VdvT giskg RL3_MYCLE : 33- 38: tvvka Gpnv-V--T rirtl RL3_MYCLE : 33- 38: tvvka Gpn--Vv-T rirtl RL3_ORYSA : 87- 94: plviv GlvayVk-T prglr RL3_ORYSA : 227- 233: vtkgk GyegvV--T rwgvt RL3_ORYSA : 227- 233: vtkgk Gyeg-Vv-T rwgvt RL3_ORYSA : 333- 340: kgccv GpkkrVv-T lrqsl RL3_RAT : 87- 94: pmvvv GivgyVe-T prglr RL3_RAT : 226- 231: vtkgk Gykg-V--T srwht RL3_RAT : 334- 339: fimlk Gcv--Vg-T kkrvl RL3_RAT : 338- 345: kgcvv GtkkrVl-T lrksl RL3_THEMA : 17- 24: trvfv Gnds-VpvT vikag RL3_THEMA : 101- 107: dvfek GeyvdV--T gwtkg RL3_THEMA : 101- 107: dvfek Gey--VdvT gwtkg RL3_THEMA : 162- 167: mpgry Gner-V--T vrnlq RL3_YEAST : 87- 94: pvvvv GvvgyVe-T prglr RL3_YEAST : 224- 229: vtkgh Gfeg-V--T hrwgt RL3_YERPS : 86- 91: maghm Gder-V--T vqsld RM03_HUMAN : 114- 120: lwtkd GqkhvV--T llqvq RM03_HUMAN : 114- 120: lwtkd Gqkh-Vv-T llqvq RM03_HUMAN : 201- 207: ahfrp GqyvdV--T aktig RM03_HUMAN : 201- 207: ahfrp Gqy--VdvT aktig RM03_RAT : 114- 120: lwtkd GqkhaV--T llqvq RM03_RAT : 201- 207: ahfrp GqyvdV--T aktig RM03_RAT : 201- 207: ahfrp Gqy--VdvT aktig RM09_YEAST : 225- 230: mpghm Gneh-V--T iqnvk N 14: 10.5102 53( 25) G-x(1,3)-V-x(0,2)-V Occurences: 53(25) RL31_SCHPO : 87- 92: pmvvv Gv--VgyV etprg RL31_SCHPO : 329- 334: ngatp Gp--VkrV ltlrk RL32_SCHPO : 87- 92: pmvvv Gv--VgyV etprg RL32_SCHPO : 329- 334: ngatp Gp--VkrV ltlrk RL3A_ARATH : 87- 92: amvvv Gv--VayV ktprg RL3A_ARATH : 227- 232: vtkgk GyegV--V trwgv RL3B_ARATH : 87- 92: pmvvv Gv--VgyV ktprg RL3B_ARATH : 227- 232: vtkgk GyegV--V trwgv RL3_BACST : 94- 99: neyev Gqe-Vk-V difse RL3_BACST : 105- 110: difse Gdi-Vd-V tgisk RL3_BACST : 198- 202: pgprk Gl--Vi-V ksavk RL3_BACSU : 47- 52: dayev Gqe-Vk-V eifsa RL3_BACSU : 58- 63: eifsa Gei-Vd-V tgvsk RL3_BOVIN : 87- 92: pmviv Gi--VgyV etprg RL3_BOVIN : 334- 337: fvmlk Gc--V--V gtkkr RL3_CYAPA : 174- 180: kitir GlkiVk-V dsers RL3_DICDI : 51- 56: mgyka GmthV--V rdlek RL3_DICDI : 87- 92: pmyiv Gl--VgyV etaqg RL3_DICDI : 187- 194: eiqvn GgsiVekV nfava RL3_DICDI : 188- 194: iqvng Gsi-VekV nfava RL3_ECOLI : 166- 172: magqm GnerVt-V qsldv RL3_HAEIN : 19- 24: ifned Gvs-Vp-V tviei RL3_HAEIN : 44- 50: tlend GytaVq-V ttgsk RL3_HAEIN : 165- 171: maghl GaerVt-V qslev RL3_HAEIN : 198- 202: pgain Gd--Vi-V kpavk RL3_HALHA : 47- 52: agyka GmthV--V lvddk RL3_HALHA : 47- 54: agyka GmthVvlV ddkan RL3_HALMA : 47- 52: agyka GmthV--V lvnde RL3_HALMA : 47- 54: agyka GmthVvlV ndepn RL3_HUMAN : 87- 92: pmvvv Gi--VgyV etprg RL3_HUMAN : 334- 337: fvmlk Gc--V--V gtkkr RL3_MOUSE : 87- 92: pmvvv Gi--VgyV etprg RL3_MOUSE : 334- 337: fimlk Gc--V--V gtkkr RL3_MYCCA : 19- 24: vftns Gql-Vp-V tvvev RL3_MYCCA : 44- 48: tidsd Gy--Va-V qlgtt RL3_MYCCA : 91- 96: qgyei Gq--VinV sdifv RL3_MYCCA : 103- 108: difvs Gey-Vd-V tgisk RL3_MYCLE : 33- 37: tvvka Gpn-V--V trirt RL3_ORYSA : 87- 92: plviv Gl--VayV ktprg RL3_ORYSA : 227- 232: vtkgk GyegV--V trwgv RL3_RAT : 87- 92: pmvvv Gi--VgyV etprg RL3_RAT : 334- 337: fimlk Gc--V--V gtkkr RL3_THEMA : 10- 16: igrki GmtrVf-V gndsv RL3_THEMA : 17- 23: trvfv GndsVp-V tvika RL3_THEMA : 29- 33: tvika Gpc-V--V vqkkt RL3_THEMA : 29- 34: tvika GpcvV--V qkktv RL3_THEMA : 29- 34: tvika Gpc-Vv-V qkktv RL3_THEMA : 90- 95: deyep Gq--VikV dvfek RL3_THEMA : 101- 106: dvfek Gey-Vd-V tgwtk RL3_THEMA : 162- 168: mpgry GnerVt-V rnlqv RL3_YEAST : 87- 92: pvvvv Gv--VgyV etprg RL3_YERPS : 86- 92: maghm GderVt-V qsldv RM03_HUMAN : 114- 119: lwtkd GqkhV--V tllqv RM03_HUMAN : 201- 206: ahfrp Gqy-Vd-V takti RM03_RAT : 201- 206: ahfrp Gqy-Vd-V takti RM03_RAT : 270- 276: nrtvy Glk-VwrV ntkhn RM09_YEAST : 163- 168: sffke Gqy-Vd-V rsvsk O 15: 10.5102 53( 25) V-x(1,3)-K-x(1,3)-G Occurences: 53(25) RL31_SCHPO : 219- 227: idvig VtrgKgneG ttarw RL32_SCHPO : 219- 227: idvig VtrgKgneG ttarw RL3A_ARATH : 59- 63: hivre Ve--Kp--G sklhk RL3A_ARATH : 89- 97: vvvgv VayvKtprG lrsln RL3A_ARATH : 222- 227: idiig Vt--Kgk-G yegvv RL3A_ARATH : 222- 230: idiig VtkgKgyeG vvtrw RL3B_ARATH : 59- 63: hivrd Ve--Kp--G sklhk RL3B_ARATH : 89- 97: vvvgv VgyvKtprG lrslc RL3B_ARATH : 222- 227: idiig Vt--Kgk-G yegvv RL3B_ARATH : 222- 230: idiig VtkgKgyeG vvtrw RL3B_ARATH : 287- 291: kkvyr Vg--Kv--G qeths RL3_BACST : 154- 162: iapnr VfktKnlpG rmgge RL3_BACSU : 66- 71: vdvtg Vs--Kgk-G fqgai RL3_BACSU : 66- 74: vdvtg VskgKgfqG aikrh RL3_BACSU : 107- 115: vdpnr VfkgKllpG rmgge RL3_BOVIN : 221- 226: idvig Vt--Kgk-G ykgvt RL3_BOVIN : 221- 229: idvig VtkgKgykG vtsrw RL3_BOVIN : 381- 389: grfqt VeekKafmG plkkd RL3_CYAPA : 193- 198: ivkgs Vpg-Kp--G gllti RL3_CYAPA : 193- 199: ivkgs Vpg-Kpg-G lltit RL3_DICDI : 222- 227: idvig Vt--Kgk-G fngvi RL3_DICDI : 222- 230: idvig VtkgKgfnG vikrw RL3_DICDI : 231- 236: kgfng Vi--Krw-G vrklp RL3_ECOLI : 5- 10: migl Vgk-Kv--G mtrif RL3_ECOLI : 5- 10: migl Vg--Kkv-G mtrif RL3_ECOLI : 60- 66: kkanr Vt--KpeaG hfaka RL3_ECOLI : 155- 163: qtpgk VfkgKkmaG qmgne RL3_HAEIN : 5- 10: migl Vgr-Kv--G mtrif RL3_HAEIN : 60- 66: kkanr Vt--KpeaG hfvka RL3_HAEIN : 154- 162: qtpgr VfkgKkmaG hlgae RL3_HALHA : 213- 218: vkrwg Vq--Krk-G kharh RL3_HALMA : 205- 210: advag Vt--Kgk-G tqgpv RL3_HALMA : 205- 213: advag VtkgKgtqG pvkrw RL3_HALMA : 220- 225: vkrwg Vq--Krk-G kharq RL3_HUMAN : 221- 226: idvig Vt--Kgk-G ykgvt RL3_HUMAN : 221- 229: idvig VtkgKgykG vtsrw RL3_MOUSE : 221- 226: idvig Vt--Kgk-G ykgvt RL3_MOUSE : 221- 229: idvig VtkgKgykG vtsrw RL3_MYCCA : 60- 66: krvnl Vn--KpelG hfkka RL3_MYCLE : 27- 33: nrvvp VtvvKa--G pnvvt RL3_MYCLE : 29- 33: vvpvt Vv--Ka--G pnvvt RL3_MYCLE : 63- 69: isprk Vn--KpvtG qynsa RL3_ORYSA : 46- 51: hltsf Vgy-Ka--G mthiv RL3_ORYSA : 59- 63: hivre Ve--Kp--G sklhk RL3_ORYSA : 89- 97: vivgl VayvKtprG lrsln RL3_ORYSA : 222- 227: idiig Vt--Kgk-G yegvv RL3_ORYSA : 222- 230: idiig VtkgKgyeG vvtrw RL3_ORYSA : 284- 288: emnkk Vy--Ki--G ksgqe RL3_RAT : 221- 226: idvig Vt--Kgk-G ykgvt RL3_RAT : 221- 229: idvig VtkgKgykG vtsrw RL3_THEMA : 23- 29: ndsvp VtviKa--G pcvvv RL3_THEMA : 25- 29: svpvt Vi--Ka--G pcvvv RL3_THEMA : 39- 43: vqkkt Ve--Kd--G ynavq RL3_THEMA : 57- 63: ekakk Vn--KplaG hfkkf RL3_THEMA : 184- 188: endll Vv--Kg--G vpgar RL3_YEAST : 219- 224: idaia Vt--Kgh-G fegvt RL3_YERPS : 75- 83: qtpgk VfkgKkmaG hmgde RM03_HUMAN : 206- 212: gqyvd Vta-Kti-G kgfqg RM03_HUMAN : 218- 223: kgfqg Vm--Krw-G fkgqp RM03_RAT : 147- 152: tatlt Vgg-Kt--G srlyk RM03_RAT : 186- 190: vtdna Vi--Kq--G tplya RM03_RAT : 206- 212: gqyvd Vta-Kti-G kgfqg RM03_RAT : 218- 223: kgfqg Vm--Krw-G fkgqp RM09_YEAST : 171- 176: vdvrs Vs--Kgk-G ftgvm RM09_YEAST : 171- 179: vdvrs VskgKgftG vmkry RM09_YEAST : 180- 185: kgftg Vm--Kry-G fkglr P 16: 10.5102 91( 25) V-x(1,3)-V-x(3,5)-G Occurences: 91(25) RL31_SCHPO : 84- 90: etppm Vv--Vgvv--G yvetp RL31_SCHPO : 88- 97: mvvvg VvgyVetpr-G lrslt RL31_SCHPO : 89- 97: vvvgv Vgy-Vetpr-G lrslt RL31_SCHPO : 216- 224: nemid Vig-Vtrgk-G negtt RL31_SCHPO : 259- 267: whpan VqwtVara--G nagym RL32_SCHPO : 84- 90: etppm Vv--Vgvv--G yvetp RL32_SCHPO : 88- 97: mvvvg VvgyVetpr-G lrslt RL32_SCHPO : 89- 97: vvvgv Vgy-Vetpr-G lrslt RL32_SCHPO : 216- 224: nemid Vig-Vtrgk-G negtt RL32_SCHPO : 259- 267: whpan VqwtVara--G nagym RL3A_ARATH : 56- 63: gmthi Vre-Vekp--G sklhk RL3A_ARATH : 88- 97: mvvvg VvayVktpr-G lrsln RL3A_ARATH : 89- 97: vvvgv Vay-Vktpr-G lrsln RL3A_ARATH : 262- 270: whpar VsytVara--G qngyh RL3B_ARATH : 56- 63: gmthi Vrd-Vekp--G sklhk RL3B_ARATH : 84- 90: etppm Vv--Vgvv--G yvktp RL3B_ARATH : 88- 97: mvvvg VvgyVktpr-G lrslc RL3B_ARATH : 89- 97: vvvgv Vgy-Vktpr-G lrslc RL3B_ARATH : 262- 270: whpar VsytVara--G qngyh RL3B_ARATH : 284- 291: emnkk Vyr-Vgkv--G qeths RL3_BACST : 97- 105: evgqe Vk--VdifseG divdv RL3_BACST : 108- 116: segdi Vd--VtgiskG kgfqg RL3_BACSU : 50- 58: evgqe Vk--VeifsaG eivdv RL3_BACSU : 61- 69: sagei Vd--VtgvskG kgfqg RL3_BACSU : 63- 71: geivd Vtg-Vskgk-G fqgai RL3_BOVIN : 56- 63: gmthi Vre-Vdrp--G skvnk RL3_BOVIN : 84- 90: etppm Vi--Vgiv--G yvetp RL3_BOVIN : 89- 97: vivgi Vgy-Vetpr-G lrtfk RL3_BOVIN : 204- 211: rleqq Vp--Vsqvf-G qdemi RL3_BOVIN : 218- 226: demid Vig-Vtkgk-G ykgvt RL3_BOVIN : 261- 269: whpar VafsVara--G qkgyh RL3_CYAPA : 189- 198: rslli VkgsVpgkp-G gllti RL3_CYAPA : 189- 199: rslli VkgsVpgkpgG lltit RL3_DICDI : 89- 97: yivgl Vgy-Vetaq-G lktyk RL3_DICDI : 219- 227: nelid Vig-Vtkgk-G fngvi RL3_DICDI : 262- 270: whpsr VsttVpra--G qlgyh RL3_ECOLI : 104- 111: elfad Vkk-Vdvt--G tskgk RL3_ECOLI : 107- 115: advkk Vd--VtgtskG kgfag RL3_ECOLI : 189- 198: rnlll VkgaVpgat-G sdliv RL3_HAEIN : 69- 78: eaghf VkagVeagr-G lwefr RL3_HAEIN : 103- 110: difad Vkk-Vdvt--G tskgk RL3_HAEIN : 106- 114: advkk Vd--VtgtskG kgfqg RL3_HAEIN : 188- 198: rklll VkgsVpgainG dvivk RL3_HALHA : 239- 247: wnpsr VrstVpqq--G qtgyh RL3_HALMA : 202- 210: geyad Vag-Vtkgk-G tqgpv RL3_HALMA : 247- 255: wnpsr VrstVpqq--G qtgyh RL3_HUMAN : 56- 63: gmthi Vre-Vdrp--G skvnk RL3_HUMAN : 84- 90: etppm Vv--Vgiv--G yvetp RL3_HUMAN : 89- 97: vvvgi Vgy-Vetpr-G lrtfk RL3_HUMAN : 204- 211: rleqq Vp--Vnqvf-G qdemi RL3_HUMAN : 218- 226: demid Vig-Vtkgk-G ykgvt RL3_HUMAN : 261- 269: whpar VafsVara--G qkgyh RL3_MOUSE : 56- 63: gmthi Vre-Vdrp--G skvnk RL3_MOUSE : 84- 90: etppm Vv--Vgiv--G yvetp RL3_MOUSE : 89- 97: vvvgi Vgy-Vetpr-G lrtfk RL3_MOUSE : 204- 211: rleqq Vp--Vnqvf-G qdemi RL3_MOUSE : 218- 226: demid Vig-Vtkgk-G ykgvt RL3_MOUSE : 261- 269: whpar VaftVara--G qkgyh RL3_MYCCA : 57- 66: ttdkr Vnl-VnkpelG hfkka RL3_MYCCA : 106- 114: vsgey Vd--VtgiskG kgfag RL3_MYCLE : 24- 33: dennr Vvp-VtvvkaG pnvvt RL3_MYCLE : 25- 33: ennrv VpvtVvka--G pnvvt RL3_MYCLE : 25- 33: ennrv Vp--VtvvkaG pnvvt RL3_MYCLE : 27- 33: nrvvp Vt--Vvka--G pnvvt RL3_ORYSA : 56- 63: gmthi Vre-Vekp--G sklhk RL3_ORYSA : 89- 97: vivgl Vay-Vktpr-G lrsln RL3_ORYSA : 262- 270: whpar VsytVara--G qngyh RL3_RAT : 56- 63: gmthi Vre-Vdrp--G skvnk RL3_RAT : 84- 90: etppm Vv--Vgiv--G yvetp RL3_RAT : 89- 97: vvvgi Vgy-Vetpr-G lrtfk RL3_RAT : 204- 211: rleqq Vp--Vnqvf-G qdemi RL3_RAT : 218- 226: demid Vig-Vtkgk-G ykgvt RL3_RAT : 261- 269: whpar VafsVara--G qkgyh RL3_THEMA : 21- 29: vgnds VpvtVika--G pcvvv RL3_THEMA : 21- 29: vgnds Vp--VtvikaG pcvvv RL3_THEMA : 23- 29: ndsvp Vt--Vika--G pcvvv RL3_THEMA : 92- 101: yepgq Vik-VdvfekG eyvdv RL3_THEMA : 95- 101: gqvik Vd--Vfek--G eyvdv RL3_THEMA : 104- 112: ekgey Vd--VtgwtkG rgfag RL3_THEMA : 185- 194: ndllv VkggVpgar-G glvli RL3_THEMA : 185- 195: ndllv VkggVpgargG lvlir RL3_YEAST : 83- 90: vdtpp Vvv-Vgvv--G yvetp RL3_YEAST : 83- 90: vdtpp Vv--Vvgvv-G yvetp RL3_YEAST : 84- 90: dtppv Vv--Vgvv--G yvetp RL3_YEAST : 88- 97: vvvvg VvgyVetpr-G lrslt RL3_YEAST : 89- 97: vvvgv Vgy-Vetpr-G lrslt RL3_YEAST : 259- 267: chpah VmwsVara--G qrgyh RL3_YERPS : 24- 31: eifad Vkk-Vdvt--G tskgk RL3_YERPS : 27- 35: advkk Vd--VtgtskG kgfag RL3_YERPS : 109- 118: rnlll VkgaVpgat-G gnliv RL3_YERPS : 109- 119: rnlll VkgaVpgatgG nlivk RM03_HUMAN : 10- 19: rlltq VgaqVlgrl-G dglga RM03_HUMAN : 204- 212: rpgqy Vd--VtaktiG kgfqg RM03_RAT : 204- 212: rpgqy Vd--VtaktiG kgfqg RM09_YEAST : 166- 174: kegqy Vd--VrsvskG kgftg RM09_YEAST : 168- 176: gqyvd Vrs-Vskgk-G ftgvm RM09_YEAST : 245- 254: ddenn Viw-VkgsvaG pknsf Q 17: 9.9686 28( 25) V-x-[ADGPST]-x(3)-L Occurences: 28(25) RL31_SCHPO : 92- 98: gvvgy VeTprgL rsltt RL32_SCHPO : 92- 98: gvvgy VeTprgL rsltt RL3A_ARATH : 92- 98: gvvay VkTprgL rslnt RL3B_ARATH : 92- 98: gvvgy VkTprgL rslct RL3_BACST : 179- 185: lkivk VdPernL llikg RL3_BACSU : 132- 138: leivk VdAernL llikg RL3_BOVIN : 92- 98: givgy VeTprgL rtfkt RL3_CYAPA : 180- 186: lkivk VdSersL livkg RL3_DICDI : 92- 98: glvgy VeTaqgL ktykt RL3_DICDI : 210- 216: vnvtg VfAeneL idvig RL3_ECOLI : 73- 79: fakag VeAgrgL wefrl RL3_ECOLI : 180- 186: ldvvr VdAernL llvkg RL3_HAEIN : 73- 79: fvkag VeAgrgL wefrt RL3_HAEIN : 179- 185: levvr VdAerkL llvkg RL3_HALHA : 282- 288: pnyge VdGpytL vkgsv RL3_HALMA : 290- 296: vnyge VdGpytL vkgsv RL3_HUMAN : 92- 98: givgy VeTprgL rtfkt RL3_MOUSE : 92- 98: givgy VeTprgL rtfkt RL3_MYCCA : 29- 35: vtvve VlPntvL qvkti RL3_MYCLE : 76- 82: ynsag VnPrryL aelrl RL3_ORYSA : 92- 98: glvay VkTprgL rslns RL3_RAT : 92- 98: givgy VeTprgL rtfkt RL3_THEMA : 70- 76: fkkfg VePmkiL refrv RL3_YEAST : 92- 98: gvvgy VeTprgL rsltt RL3_YERPS : 100- 106: ldvvr VdAernL llvkg RM03_HUMAN : 124- 130: vtllq VqDchvL kytsk RM03_RAT : 124- 130: vtllq VqDchvL kytpk RM09_YEAST : 142- 148: vaqfr VkDekgL ippgt R 18: 8.3401 51( 25) R-x(2)-L Occurences: 51(25) RL31_SCHPO : 69- 72: skmhk ReiL eavtv RL31_SCHPO : 274- 277: agymh RtqL nskiy RL31_SCHPO : 338- 341: rvltl RksL lthts RL31_SCHPO : 347- 350: lthts RkaL epvsl RL32_SCHPO : 69- 72: skmhk ReiL eavti RL32_SCHPO : 274- 277: agymh RtqL nskiy RL32_SCHPO : 338- 341: rvltl RksL lthts RL32_SCHPO : 347- 350: lthts RkaL epvsl RL3A_ARATH : 277- 280: ngyhh RteL nkkiy RL3A_ARATH : 342- 345: rvvtl RqsL ltqts RL3A_ARATH : 351- 354: ltqts RlaL eeikl RL3B_ARATH : 342- 345: rvvtl RqtL lkqts RL3_BACST : 183- 186: kvdpe RnlL likgn RL3_BACST : 196- 199: nvpgp RkgL vivks RL3_BACSU : 10- 13: gfddk RekL snkpe RL3_BACSU : 136- 139: kvdae RnlL likgn RL3_BOVIN : 197- 200: kldwa RerL eqqvp RL3_BOVIN : 347- 350: rvltl RksL lvqtk RL3_BOVIN : 356- 359: lvqtk RraL ekidl RL3_CYAPA : 184- 187: kvdse RslL ivkgs RL3_DICDI : 114- 117: lsdnf RrrL yknwy RL3_DICDI : 355- 358: ttqtg RaaL ekitl RL3_ECOLI : 184- 187: rvdae RnlL lvkga RL3_HAEIN : 183- 186: rvdae RklL lvkgs RL3_HALHA : 254- 257: tgyhq RteL nkrli RL3_HALHA : 302- 305: eqrlv RfrL gvrpn RL3_HALMA : 262- 265: tgyhq RteL nkrli RL3_HUMAN : 197- 200: kldwa RerL eqqvp RL3_HUMAN : 347- 350: rvltl RksL lvqtk RL3_HUMAN : 356- 359: lvqtk RraL ekidl RL3_MOUSE : 197- 200: kldwa RerL eqqvp RL3_MOUSE : 347- 350: rvltl RksL lvqtk RL3_MOUSE : 356- 359: lvqtk RraL ekidl RL3_MYCCA : 56- 59: gttdk RvnL vnkpe RL3_MYCLE : 79- 82: agvnp RryL aelrl RL3_ORYSA : 342- 345: rvvtl RqsL lkqts RL3_ORYSA : 351- 354: lkqts RlaL eeikl RL3_RAT : 197- 200: kldwa RerL eqqvp RL3_RAT : 347- 350: rvltl RksL lvqtk RL3_RAT : 356- 359: lvqtk RraL ekidl RL3_THEMA : 193- 196: gvpga RggL vlirs RL3_YEAST : 338- 341: rivtl RksL ytnts RL3_YEAST : 347- 350: ytnts RkaL eevsl RL3_YERPS : 104- 107: rvdae RnlL lvkga RM03_HUMAN : 96- 99: epgsf RvgL ialkl RM03_RAT : 96- 99: epgss RvgL ialkl RM03_RAT : 292- 295: gsvgh RncL vkikd RM09_YEAST : 23- 26: rysst RpfL vapsi RM09_YEAST : 52- 55: elana RkwL pkrcg RM09_YEAST : 58- 61: kwlpk RcgL itrkk RM09_YEAST : 120- 123: lskvs RqmL ghfas S 19: 8.3401 47( 25) G-x(2)-P Occurences: 47(25) RL31_SCHPO : 14- 17: rhgsl GflP rkras RL31_SCHPO : 325- 328: fvmln GatP gpvkr RL32_SCHPO : 14- 17: rhgsl GflP rkras RL32_SCHPO : 325- 328: fvmln GatP gpvkr RL3A_ARATH : 14- 17: rhgsl GflP rkran RL3A_ARATH : 312- 315: dvtpm GgfP hygiv RL3B_ARATH : 14- 17: rhgsl GflP rkras RL3B_ARATH : 312- 315: ditpm GgfP hygiv RL3_BACST : 190- 193: lllik GnvP gprkg RL3_BACSU : 143- 146: lllik GnvP gakks RL3_BOVIN : 14- 17: rhgsl GflP rkrss RL3_CYAPA : 31- 34: tiiqa GpcP itqik RL3_CYAPA : 149- 152: gsiga GstP grvyp RL3_CYAPA : 191- 194: llivk GsvP gkpgg RL3_DICDI : 14- 17: rhgnl GfrP rkraa RL3_ECOLI : 191- 194: lllvk GavP gatgs RL3_HAEIN : 190- 193: lllvk GsvP gaing RL3_HALHA : 12- 15: rkgsm GfsP rkrae RL3_HALHA : 90- 93: edtpy GkkP ltevw RL3_HALHA : 267- 270: idind GdeP spdgg RL3_HALHA : 274- 277: epspd GgfP nygev RL3_HALHA : 291- 294: ytlvk GsvP gpeqr RL3_HALHA : 306- 309: vrfrl GvrP nespr RL3_HALMA : 12- 15: rkgsl GfgP rkrst RL3_HALMA : 93- 96: edtpy GqrP ltevw RL3_HALMA : 275- 278: idige GdeP tvdgg RL3_HALMA : 299- 302: ytlvk GsvP gpdkr RL3_HUMAN : 14- 17: rhgsl GflP rkrss RL3_MOUSE : 14- 17: rhgsl GflP rkrss RL3_MYCCA : 187- 190: imlik GpiP gpkns RL3_MYCLE : 75- 78: qynsa GvnP rryla RL3_ORYSA : 14- 17: rhgsl GflP rkrss RL3_ORYSA : 312- 315: ditpm GgfP hygvv RL3_RAT : 14- 17: rhgsl GflP rkrss RL3_THEMA : 69- 72: hfkkf GveP mkilr RL3_THEMA : 187- 190: llvvk GgvP gargg RL3_YEAST : 14- 17: rhghl GflP rkraa RL3_YEAST : 325- 328: fimvk GciP gnrkr RL3_YERPS : 111- 114: lllvk GavP gatgg RM03_HUMAN : 105- 108: ialkl GmmP lwtkd RM03_HUMAN : 169- 172: fyrel GlpP kqtvk RM03_HUMAN : 287- 290: iiyvn GsvP ghknc RM03_RAT : 23- 26: gaggl GaaP glgsr RM03_RAT : 105- 108: ialkl GmmP lwtkd RM03_RAT : 169- 172: fyrdl GlpP kqttk RM09_YEAST : 67- 70: itrkk GmmP yfdks RM09_YEAST : 147- 150: vkdek GliP pgtll T 20: 8.3401 86( 25) G-x(3)-R Occurences: 86(25) RL31_SCHPO : 14- 18: rhgsl GflpR krasr RL31_SCHPO : 227- 231: gkgne GttaR wgtkr RL31_SCHPO : 270- 274: ragna GymhR tqlns RL31_SCHPO : 308- 312: ritpm GgfvR ygvve RL31_SCHPO : 329- 333: ngatp GpvkR vltlr RL32_SCHPO : 14- 18: rhgsl GflpR krasr RL32_SCHPO : 227- 231: gkgne GttaR wgtkr RL32_SCHPO : 270- 274: ragna GymhR tqlns RL32_SCHPO : 308- 312: ritpm GgfvR ygvve RL32_SCHPO : 329- 333: ngatp GpvkR vltlr RL3A_ARATH : 14- 18: rhgsl GflpR kranr RL3A_ARATH : 230- 234: gkgye GvvtR wgvtr RL3A_ARATH : 273- 277: ragqn GyhhR telnk RL3A_ARATH : 333- 337: kgccv GakkR vvtlr RL3B_ARATH : 14- 18: rhgsl GflpR krasr RL3B_ARATH : 230- 234: gkgye GvvtR wgvtr RL3B_ARATH : 273- 277: ragqn GyhhR temnk RL3B_ARATH : 333- 337: kgccv GpkkR vvtlr RL3B_ARATH : 368- 372: daasn GghgR fqtsq RL3_BACST : 4- 8: mtk GilgR kigmt RL3_BACST : 121- 125: gkgfq GaikR hgqsr RL3_BACSU : 74- 78: gkgfq GaikR hgqsr RL3_BOVIN : 14- 18: rhgsl GflpR krssr RL3_BOVIN : 229- 233: gkgyk GvtsR whtkk RL3_BOVIN : 272- 276: ragqk GyhhR teink RL3_BOVIN : 338- 342: kgcvv GtkkR vltlr RL3_CYAPA : 121- 125: grgfs GyqkR hnfar RL3_DICDI : 14- 18: rhgnl GfrpR kraar RL3_DICDI : 230- 234: gkgfn GvikR wgvrk RL3_DICDI : 273- 277: ragql GyhhR vernk RL3_DICDI : 337- 341: kgcva GprkR altlr RL3_ECOLI : 120- 124: gkgfa GtvkR wnfrt RL3_HAEIN : 3- 7: mi GlvgR kvgmt RL3_HAEIN : 119- 123: gkgfq GgvkR wnfrt RL3_HALHA : 12- 16: rkgsm GfspR kraes RL3_HALHA : 184- 188: gvhaf GdvfR agefa RL3_HALHA : 206- 210: gkgtq GpvkR wgvqk RL3_HALHA : 212- 216: pvkrw GvqkR kgkha RL3_HALHA : 218- 222: vqkrk GkhaR hvarr RL3_HALHA : 250- 254: qqgqt GyhqR telnk RL3_HALHA : 295- 299: kgsvp GpeqR lvrfr RL3_HALMA : 12- 16: rkgsl GfgpR krsts RL3_HALMA : 14- 18: gslgf GprkR stset RL3_HALMA : 213- 217: gkgtq GpvkR wgvqk RL3_HALMA : 219- 223: pvkrw GvqkR kgkha RL3_HALMA : 225- 229: vqkrk GkhaR qgwrr RL3_HALMA : 231- 235: kharq GwrrR ignlg RL3_HALMA : 258- 262: qqgqt GyhqR telnk RL3_HALMA : 303- 307: kgsvp GpdkR lvpfr RL3_HUMAN : 14- 18: rhgsl GflpR krssr RL3_HUMAN : 229- 233: gkgyk GvtsR whtkk RL3_HUMAN : 272- 276: ragqk GyhhR teink RL3_HUMAN : 338- 342: kgcvv GtkkR vltlr RL3_MOUSE : 14- 18: rhgsl GflpR krssr RL3_MOUSE : 229- 233: gkgyk GvtsR whtkk RL3_MOUSE : 272- 276: ragqk GyhhR teink RL3_MOUSE : 338- 342: kgcvv GtkkR vltlr RL3_MYCCA : 3- 7: mk GilgR kvemt RL3_MYCCA : 119- 123: gkgfa GgikR hnysr RL3_MYCCA : 162- 166: mpghm GnakR tiqnl RL3_MYCLE : 75- 79: qynsa GvnpR rylae RL3_ORYSA : 14- 18: rhgsl GflpR krssr RL3_ORYSA : 230- 234: gkgye GvvtR wgvtr RL3_ORYSA : 273- 277: ragqn GyhhR temnk RL3_ORYSA : 333- 337: kgccv GpkkR vvtlr RL3_RAT : 14- 18: rhgsl GflpR krssr RL3_RAT : 229- 233: gkgyk GvtsR whtkk RL3_RAT : 272- 276: ragqk GyhhR teink RL3_RAT : 338- 342: kgcvv GtkkR vltlr RL3_THEMA : 117- 121: grgfa GamkR wgfsg RL3_YEAST : 14- 18: rhghl GflpR kraas RL3_YEAST : 227- 231: ghgfe GvthR wgtkk RL3_YEAST : 270- 274: ragqr GyhsR tsinh RL3_YEAST : 329- 333: kgcip GnrkR ivtlr RL3_YERPS : 40- 44: gkgfa GtvkR wnfrt RM03_HUMAN : 27- 31: lgaal GpgnR thiwl RM03_HUMAN : 217- 221: gkgfq GvmkR wgfkg RM03_HUMAN : 246- 250: gavat GdigR vwpgt RM03_HUMAN : 262- 266: mpgkm GniyR teygl RM03_RAT : 27- 31: lgaap GlgsR knilf RM03_RAT : 217- 221: gkgfq GvmkR wgfkg RM03_RAT : 246- 250: gaist GdiaR vwpgt RM03_RAT : 262- 266: mpgkm GnqnR tvygl RM09_YEAST : 60- 64: lpkrc GlitR kkgmm RM09_YEAST : 109- 113: facqv GygsR hlskv RM09_YEAST : 179- 183: gkgft GvmkR ygfkg Number of patterns evaluated by Pratt:489 Total running time: 2 seconds