------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file RIBOSOMAL_L27E PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L27E.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: RL27_HUMAN 135 RL27_PEA 135 RL27_PYRST 134 RL27_SOLTU 138 RL27_YEAST 136 Pratt run started at Thu Feb 6 21:05:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 78.2310 5( 5) K-x(2)-K-x(1,2)-V-x(3,4)-G-x(3)-G-x-K-x-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 2: 78.2310 5( 5) K-x(2)-K-x(0,1)-V-x(4,5)-G-x(3)-G-x-K-x-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 3: 73.5609 7( 5) K-x(3,4)-V-x(2,4)-G-x(3)-G-x-K-x-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 4: 62.5508 5( 5) G-x(5)-K-x-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 5: 58.3807 5( 5) K-x-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 6: 58.3807 5( 5) G-x(3)-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 7: 57.8807 8( 5) K-x(1,2)-V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 8: 57.3807 6( 5) K-x(0,1)-A-x(0,1)-K-x(4)-K-x-F-x-K-x(2)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 9: 56.8807 10( 5) K-x(0,2)-A-x(0,1)-K-x(4)-K-x-F-x-K-x(2)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 10: 54.2107 5( 5) V-I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 11: 53.2107 5( 5) K-x(4)-K-x-F-x-K-x(0,1)-V-x(0,1)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 12: 52.7107 8( 5) K-x(0,2)-K-x(3,4)-K-x-F-x-K-x(2)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 13: 50.0406 5( 5) K-x(4)-E-x(4)-G-K-N-x-W-F-F-x-K-L-R-F 14: 50.0406 5( 5) I-V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 15: 49.5406 8( 5) K-x(3,4)-K-x-F-x-K-x(2)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 16: 49.0406 5( 5) K-x-F-x-K-x(0,1)-V-x(0,1)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 17: 49.0406 8( 5) K-x(3,4)-K-x(0,1)-F-x-K-x(2)-N-Y-x-H-x(2)-P-T-R-Y-x(2)-D 18: 48.0406 8( 5) A-x(2,4)-V-x(3,5)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V 19: 45.8706 5( 5) E-x(4)-G-K-N-x-W-F-F-x-K-L-R-F 20: 45.8706 5( 5) V-x(3)-D-x-G-x(4)-P-x(2)-H-x-L-V-x-G-x(4)-P-x-K-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 141.4050 5( 5) G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR] B 2: 137.6304 5( 5) G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K C 3: 136.6983 5( 5) K-[APS]-[GN]-K-x(1,2)-V-x(3,4)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V D 4: 136.6983 5( 5) K-[APS]-[GN]-K-x(0,1)-V-x(4,5)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V E 5: 136.6213 5( 5) V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K F 6: 136.5823 5( 5) K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F G 7: 132.4513 5( 5) I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K H 8: 128.7264 8( 5) K-x(1,2)-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST] I 9: 128.2812 5( 5) V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K J 10: 126.1361 7( 5) K-x(3,4)-V-x(2,4)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V K 11: 107.0386 8( 5) A-x(2,4)-V-x(3,5)-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV] L 12: 98.1051 6( 5) K-x(0,1)-A-x(0,1)-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] M 13: 97.6051 10( 5) K-x(0,2)-A-x(0,1)-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] N 14: 93.9350 5( 5) K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(0,1)-V-x(0,1)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] O 15: 84.3496 8( 5) K-x(0,2)-K-x(3,4)-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] P 16: 80.6796 5( 5) K-[APST]-F-[IV]-K-x(0,1)-V-x(0,1)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Q 17: 78.9795 8( 5) K-x(3,4)-K-x-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] R 18: 78.4795 8( 5) K-x(3,4)-K-x(0,1)-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] S 19: 68.2015 5( 5) K-x(2)-[FL]-[AE]-E-[KR]-[FHY]-x-[AT]-G-K-N-x-W-F-F-[QST]-K-L-R-F T 20: 57.5380 5( 5) E-[KR]-[FHY]-x-[AT]-G-K-N-x-W-F-F-[QST]-K-L-R-F Best patterns with alignements: fitness hits(seqs) Pattern A 1: 141.4050 5( 5) G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR] Occurences: 5(5) RL27_HUMAN : 15- 64: vlvla GRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKR skiks RL27_PEA : 16- 65: villq GRYAGKKAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKK srvka RL27_PYRST : 16- 65: vvvls GRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKK stlkt RL27_SOLTU : 16- 65: villq GKYAGRKAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKK srvka RL27_YEAST : 16- 65: avvvr GRYAGKKVVIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKR tkikp B 2: 137.6304 5( 5) G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K Occurences: 5(5) RL27_HUMAN : 19- 68: agrys GRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIK sfvkv RL27_PEA : 20- 69: qgrya GKKAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVK afvkl RL27_PYRST : 20- 69: sgrfa GKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLK tfikt RL27_SOLTU : 20- 69: qgkya GRKAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVK afikl RL27_YEAST : 20- 69: rgrya GKKVVIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIK pfikv C 3: 136.6983 5( 5) K-[APS]-[GN]-K-x(1,2)-V-x(3,4)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V Occurences: 5(5) RL27_HUMAN : 5- 52: gkfm KPGKv-VlvlaGRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKV taamg RL27_PEA : 6- 53: mvkfl KPNKa-VillqGRYAGKKAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKV ikkds RL27_PYRST : 6- 53: mvkfl KSGKvvVvls-GRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_PYRST : 6- 53: mvkfl KSGKv-VvvlsGRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_SOLTU : 6- 53: mekfl KPNKa-VillqGKYAGRKAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKV irkds RL27_YEAST : 6- 53: makfl KAGKvaVvvr-GRYAGKKVVIVKPhDEGSkSHPFGHALVAGIeRyPlKV tkkhg D 4: 136.6983 5( 5) K-[APS]-[GN]-K-x(0,1)-V-x(4,5)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V Occurences: 5(5) RL27_HUMAN : 5- 52: gkfm KPGKvVlvla-GRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKV taamg RL27_HUMAN : 5- 52: gkfm KPGK-VvlvlaGRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKV taamg RL27_PEA : 6- 53: mvkfl KPNKaVillq-GRYAGKKAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKV ikkds RL27_PYRST : 6- 53: mvkfl KSGKvVvvls-GRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_PYRST : 6- 53: mvkfl KSGK-VvvvlsGRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_SOLTU : 6- 53: mekfl KPNKaVillq-GKYAGRKAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKV irkds RL27_YEAST : 6- 53: makfl KAGK-VavvvrGRYAGKKVVIVKPhDEGSkSHPFGHALVAGIeRyPlKV tkkhg E 5: 136.6213 5( 5) V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K Occurences: 5(5) RL27_HUMAN : 23- 72: sgrka VIVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIKSFVK vynyn RL27_PEA : 24- 73: agkka VIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKAFVK lvnyq RL27_PYRST : 24- 73: agkka VIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKTFIK tvnyn RL27_SOLTU : 24- 73: agrka VIVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVKAFIK lvnyn RL27_YEAST : 24- 73: agkkv VIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKPFIK vvnyn F 6: 136.5823 5( 5) K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F Occurences: 5(5) RL27_HUMAN : 21- 70: rysgr KAVIVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIKSF vkvyn RL27_PEA : 22- 71: ryagk KAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKAF vklvn RL27_PYRST : 22- 71: rfagk KAVIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKTF iktvn RL27_SOLTU : 22- 71: kyagr KAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVKAF iklvn RL27_YEAST : 22- 71: ryagk KVVIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKPF ikvvn G 7: 132.4513 5( 5) I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K Occurences: 5(5) RL27_HUMAN : 24- 72: grkav IVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIKSFVK vynyn RL27_PEA : 25- 73: gkkav IVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKAFVK lvnyq RL27_PYRST : 25- 73: gkkav IVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKTFIK tvnyn RL27_SOLTU : 25- 73: grkav IVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVKAFIK lvnyn RL27_YEAST : 25- 73: gkkvv IVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKPFIK vvnyn H 8: 128.7264 8( 5) K-x(1,2)-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST] Occurences: 8(5) RL27_HUMAN : 21- 69: rysgr Ka-VIVKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIKS fvkvy RL27_PEA : 21- 70: gryag KkaVIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKA fvklv RL27_PEA : 22- 70: ryagk Ka-VIVKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKA fvklv RL27_PYRST : 21- 70: grfag KkaVIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKT fiktv RL27_PYRST : 22- 70: rfagk Ka-VIVRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKT fiktv RL27_SOLTU : 22- 70: kyagr Ka-VIVRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVKA fiklv RL27_YEAST : 21- 70: gryag KkvVIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKP fikvv RL27_YEAST : 22- 70: ryagk Kv-VIVKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKP fikvv I 9: 128.2812 5( 5) V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K Occurences: 5(5) RL27_HUMAN : 25- 72: rkavi VKNiDDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkIKSFVK vynyn RL27_PEA : 26- 73: kkavi VKTfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrVKAFVK lvnyq RL27_PYRST : 26- 73: kkavi VRNfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStLKTFIK tvnyn RL27_SOLTU : 26- 73: rkavi VRAfDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrVKAFIK lvnyn RL27_YEAST : 26- 73: kkvvi VKPhDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkIKPFIK vvnyn J 10: 126.1361 7( 5) K-x(3,4)-V-x(2,4)-G-[KR]-[FY]-[AS]-G-[KR]-K-[AV]-V-I-V-[KR]-[ANPT]-x-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V Occurences: 7(5) RL27_HUMAN : 5- 52: gkfm KpgkvVlvlaGRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKV taamg RL27_HUMAN : 8- 52: fmkpg Kvvl-Vla--GRYSGRKAVIVKNiDDGTsDRPYSHALVAGIdRyPrKV taamg RL27_PEA : 6- 53: mvkfl KpnkaVillqGRYAGKKAVIVKTfDDGTrEKPYGHCLVAGIkKfPsKV ikkds RL27_PYRST : 6- 53: mvkfl KsgkvVvvlsGRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_PYRST : 9- 53: flksg Kvvv-Vls--GRFAGKKAVIVRNfDDGTsSRPYGHALVVGLqKePrKV tkrqs RL27_SOLTU : 6- 53: mekfl KpnkaVillqGKYAGRKAVIVRAfDEGTrDRPYGHCLVAGIsRyPkKV irkds RL27_YEAST : 9- 53: flkag Kvav-Vvr--GRYAGKKVVIVKPhDEGSkSHPFGHALVAGIeRyPlKV tkkhg K 11: 107.0386 8( 5) A-x(2,4)-V-x(3,5)-D-[DE]-G-[ST]-x-[DES]-[HKR]-P-[FY]-[GS]-H-[AC]-L-V-[AV]-G-[IL]-x-[KR]-x-P-x-K-V-x(4)-[GS]-x-K-K-x-[AG]-K-[KR]-[ST]-x-[ILV] Occurences: 8(5) RL27_HUMAN : 22- 67: ysgrk Avi--Vkni--DDGTsDRPYSHALVAGIdRyPrKVtaamGkKKiAKRSkI ksfvk RL27_PEA : 19- 68: lqgry AgkkaVivktfDDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrV kafvk RL27_PEA : 23- 68: yagkk Avi--Vktf--DDGTrEKPYGHCLVAGIkKfPsKVikkdSaKKtAKKSrV kafvk RL27_PYRST : 19- 68: lsgrf AgkkaVivrnfDDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStL ktfik RL27_PYRST : 23- 68: fagkk Avi--Vrnf--DDGTsSRPYGHALVVGLqKePrKVtkrqSqKKqAKKStL ktfik RL27_SOLTU : 19- 68: lqgky AgrkaVivrafDEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrV kafik RL27_SOLTU : 23- 68: yagrk Avi--Vraf--DEGTrDRPYGHCLVAGIsRyPkKVirkdSaKKaGKKSrV kafik RL27_YEAST : 19- 68: vrgry AgkkvVivkphDEGSkSHPFGHALVAGIeRyPlKVtkkhGaKKvAKRTkI kpfik L 12: 98.1051 6( 5) K-x(0,1)-A-x(0,1)-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 6(5) RL27_HUMAN : 60- 96: amgkk KiA-KRSkIKSFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 61- 97: kdsak KtA-KKSrVKAFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 61- 97: rqsqk KqA-KKStLKTFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 60- 97: rkdsa KkAgKKSrVKAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_SOLTU : 61- 97: kdsak K-AgKKSrVKAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 61- 97: khgak KvA-KRTkIKPFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe M 13: 97.6051 10( 5) K-x(0,2)-A-x(0,1)-K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 10(5) RL27_HUMAN : 59- 96: aamgk KkiA-KRSkIKSFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_HUMAN : 60- 96: amgkk Ki-A-KRSkIKSFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 60- 97: kkdsa KktA-KKSrVKAFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PEA : 61- 97: kdsak Kt-A-KKSrVKAFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 60- 97: krqsq KkqA-KKStLKTFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_PYRST : 61- 97: rqsqk Kq-A-KKStLKTFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 60- 97: rkdsa Kk-AgKKSrVKAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_SOLTU : 61- 97: kdsak K--AgKKSrVKAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 60- 97: kkhga KkvA-KRTkIKPFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe RL27_YEAST : 61- 97: khgak Kv-A-KRTkIKPFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe N 14: 93.9350 5( 5) K-[KR]-[ST]-x-[ILV]-K-[APST]-F-[IV]-K-x(0,1)-V-x(0,1)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 5(5) RL27_HUMAN : 63- 96: kkkia KRSkIKSFVK-VyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 64- 97: akkta KKSrVKAFVKlV-NYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 64- 97: qkkqa KKStLKTFIKtV-NYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 64- 97: akkag KKSrVKAFIKlV-NYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 64- 97: akkva KRTkIKPFIKvV-NYNHLLPTRYTLDvEafkSVvS tetfe RL27_YEAST : 64- 97: akkva KRTkIKPFIK-VvNYNHLLPTRYTLDvEafkSVvS tetfe O 15: 84.3496 8( 5) K-x(0,2)-K-x(3,4)-K-[APST]-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 8(5) RL27_HUMAN : 60- 96: amgkk KiaKrskiKSFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 61- 97: kdsak KtaKksrvKAFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PEA : 64- 97: akkta K--Ksrv-KAFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 61- 97: rqsqk KqaKkstlKTFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_PYRST : 64- 97: qkkqa K--Kstl-KTFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 61- 97: kdsak KagKksrvKAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_SOLTU : 64- 97: akkag K--Ksrv-KAFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 61- 97: khgak KvaKrtkiKPFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe P 16: 80.6796 5( 5) K-[APST]-F-[IV]-K-x(0,1)-V-x(0,1)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 5(5) RL27_HUMAN : 68- 96: krski KSFVK-VyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 69- 97: kksrv KAFVKlV-NYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 69- 97: kkstl KTFIKtV-NYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 69- 97: kksrv KAFIKlV-NYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 69- 97: krtki KPFIKvV-NYNHLLPTRYTLDvEafkSVvS tetfe RL27_YEAST : 69- 97: krtki KPFIK-VvNYNHLLPTRYTLDvEafkSVvS tetfe Q 17: 78.9795 8( 5) K-x(3,4)-K-x-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 8(5) RL27_HUMAN : 63- 96: kkkia KrskiKsFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 64- 97: akkta KksrvKaFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PEA : 65- 97: kktak Ksrv-KaFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 64- 97: qkkqa KkstlKtFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_PYRST : 65- 97: kkqak Kstl-KtFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 64- 97: akkag KksrvKaFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_SOLTU : 65- 97: kkagk Ksrv-KaFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 64- 97: akkva KrtkiKpFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe R 18: 78.4795 8( 5) K-x(3,4)-K-x(0,1)-F-[IV]-K-x(2)-N-Y-[NQ]-H-[IL]-[LM]-P-T-R-Y-[ST]-[LV]-D-x-[DEP]-x(3)-[ASTV]-[AV]-x-[DENPS] Occurences: 8(5) RL27_HUMAN : 63- 96: kkkia KrskiKsFVKvyNYNHLMPTRYSVDiPldkTVvN kdvfr RL27_PEA : 64- 97: akkta KksrvKaFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PEA : 65- 97: kktak Ksrv-KaFVKlvNYQHLMPTRYTLDvDlkdAVvP dvlqs RL27_PYRST : 64- 97: qkkqa KkstlKtFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_PYRST : 65- 97: kkqak Kstl-KtFIKtvNYNHLMPTRYTLDvDfkgVAaE aqenp RL27_SOLTU : 64- 97: akkag KksrvKaFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_SOLTU : 65- 97: kkagk Ksrv-KaFIKlvNYNHIMPTRYTLDeDlkdVVkD vvnad RL27_YEAST : 64- 97: akkva KrtkiKpFIKvvNYNHLLPTRYTLDvEafkSVvS tetfe S 19: 68.2015 5( 5) K-x(2)-[FL]-[AE]-E-[KR]-[FHY]-x-[AT]-G-K-N-x-W-F-F-[QST]-K-L-R-F Occurences: 5(5) RL27_HUMAN : 114- 135: arrea KvkFEERYkTGKNkWFFQKLRF RL27_PEA : 114- 135: alket KksLEERFkTGKNrWFFTKLRF RL27_PYRST : 113- 134: arkec KklLEEKFkTGKNrWFFTKLRF RL27_SOLTU : 117- 138: tarrt KarLAERFkTGKNrWFFTKLRF RL27_YEAST : 115- 136: akkvv KkaFEERHqAGKNqWFFSKLRF T 20: 57.5380 5( 5) E-[KR]-[FHY]-x-[AT]-G-K-N-x-W-F-F-[QST]-K-L-R-F Occurences: 5(5) RL27_HUMAN : 119- 135: kvkfe ERYkTGKNkWFFQKLRF RL27_PEA : 119- 135: kksle ERFkTGKNrWFFTKLRF RL27_PYRST : 118- 134: kklle EKFkTGKNrWFFTKLRF RL27_SOLTU : 122- 138: karla ERFkTGKNrWFFTKLRF RL27_YEAST : 120- 136: kkafe ERHqAGKNqWFFSKLRF Number of patterns evaluated by Pratt:3836 Total running time: 1 seconds