------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file RIBOSOMAL_L24 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename RIBOSOMAL_L24.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: R24P_SULSO 152 RL24_ACYKS 104 RL24_BACST 103 RL24_BACSU 103 RL24_CHLTR 111 RL24_ECOLI 103 RL24_HAEIN 103 RL24_MICLU 113 RL24_MYCCA 108 RL24_PEA 194 RL24_PROVU 18 RL24_SALTY 18 RL24_SPIOL 191 RL24_THEMA 105 RL24_THETH 110 RL24_TOBAC 187 Pratt run started at Thu Feb 6 21:05:51 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 17( 16) V-R-x(2,4)-K 2: 11.5102 28( 16) K-x(0,1)-V-x(0,1)-R 3: 11.0102 24( 16) K-x(0,2)-K-x(0,1)-R 4: 10.5102 34( 16) G-x(1,3)-K-x(0,2)-V 5: 8.3401 27( 16) D-x(2)-K 6: 8.3401 28( 16) D-x(3)-V 7: 8.3401 21( 16) E-x(3)-K 8: 7.8401 36( 16) E-x(2,3)-K 9: 7.8401 40( 16) R-x(2,3)-K 10: 7.8401 32( 16) D-x(1,2)-K 11: 7.8401 32( 16) E-x(0,1)-G 12: 7.3401 50( 16) K-x(3,5)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.5102 17( 16) V-R-x(2,4)-K B 2: 11.5102 28( 16) K-x(0,1)-V-x(0,1)-R C 3: 11.0102 24( 16) K-x(0,2)-K-x(0,1)-R D 4: 10.5114 21( 16) R-x(2,3)-K-[ACDGNSTV]-[CDGNSTV] E 5: 10.5102 34( 16) G-x(1,3)-K-x(0,2)-V F 6: 8.3401 27( 16) D-x(2)-K G 7: 8.3401 28( 16) D-x(3)-V H 8: 8.3401 21( 16) E-x(3)-K I 9: 7.8401 36( 16) E-x(2,3)-K J 10: 7.8401 32( 16) D-x(1,2)-K K 11: 7.8401 32( 16) E-x(0,1)-G L 12: 7.3401 50( 16) K-x(3,5)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.5102 17( 16) V-R-x(2,4)-K Occurences: 17(16) R24P_SULSO : 118- 124: mqaqv VRvestK nevvl RL24_ACYKS : 93- 97: edgkk VRff--K snsgt RL24_BACST : 91- 95: vdgkk VRya--K ksgei RL24_BACST : 91- 96: vdgkk VRyak-K sgeil RL24_BACSU : 91- 95: edgkk VRva--K ksgqv RL24_BACSU : 91- 96: edgkk VRvak-K sgqvl RL24_CHLTR : 41- 47: vegin VRvkniK rsqen RL24_CHLTR : 106- 110: slyrl VRer--K g RL24_ECOLI : 92- 96: edgkk VRff--K snset RL24_HAEIN : 93- 97: edgkk VRff--K snnei RL24_MICLU : 103- 107: tktvk VRfa--K asgke RL24_MYCCA : 94- 99: idgkk VRiar-K sktqi RL24_PEA : 162- 167: engkr VRyli-K tgeii RL24_PROVU : 7- 11: edgkk VRff--K snket RL24_SALTY : 7- 11: edgkk VRff--K snset RL24_SPIOL : 158- 163: edvrk VRyli-K tgeiv RL24_THEMA : 92- 96: edgkk VRyc--K kcgei RL24_THEMA : 92- 97: edgkk VRyck-K cgeii RL24_THETH : 49- 54: lvkka VRpsp-K hpqgg RL24_TOBAC : 153- 158: dngkr VRyli-K tgeii B 2: 11.5102 28( 16) K-x(0,1)-V-x(0,1)-R Occurences: 28(16) R24P_SULSO : 148- 152: pleqv KpVkR RL24_ACYKS : 91- 94: rfedg KkV-R ffksn RL24_ACYKS : 92- 94: fedgk K-V-R ffksn RL24_BACST : 89- 92: kivdg KkV-R yakks RL24_BACST : 90- 92: ivdgk K-V-R yakks RL24_BACSU : 89- 92: kvedg KkV-R vakks RL24_BACSU : 90- 92: vedgk K-V-R vakks RL24_CHLTR : 25- 28: kgkqg K-VlR clkdk RL24_ECOLI : 90- 93: rfedg KkV-R ffksn RL24_ECOLI : 91- 93: fedgk K-V-R ffksn RL24_HAEIN : 91- 94: rfedg KkV-R ffksn RL24_HAEIN : 92- 94: fedgk K-V-R ffksn RL24_MICLU : 23- 26: kgkqg K-VlR vfptd RL24_MICLU : 102- 104: vtktv K-V-R fakas RL24_MYCCA : 92- 95: eiidg KkV-R iarks RL24_MYCCA : 93- 95: iidgk K-V-R iarks RL24_PEA : 160- 163: vleng KrV-R ylikt RL24_PROVU : 5- 8: fedg KkV-R ffksn RL24_PROVU : 6- 8: fedgk K-V-R ffksn RL24_SALTY : 5- 8: fedg KkV-R ffksn RL24_SALTY : 6- 8: fedgk K-V-R ffksn RL24_SPIOL : 157- 159: ledvr K-V-R ylikt RL24_THEMA : 22- 25: kgkrg K-VlR vipke RL24_THEMA : 90- 93: ftedg KkV-R yckkc RL24_THEMA : 91- 93: tedgk K-V-R yckkc RL24_THETH : 47- 50: vnlvk KaV-R pspkh RL24_THETH : 71- 73: plhas K-V-R picpa RL24_TOBAC : 151- 154: tldng KrV-R ylikt C 3: 11.0102 24( 16) K-x(0,2)-K-x(0,1)-R Occurences: 24(16) R24P_SULSO : 148- 152: pleqv KpvK-R RL24_ACYKS : 19- 22: itgkd Kg-K-R gkvkn RL24_ACYKS : 91- 94: rfedg K--KvR ffksn RL24_BACST : 29- 32: laafp K--KnR viveg RL24_BACST : 89- 92: kivdg K--KvR yakks RL24_BACSU : 29- 32: laafp K--KdR vlveg RL24_BACSU : 89- 92: kvedg K--KvR vakks RL24_CHLTR : 44- 48: invrv KniK-R sqenp RL24_CHLTR : 54- 57: sqenp Kg-K-R iniea RL24_ECOLI : 18- 21: ltgkd Kg-K-R gkvkn RL24_ECOLI : 90- 93: rfedg K--KvR ffksn RL24_HAEIN : 19- 22: ltgkd Kg-K-R gkvtk RL24_HAEIN : 91- 94: rfedg K--KvR ffksn RL24_MICLU : 99- 104: kdgvt KtvKvR fakas RL24_MYCCA : 92- 95: eiidg K--KvR iarks RL24_PEA : 51- 54: clivm Kl-K-R werke RL24_PROVU : 5- 8: fedg K--KvR ffksn RL24_SALTY : 5- 8: fedg K--KvR ffksn RL24_SPIOL : 63- 67: pnslp KlhK-R hvkvg RL24_THEMA : 17- 20: isgkd Kg-K-R gkvlr RL24_THEMA : 90- 93: ftedg K--KvR yckkc RL24_THETH : 19- 23: lvasg Ky-KgR vgkvk RL24_TOBAC : 42- 45: cliqa Kl-K-R werke RL24_TOBAC : 104- 109: vnlkt KhvKsR sedep D 4: 10.5114 21( 16) R-x(2,3)-K-[ACDGNSTV]-[CDGNSTV] Occurences: 21(16) R24P_SULSO : 69- 74: issgi Rhv-KGV ahgli RL24_ACYKS : 22- 28: kdkgk RgkvKNV lssgk RL24_ACYKS : 94- 99: dgkkv Rff-KSN sgtik RL24_BACST : 92- 98: dgkkv RyakKSG eildk RL24_BACSU : 92- 98: dgkkv RvakKSG qvldk RL24_CHLTR : 79- 85: dnqpa RlfvKVT ekgre RL24_ECOLI : 21- 27: kdkgk RgkvKNV lssgk RL24_ECOLI : 93- 98: dgkkv Rff-KSN setik RL24_HAEIN : 94- 99: dgkkv Rff-KSN neii RL24_MICLU : 104- 109: ktvkv Rfa-KAS gkel RL24_MYCCA : 5- 10: maks Ril-KGD vvkvi RL24_PEA : 163- 169: ngkrv RyliKTG eiids RL24_PROVU : 8- 13: dgkkv Rff-KSN ketik RL24_SALTY : 8- 13: dgkkv Rff-KSN setik RL24_SPIOL : 50- 56: vmrik RwerKDC kpnsl RL24_SPIOL : 67- 72: pklhk Rhv-KVG dtvkv RL24_SPIOL : 159- 165: dvrkv RyliKTG eivdt RL24_THEMA : 2- 7: m Rik-KGD lvevi RL24_THEMA : 93- 99: dgkkv RyckKCG eiidk RL24_THETH : 97- 103: dgrki RacaKCG gsldv RL24_TOBAC : 154- 160: ngkrv RyliKTG eiids E 5: 10.5102 34( 16) G-x(1,3)-K-x(0,2)-V Occurences: 34(16) R24P_SULSO : 77- 84: kgvah GliqKedV tkfvs RL24_ACYKS : 20- 25: tgkdk GkrgK--V knvls RL24_ACYKS : 23- 28: dkgkr Gkv-Kn-V lssgk RL24_ACYKS : 90- 93: frfed Gk--K--V rffks RL24_BACST : 6- 9: mhvkk Gd--K--V qvisg RL24_BACST : 6- 11: mhvkk Gd--KvqV isgkd RL24_BACST : 82- 86: eptri Gy--Ki-V dgkkv RL24_BACST : 88- 91: ykivd Gk--K--V ryakk RL24_BACSU : 6- 9: mhvkk Gd--K--V mvisg RL24_BACSU : 6- 11: mhvkk Gd--KvmV isgkd RL24_BACSU : 82- 85: evtrv Gy--K--V edgkk RL24_BACSU : 88- 91: ykved Gk--K--V rvakk RL24_BACSU : 88- 93: ykved Gk--KvrV akksg RL24_CHLTR : 21- 26: agndk GkqgK--V lrclk RL24_ECOLI : 19- 24: tgkdk GkrgK--V knvls RL24_ECOLI : 22- 27: dkgkr Gkv-Kn-V lssgk RL24_ECOLI : 89- 92: frfed Gk--K--V rffks RL24_HAEIN : 20- 25: tgkdk GkrgK--V tkvlp RL24_HAEIN : 23- 28: dkgkr GkvtK--V lpngk RL24_HAEIN : 90- 93: frfed Gk--K--V rffks RL24_MICLU : 19- 24: sgkdk GkqgK--V lrvfp RL24_MICLU : 96- 101: tvekd Gvt-Kt-V kvrfa RL24_MYCCA : 9- 14: srilk GdvvK--V iagsh RL24_MYCCA : 40- 47: wvsvq GitvKkhV kptne RL24_MYCCA : 91- 94: feiid Gk--K--V riark RL24_PEA : 76- 81: lhvkv GdtvK--V isghe RL24_PEA : 124- 129: qegep GqinK--V eapih RL24_PEA : 152- 155: vtsrv Gh--K--V lengk RL24_PROVU : 4- 7: fed Gk--K--V rffks RL24_SALTY : 4- 7: fed Gk--K--V rffks RL24_SPIOL : 72- 77: rhvkv GdtvK--V isgge RL24_THEMA : 18- 23: sgkdk GkrgK--V lrvip RL24_THEMA : 89- 92: rfted Gk--K--V ryckk RL24_THETH : 18- 24: vlvas Gky-KgrV gkvka RL24_THETH : 22- 27: sgkyk GrvgK--V kavlp RL24_THETH : 25- 30: ykgrv Gkv-Ka-V lprkm RL24_TOBAC : 75- 81: vkiis Ghd-KgkV geite F 6: 8.3401 27( 16) D-x(2)-K Occurences: 27(16) R24P_SULSO : 83- 86: liqke DvtK fvsks RL24_ACYKS : 18- 21: vitgk DkgK rgkvk RL24_ACYKS : 89- 92: gfrfe DgkK vrffk RL24_BACST : 16- 19: visgk DkgK qgvil RL24_BACST : 87- 90: gykiv DgkK vryak RL24_BACSU : 16- 19: visgk DkgK qgtil RL24_BACSU : 87- 90: gykve DgkK vrvak RL24_CHLTR : 19- 22: vlagn DkgK qgkvl RL24_ECOLI : 17- 20: vltgk DkgK rgkvk RL24_ECOLI : 88- 91: gfrfe DgkK vrffk RL24_HAEIN : 18- 21: vltgk DkgK rgkvt RL24_HAEIN : 89- 92: gfrfe DgkK vrffk RL24_MICLU : 17- 20: visgk DkgK qgkvl RL24_MYCCA : 10- 13: rilkg DvvK viags RL24_MYCCA : 90- 93: gfeii DgkK vriar RL24_PEA : 77- 80: hvkvg DtvK visgh RL24_PROVU : 3- 6: fe DgkK vrffk RL24_SALTY : 3- 6: fe DgkK vrffk RL24_SPIOL : 73- 76: hvkvg DtvK visgg RL24_SPIOL : 154- 157: hkile DvrK vryli RL24_SPIOL : 172- 175: ivdtp DrwK eiqnk RL24_THEMA : 16- 19: visgk DkgK rgkvl RL24_THEMA : 88- 91: yrfte DgkK vryck RL24_THETH : 92- 95: kkfle DgrK iraca RL24_TOBAC : 68- 71: hvklg DtvK iisgh RL24_TOBAC : 77- 80: iisgh DkgK vgeit RL24_TOBAC : 148- 151: ghktl DngK rvryl G 7: 8.3401 28( 16) D-x(3)-V Occurences: 28(16) R24P_SULSO : 101- 105: avkeg DlveV isgpf RL24_ACYKS : 9- 13: kirre DeviV itgkd RL24_ACYKS : 89- 93: gfrfe DgkkV rffks RL24_BACST : 7- 11: hvkkg DkvqV isgkd RL24_BACST : 87- 91: gykiv DgkkV ryakk RL24_BACSU : 7- 11: hvkkg DkvmV isgkd RL24_BACSU : 31- 35: afpkk DrvlV egvnm RL24_BACSU : 87- 91: gykve DgkkV rvakk RL24_CHLTR : 10- 14: svcvg DtvyV lagnd RL24_CHLTR : 32- 36: lrclk DkvvV eginv RL24_ECOLI : 8- 12: kirrd DeviV ltgkd RL24_ECOLI : 88- 92: gfrfe DgkkV rffks RL24_HAEIN : 9- 13: kirqn DeviV ltgkd RL24_HAEIN : 66- 70: keaai DasnV aifnp RL24_HAEIN : 89- 93: gfrfe DgkkV rffks RL24_MICLU : 8- 12: kikkd DlvqV isgkd RL24_MYCCA : 10- 14: rilkg DvvkV iagsh RL24_MYCCA : 32- 36: tsitk DkqwV svqgi RL24_MYCCA : 90- 94: gfeii DgkkV riark RL24_PEA : 77- 81: hvkvg DtvkV isghe RL24_PROVU : 3- 7: fe DgkkV rffks RL24_SALTY : 3- 7: fe DgkkV rffks RL24_SPIOL : 73- 77: hvkvg DtvkV isgge RL24_SPIOL : 154- 158: hkile DvrkV rylik RL24_THEMA : 7- 11: rikkg DlveV isgkd RL24_THEMA : 88- 92: yrfte DgkkV ryckk RL24_THETH : 11- 15: hvkkg DtvlV asgky RL24_TOBAC : 77- 81: iisgh DkgkV geite H 8: 8.3401 21( 16) E-x(3)-K Occurences: 21(16) R24P_SULSO : 27- 31: valil EeriK tnnin R24P_SULSO : 82- 86: gliqk EdvtK fvsks RL24_ACYKS : 88- 92: vgfrf EdgkK vrffk RL24_BACST : 99- 103: akksg EildK RL24_BACSU : 86- 90: vgykv EdgkK vrvak RL24_CHLTR : 90- 94: tekgr ElwnK hsdgs RL24_ECOLI : 87- 91: vgfrf EdgkK vrffk RL24_HAEIN : 88- 92: vgfrf EdgkK vrffk RL24_MICLU : 90- 94: vgyrf EtveK dgvtk RL24_MYCCA : 55- 59: tneds EggiK dipak RL24_PEA : 175- 179: eiids EenwK klkea RL24_PEA : 176- 180: iidse EnwkK lkean RL24_PEA : 183- 187: wkklk EankK taeva RL24_PROVU : 2- 6: f EdgkK vrffk RL24_SALTY : 2- 6: f EdgkK vrffk RL24_SPIOL : 153- 157: ghkil EdvrK vryli RL24_SPIOL : 176- 180: pdrwk EiqnK keset RL24_THEMA : 87- 91: gyrft EdgkK vryck RL24_THEMA : 100- 104: ckkcg EiidK d RL24_THETH : 91- 95: rkkfl EdgrK iraca RL24_TOBAC : 167- 171: iidsa EnwkK avkek I 9: 7.8401 36( 16) E-x(2,3)-K Occurences: 36(16) R24P_SULSO : 2- 5: m Edf-K yrnyy R24P_SULSO : 27- 31: valil EeriK tnnin R24P_SULSO : 28- 31: alile Eri-K tnnin R24P_SULSO : 82- 86: gliqk EdvtK fvsks R24P_SULSO : 121- 124: qvvrv Est-K nevvl R24P_SULSO : 145- 148: vtvpl Eqv-K pvkr RL24_ACYKS : 88- 91: vgfrf Edg-K kvrff RL24_ACYKS : 88- 92: vgfrf EdgkK vrffk RL24_BACST : 99- 103: akksg EildK RL24_BACSU : 86- 89: vgykv Edg-K kvrva RL24_BACSU : 86- 90: vgykv EdgkK vrvak RL24_CHLTR : 51- 54: ikrsq Enp-K gkrin RL24_CHLTR : 90- 94: tekgr ElwnK hsdgs RL24_ECOLI : 87- 90: vgfrf Edg-K kvrff RL24_ECOLI : 87- 91: vgfrf EdgkK vrffk RL24_ECOLI : 100- 103: fksns Eti-K RL24_HAEIN : 88- 91: vgfrf Edg-K kvrff RL24_HAEIN : 88- 92: vgfrf EdgkK vrffk RL24_MICLU : 78- 81: avvdp Etk-K ptrvg RL24_MICLU : 90- 94: vgyrf EtveK dgvtk RL24_MYCCA : 55- 59: tneds EggiK dipak RL24_PEA : 92- 95: kgqig Eit-K ifkhn RL24_PEA : 157- 160: ghkvl Eng-K rvryl RL24_PEA : 175- 179: eiids EenwK klkea RL24_PEA : 176- 179: iidse Enw-K klkea RL24_PEA : 176- 180: iidse EnwkK lkean RL24_PEA : 183- 186: wkklk Ean-K ktaev RL24_PEA : 183- 187: wkklk EankK taeva RL24_PROVU : 2- 5: f Edg-K kvrff RL24_PROVU : 2- 6: f EdgkK vrffk RL24_PROVU : 15- 18: fksnk Eti-K RL24_SALTY : 2- 5: f Edg-K kvrff RL24_SALTY : 2- 6: f EdgkK vrffk RL24_SALTY : 15- 18: fksns Eti-K RL24_SPIOL : 82- 85: visgg Ekg-K igeis RL24_SPIOL : 88- 91: kgkig Eis-K ihkhn RL24_SPIOL : 153- 157: ghkil EdvrK vryli RL24_SPIOL : 176- 180: pdrwk EiqnK keset RL24_THEMA : 87- 90: gyrft Edg-K kvryc RL24_THEMA : 87- 91: gyrft EdgkK vryck RL24_THEMA : 100- 104: ckkcg EiidK d RL24_THETH : 91- 95: rkkfl EdgrK iraca RL24_TOBAC : 86- 89: vgeit Eii-K hnskv RL24_TOBAC : 167- 170: iidsa Enw-K kavke RL24_TOBAC : 167- 171: iidsa EnwkK avkek RL24_TOBAC : 175- 178: kkavk Eke-K tteav J 10: 7.8401 32( 16) D-x(1,2)-K Occurences: 32(16) R24P_SULSO : 3- 5: me Df-K yrnyy R24P_SULSO : 83- 86: liqke DvtK fvsks RL24_ACYKS : 18- 21: vitgk DkgK rgkvk RL24_ACYKS : 89- 91: gfrfe Dg-K kvrff RL24_ACYKS : 89- 92: gfrfe DgkK vrffk RL24_BACST : 16- 19: visgk DkgK qgvil RL24_BACST : 72- 74: kvmpl Dp-K tgept RL24_BACST : 87- 89: gykiv Dg-K kvrya RL24_BACST : 87- 90: gykiv DgkK vryak RL24_BACSU : 16- 19: visgk DkgK qgtil RL24_BACSU : 72- 74: nvmpl Dp-K tgevt RL24_BACSU : 87- 89: gykve Dg-K kvrva RL24_BACSU : 87- 90: gykve DgkK vrvak RL24_CHLTR : 19- 22: vlagn DkgK qgkvl RL24_ECOLI : 17- 20: vltgk DkgK rgkvk RL24_ECOLI : 88- 90: gfrfe Dg-K kvrff RL24_ECOLI : 88- 91: gfrfe DgkK vrffk RL24_HAEIN : 18- 21: vltgk DkgK rgkvt RL24_HAEIN : 89- 91: gfrfe Dg-K kvrff RL24_HAEIN : 89- 92: gfrfe DgkK vrffk RL24_MICLU : 17- 20: visgk DkgK qgkvl RL24_MYCCA : 10- 13: rilkg DvvK viags RL24_MYCCA : 74- 76: nvalq Dp-K nkdqv RL24_MYCCA : 90- 92: gfeii Dg-K kvria RL24_MYCCA : 90- 93: gfeii DgkK vriar RL24_PEA : 77- 80: hvkvg DtvK visgh RL24_PROVU : 3- 5: fe Dg-K kvrff RL24_PROVU : 3- 6: fe DgkK vrffk RL24_SALTY : 3- 5: fe Dg-K kvrff RL24_SALTY : 3- 6: fe DgkK vrffk RL24_SPIOL : 55- 57: rwerk Dc-K pnslp RL24_SPIOL : 73- 76: hvkvg DtvK visgg RL24_SPIOL : 154- 157: hkile DvrK vryli RL24_SPIOL : 172- 175: ivdtp DrwK eiqnk RL24_THEMA : 16- 19: visgk DkgK rgkvl RL24_THEMA : 88- 90: yrfte Dg-K kvryc RL24_THEMA : 88- 91: yrfte DgkK vryck RL24_THETH : 92- 95: kkfle DgrK iraca RL24_TOBAC : 68- 71: hvklg DtvK iisgh RL24_TOBAC : 77- 80: iisgh DkgK vgeit RL24_TOBAC : 148- 151: ghktl DngK rvryl K 11: 7.8401 32( 16) E-x(0,1)-G Occurences: 32(16) R24P_SULSO : 99- 100: lpavk E-G dlvev RL24_ACYKS : 37- 38: gkviv E-G inlvk RL24_ACYKS : 88- 90: vgfrf EdG kkvrf RL24_BACST : 36- 37: nrviv E-G vnivk RL24_BACSU : 36- 37: drvlv E-G vnmvk RL24_BACSU : 86- 88: vgykv EdG kkvrv RL24_CHLTR : 37- 38: dkvvv E-G invrv RL24_CHLTR : 86- 88: fvkvt EkG relwn RL24_ECOLI : 36- 37: gkviv E-G inlvk RL24_ECOLI : 87- 89: vgfrf EdG kkvrf RL24_HAEIN : 37- 38: gkvfv E-G iniit RL24_HAEIN : 88- 90: vgfrf EdG kkvrf RL24_MICLU : 37- 38: ervlv E-G vnrvt RL24_MICLU : 57- 58: nngst E-G glqvv RL24_MICLU : 57- 59: nngst EgG lqvve RL24_MYCCA : 55- 56: tneds E-G gikdi RL24_MYCCA : 55- 57: tneds EgG ikdip RL24_PEA : 86- 88: visgh EkG qigei RL24_PEA : 120- 121: vksnq E-G epgqi RL24_PEA : 122- 124: snqeg EpG qinkv RL24_PEA : 157- 159: ghkvl EnG krvry RL24_PROVU : 2- 4: f EdG kkvrf RL24_SALTY : 2- 4: f EdG kkvrf RL24_SPIOL : 37- 38: lqvkt E-G hspcl RL24_SPIOL : 82- 84: visgg EkG kigei RL24_SPIOL : 115- 117: hvksk EeG eqgqi RL24_SPIOL : 116- 117: vkske E-G eqgqi RL24_SPIOL : 118- 120: skeeg EqG qiiki RL24_THEMA : 53- 54: vpqlr E-G giier RL24_THEMA : 53- 55: vpqlr EgG iiere RL24_THEMA : 87- 89: gyrft EdG kkvry RL24_THETH : 40- 41: maviv E-G vnlvk RL24_THETH : 91- 93: rkkfl EdG rkira RL24_TOBAC : 34- 35: lvkst E-G pcliq RL24_TOBAC : 113- 115: srsed EpG qivki L 12: 7.3401 50( 16) K-x(3,5)-E Occurences: 50(16) R24P_SULSO : 31- 37: leeri KtnninE ifsvv R24P_SULSO : 48- 54: vppni KgyvilE atgph R24P_SULSO : 98- 104: alpav KegdlvE visgp RL24_ACYKS : 4- 8: maa Kirr--E deviv RL24_ACYKS : 4- 10: maa KirredE vivit RL24_ACYKS : 33- 37: vlssg Kviv--E ginlv RL24_BACST : 30- 36: aafpk KnrvivE gvniv RL24_BACST : 95- 99: kvrya Kksg--E ildk RL24_BACSU : 30- 36: aafpk KdrvlvE gvnmv RL24_CHLTR : 31- 37: vlrcl KdkvvvE ginvr RL24_CHLTR : 33- 37: rclkd Kvvv--E ginvr RL24_CHLTR : 47- 51: rvkni Krsq--E npkgk RL24_CHLTR : 56- 61: enpkg Krini-E aplhi RL24_ECOLI : 3- 9: aa KirrddE vivlt RL24_ECOLI : 32- 36: vlssg Kviv--E ginlv RL24_ECOLI : 96- 100: kvrff Ksns--E tik RL24_HAEIN : 4- 10: mpa KirqndE vivlt RL24_HAEIN : 33- 37: vlpng Kvfv--E ginii RL24_HAEIN : 97- 101: kvrff Ksnn--E ii RL24_MICLU : 107- 112: kvrfa Kasgk-E l RL24_MYCCA : 48- 52: vkkhv Kptn--E dsegg RL24_MYCCA : 83- 87: kdqvt Kvgf--E iidgk RL24_PEA : 51- 56: clivm Klkrw-E rkeck RL24_PEA : 53- 59: ivmkl KrwerkE ckpns RL24_PEA : 80- 86: vgdtv KvisghE kgqig RL24_PEA : 87- 92: isghe Kgqig-E itkif RL24_PEA : 116- 120: ktkhv Ksnq--E gepgq RL24_PEA : 116- 122: ktkhv KsnqegE pgqin RL24_PEA : 179- 183: seenw Kklk--E ankkt RL24_PEA : 186- 190: lkean Kkta--E vaat RL24_PROVU : 11- 15: kvrff Ksnk--E tik RL24_SALTY : 11- 15: kvrff Ksns--E tik RL24_SPIOL : 76- 82: vgdtv KvisggE kgkig RL24_SPIOL : 83- 88: isgge Kgkig-E iskih RL24_SPIOL : 109- 115: lnfkt KhvkskE egeqg RL24_SPIOL : 112- 116: ktkhv Kske--E geqgq RL24_SPIOL : 112- 118: ktkhv KskeegE qgqii RL24_SPIOL : 114- 118: khvks Keeg--E qgqii RL24_SPIOL : 180- 184: keiqn Kkes--E tavav RL24_THEMA : 4- 10: mri KkgdlvE visgk RL24_THEMA : 5- 10: mrik Kgdlv-E visgk RL24_THEMA : 32- 36: ipken Kviv--E nvnmv RL24_THEMA : 96- 100: kvryc Kkcg--E iidkd RL24_THETH : 34- 40: avlpr KmavivE gvnlv RL24_THETH : 87- 91: ptrvr Kkfl--E dgrki RL24_TOBAC : 42- 47: cliqa Klkrw-E rkeck RL24_TOBAC : 44- 50: iqakl KrwerkE ckpns RL24_TOBAC : 78- 83: isghd Kgkvg-E iteii RL24_TOBAC : 80- 86: ghdkg KvgeitE iikhn RL24_TOBAC : 107- 111: ktkhv Ksrs--E depgq RL24_TOBAC : 107- 113: ktkhv KsrsedE pgqiv RL24_TOBAC : 170- 175: saenw Kkavk-E kektt RL24_TOBAC : 171- 175: aenwk Kavk--E kektt RL24_TOBAC : 171- 177: aenwk KavkekE kttea RL24_TOBAC : 176- 181: kavke Kektt-E avaaa Number of patterns evaluated by Pratt:33 Total running time: 1 seconds